data_5D23 # _entry.id 5D23 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5D23 WWPDB D_1000212551 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5D2S PDB . unspecified 5D2Q PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5D23 _pdbx_database_status.recvd_initial_deposition_date 2015-08-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Cheng, W.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structures of an all-alpha protein running along the DNA major groove.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw133 _citation.pdbx_database_id_PubMed 26939889 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yu, L.Y.' 1 primary 'Cheng, W.' 2 primary 'Zhou, K.' 3 primary 'Li, W.F.' 4 primary 'Yu, H.M.' 5 primary 'Gao, X.' 6 primary 'Shen, X.' 7 primary 'Wu, Q.' 8 primary 'Chen, Y.' 9 primary 'Zhou, C.Z.' 10 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5D23 _cell.details ? _cell.formula_units_Z ? _cell.length_a 123.180 _cell.length_a_esd ? _cell.length_b 123.180 _cell.length_b_esd ? _cell.length_c 73.574 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fibroin-modulator-binding protein-1' 12047.971 1 ? ? 'UNP RESIDUES 99-193' ? 2 polymer syn 'DNA (26-MER)' 7984.202 1 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Uncharacterized protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)HHHHHHETSEERAARLAK(MSE)SAYAAQRLANESPEQRATRLKR(MSE)SEYAAKRLSSETREQRAIRLAR (MSE)SAYAARRLANETPAQRQARLLR(MSE)SAYAAKRQASKKS ; ;MHHHHHHETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPA QRQARLLRMSAYAAKRQASKKS ; A ? 2 polydeoxyribonucleotide no no ;(DG)(DA)(DA)(DT)(DC)(DT)(DA)(DT)(DG)(DT)(DA)(DA)(DA)(DT)(DT)(DT)(DA)(DC)(DA)(DT) (DA)(DG)(DA)(DT)(DT)(DC) ; GAATCTATGTAAATTTACATAGATTC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLU n 1 9 THR n 1 10 SER n 1 11 GLU n 1 12 GLU n 1 13 ARG n 1 14 ALA n 1 15 ALA n 1 16 ARG n 1 17 LEU n 1 18 ALA n 1 19 LYS n 1 20 MSE n 1 21 SER n 1 22 ALA n 1 23 TYR n 1 24 ALA n 1 25 ALA n 1 26 GLN n 1 27 ARG n 1 28 LEU n 1 29 ALA n 1 30 ASN n 1 31 GLU n 1 32 SER n 1 33 PRO n 1 34 GLU n 1 35 GLN n 1 36 ARG n 1 37 ALA n 1 38 THR n 1 39 ARG n 1 40 LEU n 1 41 LYS n 1 42 ARG n 1 43 MSE n 1 44 SER n 1 45 GLU n 1 46 TYR n 1 47 ALA n 1 48 ALA n 1 49 LYS n 1 50 ARG n 1 51 LEU n 1 52 SER n 1 53 SER n 1 54 GLU n 1 55 THR n 1 56 ARG n 1 57 GLU n 1 58 GLN n 1 59 ARG n 1 60 ALA n 1 61 ILE n 1 62 ARG n 1 63 LEU n 1 64 ALA n 1 65 ARG n 1 66 MSE n 1 67 SER n 1 68 ALA n 1 69 TYR n 1 70 ALA n 1 71 ALA n 1 72 ARG n 1 73 ARG n 1 74 LEU n 1 75 ALA n 1 76 ASN n 1 77 GLU n 1 78 THR n 1 79 PRO n 1 80 ALA n 1 81 GLN n 1 82 ARG n 1 83 GLN n 1 84 ALA n 1 85 ARG n 1 86 LEU n 1 87 LEU n 1 88 ARG n 1 89 MSE n 1 90 SER n 1 91 ALA n 1 92 TYR n 1 93 ALA n 1 94 ALA n 1 95 LYS n 1 96 ARG n 1 97 GLN n 1 98 ALA n 1 99 SER n 1 100 LYS n 1 101 LYS n 1 102 SER n 2 1 DG n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DC n 2 6 DT n 2 7 DA n 2 8 DT n 2 9 DG n 2 10 DT n 2 11 DA n 2 12 DA n 2 13 DA n 2 14 DT n 2 15 DT n 2 16 DT n 2 17 DA n 2 18 DC n 2 19 DA n 2 20 DT n 2 21 DA n 2 22 DG n 2 23 DA n 2 24 DT n 2 25 DT n 2 26 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 102 _entity_src_gen.gene_src_common_name 'Silk moth' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'fmbp-1, Fmbp-1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bombyx mori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7091 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q5FBS0_BOMMO Q5FBS0 ? 1 ;ETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLL RMSAYAAKRQASKKS ; 99 2 PDB 5D23 5D23 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5D23 A 8 ? 102 ? Q5FBS0 99 ? 193 ? 99 193 2 2 5D23 B 1 ? 26 ? 5D23 -17 ? 17 ? -17 17 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5D23 MSE A 1 ? UNP Q5FBS0 ? ? 'expression tag' 92 1 1 5D23 HIS A 2 ? UNP Q5FBS0 ? ? 'expression tag' 93 2 1 5D23 HIS A 3 ? UNP Q5FBS0 ? ? 'expression tag' 94 3 1 5D23 HIS A 4 ? UNP Q5FBS0 ? ? 'expression tag' 95 4 1 5D23 HIS A 5 ? UNP Q5FBS0 ? ? 'expression tag' 96 5 1 5D23 HIS A 6 ? UNP Q5FBS0 ? ? 'expression tag' 97 6 1 5D23 HIS A 7 ? UNP Q5FBS0 ? ? 'expression tag' 98 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5D23 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '15% PEG4000, 20% 2-propanol, 0.1M sodium citrate pH5.6' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5D23 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15446 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] -0.90 _refine.aniso_B[1][2] -0.45 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.90 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 2.92 _refine.B_iso_max ? _refine.B_iso_mean 47.583 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5D23 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.95 _refine.ls_d_res_low 27.45 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14672 _refine.ls_number_reflns_R_free 774 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.14 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20616 _refine.ls_R_factor_R_free 0.23192 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20483 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.136 _refine.pdbx_overall_ESU_R_Free 0.128 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.537 _refine.overall_SU_ML 0.100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 508 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 1127 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 27.45 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.015 1101 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 821 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.299 1.525 1587 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.209 3.000 1884 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.221 5.000 63 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 25.064 17.600 25 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.944 15.000 91 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 13.507 15.000 14 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.062 0.200 152 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 881 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 254 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.580 3.086 255 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.567 3.077 254 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.503 4.609 317 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.500 4.618 318 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.641 2.700 845 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.642 2.701 844 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.533 4.025 1270 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 6.317 24.787 1481 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.161 24.163 1432 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.001 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_R_work 1081 _refine_ls_shell.percent_reflns_obs 99.04 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.277 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5D23 _struct.title 'The crystal structure of STPR from Bombyx mori in complex with 13-bp DNA derived from the +290 site of fibroin gene' _struct.pdbx_descriptor 'Fibroin-modulator-binding protein-1/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5D23 _struct_keywords.text 'Protein-DNA complex, All a-helix, Major groove binding pattern, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 36 ? GLU A 54 ? ARG A 127 GLU A 145 1 ? 19 HELX_P HELX_P2 AA2 THR A 55 ? GLU A 77 ? THR A 146 GLU A 168 1 ? 23 HELX_P HELX_P3 AA3 THR A 78 ? SER A 99 ? THR A 169 SER A 190 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ARG 42 C ? ? ? 1_555 A MSE 43 N ? ? A ARG 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale both ? A MSE 43 C ? ? ? 1_555 A SER 44 N ? ? A MSE 134 A SER 135 1_555 ? ? ? ? ? ? ? 1.335 ? covale3 covale both ? A ARG 65 C ? ? ? 1_555 A MSE 66 N ? ? A ARG 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A MSE 66 C ? ? ? 1_555 A SER 67 N ? ? A MSE 157 A SER 158 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale both ? A ARG 88 C ? ? ? 1_555 A MSE 89 N ? ? A ARG 179 A MSE 180 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale both ? A MSE 89 C ? ? ? 1_555 A SER 90 N ? ? A MSE 180 A SER 181 1_555 ? ? ? ? ? ? ? 1.334 ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 B DC 26 N3 ? ? B DG -17 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 B DC 26 O2 ? ? B DG -17 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 B DC 26 N4 ? ? B DG -17 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 B DT 25 N3 ? ? B DA -16 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 B DT 25 O4 ? ? B DA -16 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DA 3 N1 ? ? ? 1_555 B DT 24 N3 ? ? B DA -15 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 3 N6 ? ? ? 1_555 B DT 24 O4 ? ? B DA -15 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DT 4 N3 ? ? ? 1_555 B DA 23 N1 ? ? B DT -14 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DT 4 O4 ? ? ? 1_555 B DA 23 N6 ? ? B DT -14 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DC 5 N3 ? ? ? 1_555 B DG 22 N1 ? ? B DC -13 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DC 5 N4 ? ? ? 1_555 B DG 22 O6 ? ? B DC -13 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DC 5 O2 ? ? ? 1_555 B DG 22 N2 ? ? B DC -13 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DT 6 N3 ? ? ? 1_555 B DA 21 N1 ? ? B DT -12 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DT 6 O4 ? ? ? 1_555 B DA 21 N6 ? ? B DT -12 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DA 7 N1 ? ? ? 1_555 B DT 20 N3 ? ? B DA -11 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DA 7 N6 ? ? ? 1_555 B DT 20 O4 ? ? B DA -11 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DT 8 N3 ? ? ? 1_555 B DA 19 N1 ? ? B DT -10 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DT 8 O4 ? ? ? 1_555 B DA 19 N6 ? ? B DT -10 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DG 9 N1 ? ? ? 1_555 B DC 18 N3 ? ? B DG -9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DG 9 N2 ? ? ? 1_555 B DC 18 O2 ? ? B DG -9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 9 O6 ? ? ? 1_555 B DC 18 N4 ? ? B DG -9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DT 10 N3 ? ? ? 1_555 B DA 17 N1 ? ? B DT -8 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DT 10 O4 ? ? ? 1_555 B DA 17 N6 ? ? B DT -8 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DA 11 N1 ? ? ? 1_555 B DT 16 N3 ? ? B DA -7 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DA 11 N6 ? ? ? 1_555 B DT 16 O4 ? ? B DA -7 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DA 12 N1 ? ? ? 1_555 B DT 15 N3 ? ? B DA -6 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DA 12 N6 ? ? ? 1_555 B DT 15 O4 ? ? B DA -6 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5D23 _atom_sites.fract_transf_matrix[1][1] 0.008118 _atom_sites.fract_transf_matrix[1][2] 0.004687 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009374 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013592 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 92 ? ? ? A . n A 1 2 HIS 2 93 ? ? ? A . n A 1 3 HIS 3 94 ? ? ? A . n A 1 4 HIS 4 95 ? ? ? A . n A 1 5 HIS 5 96 ? ? ? A . n A 1 6 HIS 6 97 ? ? ? A . n A 1 7 HIS 7 98 ? ? ? A . n A 1 8 GLU 8 99 ? ? ? A . n A 1 9 THR 9 100 ? ? ? A . n A 1 10 SER 10 101 ? ? ? A . n A 1 11 GLU 11 102 ? ? ? A . n A 1 12 GLU 12 103 ? ? ? A . n A 1 13 ARG 13 104 ? ? ? A . n A 1 14 ALA 14 105 ? ? ? A . n A 1 15 ALA 15 106 ? ? ? A . n A 1 16 ARG 16 107 ? ? ? A . n A 1 17 LEU 17 108 ? ? ? A . n A 1 18 ALA 18 109 ? ? ? A . n A 1 19 LYS 19 110 ? ? ? A . n A 1 20 MSE 20 111 ? ? ? A . n A 1 21 SER 21 112 ? ? ? A . n A 1 22 ALA 22 113 ? ? ? A . n A 1 23 TYR 23 114 ? ? ? A . n A 1 24 ALA 24 115 ? ? ? A . n A 1 25 ALA 25 116 ? ? ? A . n A 1 26 GLN 26 117 ? ? ? A . n A 1 27 ARG 27 118 ? ? ? A . n A 1 28 LEU 28 119 ? ? ? A . n A 1 29 ALA 29 120 ? ? ? A . n A 1 30 ASN 30 121 ? ? ? A . n A 1 31 GLU 31 122 ? ? ? A . n A 1 32 SER 32 123 ? ? ? A . n A 1 33 PRO 33 124 ? ? ? A . n A 1 34 GLU 34 125 ? ? ? A . n A 1 35 GLN 35 126 ? ? ? A . n A 1 36 ARG 36 127 127 ARG ARG A . n A 1 37 ALA 37 128 128 ALA ALA A . n A 1 38 THR 38 129 129 THR THR A . n A 1 39 ARG 39 130 130 ARG ARG A . n A 1 40 LEU 40 131 131 LEU LEU A . n A 1 41 LYS 41 132 132 LYS LYS A . n A 1 42 ARG 42 133 133 ARG ARG A . n A 1 43 MSE 43 134 134 MSE MSE A . n A 1 44 SER 44 135 135 SER SER A . n A 1 45 GLU 45 136 136 GLU GLU A . n A 1 46 TYR 46 137 137 TYR TYR A . n A 1 47 ALA 47 138 138 ALA ALA A . n A 1 48 ALA 48 139 139 ALA ALA A . n A 1 49 LYS 49 140 140 LYS LYS A . n A 1 50 ARG 50 141 141 ARG ARG A . n A 1 51 LEU 51 142 142 LEU LEU A . n A 1 52 SER 52 143 143 SER SER A . n A 1 53 SER 53 144 144 SER SER A . n A 1 54 GLU 54 145 145 GLU GLU A . n A 1 55 THR 55 146 146 THR THR A . n A 1 56 ARG 56 147 147 ARG ARG A . n A 1 57 GLU 57 148 148 GLU GLU A . n A 1 58 GLN 58 149 149 GLN GLN A . n A 1 59 ARG 59 150 150 ARG ARG A . n A 1 60 ALA 60 151 151 ALA ALA A . n A 1 61 ILE 61 152 152 ILE ILE A . n A 1 62 ARG 62 153 153 ARG ARG A . n A 1 63 LEU 63 154 154 LEU LEU A . n A 1 64 ALA 64 155 155 ALA ALA A . n A 1 65 ARG 65 156 156 ARG ARG A . n A 1 66 MSE 66 157 157 MSE MSE A . n A 1 67 SER 67 158 158 SER SER A . n A 1 68 ALA 68 159 159 ALA ALA A . n A 1 69 TYR 69 160 160 TYR TYR A . n A 1 70 ALA 70 161 161 ALA ALA A . n A 1 71 ALA 71 162 162 ALA ALA A . n A 1 72 ARG 72 163 163 ARG ARG A . n A 1 73 ARG 73 164 164 ARG ARG A . n A 1 74 LEU 74 165 165 LEU LEU A . n A 1 75 ALA 75 166 166 ALA ALA A . n A 1 76 ASN 76 167 167 ASN ASN A . n A 1 77 GLU 77 168 168 GLU GLU A . n A 1 78 THR 78 169 169 THR THR A . n A 1 79 PRO 79 170 170 PRO PRO A . n A 1 80 ALA 80 171 171 ALA ALA A . n A 1 81 GLN 81 172 172 GLN GLN A . n A 1 82 ARG 82 173 173 ARG ARG A . n A 1 83 GLN 83 174 174 GLN GLN A . n A 1 84 ALA 84 175 175 ALA ALA A . n A 1 85 ARG 85 176 176 ARG ARG A . n A 1 86 LEU 86 177 177 LEU LEU A . n A 1 87 LEU 87 178 178 LEU LEU A . n A 1 88 ARG 88 179 179 ARG ARG A . n A 1 89 MSE 89 180 180 MSE MSE A . n A 1 90 SER 90 181 181 SER SER A . n A 1 91 ALA 91 182 182 ALA ALA A . n A 1 92 TYR 92 183 183 TYR TYR A . n A 1 93 ALA 93 184 184 ALA ALA A . n A 1 94 ALA 94 185 185 ALA ALA A . n A 1 95 LYS 95 186 186 LYS LYS A . n A 1 96 ARG 96 187 187 ARG ARG A . n A 1 97 GLN 97 188 188 GLN GLN A . n A 1 98 ALA 98 189 189 ALA ALA A . n A 1 99 SER 99 190 190 SER SER A . n A 1 100 LYS 100 191 ? ? ? A . n A 1 101 LYS 101 192 ? ? ? A . n A 1 102 SER 102 193 ? ? ? A . n B 2 1 DG 1 -17 -17 DG DG B . n B 2 2 DA 2 -16 -16 DA DA B . n B 2 3 DA 3 -15 -15 DA DA B . n B 2 4 DT 4 -14 -14 DT DT B . n B 2 5 DC 5 -13 -13 DC DC B . n B 2 6 DT 6 -12 -12 DT DT B . n B 2 7 DA 7 -11 -11 DA DA B . n B 2 8 DT 8 -10 -10 DT DT B . n B 2 9 DG 9 -9 -9 DG DG B . n B 2 10 DT 10 -8 -8 DT DT B . n B 2 11 DA 11 -7 -7 DA DA B . n B 2 12 DA 12 -6 -6 DA DA B . n B 2 13 DA 13 -5 -5 DA DA B . n B 2 14 DT 14 5 5 DT DT B . n B 2 15 DT 15 6 6 DT DT B . n B 2 16 DT 16 7 7 DT DT B . n B 2 17 DA 17 8 8 DA DA B . n B 2 18 DC 18 9 9 DC DC B . n B 2 19 DA 19 10 10 DA DA B . n B 2 20 DT 20 11 11 DT DT B . n B 2 21 DA 21 12 12 DA DA B . n B 2 22 DG 22 13 13 DG DG B . n B 2 23 DA 23 14 14 DA DA B . n B 2 24 DT 24 15 15 DT DT B . n B 2 25 DT 25 16 16 DT DT B . n B 2 26 DC 26 17 17 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 21 HOH HOH A . C 3 HOH 2 202 36 HOH HOH A . C 3 HOH 3 203 50 HOH HOH A . C 3 HOH 4 204 28 HOH HOH A . C 3 HOH 5 205 11 HOH HOH A . C 3 HOH 6 206 37 HOH HOH A . C 3 HOH 7 207 10 HOH HOH A . C 3 HOH 8 208 65 HOH HOH A . C 3 HOH 9 209 59 HOH HOH A . C 3 HOH 10 210 72 HOH HOH A . C 3 HOH 11 211 27 HOH HOH A . C 3 HOH 12 212 8 HOH HOH A . C 3 HOH 13 213 51 HOH HOH A . C 3 HOH 14 214 3 HOH HOH A . C 3 HOH 15 215 31 HOH HOH A . C 3 HOH 16 216 16 HOH HOH A . C 3 HOH 17 217 17 HOH HOH A . C 3 HOH 18 218 68 HOH HOH A . C 3 HOH 19 219 47 HOH HOH A . C 3 HOH 20 220 61 HOH HOH A . C 3 HOH 21 221 34 HOH HOH A . C 3 HOH 22 222 52 HOH HOH A . C 3 HOH 23 223 60 HOH HOH A . C 3 HOH 24 224 77 HOH HOH A . C 3 HOH 25 225 69 HOH HOH A . C 3 HOH 26 226 87 HOH HOH A . C 3 HOH 27 227 25 HOH HOH A . C 3 HOH 28 228 76 HOH HOH A . C 3 HOH 29 229 85 HOH HOH A . C 3 HOH 30 230 81 HOH HOH A . C 3 HOH 31 231 62 HOH HOH A . C 3 HOH 32 232 86 HOH HOH A . C 3 HOH 33 233 23 HOH HOH A . C 3 HOH 34 234 18 HOH HOH A . C 3 HOH 35 235 89 HOH HOH A . C 3 HOH 36 236 84 HOH HOH A . C 3 HOH 37 237 67 HOH HOH A . C 3 HOH 38 238 92 HOH HOH A . C 3 HOH 39 239 66 HOH HOH A . C 3 HOH 40 240 88 HOH HOH A . D 3 HOH 1 101 4 HOH HOH B . D 3 HOH 2 102 49 HOH HOH B . D 3 HOH 3 103 83 HOH HOH B . D 3 HOH 4 104 24 HOH HOH B . D 3 HOH 5 105 6 HOH HOH B . D 3 HOH 6 106 14 HOH HOH B . D 3 HOH 7 107 79 HOH HOH B . D 3 HOH 8 108 26 HOH HOH B . D 3 HOH 9 109 78 HOH HOH B . D 3 HOH 10 110 32 HOH HOH B . D 3 HOH 11 111 2 HOH HOH B . D 3 HOH 12 112 38 HOH HOH B . D 3 HOH 13 113 56 HOH HOH B . D 3 HOH 14 114 5 HOH HOH B . D 3 HOH 15 115 22 HOH HOH B . D 3 HOH 16 116 13 HOH HOH B . D 3 HOH 17 117 48 HOH HOH B . D 3 HOH 18 118 71 HOH HOH B . D 3 HOH 19 119 1 HOH HOH B . D 3 HOH 20 120 70 HOH HOH B . D 3 HOH 21 121 35 HOH HOH B . D 3 HOH 22 122 41 HOH HOH B . D 3 HOH 23 123 58 HOH HOH B . D 3 HOH 24 124 20 HOH HOH B . D 3 HOH 25 125 90 HOH HOH B . D 3 HOH 26 126 42 HOH HOH B . D 3 HOH 27 127 46 HOH HOH B . D 3 HOH 28 128 15 HOH HOH B . D 3 HOH 29 129 80 HOH HOH B . D 3 HOH 30 130 7 HOH HOH B . D 3 HOH 31 131 19 HOH HOH B . D 3 HOH 32 132 33 HOH HOH B . D 3 HOH 33 133 57 HOH HOH B . D 3 HOH 34 134 39 HOH HOH B . D 3 HOH 35 135 73 HOH HOH B . D 3 HOH 36 136 54 HOH HOH B . D 3 HOH 37 137 44 HOH HOH B . D 3 HOH 38 138 43 HOH HOH B . D 3 HOH 39 139 29 HOH HOH B . D 3 HOH 40 140 9 HOH HOH B . D 3 HOH 41 141 91 HOH HOH B . D 3 HOH 42 142 74 HOH HOH B . D 3 HOH 43 143 40 HOH HOH B . D 3 HOH 44 144 55 HOH HOH B . D 3 HOH 45 145 12 HOH HOH B . D 3 HOH 46 146 45 HOH HOH B . D 3 HOH 47 147 63 HOH HOH B . D 3 HOH 48 148 30 HOH HOH B . D 3 HOH 49 149 53 HOH HOH B . D 3 HOH 50 150 64 HOH HOH B . D 3 HOH 51 151 75 HOH HOH B . D 3 HOH 52 152 82 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 43 A MSE 134 ? MET 'modified residue' 2 A MSE 66 A MSE 157 ? MET 'modified residue' 3 A MSE 89 A MSE 180 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2410 ? 1 MORE -23 ? 1 'SSA (A^2)' 8780 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 211 ? C HOH . 2 1 A HOH 229 ? C HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-03-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 14.4050 -21.0890 -23.0120 1.0755 ? 0.3778 ? 0.4146 ? 1.5180 ? -0.2727 ? 0.5545 ? 48.2355 ? -18.1626 ? 57.1778 ? 92.4499 ? -55.7817 ? 81.4850 ? 0.9237 ? -0.0584 ? -0.7491 ? -3.1082 ? -0.5631 ? -1.0739 ? 2.2317 ? 0.2263 ? -0.3606 ? 2 'X-RAY DIFFRACTION' ? refined 13.8410 -19.8940 -17.2120 0.1264 ? -0.0389 ? 0.2200 ? 0.4070 ? -0.0724 ? 0.4167 ? 9.6920 ? 7.8828 ? 5.3117 ? 13.9488 ? -2.2687 ? 8.6799 ? -0.1474 ? 0.9157 ? -0.6670 ? -0.5975 ? -0.1898 ? -1.3123 ? 0.3473 ? 1.3409 ? 0.3372 ? 3 'X-RAY DIFFRACTION' ? refined 9.0480 -18.2340 -7.3500 0.0242 ? -0.0327 ? 0.0647 ? 0.1857 ? 0.0317 ? 0.3007 ? 13.2734 ? 7.1572 ? -10.7359 ? 9.3769 ? 2.8285 ? 22.1438 ? 0.0381 ? -0.9466 ? -0.9524 ? 0.0778 ? -0.6066 ? -0.6589 ? 0.0736 ? 0.6037 ? 0.5686 ? 4 'X-RAY DIFFRACTION' ? refined 1.2480 -16.4670 2.3760 0.2025 ? -0.2038 ? -0.0940 ? 0.2999 ? 0.0596 ? 0.1125 ? 17.0245 ? -7.2829 ? -2.1258 ? 12.2314 ? -4.4404 ? 4.1897 ? -0.0842 ? -0.6528 ? -0.4750 ? 0.8496 ? -0.2568 ? -0.5137 ? -0.4745 ? 0.5587 ? 0.3410 ? 5 'X-RAY DIFFRACTION' ? refined -6.3260 -13.3080 -7.8410 0.2339 ? -0.1089 ? 0.0052 ? 0.1345 ? -0.0363 ? 0.1309 ? 8.3796 ? 1.8338 ? 6.8299 ? 5.0791 ? 0.5732 ? 8.8279 ? -0.0707 ? -0.4464 ? 0.1254 ? -0.2114 ? -0.2712 ? 0.1066 ? -0.5653 ? -0.0072 ? 0.3418 ? 6 'X-RAY DIFFRACTION' ? refined -16.2080 -13.9740 -23.4460 0.5227 ? -0.0580 ? -0.2170 ? 0.0366 ? 0.0310 ? 0.2390 ? 7.2006 ? 6.3596 ? 3.1539 ? 10.5120 ? 11.6353 ? 17.3867 ? -0.7775 ? 0.1308 ? 0.4303 ? -0.9804 ? 0.4025 ? 0.4703 ? -0.8277 ? 0.5511 ? 0.3750 ? 7 'X-RAY DIFFRACTION' ? refined -18.5230 -22.5630 -25.1550 0.3639 ? -0.0852 ? -0.0895 ? 0.0946 ? -0.0052 ? 0.1358 ? 2.0197 ? -0.5900 ? 1.9714 ? 14.1372 ? -5.6050 ? 3.7355 ? -0.3699 ? 0.1113 ? 0.1807 ? -1.0364 ? 0.3540 ? 0.4139 ? 0.0484 ? -0.0297 ? 0.0158 ? 8 'X-RAY DIFFRACTION' ? refined -13.6010 -33.5450 -19.9780 0.1785 ? 0.0220 ? -0.0237 ? 0.1028 ? -0.0521 ? 0.0674 ? 1.2760 ? -3.0820 ? 2.1975 ? 22.5640 ? -6.2534 ? 7.1684 ? -0.1599 ? -0.0332 ? 0.0289 ? 0.3373 ? 0.2733 ? -0.4786 ? 0.0184 ? 0.1583 ? -0.1134 ? 9 'X-RAY DIFFRACTION' ? refined -5.3310 -19.1270 -14.4990 0.2279 ? -0.1039 ? 0.0362 ? 0.1975 ? -0.0756 ? 0.1558 ? 5.6018 ? 4.4479 ? 1.0755 ? 3.8589 ? 0.7991 ? 1.7013 ? -0.3708 ? 0.2232 ? -0.3133 ? -0.5434 ? 0.3081 ? -0.2707 ? -0.1080 ? 0.2624 ? 0.0627 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 127 ? ? A 129 ? ? 2 'X-RAY DIFFRACTION' 2 ? ? A 130 ? ? A 134 ? ? 3 'X-RAY DIFFRACTION' 3 ? ? A 135 ? ? A 142 ? ? 4 'X-RAY DIFFRACTION' 4 ? ? A 143 ? ? A 148 ? ? 5 'X-RAY DIFFRACTION' 5 ? ? A 149 ? ? A 163 ? ? 6 'X-RAY DIFFRACTION' 6 ? ? A 164 ? ? A 172 ? ? 7 'X-RAY DIFFRACTION' 7 ? ? A 173 ? ? A 178 ? ? 8 'X-RAY DIFFRACTION' 8 ? ? A 179 ? ? A 190 ? ? 9 'X-RAY DIFFRACTION' 9 ? ? B -17 ? ? B 17 ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 13 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 13 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 13 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.51 _pdbx_validate_rmsd_angle.angle_target_value 102.40 _pdbx_validate_rmsd_angle.angle_deviation -4.89 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 132 ? CG ? A LYS 41 CG 2 1 Y 1 A LYS 132 ? CD ? A LYS 41 CD 3 1 Y 1 A LYS 132 ? CE ? A LYS 41 CE 4 1 Y 1 A LYS 132 ? NZ ? A LYS 41 NZ 5 1 Y 1 A GLU 136 ? CG ? A GLU 45 CG 6 1 Y 1 A GLU 136 ? CD ? A GLU 45 CD 7 1 Y 1 A GLU 136 ? OE1 ? A GLU 45 OE1 8 1 Y 1 A GLU 136 ? OE2 ? A GLU 45 OE2 9 1 Y 1 B DT 5 ? P ? B DT 14 P 10 1 Y 1 B DT 5 ? OP1 ? B DT 14 OP1 11 1 Y 1 B DT 5 ? OP2 ? B DT 14 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 92 ? A MSE 1 2 1 Y 1 A HIS 93 ? A HIS 2 3 1 Y 1 A HIS 94 ? A HIS 3 4 1 Y 1 A HIS 95 ? A HIS 4 5 1 Y 1 A HIS 96 ? A HIS 5 6 1 Y 1 A HIS 97 ? A HIS 6 7 1 Y 1 A HIS 98 ? A HIS 7 8 1 Y 1 A GLU 99 ? A GLU 8 9 1 Y 1 A THR 100 ? A THR 9 10 1 Y 1 A SER 101 ? A SER 10 11 1 Y 1 A GLU 102 ? A GLU 11 12 1 Y 1 A GLU 103 ? A GLU 12 13 1 Y 1 A ARG 104 ? A ARG 13 14 1 Y 1 A ALA 105 ? A ALA 14 15 1 Y 1 A ALA 106 ? A ALA 15 16 1 Y 1 A ARG 107 ? A ARG 16 17 1 Y 1 A LEU 108 ? A LEU 17 18 1 Y 1 A ALA 109 ? A ALA 18 19 1 Y 1 A LYS 110 ? A LYS 19 20 1 Y 1 A MSE 111 ? A MSE 20 21 1 Y 1 A SER 112 ? A SER 21 22 1 Y 1 A ALA 113 ? A ALA 22 23 1 Y 1 A TYR 114 ? A TYR 23 24 1 Y 1 A ALA 115 ? A ALA 24 25 1 Y 1 A ALA 116 ? A ALA 25 26 1 Y 1 A GLN 117 ? A GLN 26 27 1 Y 1 A ARG 118 ? A ARG 27 28 1 Y 1 A LEU 119 ? A LEU 28 29 1 Y 1 A ALA 120 ? A ALA 29 30 1 Y 1 A ASN 121 ? A ASN 30 31 1 Y 1 A GLU 122 ? A GLU 31 32 1 Y 1 A SER 123 ? A SER 32 33 1 Y 1 A PRO 124 ? A PRO 33 34 1 Y 1 A GLU 125 ? A GLU 34 35 1 Y 1 A GLN 126 ? A GLN 35 36 1 Y 1 A LYS 191 ? A LYS 100 37 1 Y 1 A LYS 192 ? A LYS 101 38 1 Y 1 A SER 193 ? A SER 102 # _ndb_struct_conf_na.entry_id 5D23 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 B DC 26 1_555 -0.285 -0.225 -0.213 4.203 -7.309 -1.119 1 B_DG-17:DC17_B B -17 ? B 17 ? 19 1 1 B DA 2 1_555 B DT 25 1_555 0.086 -0.115 -0.009 5.411 -9.419 1.823 2 B_DA-16:DT16_B B -16 ? B 16 ? 20 1 1 B DA 3 1_555 B DT 24 1_555 0.041 -0.132 0.108 1.321 -15.132 4.263 3 B_DA-15:DT15_B B -15 ? B 15 ? 20 1 1 B DT 4 1_555 B DA 23 1_555 0.075 -0.143 0.065 -1.395 -10.762 4.636 4 B_DT-14:DA14_B B -14 ? B 14 ? 20 1 1 B DC 5 1_555 B DG 22 1_555 0.160 -0.142 0.070 -4.648 -9.499 -0.720 5 B_DC-13:DG13_B B -13 ? B 13 ? 19 1 1 B DT 6 1_555 B DA 21 1_555 0.038 -0.140 0.195 -0.263 -5.768 2.148 6 B_DT-12:DA12_B B -12 ? B 12 ? 20 1 1 B DA 7 1_555 B DT 20 1_555 0.098 -0.064 0.105 -0.650 -12.278 -2.472 7 B_DA-11:DT11_B B -11 ? B 11 ? 20 1 1 B DT 8 1_555 B DA 19 1_555 0.060 -0.119 0.065 2.436 -8.142 1.449 8 B_DT-10:DA10_B B -10 ? B 10 ? 20 1 1 B DG 9 1_555 B DC 18 1_555 -0.202 -0.144 0.154 1.500 -10.824 0.622 9 B_DG-9:DC9_B B -9 ? B 9 ? 19 1 1 B DT 10 1_555 B DA 17 1_555 0.074 -0.110 -0.300 7.688 3.261 -0.463 10 B_DT-8:DA8_B B -8 ? B 8 ? 20 1 1 B DA 11 1_555 B DT 16 1_555 0.021 -0.069 0.114 16.550 -19.112 -0.832 11 B_DA-7:DT7_B B -7 ? B 7 ? 20 1 1 B DA 12 1_555 B DT 15 1_555 0.343 -0.127 0.274 20.362 -9.479 1.447 12 B_DA-6:DT6_B B -6 ? B 6 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 B DC 26 1_555 B DA 2 1_555 B DT 25 1_555 0.203 -0.358 3.234 -0.896 -1.135 32.102 -0.446 -0.525 3.238 -2.051 1.620 32.134 1 BB_DG-17DA-16:DT16DC17_BB B -17 ? B 17 ? B -16 ? B 16 ? 1 B DA 2 1_555 B DT 25 1_555 B DA 3 1_555 B DT 24 1_555 -0.467 -0.083 3.248 -2.942 -1.354 41.090 0.028 0.346 3.274 -1.925 4.183 41.212 2 BB_DA-16DA-15:DT15DT16_BB B -16 ? B 16 ? B -15 ? B 15 ? 1 B DA 3 1_555 B DT 24 1_555 B DT 4 1_555 B DA 23 1_555 0.214 -0.620 3.334 0.169 -4.231 34.048 -0.368 -0.335 3.385 -7.191 -0.288 34.302 3 BB_DA-15DT-14:DA14DT15_BB B -15 ? B 15 ? B -14 ? B 14 ? 1 B DT 4 1_555 B DA 23 1_555 B DC 5 1_555 B DG 22 1_555 0.104 -0.204 3.362 0.463 -1.675 39.782 -0.100 -0.098 3.368 -2.460 -0.680 39.819 4 BB_DT-14DC-13:DG13DA14_BB B -14 ? B 14 ? B -13 ? B 13 ? 1 B DC 5 1_555 B DG 22 1_555 B DT 6 1_555 B DA 21 1_555 -0.370 -0.526 3.243 -0.421 0.551 29.215 -1.160 0.643 3.238 1.093 0.834 29.223 5 BB_DC-13DT-12:DA12DG13_BB B -13 ? B 13 ? B -12 ? B 12 ? 1 B DT 6 1_555 B DA 21 1_555 B DA 7 1_555 B DT 20 1_555 -1.005 0.736 3.343 -3.652 -2.399 40.811 1.319 1.024 3.370 -3.428 5.220 41.034 6 BB_DT-12DA-11:DT11DA12_BB B -12 ? B 12 ? B -11 ? B 11 ? 1 B DA 7 1_555 B DT 20 1_555 B DT 8 1_555 B DA 19 1_555 0.614 -0.508 3.244 -0.601 -2.890 32.140 -0.403 -1.212 3.265 -5.207 1.083 32.272 7 BB_DA-11DT-10:DA10DT11_BB B -11 ? B 11 ? B -10 ? B 10 ? 1 B DT 8 1_555 B DA 19 1_555 B DG 9 1_555 B DC 18 1_555 -0.052 -0.339 3.326 0.885 7.261 32.386 -1.821 0.240 3.175 12.814 -1.563 33.180 8 BB_DT-10DG-9:DC9DA10_BB B -10 ? B 10 ? B -9 ? B 9 ? 1 B DG 9 1_555 B DC 18 1_555 B DT 10 1_555 B DA 17 1_555 0.712 -0.146 3.198 4.885 -3.433 33.719 0.291 -0.444 3.265 -5.861 -8.341 34.229 9 BB_DG-9DT-8:DA8DC9_BB B -9 ? B 9 ? B -8 ? B 8 ? 1 B DT 10 1_555 B DA 17 1_555 B DA 11 1_555 B DT 16 1_555 -1.217 1.114 3.176 -2.284 -7.159 37.507 2.559 1.586 2.988 -10.999 3.508 38.226 10 BB_DT-8DA-7:DT7DA8_BB B -8 ? B 8 ? B -7 ? B 7 ? 1 B DA 11 1_555 B DT 16 1_555 B DA 12 1_555 B DT 15 1_555 0.866 0.072 3.167 0.258 -6.403 37.511 0.898 -1.298 3.119 -9.868 -0.397 38.035 11 BB_DA-7DA-6:DT6DT7_BB B -7 ? B 7 ? B -6 ? B 6 ? # _pdbx_audit_support.funding_organization ? _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #