data_5CPD # _entry.id 5CPD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5CPD WWPDB D_1000212001 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '3DLD is a native structure' 3DLD unspecified PDB '5CP0 contains different protein complexed with fMAS' 5CP0 unspecified PDB . 5CVK unspecified PDB . 5CVP unspecified PDB . 5CVQ unspecified PDB . 5CWX unspecified PDB . 5CWY unspecified PDB . 5CX0 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5CPD _pdbx_database_status.recvd_initial_deposition_date 2015-07-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ngo, H.P.T.' 1 'Kang, L.W.' 2 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? ? ? ? primary 'To Be Published' ? 0353 ? ? ? ? ? ? ? 'Methionine-alanine complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae' ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 'To Be Published' ? 0353 ? ? ? ? ? ? ? 'Substrates complexed structure of XOO1075, a peptide defromylase from xanthomonas oryzae pv. oryzae' ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ngo, H.P.T.' 1 primary 'Kang, L.W.' 2 1 'Ngo, H.P.T.' 3 1 'Kang, L.W.' 4 # _cell.entry_id 5CPD _cell.length_a 58.584 _cell.length_b 58.584 _cell.length_c 266.188 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CPD _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptide deformylase' 19129.656 1 3.5.1.88 ? 'UNP residues 42-212' ? 2 non-polymer syn 'CADMIUM ION' 112.411 3 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 non-polymer syn METHIONINE 149.211 1 ? ? ? ? 7 non-polymer syn ALANINE 89.093 1 ? ? ? ? 8 water nat water 18.015 100 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PDF,Polypeptide deformylase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL ANAQIEPLSDEMENGWEG(CSD)LSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIE NFDTFGFDDVLSYDL ; _entity_poly.pdbx_seq_one_letter_code_can ;MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL ANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDT FGFDDVLSYDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 ARG n 1 4 ASP n 1 5 ILE n 1 6 ILE n 1 7 ARG n 1 8 MET n 1 9 GLY n 1 10 ASP n 1 11 LYS n 1 12 ARG n 1 13 LEU n 1 14 LEU n 1 15 ARG n 1 16 VAL n 1 17 ALA n 1 18 PRO n 1 19 GLN n 1 20 VAL n 1 21 THR n 1 22 ASN n 1 23 LEU n 1 24 GLY n 1 25 SER n 1 26 ALA n 1 27 GLU n 1 28 LEU n 1 29 HIS n 1 30 ALA n 1 31 LEU n 1 32 VAL n 1 33 SER n 1 34 ASP n 1 35 MET n 1 36 PHE n 1 37 GLU n 1 38 THR n 1 39 MET n 1 40 GLY n 1 41 ALA n 1 42 ALA n 1 43 HIS n 1 44 GLY n 1 45 VAL n 1 46 GLY n 1 47 LEU n 1 48 ALA n 1 49 ALA n 1 50 PRO n 1 51 GLN n 1 52 ILE n 1 53 ALA n 1 54 VAL n 1 55 ASP n 1 56 LEU n 1 57 GLN n 1 58 LEU n 1 59 MET n 1 60 VAL n 1 61 PHE n 1 62 GLY n 1 63 PHE n 1 64 GLU n 1 65 ALA n 1 66 SER n 1 67 GLU n 1 68 ARG n 1 69 TYR n 1 70 PRO n 1 71 GLU n 1 72 ALA n 1 73 PRO n 1 74 ALA n 1 75 VAL n 1 76 PRO n 1 77 LEU n 1 78 THR n 1 79 ALA n 1 80 LEU n 1 81 ALA n 1 82 ASN n 1 83 ALA n 1 84 GLN n 1 85 ILE n 1 86 GLU n 1 87 PRO n 1 88 LEU n 1 89 SER n 1 90 ASP n 1 91 GLU n 1 92 MET n 1 93 GLU n 1 94 ASN n 1 95 GLY n 1 96 TRP n 1 97 GLU n 1 98 GLY n 1 99 CSD n 1 100 LEU n 1 101 SER n 1 102 ILE n 1 103 PRO n 1 104 GLY n 1 105 LEU n 1 106 ARG n 1 107 ALA n 1 108 VAL n 1 109 ILE n 1 110 PRO n 1 111 ARG n 1 112 TYR n 1 113 ARG n 1 114 TYR n 1 115 ILE n 1 116 ARG n 1 117 TYR n 1 118 ARG n 1 119 GLY n 1 120 PHE n 1 121 ALA n 1 122 PRO n 1 123 ASP n 1 124 GLY n 1 125 SER n 1 126 PRO n 1 127 ILE n 1 128 GLU n 1 129 ARG n 1 130 GLU n 1 131 ALA n 1 132 GLU n 1 133 GLY n 1 134 PHE n 1 135 HIS n 1 136 ALA n 1 137 ARG n 1 138 VAL n 1 139 VAL n 1 140 GLN n 1 141 HIS n 1 142 GLU n 1 143 TYR n 1 144 ASP n 1 145 HIS n 1 146 LEU n 1 147 VAL n 1 148 GLY n 1 149 ARG n 1 150 LEU n 1 151 TYR n 1 152 PRO n 1 153 SER n 1 154 ARG n 1 155 ILE n 1 156 GLU n 1 157 ASN n 1 158 PHE n 1 159 ASP n 1 160 THR n 1 161 PHE n 1 162 GLY n 1 163 PHE n 1 164 ASP n 1 165 ASP n 1 166 VAL n 1 167 LEU n 1 168 SER n 1 169 TYR n 1 170 ASP n 1 171 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 171 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'def, XOO1075' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain KACC10331 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xanthomonas oryzae pv. oryzae KACC10331' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 291331 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5H3Z2_XANOR _struct_ref.pdbx_db_accession Q5H3Z2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTAL ANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDT FGFDDVLSYDL ; _struct_ref.pdbx_align_begin 42 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5CPD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5H3Z2 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 212 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 171 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CSD 'L-peptide linking' n 3-SULFINOALANINE 'S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE' 'C3 H7 N O4 S' 153.157 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5CPD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.41 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 63.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 287 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05M cadmium sulfate, 0.1M HEPES pH 7.5, 2.0M sodium acetate trihydrate' _exptl_crystal_grow.pdbx_pH_range 7.0-8.0 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2009-11-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_synchrotron_site PAL/PLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5CPD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16778 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5CPD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13851 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.40 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 98.98 _refine.ls_R_factor_obs 0.19393 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19118 _refine.ls_R_factor_R_free 0.24724 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 729 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.B_iso_mean 29.701 _refine.aniso_B[1][1] -0.04 _refine.aniso_B[2][2] -0.04 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] -0.04 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.182 _refine.pdbx_overall_ESU_R_Free 0.179 _refine.overall_SU_ML 0.125 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.992 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1317 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 1446 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 30.40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.019 ? 1395 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.086 1.976 ? 1859 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.330 5.000 ? 170 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.602 22.836 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.165 15.000 ? 215 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.675 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.136 0.200 ? 200 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1078 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.404 2.728 ? 678 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.359 4.067 ? 844 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.969 3.057 ? 710 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.024 23.488 ? 2126 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 1004 _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.percent_reflns_obs 99.72 _refine_ls_shell.R_factor_R_free 0.348 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5CPD _struct.title 'Methionine-alanine complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae' _struct.pdbx_descriptor 'Peptide deformylase (E.C.3.5.1.88)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5CPD _struct_keywords.text 'Methionine-alanine complex, peptide deformylase, Xanthomonas, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 7 ? K N N 8 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 10 ? ARG A 15 ? ASP A 10 ARG A 15 5 ? 6 HELX_P HELX_P2 AA2 SER A 25 ? ALA A 42 ? SER A 25 ALA A 42 1 ? 18 HELX_P HELX_P3 AA3 PRO A 50 ? ALA A 53 ? PRO A 50 ALA A 53 5 ? 4 HELX_P HELX_P4 AA4 GLY A 133 ? VAL A 147 ? GLY A 133 VAL A 147 1 ? 15 HELX_P HELX_P5 AA5 LEU A 150 ? ILE A 155 ? LEU A 150 ILE A 155 5 ? 6 HELX_P HELX_P6 AA6 ASN A 157 ? PHE A 161 ? ASN A 157 PHE A 161 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A GLU 37 OE2 ? ? ? 1_555 B CD . CD ? ? A GLU 37 A CD 201 1_555 ? ? ? ? ? ? ? 2.218 ? covale1 covale both ? A GLY 98 C ? ? ? 1_555 A CSD 99 N ? ? A GLY 98 A CSD 99 1_555 ? ? ? ? ? ? ? 1.337 ? metalc2 metalc ? ? A CSD 99 SG ? ? ? 1_555 C CD . CD ? ? A CSD 99 A CD 202 1_555 ? ? ? ? ? ? ? 2.657 ? covale2 covale both ? A CSD 99 C ? ? ? 1_555 A LEU 100 N ? ? A CSD 99 A LEU 100 1_555 ? ? ? ? ? ? ? 1.319 ? metalc3 metalc ? ? A CSD 99 OD2 ? ? ? 1_555 C CD . CD ? ? A CSD 99 A CD 202 1_555 ? ? ? ? ? ? ? 2.165 ? metalc4 metalc ? ? A LEU 105 O ? ? ? 1_555 G NA . NA ? ? A LEU 105 A NA 206 1_555 ? ? ? ? ? ? ? 2.339 ? metalc5 metalc ? ? A GLU 128 OE1 ? ? ? 1_555 D CD . CD ? ? A GLU 128 A CD 203 1_555 ? ? ? ? ? ? ? 2.251 ? metalc6 metalc ? ? A GLU 128 OE2 ? ? ? 1_555 D CD . CD ? ? A GLU 128 A CD 203 1_555 ? ? ? ? ? ? ? 2.274 ? metalc7 metalc ? ? A GLU 130 OE1 ? ? ? 1_555 D CD . CD ? ? A GLU 130 A CD 203 1_555 ? ? ? ? ? ? ? 2.268 ? metalc8 metalc ? ? A GLU 130 OE2 ? ? ? 1_555 D CD . CD ? ? A GLU 130 A CD 203 1_555 ? ? ? ? ? ? ? 2.237 ? metalc9 metalc ? ? A HIS 141 NE2 ? ? ? 1_555 C CD . CD ? ? A HIS 141 A CD 202 1_555 ? ? ? ? ? ? ? 2.239 ? metalc10 metalc ? ? A HIS 145 NE2 ? ? ? 1_555 C CD . CD ? ? A HIS 145 A CD 202 1_555 ? ? ? ? ? ? ? 2.248 ? metalc11 metalc ? ? A GLY 148 O ? ? ? 1_555 F NA . NA ? ? A GLY 148 A NA 205 1_555 ? ? ? ? ? ? ? 2.402 ? metalc12 metalc ? ? A ASP 164 OD2 ? ? ? 1_555 G NA . NA ? ? A ASP 164 A NA 206 1_555 ? ? ? ? ? ? ? 2.265 ? metalc13 metalc ? ? B CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 201 A HOH 374 1_555 ? ? ? ? ? ? ? 2.224 ? metalc14 metalc ? ? C CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 202 A HOH 313 1_555 ? ? ? ? ? ? ? 2.168 ? metalc15 metalc ? ? C CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 202 A HOH 326 1_555 ? ? ? ? ? ? ? 2.631 ? metalc16 metalc ? ? D CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 203 A HOH 303 1_555 ? ? ? ? ? ? ? 2.187 ? metalc17 metalc ? ? D CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 203 A HOH 312 1_555 ? ? ? ? ? ? ? 2.216 ? metalc18 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 205 A HOH 308 1_555 ? ? ? ? ? ? ? 2.255 ? metalc19 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 205 A HOH 362 1_555 ? ? ? ? ? ? ? 2.290 ? metalc20 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 206 A HOH 366 1_555 ? ? ? ? ? ? ? 2.275 ? metalc21 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 206 A HOH 381 1_555 ? ? ? ? ? ? ? 2.571 ? metalc22 metalc ? ? A HIS 43 NE2 ? ? ? 1_555 D CD . CD ? ? A HIS 43 A CD 203 8_445 ? ? ? ? ? ? ? 2.233 ? metalc23 metalc ? ? A GLU 132 OE1 ? ? ? 1_555 B CD . CD ? ? A GLU 132 A CD 201 8_545 ? ? ? ? ? ? ? 2.245 ? metalc24 metalc ? ? A GLU 132 OE2 ? ? ? 1_555 B CD . CD ? ? A GLU 132 A CD 201 8_545 ? ? ? ? ? ? ? 2.275 ? metalc25 metalc ? ? A ASP 159 OD1 ? ? ? 1_555 F NA . NA ? ? A ASP 159 A NA 205 8_555 ? ? ? ? ? ? ? 2.407 ? metalc26 metalc ? ? B CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 201 A HOH 301 8_445 ? ? ? ? ? ? ? 2.216 ? metalc27 metalc ? ? B CD . CD ? ? ? 1_555 K HOH . O ? ? A CD 201 A HOH 376 8_445 ? ? ? ? ? ? ? 2.223 ? metalc28 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 205 A HOH 386 8_555 ? ? ? ? ? ? ? 2.250 ? covale3 covale ? ? I MET . C ? ? ? 1_555 J ALA . N ? ? A MET 208 A ALA 209 1_555 ? ? ? ? ? ? ? 1.312 sing # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 46 ? ALA A 48 ? GLY A 46 ALA A 48 AA1 2 LEU A 58 ? PHE A 63 ? LEU A 58 PHE A 63 AA1 3 VAL A 75 ? PRO A 87 ? VAL A 75 PRO A 87 AA1 4 TYR A 114 ? PHE A 120 ? TYR A 114 PHE A 120 AA1 5 PRO A 126 ? GLU A 132 ? PRO A 126 GLU A 132 AA2 1 MET A 92 ? CSD A 99 ? MET A 92 CSD A 99 AA2 2 ILE A 102 ? TYR A 112 ? ILE A 102 TYR A 112 AA2 3 GLY A 162 ? PHE A 163 ? GLY A 162 PHE A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 47 ? N LEU A 47 O VAL A 60 ? O VAL A 60 AA1 2 3 N PHE A 61 ? N PHE A 61 O THR A 78 ? O THR A 78 AA1 3 4 N ALA A 81 ? N ALA A 81 O PHE A 120 ? O PHE A 120 AA1 4 5 N GLY A 119 ? N GLY A 119 O ILE A 127 ? O ILE A 127 AA2 1 2 N GLU A 93 ? N GLU A 93 O ARG A 111 ? O ARG A 111 AA2 2 3 N ARG A 106 ? N ARG A 106 O GLY A 162 ? O GLY A 162 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CD 201 ? 5 'binding site for residue CD A 201' AC2 Software A CD 202 ? 6 'binding site for residue CD A 202' AC3 Software A CD 203 ? 5 'binding site for residue CD A 203' AC4 Software A ACT 204 ? 7 'binding site for residue ACT A 204' AC5 Software A NA 205 ? 6 'binding site for residue NA A 205' AC6 Software A NA 206 ? 4 'binding site for residue NA A 206' AC7 Software A GOL 207 ? 2 'binding site for residue GOL A 207' AC8 Software A MET 208 ? 9 'binding site for residue MET A 208' AC9 Software A ALA 209 ? 5 'binding site for residue ALA A 209' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 37 ? GLU A 37 . ? 1_555 ? 2 AC1 5 GLU A 132 ? GLU A 132 . ? 8_445 ? 3 AC1 5 HOH K . ? HOH A 301 . ? 8_445 ? 4 AC1 5 HOH K . ? HOH A 374 . ? 1_555 ? 5 AC1 5 HOH K . ? HOH A 376 . ? 8_445 ? 6 AC2 6 GLN A 51 ? GLN A 51 . ? 1_555 ? 7 AC2 6 CSD A 99 ? CSD A 99 . ? 1_555 ? 8 AC2 6 HIS A 141 ? HIS A 141 . ? 1_555 ? 9 AC2 6 HIS A 145 ? HIS A 145 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH A 313 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH A 326 . ? 1_555 ? 12 AC3 5 HIS A 43 ? HIS A 43 . ? 8_545 ? 13 AC3 5 GLU A 128 ? GLU A 128 . ? 1_555 ? 14 AC3 5 GLU A 130 ? GLU A 130 . ? 1_555 ? 15 AC3 5 HOH K . ? HOH A 303 . ? 1_555 ? 16 AC3 5 HOH K . ? HOH A 312 . ? 1_555 ? 17 AC4 7 ARG A 149 ? ARG A 149 . ? 1_555 ? 18 AC4 7 LEU A 150 ? LEU A 150 . ? 1_555 ? 19 AC4 7 SER A 153 ? SER A 153 . ? 1_555 ? 20 AC4 7 ASP A 159 ? ASP A 159 . ? 8_555 ? 21 AC4 7 HOH K . ? HOH A 307 . ? 1_555 ? 22 AC4 7 HOH K . ? HOH A 341 . ? 1_555 ? 23 AC4 7 HOH K . ? HOH A 347 . ? 1_555 ? 24 AC5 6 LEU A 14 ? LEU A 14 . ? 1_555 ? 25 AC5 6 GLY A 148 ? GLY A 148 . ? 1_555 ? 26 AC5 6 ASP A 159 ? ASP A 159 . ? 8_555 ? 27 AC5 6 HOH K . ? HOH A 308 . ? 1_555 ? 28 AC5 6 HOH K . ? HOH A 362 . ? 1_555 ? 29 AC5 6 HOH K . ? HOH A 386 . ? 8_555 ? 30 AC6 4 LEU A 105 ? LEU A 105 . ? 1_555 ? 31 AC6 4 ASP A 164 ? ASP A 164 . ? 1_555 ? 32 AC6 4 HOH K . ? HOH A 366 . ? 1_555 ? 33 AC6 4 HOH K . ? HOH A 381 . ? 1_555 ? 34 AC7 2 ASN A 22 ? ASN A 22 . ? 1_555 ? 35 AC7 2 GLU A 27 ? GLU A 27 . ? 1_555 ? 36 AC8 9 GLY A 44 ? GLY A 44 . ? 1_555 ? 37 AC8 9 VAL A 45 ? VAL A 45 . ? 1_555 ? 38 AC8 9 GLY A 46 ? GLY A 46 . ? 1_555 ? 39 AC8 9 GLY A 98 ? GLY A 98 . ? 1_555 ? 40 AC8 9 PHE A 134 ? PHE A 134 . ? 1_555 ? 41 AC8 9 HIS A 141 ? HIS A 141 . ? 1_555 ? 42 AC8 9 GLU A 142 ? GLU A 142 . ? 1_555 ? 43 AC8 9 ALA J . ? ALA A 209 . ? 1_555 ? 44 AC8 9 HOH K . ? HOH A 313 . ? 1_555 ? 45 AC9 5 ARG A 68 ? ARG A 68 . ? 1_555 ? 46 AC9 5 TYR A 69 ? TYR A 69 . ? 1_555 ? 47 AC9 5 GLY A 98 ? GLY A 98 . ? 1_555 ? 48 AC9 5 LEU A 100 ? LEU A 100 . ? 1_555 ? 49 AC9 5 MET I . ? MET A 208 . ? 1_555 ? # _atom_sites.entry_id 5CPD _atom_sites.fract_transf_matrix[1][1] 0.017070 _atom_sites.fract_transf_matrix[1][2] 0.009855 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019710 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003757 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 CSD 99 99 99 CSD CSD A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 HIS 141 141 141 HIS HIS A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 TYR 169 169 ? ? ? A . n A 1 170 ASP 170 170 ? ? ? A . n A 1 171 LEU 171 171 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD 1 201 201 CD CD A . C 2 CD 1 202 202 CD CD A . D 2 CD 1 203 203 CD CD A . E 3 ACT 1 204 204 ACT ACT A . F 4 NA 1 205 205 NA NA A . G 4 NA 1 206 206 NA NA A . H 5 GOL 1 207 207 GOL GOL A . I 6 MET 1 208 208 MET MET A . J 7 ALA 1 209 209 ALA ALA A . K 8 HOH 1 301 304 HOH HOH A . K 8 HOH 2 302 301 HOH HOH A . K 8 HOH 3 303 302 HOH HOH A . K 8 HOH 4 304 336 HOH HOH A . K 8 HOH 5 305 303 HOH HOH A . K 8 HOH 6 306 306 HOH HOH A . K 8 HOH 7 307 309 HOH HOH A . K 8 HOH 8 308 307 HOH HOH A . K 8 HOH 9 309 310 HOH HOH A . K 8 HOH 10 310 312 HOH HOH A . K 8 HOH 11 311 311 HOH HOH A . K 8 HOH 12 312 342 HOH HOH A . K 8 HOH 13 313 305 HOH HOH A . K 8 HOH 14 314 313 HOH HOH A . K 8 HOH 15 315 316 HOH HOH A . K 8 HOH 16 316 314 HOH HOH A . K 8 HOH 17 317 308 HOH HOH A . K 8 HOH 18 318 317 HOH HOH A . K 8 HOH 19 319 315 HOH HOH A . K 8 HOH 20 320 319 HOH HOH A . K 8 HOH 21 321 324 HOH HOH A . K 8 HOH 22 322 337 HOH HOH A . K 8 HOH 23 323 338 HOH HOH A . K 8 HOH 24 324 318 HOH HOH A . K 8 HOH 25 325 320 HOH HOH A . K 8 HOH 26 326 1 HOH HOH A . K 8 HOH 27 327 327 HOH HOH A . K 8 HOH 28 328 331 HOH HOH A . K 8 HOH 29 329 321 HOH HOH A . K 8 HOH 30 330 328 HOH HOH A . K 8 HOH 31 331 323 HOH HOH A . K 8 HOH 32 332 329 HOH HOH A . K 8 HOH 33 333 326 HOH HOH A . K 8 HOH 34 334 322 HOH HOH A . K 8 HOH 35 335 333 HOH HOH A . K 8 HOH 36 336 325 HOH HOH A . K 8 HOH 37 337 332 HOH HOH A . K 8 HOH 38 338 335 HOH HOH A . K 8 HOH 39 339 346 HOH HOH A . K 8 HOH 40 340 341 HOH HOH A . K 8 HOH 41 341 353 HOH HOH A . K 8 HOH 42 342 334 HOH HOH A . K 8 HOH 43 343 345 HOH HOH A . K 8 HOH 44 344 348 HOH HOH A . K 8 HOH 45 345 330 HOH HOH A . K 8 HOH 46 346 339 HOH HOH A . K 8 HOH 47 347 347 HOH HOH A . K 8 HOH 48 348 350 HOH HOH A . K 8 HOH 49 349 340 HOH HOH A . K 8 HOH 50 350 349 HOH HOH A . K 8 HOH 51 351 356 HOH HOH A . K 8 HOH 52 352 355 HOH HOH A . K 8 HOH 53 353 343 HOH HOH A . K 8 HOH 54 354 344 HOH HOH A . K 8 HOH 55 355 351 HOH HOH A . K 8 HOH 56 356 357 HOH HOH A . K 8 HOH 57 357 370 HOH HOH A . K 8 HOH 58 358 359 HOH HOH A . K 8 HOH 59 359 365 HOH HOH A . K 8 HOH 60 360 358 HOH HOH A . K 8 HOH 61 361 360 HOH HOH A . K 8 HOH 62 362 352 HOH HOH A . K 8 HOH 63 363 354 HOH HOH A . K 8 HOH 64 364 363 HOH HOH A . K 8 HOH 65 365 367 HOH HOH A . K 8 HOH 66 366 381 HOH HOH A . K 8 HOH 67 367 362 HOH HOH A . K 8 HOH 68 368 366 HOH HOH A . K 8 HOH 69 369 361 HOH HOH A . K 8 HOH 70 370 371 HOH HOH A . K 8 HOH 71 371 364 HOH HOH A . K 8 HOH 72 372 369 HOH HOH A . K 8 HOH 73 373 372 HOH HOH A . K 8 HOH 74 374 393 HOH HOH A . K 8 HOH 75 375 368 HOH HOH A . K 8 HOH 76 376 390 HOH HOH A . K 8 HOH 77 377 373 HOH HOH A . K 8 HOH 78 378 375 HOH HOH A . K 8 HOH 79 379 374 HOH HOH A . K 8 HOH 80 380 378 HOH HOH A . K 8 HOH 81 381 380 HOH HOH A . K 8 HOH 82 382 377 HOH HOH A . K 8 HOH 83 383 379 HOH HOH A . K 8 HOH 84 384 376 HOH HOH A . K 8 HOH 85 385 382 HOH HOH A . K 8 HOH 86 386 397 HOH HOH A . K 8 HOH 87 387 386 HOH HOH A . K 8 HOH 88 388 384 HOH HOH A . K 8 HOH 89 389 383 HOH HOH A . K 8 HOH 90 390 387 HOH HOH A . K 8 HOH 91 391 388 HOH HOH A . K 8 HOH 92 392 385 HOH HOH A . K 8 HOH 93 393 392 HOH HOH A . K 8 HOH 94 394 389 HOH HOH A . K 8 HOH 95 395 391 HOH HOH A . K 8 HOH 96 396 394 HOH HOH A . K 8 HOH 97 397 395 HOH HOH A . K 8 HOH 98 398 396 HOH HOH A . K 8 HOH 99 399 398 HOH HOH A . K 8 HOH 100 400 399 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSD _pdbx_struct_mod_residue.label_seq_id 99 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSD _pdbx_struct_mod_residue.auth_seq_id 99 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 150 ? 1 MORE -11 ? 1 'SSA (A^2)' 8530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 393 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 374 ? 1_555 89.9 ? 2 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 OE1 ? A GLU 132 ? A GLU 132 ? 1_555 22.3 ? 3 O ? K HOH . ? A HOH 374 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 OE1 ? A GLU 132 ? A GLU 132 ? 1_555 107.7 ? 4 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 OE2 ? A GLU 132 ? A GLU 132 ? 1_555 20.9 ? 5 O ? K HOH . ? A HOH 374 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 OE2 ? A GLU 132 ? A GLU 132 ? 1_555 105.2 ? 6 OE1 ? A GLU 132 ? A GLU 132 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 OE2 ? A GLU 132 ? A GLU 132 ? 1_555 2.7 ? 7 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 301 ? 8_445 99.3 ? 8 O ? K HOH . ? A HOH 374 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 301 ? 8_445 151.8 ? 9 OE1 ? A GLU 132 ? A GLU 132 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 301 ? 8_445 77.4 ? 10 OE2 ? A GLU 132 ? A GLU 132 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 301 ? 8_445 79.2 ? 11 OE2 ? A GLU 37 ? A GLU 37 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 376 ? 8_445 148.9 ? 12 O ? K HOH . ? A HOH 374 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 376 ? 8_445 109.1 ? 13 OE1 ? A GLU 132 ? A GLU 132 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 376 ? 8_445 127.1 ? 14 OE2 ? A GLU 132 ? A GLU 132 ? 1_555 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 376 ? 8_445 128.1 ? 15 O ? K HOH . ? A HOH 301 ? 8_445 CD ? B CD . ? A CD 201 ? 1_555 O ? K HOH . ? A HOH 376 ? 8_445 52.9 ? 16 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 38.7 ? 17 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 111.8 ? 18 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 82.1 ? 19 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 95.5 ? 20 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 80.7 ? 21 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 106.7 ? 22 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 313 ? 1_555 152.1 ? 23 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 313 ? 1_555 169.1 ? 24 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 313 ? 1_555 90.2 ? 25 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 313 ? 1_555 94.2 ? 26 SG ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 326 ? 1_555 85.7 ? 27 OD2 ? A CSD 99 ? A CSD 99 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 326 ? 1_555 118.8 ? 28 NE2 ? A HIS 141 ? A HIS 141 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 326 ? 1_555 107.5 ? 29 NE2 ? A HIS 145 ? A HIS 145 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 326 ? 1_555 142.5 ? 30 O ? K HOH . ? A HOH 313 ? 1_555 CD ? C CD . ? A CD 202 ? 1_555 O ? K HOH . ? A HOH 326 ? 1_555 70.8 ? 31 O ? A LEU 105 ? A LEU 105 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 OD2 ? A ASP 164 ? A ASP 164 ? 1_555 120.3 ? 32 O ? A LEU 105 ? A LEU 105 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 366 ? 1_555 109.1 ? 33 OD2 ? A ASP 164 ? A ASP 164 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 366 ? 1_555 81.8 ? 34 O ? A LEU 105 ? A LEU 105 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 381 ? 1_555 87.8 ? 35 OD2 ? A ASP 164 ? A ASP 164 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 381 ? 1_555 123.7 ? 36 O ? K HOH . ? A HOH 366 ? 1_555 NA ? G NA . ? A NA 206 ? 1_555 O ? K HOH . ? A HOH 381 ? 1_555 137.4 ? 37 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 56.0 ? 38 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 84.3 ? 39 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 140.2 ? 40 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 124.0 ? 41 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 142.4 ? 42 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 57.2 ? 43 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 303 ? 1_555 167.5 ? 44 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 303 ? 1_555 113.8 ? 45 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 303 ? 1_555 105.3 ? 46 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 303 ? 1_555 58.4 ? 47 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 312 ? 1_555 103.1 ? 48 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 312 ? 1_555 73.4 ? 49 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 312 ? 1_555 119.2 ? 50 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 312 ? 1_555 70.4 ? 51 O ? K HOH . ? A HOH 303 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 O ? K HOH . ? A HOH 312 ? 1_555 65.3 ? 52 OE1 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 NE2 ? A HIS 43 ? A HIS 43 ? 1_555 69.1 ? 53 OE2 ? A GLU 128 ? A GLU 128 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 NE2 ? A HIS 43 ? A HIS 43 ? 1_555 85.7 ? 54 OE1 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 NE2 ? A HIS 43 ? A HIS 43 ? 1_555 77.4 ? 55 OE2 ? A GLU 130 ? A GLU 130 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 NE2 ? A HIS 43 ? A HIS 43 ? 1_555 64.2 ? 56 O ? K HOH . ? A HOH 303 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 NE2 ? A HIS 43 ? A HIS 43 ? 1_555 104.6 ? 57 O ? K HOH . ? A HOH 312 ? 1_555 CD ? D CD . ? A CD 203 ? 1_555 NE2 ? A HIS 43 ? A HIS 43 ? 1_555 52.0 ? 58 O ? A GLY 148 ? A GLY 148 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 308 ? 1_555 117.8 ? 59 O ? A GLY 148 ? A GLY 148 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 362 ? 1_555 77.3 ? 60 O ? K HOH . ? A HOH 308 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 362 ? 1_555 54.6 ? 61 O ? A GLY 148 ? A GLY 148 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 OD1 ? A ASP 159 ? A ASP 159 ? 1_555 75.3 ? 62 O ? K HOH . ? A HOH 308 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 OD1 ? A ASP 159 ? A ASP 159 ? 1_555 163.6 ? 63 O ? K HOH . ? A HOH 362 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 OD1 ? A ASP 159 ? A ASP 159 ? 1_555 124.8 ? 64 O ? A GLY 148 ? A GLY 148 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 386 ? 8_555 119.3 ? 65 O ? K HOH . ? A HOH 308 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 386 ? 8_555 69.1 ? 66 O ? K HOH . ? A HOH 362 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 386 ? 8_555 58.8 ? 67 OD1 ? A ASP 159 ? A ASP 159 ? 1_555 NA ? F NA . ? A NA 205 ? 1_555 O ? K HOH . ? A HOH 386 ? 8_555 96.2 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-08-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0032 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 301 ? ? O A HOH 376 ? ? 1.98 2 1 OE2 A GLU 132 ? ? O A HOH 301 ? ? 2.07 3 1 O A HOH 308 ? ? O A HOH 362 ? ? 2.08 4 1 ND1 A HIS 29 ? ? O A HOH 302 ? ? 2.12 5 1 OE2 A GLU 130 ? ? O A HOH 303 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 345 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 370 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_445 _pdbx_validate_symm_contact.dist 1.99 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 15 ? ? CZ A ARG 15 ? ? NH1 A ARG 15 ? ? 116.78 120.30 -3.52 0.50 N 2 1 NE A ARG 116 ? ? CZ A ARG 116 ? ? NH1 A ARG 116 ? ? 124.86 120.30 4.56 0.50 N 3 1 NE A ARG 116 ? ? CZ A ARG 116 ? ? NH2 A ARG 116 ? ? 114.99 120.30 -5.31 0.50 N 4 1 CB A VAL 147 ? ? CA A VAL 147 ? ? C A VAL 147 ? ? 123.21 111.40 11.81 1.90 N 5 1 CB A ASP 159 ? ? CG A ASP 159 ? ? OD1 A ASP 159 ? ? 132.92 118.30 14.62 0.90 N 6 1 CB A ASP 159 ? ? CG A ASP 159 ? ? OD2 A ASP 159 ? ? 104.58 118.30 -13.72 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 153 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -67.29 _pdbx_validate_torsion.psi 2.12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR 169 ? A TYR 169 2 1 Y 1 A ASP 170 ? A ASP 170 3 1 Y 1 A LEU 171 ? A LEU 171 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 'ACETATE ION' ACT 4 'SODIUM ION' NA 5 GLYCEROL GOL 6 METHIONINE MET 7 ALANINE ALA 8 water HOH #