data_5CCW # _entry.id 5CCW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5CCW pdb_00005ccw 10.2210/pdb5ccw/pdb WWPDB D_1000211404 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-16 2 'Structure model' 1 1 2016-03-30 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 5 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CCW _pdbx_database_status.recvd_initial_deposition_date 2015-07-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ferraroni, M.' 1 'Bazzicalupi, C.' 2 'Gratteri, P.' 3 'Messori, L.' 4 'Papi, F.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 55 _citation.language ? _citation.page_first 4256 _citation.page_last 4259 _citation.title ;Determinants for Tight and Selective Binding of a Medicinal Dicarbene Gold(I) Complex to a Telomeric DNA G-Quadruplex: a Joint ESI MS and XRD Investigation. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201511999 _citation.pdbx_database_id_PubMed 26929051 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bazzicalupi, C.' 1 ? primary 'Ferraroni, M.' 2 ? primary 'Papi, F.' 3 ? primary 'Massai, L.' 4 ? primary 'Bertrand, B.' 5 ? primary 'Messori, L.' 6 ? primary 'Gratteri, P.' 7 ? primary 'Casini, A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'human telomeric DNA' 7287.690 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn 'Au(caffein-2-ylidene)2' 613.401 3 ? ? ? ? 4 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA) (DG)(DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can TAGGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'Au(caffein-2-ylidene)2' 51O 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DT n 1 8 DA n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DT n 1 13 DT n 1 14 DA n 1 15 DG n 1 16 DG n 1 17 DG n 1 18 DT n 1 19 DT n 1 20 DA n 1 21 DG n 1 22 DG n 1 23 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 51O non-polymer . 'Au(caffein-2-ylidene)2' ? 'C18 H24 Au N8 O4 3' 613.401 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 ? ? ? A . n A 1 14 DA 14 14 ? ? ? A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DT 19 19 19 DT DT A . n A 1 20 DA 20 20 20 DA DA A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DG 23 23 23 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 2 K 1 102 2 K K A . D 3 51O 1 103 1 51O NHA A . E 3 51O 1 104 2 51O NHA A . F 3 51O 1 105 3 51O NHA A . G 4 HOH 1 201 20 HOH HOH A . G 4 HOH 2 202 17 HOH HOH A . G 4 HOH 3 203 12 HOH HOH A . G 4 HOH 4 204 8 HOH HOH A . G 4 HOH 5 205 4 HOH HOH A . G 4 HOH 6 206 19 HOH HOH A . G 4 HOH 7 207 3 HOH HOH A . G 4 HOH 8 208 2 HOH HOH A . G 4 HOH 9 209 6 HOH HOH A . G 4 HOH 10 210 18 HOH HOH A . G 4 HOH 11 211 10 HOH HOH A . G 4 HOH 12 212 7 HOH HOH A . G 4 HOH 13 213 5 HOH HOH A . G 4 HOH 14 214 22 HOH HOH A . G 4 HOH 15 215 13 HOH HOH A . G 4 HOH 16 216 16 HOH HOH A . G 4 HOH 17 217 14 HOH HOH A . G 4 HOH 18 218 9 HOH HOH A . G 4 HOH 19 219 21 HOH HOH A . G 4 HOH 20 220 11 HOH HOH A . G 4 HOH 21 221 1 HOH HOH A . G 4 HOH 22 222 15 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 1 ? N1 ? A DT 1 N1 2 1 Y 1 A DT 1 ? C2 ? A DT 1 C2 3 1 Y 1 A DT 1 ? O2 ? A DT 1 O2 4 1 Y 1 A DT 1 ? N3 ? A DT 1 N3 5 1 Y 1 A DT 1 ? C4 ? A DT 1 C4 6 1 Y 1 A DT 1 ? O4 ? A DT 1 O4 7 1 Y 1 A DT 1 ? C5 ? A DT 1 C5 8 1 Y 1 A DT 1 ? C7 ? A DT 1 C7 9 1 Y 1 A DT 1 ? C6 ? A DT 1 C6 10 1 Y 1 A DT 12 ? N1 ? A DT 12 N1 11 1 Y 1 A DT 12 ? C2 ? A DT 12 C2 12 1 Y 1 A DT 12 ? O2 ? A DT 12 O2 13 1 Y 1 A DT 12 ? N3 ? A DT 12 N3 14 1 Y 1 A DT 12 ? C4 ? A DT 12 C4 15 1 Y 1 A DT 12 ? O4 ? A DT 12 O4 16 1 Y 1 A DT 12 ? C5 ? A DT 12 C5 17 1 Y 1 A DT 12 ? C7 ? A DT 12 C7 18 1 Y 1 A DT 12 ? C6 ? A DT 12 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 5 # _cell.length_a 47.129 _cell.length_b 51.286 _cell.length_c 58.768 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5CCW _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.entry_id 5CCW _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CCW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG400, lithium sulphate, sodium cacodylate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-04-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9798 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9798 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5CCW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.89 _reflns.d_resolution_low 38.64 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 5821 _reflns.number_obs 5821 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.36 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.89 _reflns_shell.d_res_low 2.01 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 87.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.117 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.entry_id 5CCW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.8900 _refine.ls_d_res_low 30.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.6300 _refine.ls_number_reflns_obs 5512 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2271 _refine.ls_R_factor_R_work 0.2253 _refine.ls_wR_factor_R_work 0.2150 _refine.ls_R_factor_R_free 0.2601 _refine.ls_wR_factor_R_free 0.2589 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 295 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 46.5750 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 3.8400 _refine.aniso_B[2][2] -6.3200 _refine.aniso_B[3][3] 2.4900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9730 _refine.overall_SU_R_Cruickshank_DPI 0.1763 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.1584 _refine.pdbx_overall_ESU_R 0.1760 _refine.pdbx_overall_ESU_R_Free 0.1580 _refine.overall_SU_ML 0.1780 _refine.overall_SU_B 6.8900 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3R6R _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.6627 _refine.B_iso_max 124.630 _refine.B_iso_min 25.890 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8900 _refine_hist.d_res_low 30.0000 _refine_hist.pdbx_number_atoms_ligand 95 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 543 _refine_hist.pdbx_number_residues_total 21 _refine_hist.pdbx_B_iso_mean_ligand 35.68 _refine_hist.pdbx_B_iso_mean_solvent 46.27 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 426 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 581 0.006 0.012 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 904 1.133 1.467 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 61 0.069 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 310 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_scbond_it 580 3.911 4.776 ? ? # _refine_ls_shell.d_res_high 1.8920 _refine_ls_shell.d_res_low 1.9410 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 78.2300 _refine_ls_shell.number_reflns_R_work 308 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.4880 _refine_ls_shell.R_factor_R_free 0.6520 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 327 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 5CCW _struct.title 'Structure of the complex of a human telomeric DNA with Au(caffein-2-ylidene)2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CCW _struct_keywords.text 'DRUG-DNA COMPLEX, G-QUADRUPLEX' _struct_keywords.pdbx_keywords DRUG/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_ref.db_code 5CCW _struct_ref.db_name PDB _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession 5CCW _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_align_end ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CCW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5CCW _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 101 1_555 ? ? ? ? ? ? ? 2.689 ? ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc3 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 2.812 ? ? metalc4 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 102 1_555 ? ? ? ? ? ? ? 2.673 ? ? metalc5 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 101 1_555 ? ? ? ? ? ? ? 2.936 ? ? metalc6 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 2.877 ? ? metalc7 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 3.001 ? ? metalc8 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 102 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc9 metalc ? ? A DG 15 O6 ? ? ? 1_555 B K . K ? ? A DG 15 A K 101 1_555 ? ? ? ? ? ? ? 2.703 ? ? metalc10 metalc ? ? A DG 16 O6 ? ? ? 1_555 B K . K ? ? A DG 16 A K 101 1_555 ? ? ? ? ? ? ? 2.934 ? ? metalc11 metalc ? ? A DG 16 O6 ? ? ? 1_555 C K . K ? ? A DG 16 A K 102 1_555 ? ? ? ? ? ? ? 2.796 ? ? metalc12 metalc ? ? A DG 17 O6 ? ? ? 1_555 C K . K ? ? A DG 17 A K 102 1_555 ? ? ? ? ? ? ? 2.860 ? ? metalc13 metalc ? ? A DG 21 O6 ? ? ? 1_555 B K . K ? ? A DG 21 A K 101 1_555 ? ? ? ? ? ? ? 2.806 ? ? metalc14 metalc ? ? A DG 22 O6 ? ? ? 1_555 B K . K ? ? A DG 22 A K 101 1_555 ? ? ? ? ? ? ? 3.154 ? ? metalc15 metalc ? ? A DG 22 O6 ? ? ? 1_555 C K . K ? ? A DG 22 A K 102 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc16 metalc ? ? A DG 23 O6 ? ? ? 1_555 C K . K ? ? A DG 23 A K 102 1_555 ? ? ? ? ? ? ? 2.819 ? ? hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 4 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 23 N2 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 23 N1 ? ? A DG 5 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 11 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 15 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 16 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 17 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 78.8 ? 2 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 78.8 ? 3 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 94.2 ? 4 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 140.1 ? 5 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 70.1 ? 6 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 79.1 ? 7 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 118.9 ? 8 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 154.5 ? 9 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 73.3 ? 10 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 85.5 ? 11 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 147.7 ? 12 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 97.7 ? 13 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 133.4 ? 14 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 63.4 ? 15 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 77.0 ? 16 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 71.3 ? 17 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 129.3 ? 18 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 117.9 ? 19 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 148.6 ? 20 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 75.8 ? 21 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 87.6 ? 22 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 87.3 ? 23 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 63.6 ? 24 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 155.9 ? 25 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 100.2 ? 26 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 130.8 ? 27 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 63.2 ? 28 O6 ? A DG 21 ? A DG 21 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 74.9 ? 29 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 69.8 ? 30 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 69.6 ? 31 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 91.2 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 128.5 ? 33 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 78.2 ? 34 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 72.0 ? 35 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 103.2 ? 36 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 154.2 ? 37 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 63.5 ? 38 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 88.7 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 156.0 ? 40 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 121.4 ? 41 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 127.2 ? 42 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 75.5 ? 43 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 75.4 ? 44 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 69.8 ? 45 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 126.0 ? 46 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 106.5 ? 47 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 155.7 ? 48 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 70.0 ? 49 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 87.7 ? 50 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 96.0 ? 51 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 76.5 ? 52 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 163.8 ? 53 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 114.7 ? 54 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 129.3 ? 55 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 68.9 ? 56 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 23 ? A DG 23 ? 1_555 73.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A K 102 ? 9 'binding site for residue K A 102' AC3 Software A 51O 103 ? 9 'binding site for residue 51O A 103' AC4 Software A 51O 104 ? 9 'binding site for residue 51O A 104' AC5 Software A 51O 105 ? 8 'binding site for residue 51O A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 9 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 9 DG A 9 ? DG A 9 . ? 1_555 ? 4 AC1 9 DG A 10 ? DG A 10 . ? 1_555 ? 5 AC1 9 DG A 15 ? DG A 15 . ? 1_555 ? 6 AC1 9 DG A 16 ? DG A 16 . ? 1_555 ? 7 AC1 9 DG A 21 ? DG A 21 . ? 1_555 ? 8 AC1 9 DG A 22 ? DG A 22 . ? 1_555 ? 9 AC1 9 K C . ? K A 102 . ? 1_555 ? 10 AC2 9 DG A 4 ? DG A 4 . ? 1_555 ? 11 AC2 9 DG A 5 ? DG A 5 . ? 1_555 ? 12 AC2 9 DG A 10 ? DG A 10 . ? 1_555 ? 13 AC2 9 DG A 11 ? DG A 11 . ? 1_555 ? 14 AC2 9 DG A 16 ? DG A 16 . ? 1_555 ? 15 AC2 9 DG A 17 ? DG A 17 . ? 1_555 ? 16 AC2 9 DG A 22 ? DG A 22 . ? 1_555 ? 17 AC2 9 DG A 23 ? DG A 23 . ? 1_555 ? 18 AC2 9 K B . ? K A 101 . ? 1_555 ? 19 AC3 9 DG A 5 ? DG A 5 . ? 8_554 ? 20 AC3 9 DG A 5 ? DG A 5 . ? 1_555 ? 21 AC3 9 DG A 11 ? DG A 11 . ? 1_555 ? 22 AC3 9 DG A 11 ? DG A 11 . ? 8_554 ? 23 AC3 9 DG A 17 ? DG A 17 . ? 1_555 ? 24 AC3 9 DG A 17 ? DG A 17 . ? 8_554 ? 25 AC3 9 DG A 23 ? DG A 23 . ? 1_555 ? 26 AC3 9 HOH G . ? HOH A 211 . ? 1_555 ? 27 AC3 9 HOH G . ? HOH A 221 . ? 1_555 ? 28 AC4 9 DG A 9 ? DG A 9 . ? 1_555 ? 29 AC4 9 DG A 15 ? DG A 15 . ? 1_555 ? 30 AC4 9 DG A 15 ? DG A 15 . ? 6_555 ? 31 AC4 9 DA A 20 ? DA A 20 . ? 1_555 ? 32 AC4 9 DA A 20 ? DA A 20 . ? 6_555 ? 33 AC4 9 DG A 21 ? DG A 21 . ? 1_555 ? 34 AC4 9 DG A 21 ? DG A 21 . ? 6_555 ? 35 AC4 9 51O F . ? 51O A 105 . ? 6_555 ? 36 AC4 9 51O F . ? 51O A 105 . ? 1_555 ? 37 AC5 8 DG A 3 ? DG A 3 . ? 6_555 ? 38 AC5 8 DG A 3 ? DG A 3 . ? 1_555 ? 39 AC5 8 DA A 8 ? DA A 8 . ? 6_555 ? 40 AC5 8 DA A 8 ? DA A 8 . ? 1_555 ? 41 AC5 8 DG A 9 ? DG A 9 . ? 1_555 ? 42 AC5 8 DG A 9 ? DG A 9 . ? 6_555 ? 43 AC5 8 51O E . ? 51O A 104 . ? 6_555 ? 44 AC5 8 51O E . ? 51O A 104 . ? 1_555 ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A 51O 103 ? D 51O . 2 1 A HOH 213 ? G HOH . # _pdbx_phasing_MR.entry_id 5CCW _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.000 _pdbx_phasing_MR.d_res_low_rotation 36.730 _pdbx_phasing_MR.d_res_high_translation 2.000 _pdbx_phasing_MR.d_res_low_translation 36.730 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DT 13 ? A DT 13 2 1 Y 1 A DA 14 ? A DA 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 51O O4 O N N 1 51O C15 C N N 2 51O N7 N N N 3 51O C17 C N N 4 51O C16 C N N 5 51O O3 O N N 6 51O C13 C Y N 7 51O N5 N Y N 8 51O C11 C N N 9 51O N8 N N N 10 51O C18 C N N 11 51O C14 C Y N 12 51O N6 N Y N 13 51O C12 C N N 14 51O C10 C Y N 15 51O AU AU N N 16 51O C1 C Y N 17 51O N2 N Y N 18 51O C5 C Y N 19 51O C3 C N N 20 51O N1 N Y N 21 51O C2 C N N 22 51O C4 C Y N 23 51O N4 N N N 24 51O C8 C N N 25 51O C7 C N N 26 51O O2 O N N 27 51O N3 N N N 28 51O C9 C N N 29 51O C6 C N N 30 51O O1 O N N 31 51O H1 H N N 32 51O H2 H N N 33 51O H3 H N N 34 51O H4 H N N 35 51O H5 H N N 36 51O H6 H N N 37 51O H7 H N N 38 51O H8 H N N 39 51O H9 H N N 40 51O H10 H N N 41 51O H11 H N N 42 51O H12 H N N 43 51O H13 H N N 44 51O H14 H N N 45 51O H15 H N N 46 51O H16 H N N 47 51O H17 H N N 48 51O H18 H N N 49 51O H19 H N N 50 51O H20 H N N 51 51O H21 H N N 52 51O H22 H N N 53 51O H23 H N N 54 51O H24 H N N 55 DA OP3 O N N 56 DA P P N N 57 DA OP1 O N N 58 DA OP2 O N N 59 DA "O5'" O N N 60 DA "C5'" C N N 61 DA "C4'" C N R 62 DA "O4'" O N N 63 DA "C3'" C N S 64 DA "O3'" O N N 65 DA "C2'" C N N 66 DA "C1'" C N R 67 DA N9 N Y N 68 DA C8 C Y N 69 DA N7 N Y N 70 DA C5 C Y N 71 DA C6 C Y N 72 DA N6 N N N 73 DA N1 N Y N 74 DA C2 C Y N 75 DA N3 N Y N 76 DA C4 C Y N 77 DA HOP3 H N N 78 DA HOP2 H N N 79 DA "H5'" H N N 80 DA "H5''" H N N 81 DA "H4'" H N N 82 DA "H3'" H N N 83 DA "HO3'" H N N 84 DA "H2'" H N N 85 DA "H2''" H N N 86 DA "H1'" H N N 87 DA H8 H N N 88 DA H61 H N N 89 DA H62 H N N 90 DA H2 H N N 91 DG OP3 O N N 92 DG P P N N 93 DG OP1 O N N 94 DG OP2 O N N 95 DG "O5'" O N N 96 DG "C5'" C N N 97 DG "C4'" C N R 98 DG "O4'" O N N 99 DG "C3'" C N S 100 DG "O3'" O N N 101 DG "C2'" C N N 102 DG "C1'" C N R 103 DG N9 N Y N 104 DG C8 C Y N 105 DG N7 N Y N 106 DG C5 C Y N 107 DG C6 C N N 108 DG O6 O N N 109 DG N1 N N N 110 DG C2 C N N 111 DG N2 N N N 112 DG N3 N N N 113 DG C4 C Y N 114 DG HOP3 H N N 115 DG HOP2 H N N 116 DG "H5'" H N N 117 DG "H5''" H N N 118 DG "H4'" H N N 119 DG "H3'" H N N 120 DG "HO3'" H N N 121 DG "H2'" H N N 122 DG "H2''" H N N 123 DG "H1'" H N N 124 DG H8 H N N 125 DG H1 H N N 126 DG H21 H N N 127 DG H22 H N N 128 DT OP3 O N N 129 DT P P N N 130 DT OP1 O N N 131 DT OP2 O N N 132 DT "O5'" O N N 133 DT "C5'" C N N 134 DT "C4'" C N R 135 DT "O4'" O N N 136 DT "C3'" C N S 137 DT "O3'" O N N 138 DT "C2'" C N N 139 DT "C1'" C N R 140 DT N1 N N N 141 DT C2 C N N 142 DT O2 O N N 143 DT N3 N N N 144 DT C4 C N N 145 DT O4 O N N 146 DT C5 C N N 147 DT C7 C N N 148 DT C6 C N N 149 DT HOP3 H N N 150 DT HOP2 H N N 151 DT "H5'" H N N 152 DT "H5''" H N N 153 DT "H4'" H N N 154 DT "H3'" H N N 155 DT "HO3'" H N N 156 DT "H2'" H N N 157 DT "H2''" H N N 158 DT "H1'" H N N 159 DT H3 H N N 160 DT H71 H N N 161 DT H72 H N N 162 DT H73 H N N 163 DT H6 H N N 164 HOH O O N N 165 HOH H1 H N N 166 HOH H2 H N N 167 K K K N N 168 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 51O C17 N7 sing N N 1 51O O4 C15 doub N N 2 51O N7 C15 sing N N 3 51O N7 C16 sing N N 4 51O C15 N8 sing N N 5 51O O3 C16 doub N N 6 51O C16 C13 sing N N 7 51O C18 N8 sing N N 8 51O N8 C14 sing N N 9 51O C13 C14 doub Y N 10 51O C13 N5 sing Y N 11 51O C14 N6 sing Y N 12 51O N5 C11 sing N N 13 51O N5 C10 sing Y N 14 51O N6 C12 sing N N 15 51O N6 C10 doub Y N 16 51O C10 AU sing N N 17 51O AU C1 sing N N 18 51O C1 N2 sing Y N 19 51O C1 N1 doub Y N 20 51O C3 N2 sing N N 21 51O N2 C5 sing Y N 22 51O C2 N1 sing N N 23 51O N1 C4 sing Y N 24 51O C5 C4 doub Y N 25 51O C5 C6 sing N N 26 51O C4 N4 sing N N 27 51O O1 C6 doub N N 28 51O C6 N3 sing N N 29 51O N4 C8 sing N N 30 51O N4 C7 sing N N 31 51O N3 C7 sing N N 32 51O N3 C9 sing N N 33 51O C7 O2 doub N N 34 51O C17 H1 sing N N 35 51O C17 H2 sing N N 36 51O C17 H3 sing N N 37 51O C11 H4 sing N N 38 51O C11 H5 sing N N 39 51O C11 H6 sing N N 40 51O C18 H7 sing N N 41 51O C18 H8 sing N N 42 51O C18 H9 sing N N 43 51O C12 H10 sing N N 44 51O C12 H11 sing N N 45 51O C12 H12 sing N N 46 51O C3 H13 sing N N 47 51O C3 H14 sing N N 48 51O C3 H15 sing N N 49 51O C2 H16 sing N N 50 51O C2 H17 sing N N 51 51O C2 H18 sing N N 52 51O C8 H19 sing N N 53 51O C8 H20 sing N N 54 51O C8 H21 sing N N 55 51O C9 H22 sing N N 56 51O C9 H23 sing N N 57 51O C9 H24 sing N N 58 DA OP3 P sing N N 59 DA OP3 HOP3 sing N N 60 DA P OP1 doub N N 61 DA P OP2 sing N N 62 DA P "O5'" sing N N 63 DA OP2 HOP2 sing N N 64 DA "O5'" "C5'" sing N N 65 DA "C5'" "C4'" sing N N 66 DA "C5'" "H5'" sing N N 67 DA "C5'" "H5''" sing N N 68 DA "C4'" "O4'" sing N N 69 DA "C4'" "C3'" sing N N 70 DA "C4'" "H4'" sing N N 71 DA "O4'" "C1'" sing N N 72 DA "C3'" "O3'" sing N N 73 DA "C3'" "C2'" sing N N 74 DA "C3'" "H3'" sing N N 75 DA "O3'" "HO3'" sing N N 76 DA "C2'" "C1'" sing N N 77 DA "C2'" "H2'" sing N N 78 DA "C2'" "H2''" sing N N 79 DA "C1'" N9 sing N N 80 DA "C1'" "H1'" sing N N 81 DA N9 C8 sing Y N 82 DA N9 C4 sing Y N 83 DA C8 N7 doub Y N 84 DA C8 H8 sing N N 85 DA N7 C5 sing Y N 86 DA C5 C6 sing Y N 87 DA C5 C4 doub Y N 88 DA C6 N6 sing N N 89 DA C6 N1 doub Y N 90 DA N6 H61 sing N N 91 DA N6 H62 sing N N 92 DA N1 C2 sing Y N 93 DA C2 N3 doub Y N 94 DA C2 H2 sing N N 95 DA N3 C4 sing Y N 96 DG OP3 P sing N N 97 DG OP3 HOP3 sing N N 98 DG P OP1 doub N N 99 DG P OP2 sing N N 100 DG P "O5'" sing N N 101 DG OP2 HOP2 sing N N 102 DG "O5'" "C5'" sing N N 103 DG "C5'" "C4'" sing N N 104 DG "C5'" "H5'" sing N N 105 DG "C5'" "H5''" sing N N 106 DG "C4'" "O4'" sing N N 107 DG "C4'" "C3'" sing N N 108 DG "C4'" "H4'" sing N N 109 DG "O4'" "C1'" sing N N 110 DG "C3'" "O3'" sing N N 111 DG "C3'" "C2'" sing N N 112 DG "C3'" "H3'" sing N N 113 DG "O3'" "HO3'" sing N N 114 DG "C2'" "C1'" sing N N 115 DG "C2'" "H2'" sing N N 116 DG "C2'" "H2''" sing N N 117 DG "C1'" N9 sing N N 118 DG "C1'" "H1'" sing N N 119 DG N9 C8 sing Y N 120 DG N9 C4 sing Y N 121 DG C8 N7 doub Y N 122 DG C8 H8 sing N N 123 DG N7 C5 sing Y N 124 DG C5 C6 sing N N 125 DG C5 C4 doub Y N 126 DG C6 O6 doub N N 127 DG C6 N1 sing N N 128 DG N1 C2 sing N N 129 DG N1 H1 sing N N 130 DG C2 N2 sing N N 131 DG C2 N3 doub N N 132 DG N2 H21 sing N N 133 DG N2 H22 sing N N 134 DG N3 C4 sing N N 135 DT OP3 P sing N N 136 DT OP3 HOP3 sing N N 137 DT P OP1 doub N N 138 DT P OP2 sing N N 139 DT P "O5'" sing N N 140 DT OP2 HOP2 sing N N 141 DT "O5'" "C5'" sing N N 142 DT "C5'" "C4'" sing N N 143 DT "C5'" "H5'" sing N N 144 DT "C5'" "H5''" sing N N 145 DT "C4'" "O4'" sing N N 146 DT "C4'" "C3'" sing N N 147 DT "C4'" "H4'" sing N N 148 DT "O4'" "C1'" sing N N 149 DT "C3'" "O3'" sing N N 150 DT "C3'" "C2'" sing N N 151 DT "C3'" "H3'" sing N N 152 DT "O3'" "HO3'" sing N N 153 DT "C2'" "C1'" sing N N 154 DT "C2'" "H2'" sing N N 155 DT "C2'" "H2''" sing N N 156 DT "C1'" N1 sing N N 157 DT "C1'" "H1'" sing N N 158 DT N1 C2 sing N N 159 DT N1 C6 sing N N 160 DT C2 O2 doub N N 161 DT C2 N3 sing N N 162 DT N3 C4 sing N N 163 DT N3 H3 sing N N 164 DT C4 O4 doub N N 165 DT C4 C5 sing N N 166 DT C5 C7 sing N N 167 DT C5 C6 doub N N 168 DT C7 H71 sing N N 169 DT C7 H72 sing N N 170 DT C7 H73 sing N N 171 DT C6 H6 sing N N 172 HOH O H1 sing N N 173 HOH O H2 sing N N 174 # _ndb_struct_conf_na.entry_id 5CCW _ndb_struct_conf_na.feature 'quadruple helix' # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3R6R _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5CCW _atom_sites.fract_transf_matrix[1][1] 0.021218 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019499 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017016 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol AU C K N O P # loop_