data_5D2S # _entry.id 5D2S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5D2S pdb_00005d2s 10.2210/pdb5d2s/pdb WWPDB D_1000212552 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-23 2 'Structure model' 1 1 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' database_2 5 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' 4 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5D2S _pdbx_database_status.recvd_initial_deposition_date 2015-08-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5D23 PDB . unspecified 5D2Q PDB . # _audit_author.name 'Cheng, W.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structures of an all-alpha protein running along the DNA major groove.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw133 _citation.pdbx_database_id_PubMed 26939889 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yu, L.Y.' 1 ? primary 'Cheng, W.' 2 ? primary 'Zhou, K.' 3 ? primary 'Li, W.F.' 4 ? primary 'Yu, H.M.' 5 ? primary 'Gao, X.' 6 ? primary 'Shen, X.' 7 ? primary 'Wu, Q.' 8 ? primary 'Chen, Y.' 9 ? primary 'Zhou, C.Z.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fibroin-modulator-binding protein-1' 11813.495 1 ? ? 'UNP RESIDUES 99-193' ? 2 polymer syn 'DNA (36-MER)' 11073.174 1 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Uncharacterized protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MHHHHHHETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPA QRQARLLRMSAYAAKRQASKKS ; ;MHHHHHHETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPA QRQARLLRMSAYAAKRQASKKS ; A ? 2 polydeoxyribonucleotide no no ;(DT)(DG)(DT)(DA)(DT)(DG)(DT)(DA)(DT)(DG)(DT)(DA)(DT)(DG)(DT)(DA)(DT)(DG)(DC)(DA) (DT)(DA)(DC)(DA)(DT)(DA)(DC)(DA)(DT)(DA)(DC)(DA)(DT)(DA)(DC)(DA) ; TGTATGTATGTATGTATGCATACATACATACATACA B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLU n 1 9 THR n 1 10 SER n 1 11 GLU n 1 12 GLU n 1 13 ARG n 1 14 ALA n 1 15 ALA n 1 16 ARG n 1 17 LEU n 1 18 ALA n 1 19 LYS n 1 20 MET n 1 21 SER n 1 22 ALA n 1 23 TYR n 1 24 ALA n 1 25 ALA n 1 26 GLN n 1 27 ARG n 1 28 LEU n 1 29 ALA n 1 30 ASN n 1 31 GLU n 1 32 SER n 1 33 PRO n 1 34 GLU n 1 35 GLN n 1 36 ARG n 1 37 ALA n 1 38 THR n 1 39 ARG n 1 40 LEU n 1 41 LYS n 1 42 ARG n 1 43 MET n 1 44 SER n 1 45 GLU n 1 46 TYR n 1 47 ALA n 1 48 ALA n 1 49 LYS n 1 50 ARG n 1 51 LEU n 1 52 SER n 1 53 SER n 1 54 GLU n 1 55 THR n 1 56 ARG n 1 57 GLU n 1 58 GLN n 1 59 ARG n 1 60 ALA n 1 61 ILE n 1 62 ARG n 1 63 LEU n 1 64 ALA n 1 65 ARG n 1 66 MET n 1 67 SER n 1 68 ALA n 1 69 TYR n 1 70 ALA n 1 71 ALA n 1 72 ARG n 1 73 ARG n 1 74 LEU n 1 75 ALA n 1 76 ASN n 1 77 GLU n 1 78 THR n 1 79 PRO n 1 80 ALA n 1 81 GLN n 1 82 ARG n 1 83 GLN n 1 84 ALA n 1 85 ARG n 1 86 LEU n 1 87 LEU n 1 88 ARG n 1 89 MET n 1 90 SER n 1 91 ALA n 1 92 TYR n 1 93 ALA n 1 94 ALA n 1 95 LYS n 1 96 ARG n 1 97 GLN n 1 98 ALA n 1 99 SER n 1 100 LYS n 1 101 LYS n 1 102 SER n 2 1 DT n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 DT n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DT n 2 12 DA n 2 13 DT n 2 14 DG n 2 15 DT n 2 16 DA n 2 17 DT n 2 18 DG n 2 19 DC n 2 20 DA n 2 21 DT n 2 22 DA n 2 23 DC n 2 24 DA n 2 25 DT n 2 26 DA n 2 27 DC n 2 28 DA n 2 29 DT n 2 30 DA n 2 31 DC n 2 32 DA n 2 33 DT n 2 34 DA n 2 35 DC n 2 36 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 102 _entity_src_gen.gene_src_common_name 'Silk moth' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'fmbp-1, Fmbp-1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bombyx mori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7091 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 36 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 92 ? ? ? A . n A 1 2 HIS 2 93 ? ? ? A . n A 1 3 HIS 3 94 ? ? ? A . n A 1 4 HIS 4 95 ? ? ? A . n A 1 5 HIS 5 96 ? ? ? A . n A 1 6 HIS 6 97 ? ? ? A . n A 1 7 HIS 7 98 ? ? ? A . n A 1 8 GLU 8 99 99 GLU GLU A . n A 1 9 THR 9 100 100 THR THR A . n A 1 10 SER 10 101 101 SER SER A . n A 1 11 GLU 11 102 102 GLU GLU A . n A 1 12 GLU 12 103 103 GLU GLU A . n A 1 13 ARG 13 104 104 ARG ARG A . n A 1 14 ALA 14 105 105 ALA ALA A . n A 1 15 ALA 15 106 106 ALA ALA A . n A 1 16 ARG 16 107 107 ARG ARG A . n A 1 17 LEU 17 108 108 LEU LEU A . n A 1 18 ALA 18 109 109 ALA ALA A . n A 1 19 LYS 19 110 110 LYS LYS A . n A 1 20 MET 20 111 111 MET MET A . n A 1 21 SER 21 112 112 SER SER A . n A 1 22 ALA 22 113 113 ALA ALA A . n A 1 23 TYR 23 114 114 TYR TYR A . n A 1 24 ALA 24 115 115 ALA ALA A . n A 1 25 ALA 25 116 116 ALA ALA A . n A 1 26 GLN 26 117 117 GLN GLN A . n A 1 27 ARG 27 118 118 ARG ARG A . n A 1 28 LEU 28 119 119 LEU LEU A . n A 1 29 ALA 29 120 120 ALA ALA A . n A 1 30 ASN 30 121 121 ASN ASN A . n A 1 31 GLU 31 122 122 GLU GLU A . n A 1 32 SER 32 123 123 SER SER A . n A 1 33 PRO 33 124 124 PRO PRO A . n A 1 34 GLU 34 125 125 GLU GLU A . n A 1 35 GLN 35 126 126 GLN GLN A . n A 1 36 ARG 36 127 127 ARG ARG A . n A 1 37 ALA 37 128 128 ALA ALA A . n A 1 38 THR 38 129 129 THR THR A . n A 1 39 ARG 39 130 130 ARG ARG A . n A 1 40 LEU 40 131 131 LEU LEU A . n A 1 41 LYS 41 132 132 LYS LYS A . n A 1 42 ARG 42 133 133 ARG ARG A . n A 1 43 MET 43 134 134 MET MET A . n A 1 44 SER 44 135 135 SER SER A . n A 1 45 GLU 45 136 136 GLU GLU A . n A 1 46 TYR 46 137 137 TYR TYR A . n A 1 47 ALA 47 138 138 ALA ALA A . n A 1 48 ALA 48 139 139 ALA ALA A . n A 1 49 LYS 49 140 140 LYS LYS A . n A 1 50 ARG 50 141 141 ARG ARG A . n A 1 51 LEU 51 142 142 LEU LEU A . n A 1 52 SER 52 143 143 SER SER A . n A 1 53 SER 53 144 144 SER SER A . n A 1 54 GLU 54 145 145 GLU GLU A . n A 1 55 THR 55 146 146 THR THR A . n A 1 56 ARG 56 147 147 ARG ARG A . n A 1 57 GLU 57 148 148 GLU GLU A . n A 1 58 GLN 58 149 149 GLN GLN A . n A 1 59 ARG 59 150 150 ARG ARG A . n A 1 60 ALA 60 151 151 ALA ALA A . n A 1 61 ILE 61 152 152 ILE ILE A . n A 1 62 ARG 62 153 153 ARG ARG A . n A 1 63 LEU 63 154 154 LEU LEU A . n A 1 64 ALA 64 155 155 ALA ALA A . n A 1 65 ARG 65 156 156 ARG ARG A . n A 1 66 MET 66 157 157 MET MET A . n A 1 67 SER 67 158 158 SER SER A . n A 1 68 ALA 68 159 159 ALA ALA A . n A 1 69 TYR 69 160 160 TYR TYR A . n A 1 70 ALA 70 161 161 ALA ALA A . n A 1 71 ALA 71 162 162 ALA ALA A . n A 1 72 ARG 72 163 163 ARG ARG A . n A 1 73 ARG 73 164 164 ARG ARG A . n A 1 74 LEU 74 165 165 LEU LEU A . n A 1 75 ALA 75 166 166 ALA ALA A . n A 1 76 ASN 76 167 167 ASN ASN A . n A 1 77 GLU 77 168 168 GLU GLU A . n A 1 78 THR 78 169 169 THR THR A . n A 1 79 PRO 79 170 170 PRO PRO A . n A 1 80 ALA 80 171 171 ALA ALA A . n A 1 81 GLN 81 172 172 GLN GLN A . n A 1 82 ARG 82 173 173 ARG ARG A . n A 1 83 GLN 83 174 174 GLN GLN A . n A 1 84 ALA 84 175 175 ALA ALA A . n A 1 85 ARG 85 176 176 ARG ARG A . n A 1 86 LEU 86 177 177 LEU LEU A . n A 1 87 LEU 87 178 178 LEU LEU A . n A 1 88 ARG 88 179 179 ARG ARG A . n A 1 89 MET 89 180 180 MET MET A . n A 1 90 SER 90 181 181 SER SER A . n A 1 91 ALA 91 182 182 ALA ALA A . n A 1 92 TYR 92 183 183 TYR TYR A . n A 1 93 ALA 93 184 184 ALA ALA A . n A 1 94 ALA 94 185 185 ALA ALA A . n A 1 95 LYS 95 186 186 LYS LYS A . n A 1 96 ARG 96 187 187 ARG ARG A . n A 1 97 GLN 97 188 188 GLN GLN A . n A 1 98 ALA 98 189 189 ALA ALA A . n A 1 99 SER 99 190 ? ? ? A . n A 1 100 LYS 100 191 ? ? ? A . n A 1 101 LYS 101 192 ? ? ? A . n A 1 102 SER 102 193 ? ? ? A . n B 2 1 DT 1 -22 -22 DT DT B . n B 2 2 DG 2 -21 -21 DG DG B . n B 2 3 DT 3 -20 -20 DT DT B . n B 2 4 DA 4 -19 -19 DA DA B . n B 2 5 DT 5 -18 -18 DT DT B . n B 2 6 DG 6 -17 -17 DG DG B . n B 2 7 DT 7 -16 -16 DT DT B . n B 2 8 DA 8 -15 -15 DA DA B . n B 2 9 DT 9 -14 -14 DT DT B . n B 2 10 DG 10 -13 -13 DG DG B . n B 2 11 DT 11 -12 -12 DT DT B . n B 2 12 DA 12 -11 -11 DA DA B . n B 2 13 DT 13 -10 -10 DT DT B . n B 2 14 DG 14 -9 -9 DG DG B . n B 2 15 DT 15 -8 -8 DT DT B . n B 2 16 DA 16 -7 -7 DA DA B . n B 2 17 DT 17 -6 -6 DT DT B . n B 2 18 DG 18 -5 -5 DG DG B . n B 2 19 DC 19 5 5 DC DC B . n B 2 20 DA 20 6 6 DA DA B . n B 2 21 DT 21 7 7 DT DT B . n B 2 22 DA 22 8 8 DA DA B . n B 2 23 DC 23 9 9 DC DC B . n B 2 24 DA 24 10 10 DA DA B . n B 2 25 DT 25 11 11 DT DT B . n B 2 26 DA 26 12 12 DA DA B . n B 2 27 DC 27 13 13 DC DC B . n B 2 28 DA 28 14 14 DA DA B . n B 2 29 DT 29 15 15 DT DT B . n B 2 30 DA 30 16 16 DA DA B . n B 2 31 DC 31 17 17 DC DC B . n B 2 32 DA 32 18 18 DA DA B . n B 2 33 DT 33 19 19 DT DT B . n B 2 34 DA 34 20 20 DA DA B . n B 2 35 DC 35 21 21 DC DC B . n B 2 36 DA 36 22 22 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 70 HOH HOH A . C 3 HOH 2 202 57 HOH HOH A . C 3 HOH 3 203 66 HOH HOH A . C 3 HOH 4 204 44 HOH HOH A . C 3 HOH 5 205 30 HOH HOH A . C 3 HOH 6 206 29 HOH HOH A . C 3 HOH 7 207 16 HOH HOH A . C 3 HOH 8 208 42 HOH HOH A . C 3 HOH 9 209 27 HOH HOH A . C 3 HOH 10 210 18 HOH HOH A . C 3 HOH 11 211 64 HOH HOH A . C 3 HOH 12 212 31 HOH HOH A . C 3 HOH 13 213 11 HOH HOH A . C 3 HOH 14 214 50 HOH HOH A . C 3 HOH 15 215 68 HOH HOH A . C 3 HOH 16 216 71 HOH HOH A . C 3 HOH 17 217 28 HOH HOH A . C 3 HOH 18 218 35 HOH HOH A . C 3 HOH 19 219 37 HOH HOH A . C 3 HOH 20 220 24 HOH HOH A . C 3 HOH 21 221 8 HOH HOH A . C 3 HOH 22 222 43 HOH HOH A . C 3 HOH 23 223 15 HOH HOH A . D 3 HOH 1 101 9 HOH HOH B . D 3 HOH 2 102 63 HOH HOH B . D 3 HOH 3 103 65 HOH HOH B . D 3 HOH 4 104 1 HOH HOH B . D 3 HOH 5 105 39 HOH HOH B . D 3 HOH 6 106 46 HOH HOH B . D 3 HOH 7 107 12 HOH HOH B . D 3 HOH 8 108 23 HOH HOH B . D 3 HOH 9 109 21 HOH HOH B . D 3 HOH 10 110 14 HOH HOH B . D 3 HOH 11 111 47 HOH HOH B . D 3 HOH 12 112 4 HOH HOH B . D 3 HOH 13 113 36 HOH HOH B . D 3 HOH 14 114 40 HOH HOH B . D 3 HOH 15 115 2 HOH HOH B . D 3 HOH 16 116 56 HOH HOH B . D 3 HOH 17 117 25 HOH HOH B . D 3 HOH 18 118 26 HOH HOH B . D 3 HOH 19 119 34 HOH HOH B . D 3 HOH 20 120 33 HOH HOH B . D 3 HOH 21 121 58 HOH HOH B . D 3 HOH 22 122 72 HOH HOH B . D 3 HOH 23 123 20 HOH HOH B . D 3 HOH 24 124 60 HOH HOH B . D 3 HOH 25 125 69 HOH HOH B . D 3 HOH 26 126 22 HOH HOH B . D 3 HOH 27 127 32 HOH HOH B . D 3 HOH 28 128 67 HOH HOH B . D 3 HOH 29 129 10 HOH HOH B . D 3 HOH 30 130 7 HOH HOH B . D 3 HOH 31 131 49 HOH HOH B . D 3 HOH 32 132 51 HOH HOH B . D 3 HOH 33 133 52 HOH HOH B . D 3 HOH 34 134 5 HOH HOH B . D 3 HOH 35 135 13 HOH HOH B . D 3 HOH 36 136 62 HOH HOH B . D 3 HOH 37 137 38 HOH HOH B . D 3 HOH 38 138 6 HOH HOH B . D 3 HOH 39 139 53 HOH HOH B . D 3 HOH 40 140 55 HOH HOH B . D 3 HOH 41 141 17 HOH HOH B . D 3 HOH 42 142 19 HOH HOH B . D 3 HOH 43 143 41 HOH HOH B . D 3 HOH 44 144 3 HOH HOH B . D 3 HOH 45 145 45 HOH HOH B . D 3 HOH 46 146 48 HOH HOH B . D 3 HOH 47 147 59 HOH HOH B . D 3 HOH 48 148 61 HOH HOH B . D 3 HOH 49 149 54 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DC 5 ? P ? B DC 19 P 2 1 Y 1 B DC 5 ? OP1 ? B DC 19 OP1 3 1 Y 1 B DC 5 ? OP2 ? B DC 19 OP2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5D2S _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.011 _cell.length_a_esd ? _cell.length_b 44.011 _cell.length_b_esd ? _cell.length_c 237.869 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5D2S _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '18% PEG 2000, 0.1 M sodium citrate pH5.6' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-11-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5D2S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22628 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] 0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.30 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.61 _refine.B_iso_max ? _refine.B_iso_mean 41.527 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.718 _refine.correlation_coeff_Fo_to_Fc_free 0.389 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5D2S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.20 _refine.ls_d_res_low 43.28 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11993 _refine.ls_number_reflns_R_free 643 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.74 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22808 _refine.ls_R_factor_R_free 0.25324 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.22672 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.260 _refine.pdbx_overall_ESU_R_Free 0.203 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 6.074 _refine.overall_SU_ML 0.148 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 726 _refine_hist.pdbx_number_atoms_nucleic_acid 732 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 1530 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 43.28 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.015 1551 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1146 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.848 1.524 2236 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.301 3.000 2644 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.661 5.000 90 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 27.241 20.000 38 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.526 15.000 145 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.180 15.000 17 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.087 0.200 212 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 1257 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 352 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 3.359 3.947 363 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.357 3.942 362 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.228 5.901 452 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 4.225 5.908 453 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.196 4.209 1188 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.195 4.209 1189 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.724 6.239 1785 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.007 38.506 7039 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 7.006 38.505 7015 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_R_work 836 _refine_ls_shell.percent_reflns_obs 99.20 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.321 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.282 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5D2S _struct.title 'Crystal structure of STPR from Bombyx mori in complex with 18-bp DNA containing four repetitive units of ATAC' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5D2S _struct_keywords.text 'Protein-DNA complex, All a-helix, DNA major groove binding, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q5FBS0_BOMMO Q5FBS0 ? 1 ;ETSEERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLL RMSAYAAKRQASKKS ; 99 2 PDB 5D2S 5D2S ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5D2S A 8 ? 102 ? Q5FBS0 99 ? 193 ? 99 193 2 2 5D2S B 1 ? 36 ? 5D2S -22 ? 22 ? -22 22 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5D2S MET A 1 ? UNP Q5FBS0 ? ? 'expression tag' 92 1 1 5D2S HIS A 2 ? UNP Q5FBS0 ? ? 'expression tag' 93 2 1 5D2S HIS A 3 ? UNP Q5FBS0 ? ? 'expression tag' 94 3 1 5D2S HIS A 4 ? UNP Q5FBS0 ? ? 'expression tag' 95 4 1 5D2S HIS A 5 ? UNP Q5FBS0 ? ? 'expression tag' 96 5 1 5D2S HIS A 6 ? UNP Q5FBS0 ? ? 'expression tag' 97 6 1 5D2S HIS A 7 ? UNP Q5FBS0 ? ? 'expression tag' 98 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3390 ? 1 MORE -29 ? 1 'SSA (A^2)' 11950 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 9 ? ASN A 30 ? THR A 100 ASN A 121 1 ? 22 HELX_P HELX_P2 AA2 SER A 32 ? SER A 53 ? SER A 123 SER A 144 1 ? 22 HELX_P HELX_P3 AA3 THR A 55 ? ASN A 76 ? THR A 146 ASN A 167 1 ? 22 HELX_P HELX_P4 AA4 THR A 78 ? ALA A 98 ? THR A 169 ALA A 189 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DT 1 N3 ? ? ? 1_555 B DA 36 N1 ? ? B DT -22 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 1 O4 ? ? ? 1_555 B DA 36 N6 ? ? B DT -22 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 2 N1 ? ? ? 1_555 B DC 35 N3 ? ? B DG -21 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N2 ? ? ? 1_555 B DC 35 O2 ? ? B DG -21 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 O6 ? ? ? 1_555 B DC 35 N4 ? ? B DG -21 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 34 N1 ? ? B DT -20 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 34 N6 ? ? B DT -20 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N1 ? ? ? 1_555 B DT 33 N3 ? ? B DA -19 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N6 ? ? ? 1_555 B DT 33 O4 ? ? B DA -19 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 N3 ? ? ? 1_555 B DA 32 N1 ? ? B DT -18 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 O4 ? ? ? 1_555 B DA 32 N6 ? ? B DT -18 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 N1 ? ? ? 1_555 B DC 31 N3 ? ? B DG -17 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N2 ? ? ? 1_555 B DC 31 O2 ? ? B DG -17 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 O6 ? ? ? 1_555 B DC 31 N4 ? ? B DG -17 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 7 N3 ? ? ? 1_555 B DA 30 N1 ? ? B DT -16 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 7 O4 ? ? ? 1_555 B DA 30 N6 ? ? B DT -16 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 B DT 29 N3 ? ? B DA -15 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 B DT 29 O4 ? ? B DA -15 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 B DA 28 N1 ? ? B DT -14 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 B DA 28 N6 ? ? B DT -14 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DC 27 N3 ? ? B DG -13 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DC 27 O2 ? ? B DG -13 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 O6 ? ? ? 1_555 B DC 27 N4 ? ? B DG -13 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 11 N3 ? ? ? 1_555 B DA 26 N1 ? ? B DT -12 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 11 O4 ? ? ? 1_555 B DA 26 N6 ? ? B DT -12 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 12 N1 ? ? ? 1_555 B DT 25 N3 ? ? B DA -11 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 12 N6 ? ? ? 1_555 B DT 25 O4 ? ? B DA -11 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 13 N3 ? ? ? 1_555 B DA 24 N1 ? ? B DT -10 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 13 O4 ? ? ? 1_555 B DA 24 N6 ? ? B DT -10 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 14 N1 ? ? ? 1_555 B DC 23 N3 ? ? B DG -9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 14 N2 ? ? ? 1_555 B DC 23 O2 ? ? B DG -9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 14 O6 ? ? ? 1_555 B DC 23 N4 ? ? B DG -9 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DT 15 N3 ? ? ? 1_555 B DA 22 N1 ? ? B DT -8 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DT 15 O4 ? ? ? 1_555 B DA 22 N6 ? ? B DT -8 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 16 N1 ? ? ? 1_555 B DT 21 N3 ? ? B DA -7 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DA 16 N6 ? ? ? 1_555 B DT 21 O4 ? ? B DA -7 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DT 17 N3 ? ? ? 1_555 B DA 20 N1 ? ? B DT -6 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DT 17 O4 ? ? ? 1_555 B DA 20 N6 ? ? B DT -6 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 164 ? ? CZ A ARG 164 ? ? NH1 A ARG 164 ? ? 116.64 120.30 -3.66 0.50 N 2 1 "O5'" B DA 10 ? ? P B DA 10 ? ? OP2 B DA 10 ? ? 98.90 105.70 -6.80 0.90 N 3 1 "C1'" B DC 13 ? ? "O4'" B DC 13 ? ? "C4'" B DC 13 ? ? 103.31 110.10 -6.79 1.00 N 4 1 "C1'" B DC 17 ? ? "O4'" B DC 17 ? ? "C4'" B DC 17 ? ? 102.79 110.10 -7.31 1.00 N 5 1 "O5'" B DA 22 ? ? P B DA 22 ? ? OP1 B DA 22 ? ? 98.63 105.70 -7.07 0.90 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 92 ? A MET 1 2 1 Y 1 A HIS 93 ? A HIS 2 3 1 Y 1 A HIS 94 ? A HIS 3 4 1 Y 1 A HIS 95 ? A HIS 4 5 1 Y 1 A HIS 96 ? A HIS 5 6 1 Y 1 A HIS 97 ? A HIS 6 7 1 Y 1 A HIS 98 ? A HIS 7 8 1 Y 1 A SER 190 ? A SER 99 9 1 Y 1 A LYS 191 ? A LYS 100 10 1 Y 1 A LYS 192 ? A LYS 101 11 1 Y 1 A SER 193 ? A SER 102 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 DA OP3 O N N 58 DA P P N N 59 DA OP1 O N N 60 DA OP2 O N N 61 DA "O5'" O N N 62 DA "C5'" C N N 63 DA "C4'" C N R 64 DA "O4'" O N N 65 DA "C3'" C N S 66 DA "O3'" O N N 67 DA "C2'" C N N 68 DA "C1'" C N R 69 DA N9 N Y N 70 DA C8 C Y N 71 DA N7 N Y N 72 DA C5 C Y N 73 DA C6 C Y N 74 DA N6 N N N 75 DA N1 N Y N 76 DA C2 C Y N 77 DA N3 N Y N 78 DA C4 C Y N 79 DA HOP3 H N N 80 DA HOP2 H N N 81 DA "H5'" H N N 82 DA "H5''" H N N 83 DA "H4'" H N N 84 DA "H3'" H N N 85 DA "HO3'" H N N 86 DA "H2'" H N N 87 DA "H2''" H N N 88 DA "H1'" H N N 89 DA H8 H N N 90 DA H61 H N N 91 DA H62 H N N 92 DA H2 H N N 93 DC OP3 O N N 94 DC P P N N 95 DC OP1 O N N 96 DC OP2 O N N 97 DC "O5'" O N N 98 DC "C5'" C N N 99 DC "C4'" C N R 100 DC "O4'" O N N 101 DC "C3'" C N S 102 DC "O3'" O N N 103 DC "C2'" C N N 104 DC "C1'" C N R 105 DC N1 N N N 106 DC C2 C N N 107 DC O2 O N N 108 DC N3 N N N 109 DC C4 C N N 110 DC N4 N N N 111 DC C5 C N N 112 DC C6 C N N 113 DC HOP3 H N N 114 DC HOP2 H N N 115 DC "H5'" H N N 116 DC "H5''" H N N 117 DC "H4'" H N N 118 DC "H3'" H N N 119 DC "HO3'" H N N 120 DC "H2'" H N N 121 DC "H2''" H N N 122 DC "H1'" H N N 123 DC H41 H N N 124 DC H42 H N N 125 DC H5 H N N 126 DC H6 H N N 127 DG OP3 O N N 128 DG P P N N 129 DG OP1 O N N 130 DG OP2 O N N 131 DG "O5'" O N N 132 DG "C5'" C N N 133 DG "C4'" C N R 134 DG "O4'" O N N 135 DG "C3'" C N S 136 DG "O3'" O N N 137 DG "C2'" C N N 138 DG "C1'" C N R 139 DG N9 N Y N 140 DG C8 C Y N 141 DG N7 N Y N 142 DG C5 C Y N 143 DG C6 C N N 144 DG O6 O N N 145 DG N1 N N N 146 DG C2 C N N 147 DG N2 N N N 148 DG N3 N N N 149 DG C4 C Y N 150 DG HOP3 H N N 151 DG HOP2 H N N 152 DG "H5'" H N N 153 DG "H5''" H N N 154 DG "H4'" H N N 155 DG "H3'" H N N 156 DG "HO3'" H N N 157 DG "H2'" H N N 158 DG "H2''" H N N 159 DG "H1'" H N N 160 DG H8 H N N 161 DG H1 H N N 162 DG H21 H N N 163 DG H22 H N N 164 DT OP3 O N N 165 DT P P N N 166 DT OP1 O N N 167 DT OP2 O N N 168 DT "O5'" O N N 169 DT "C5'" C N N 170 DT "C4'" C N R 171 DT "O4'" O N N 172 DT "C3'" C N S 173 DT "O3'" O N N 174 DT "C2'" C N N 175 DT "C1'" C N R 176 DT N1 N N N 177 DT C2 C N N 178 DT O2 O N N 179 DT N3 N N N 180 DT C4 C N N 181 DT O4 O N N 182 DT C5 C N N 183 DT C7 C N N 184 DT C6 C N N 185 DT HOP3 H N N 186 DT HOP2 H N N 187 DT "H5'" H N N 188 DT "H5''" H N N 189 DT "H4'" H N N 190 DT "H3'" H N N 191 DT "HO3'" H N N 192 DT "H2'" H N N 193 DT "H2''" H N N 194 DT "H1'" H N N 195 DT H3 H N N 196 DT H71 H N N 197 DT H72 H N N 198 DT H73 H N N 199 DT H6 H N N 200 GLN N N N N 201 GLN CA C N S 202 GLN C C N N 203 GLN O O N N 204 GLN CB C N N 205 GLN CG C N N 206 GLN CD C N N 207 GLN OE1 O N N 208 GLN NE2 N N N 209 GLN OXT O N N 210 GLN H H N N 211 GLN H2 H N N 212 GLN HA H N N 213 GLN HB2 H N N 214 GLN HB3 H N N 215 GLN HG2 H N N 216 GLN HG3 H N N 217 GLN HE21 H N N 218 GLN HE22 H N N 219 GLN HXT H N N 220 GLU N N N N 221 GLU CA C N S 222 GLU C C N N 223 GLU O O N N 224 GLU CB C N N 225 GLU CG C N N 226 GLU CD C N N 227 GLU OE1 O N N 228 GLU OE2 O N N 229 GLU OXT O N N 230 GLU H H N N 231 GLU H2 H N N 232 GLU HA H N N 233 GLU HB2 H N N 234 GLU HB3 H N N 235 GLU HG2 H N N 236 GLU HG3 H N N 237 GLU HE2 H N N 238 GLU HXT H N N 239 HIS N N N N 240 HIS CA C N S 241 HIS C C N N 242 HIS O O N N 243 HIS CB C N N 244 HIS CG C Y N 245 HIS ND1 N Y N 246 HIS CD2 C Y N 247 HIS CE1 C Y N 248 HIS NE2 N Y N 249 HIS OXT O N N 250 HIS H H N N 251 HIS H2 H N N 252 HIS HA H N N 253 HIS HB2 H N N 254 HIS HB3 H N N 255 HIS HD1 H N N 256 HIS HD2 H N N 257 HIS HE1 H N N 258 HIS HE2 H N N 259 HIS HXT H N N 260 HOH O O N N 261 HOH H1 H N N 262 HOH H2 H N N 263 ILE N N N N 264 ILE CA C N S 265 ILE C C N N 266 ILE O O N N 267 ILE CB C N S 268 ILE CG1 C N N 269 ILE CG2 C N N 270 ILE CD1 C N N 271 ILE OXT O N N 272 ILE H H N N 273 ILE H2 H N N 274 ILE HA H N N 275 ILE HB H N N 276 ILE HG12 H N N 277 ILE HG13 H N N 278 ILE HG21 H N N 279 ILE HG22 H N N 280 ILE HG23 H N N 281 ILE HD11 H N N 282 ILE HD12 H N N 283 ILE HD13 H N N 284 ILE HXT H N N 285 LEU N N N N 286 LEU CA C N S 287 LEU C C N N 288 LEU O O N N 289 LEU CB C N N 290 LEU CG C N N 291 LEU CD1 C N N 292 LEU CD2 C N N 293 LEU OXT O N N 294 LEU H H N N 295 LEU H2 H N N 296 LEU HA H N N 297 LEU HB2 H N N 298 LEU HB3 H N N 299 LEU HG H N N 300 LEU HD11 H N N 301 LEU HD12 H N N 302 LEU HD13 H N N 303 LEU HD21 H N N 304 LEU HD22 H N N 305 LEU HD23 H N N 306 LEU HXT H N N 307 LYS N N N N 308 LYS CA C N S 309 LYS C C N N 310 LYS O O N N 311 LYS CB C N N 312 LYS CG C N N 313 LYS CD C N N 314 LYS CE C N N 315 LYS NZ N N N 316 LYS OXT O N N 317 LYS H H N N 318 LYS H2 H N N 319 LYS HA H N N 320 LYS HB2 H N N 321 LYS HB3 H N N 322 LYS HG2 H N N 323 LYS HG3 H N N 324 LYS HD2 H N N 325 LYS HD3 H N N 326 LYS HE2 H N N 327 LYS HE3 H N N 328 LYS HZ1 H N N 329 LYS HZ2 H N N 330 LYS HZ3 H N N 331 LYS HXT H N N 332 MET N N N N 333 MET CA C N S 334 MET C C N N 335 MET O O N N 336 MET CB C N N 337 MET CG C N N 338 MET SD S N N 339 MET CE C N N 340 MET OXT O N N 341 MET H H N N 342 MET H2 H N N 343 MET HA H N N 344 MET HB2 H N N 345 MET HB3 H N N 346 MET HG2 H N N 347 MET HG3 H N N 348 MET HE1 H N N 349 MET HE2 H N N 350 MET HE3 H N N 351 MET HXT H N N 352 PRO N N N N 353 PRO CA C N S 354 PRO C C N N 355 PRO O O N N 356 PRO CB C N N 357 PRO CG C N N 358 PRO CD C N N 359 PRO OXT O N N 360 PRO H H N N 361 PRO HA H N N 362 PRO HB2 H N N 363 PRO HB3 H N N 364 PRO HG2 H N N 365 PRO HG3 H N N 366 PRO HD2 H N N 367 PRO HD3 H N N 368 PRO HXT H N N 369 SER N N N N 370 SER CA C N S 371 SER C C N N 372 SER O O N N 373 SER CB C N N 374 SER OG O N N 375 SER OXT O N N 376 SER H H N N 377 SER H2 H N N 378 SER HA H N N 379 SER HB2 H N N 380 SER HB3 H N N 381 SER HG H N N 382 SER HXT H N N 383 THR N N N N 384 THR CA C N S 385 THR C C N N 386 THR O O N N 387 THR CB C N R 388 THR OG1 O N N 389 THR CG2 C N N 390 THR OXT O N N 391 THR H H N N 392 THR H2 H N N 393 THR HA H N N 394 THR HB H N N 395 THR HG1 H N N 396 THR HG21 H N N 397 THR HG22 H N N 398 THR HG23 H N N 399 THR HXT H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 DA OP3 P sing N N 55 DA OP3 HOP3 sing N N 56 DA P OP1 doub N N 57 DA P OP2 sing N N 58 DA P "O5'" sing N N 59 DA OP2 HOP2 sing N N 60 DA "O5'" "C5'" sing N N 61 DA "C5'" "C4'" sing N N 62 DA "C5'" "H5'" sing N N 63 DA "C5'" "H5''" sing N N 64 DA "C4'" "O4'" sing N N 65 DA "C4'" "C3'" sing N N 66 DA "C4'" "H4'" sing N N 67 DA "O4'" "C1'" sing N N 68 DA "C3'" "O3'" sing N N 69 DA "C3'" "C2'" sing N N 70 DA "C3'" "H3'" sing N N 71 DA "O3'" "HO3'" sing N N 72 DA "C2'" "C1'" sing N N 73 DA "C2'" "H2'" sing N N 74 DA "C2'" "H2''" sing N N 75 DA "C1'" N9 sing N N 76 DA "C1'" "H1'" sing N N 77 DA N9 C8 sing Y N 78 DA N9 C4 sing Y N 79 DA C8 N7 doub Y N 80 DA C8 H8 sing N N 81 DA N7 C5 sing Y N 82 DA C5 C6 sing Y N 83 DA C5 C4 doub Y N 84 DA C6 N6 sing N N 85 DA C6 N1 doub Y N 86 DA N6 H61 sing N N 87 DA N6 H62 sing N N 88 DA N1 C2 sing Y N 89 DA C2 N3 doub Y N 90 DA C2 H2 sing N N 91 DA N3 C4 sing Y N 92 DC OP3 P sing N N 93 DC OP3 HOP3 sing N N 94 DC P OP1 doub N N 95 DC P OP2 sing N N 96 DC P "O5'" sing N N 97 DC OP2 HOP2 sing N N 98 DC "O5'" "C5'" sing N N 99 DC "C5'" "C4'" sing N N 100 DC "C5'" "H5'" sing N N 101 DC "C5'" "H5''" sing N N 102 DC "C4'" "O4'" sing N N 103 DC "C4'" "C3'" sing N N 104 DC "C4'" "H4'" sing N N 105 DC "O4'" "C1'" sing N N 106 DC "C3'" "O3'" sing N N 107 DC "C3'" "C2'" sing N N 108 DC "C3'" "H3'" sing N N 109 DC "O3'" "HO3'" sing N N 110 DC "C2'" "C1'" sing N N 111 DC "C2'" "H2'" sing N N 112 DC "C2'" "H2''" sing N N 113 DC "C1'" N1 sing N N 114 DC "C1'" "H1'" sing N N 115 DC N1 C2 sing N N 116 DC N1 C6 sing N N 117 DC C2 O2 doub N N 118 DC C2 N3 sing N N 119 DC N3 C4 doub N N 120 DC C4 N4 sing N N 121 DC C4 C5 sing N N 122 DC N4 H41 sing N N 123 DC N4 H42 sing N N 124 DC C5 C6 doub N N 125 DC C5 H5 sing N N 126 DC C6 H6 sing N N 127 DG OP3 P sing N N 128 DG OP3 HOP3 sing N N 129 DG P OP1 doub N N 130 DG P OP2 sing N N 131 DG P "O5'" sing N N 132 DG OP2 HOP2 sing N N 133 DG "O5'" "C5'" sing N N 134 DG "C5'" "C4'" sing N N 135 DG "C5'" "H5'" sing N N 136 DG "C5'" "H5''" sing N N 137 DG "C4'" "O4'" sing N N 138 DG "C4'" "C3'" sing N N 139 DG "C4'" "H4'" sing N N 140 DG "O4'" "C1'" sing N N 141 DG "C3'" "O3'" sing N N 142 DG "C3'" "C2'" sing N N 143 DG "C3'" "H3'" sing N N 144 DG "O3'" "HO3'" sing N N 145 DG "C2'" "C1'" sing N N 146 DG "C2'" "H2'" sing N N 147 DG "C2'" "H2''" sing N N 148 DG "C1'" N9 sing N N 149 DG "C1'" "H1'" sing N N 150 DG N9 C8 sing Y N 151 DG N9 C4 sing Y N 152 DG C8 N7 doub Y N 153 DG C8 H8 sing N N 154 DG N7 C5 sing Y N 155 DG C5 C6 sing N N 156 DG C5 C4 doub Y N 157 DG C6 O6 doub N N 158 DG C6 N1 sing N N 159 DG N1 C2 sing N N 160 DG N1 H1 sing N N 161 DG C2 N2 sing N N 162 DG C2 N3 doub N N 163 DG N2 H21 sing N N 164 DG N2 H22 sing N N 165 DG N3 C4 sing N N 166 DT OP3 P sing N N 167 DT OP3 HOP3 sing N N 168 DT P OP1 doub N N 169 DT P OP2 sing N N 170 DT P "O5'" sing N N 171 DT OP2 HOP2 sing N N 172 DT "O5'" "C5'" sing N N 173 DT "C5'" "C4'" sing N N 174 DT "C5'" "H5'" sing N N 175 DT "C5'" "H5''" sing N N 176 DT "C4'" "O4'" sing N N 177 DT "C4'" "C3'" sing N N 178 DT "C4'" "H4'" sing N N 179 DT "O4'" "C1'" sing N N 180 DT "C3'" "O3'" sing N N 181 DT "C3'" "C2'" sing N N 182 DT "C3'" "H3'" sing N N 183 DT "O3'" "HO3'" sing N N 184 DT "C2'" "C1'" sing N N 185 DT "C2'" "H2'" sing N N 186 DT "C2'" "H2''" sing N N 187 DT "C1'" N1 sing N N 188 DT "C1'" "H1'" sing N N 189 DT N1 C2 sing N N 190 DT N1 C6 sing N N 191 DT C2 O2 doub N N 192 DT C2 N3 sing N N 193 DT N3 C4 sing N N 194 DT N3 H3 sing N N 195 DT C4 O4 doub N N 196 DT C4 C5 sing N N 197 DT C5 C7 sing N N 198 DT C5 C6 doub N N 199 DT C7 H71 sing N N 200 DT C7 H72 sing N N 201 DT C7 H73 sing N N 202 DT C6 H6 sing N N 203 GLN N CA sing N N 204 GLN N H sing N N 205 GLN N H2 sing N N 206 GLN CA C sing N N 207 GLN CA CB sing N N 208 GLN CA HA sing N N 209 GLN C O doub N N 210 GLN C OXT sing N N 211 GLN CB CG sing N N 212 GLN CB HB2 sing N N 213 GLN CB HB3 sing N N 214 GLN CG CD sing N N 215 GLN CG HG2 sing N N 216 GLN CG HG3 sing N N 217 GLN CD OE1 doub N N 218 GLN CD NE2 sing N N 219 GLN NE2 HE21 sing N N 220 GLN NE2 HE22 sing N N 221 GLN OXT HXT sing N N 222 GLU N CA sing N N 223 GLU N H sing N N 224 GLU N H2 sing N N 225 GLU CA C sing N N 226 GLU CA CB sing N N 227 GLU CA HA sing N N 228 GLU C O doub N N 229 GLU C OXT sing N N 230 GLU CB CG sing N N 231 GLU CB HB2 sing N N 232 GLU CB HB3 sing N N 233 GLU CG CD sing N N 234 GLU CG HG2 sing N N 235 GLU CG HG3 sing N N 236 GLU CD OE1 doub N N 237 GLU CD OE2 sing N N 238 GLU OE2 HE2 sing N N 239 GLU OXT HXT sing N N 240 HIS N CA sing N N 241 HIS N H sing N N 242 HIS N H2 sing N N 243 HIS CA C sing N N 244 HIS CA CB sing N N 245 HIS CA HA sing N N 246 HIS C O doub N N 247 HIS C OXT sing N N 248 HIS CB CG sing N N 249 HIS CB HB2 sing N N 250 HIS CB HB3 sing N N 251 HIS CG ND1 sing Y N 252 HIS CG CD2 doub Y N 253 HIS ND1 CE1 doub Y N 254 HIS ND1 HD1 sing N N 255 HIS CD2 NE2 sing Y N 256 HIS CD2 HD2 sing N N 257 HIS CE1 NE2 sing Y N 258 HIS CE1 HE1 sing N N 259 HIS NE2 HE2 sing N N 260 HIS OXT HXT sing N N 261 HOH O H1 sing N N 262 HOH O H2 sing N N 263 ILE N CA sing N N 264 ILE N H sing N N 265 ILE N H2 sing N N 266 ILE CA C sing N N 267 ILE CA CB sing N N 268 ILE CA HA sing N N 269 ILE C O doub N N 270 ILE C OXT sing N N 271 ILE CB CG1 sing N N 272 ILE CB CG2 sing N N 273 ILE CB HB sing N N 274 ILE CG1 CD1 sing N N 275 ILE CG1 HG12 sing N N 276 ILE CG1 HG13 sing N N 277 ILE CG2 HG21 sing N N 278 ILE CG2 HG22 sing N N 279 ILE CG2 HG23 sing N N 280 ILE CD1 HD11 sing N N 281 ILE CD1 HD12 sing N N 282 ILE CD1 HD13 sing N N 283 ILE OXT HXT sing N N 284 LEU N CA sing N N 285 LEU N H sing N N 286 LEU N H2 sing N N 287 LEU CA C sing N N 288 LEU CA CB sing N N 289 LEU CA HA sing N N 290 LEU C O doub N N 291 LEU C OXT sing N N 292 LEU CB CG sing N N 293 LEU CB HB2 sing N N 294 LEU CB HB3 sing N N 295 LEU CG CD1 sing N N 296 LEU CG CD2 sing N N 297 LEU CG HG sing N N 298 LEU CD1 HD11 sing N N 299 LEU CD1 HD12 sing N N 300 LEU CD1 HD13 sing N N 301 LEU CD2 HD21 sing N N 302 LEU CD2 HD22 sing N N 303 LEU CD2 HD23 sing N N 304 LEU OXT HXT sing N N 305 LYS N CA sing N N 306 LYS N H sing N N 307 LYS N H2 sing N N 308 LYS CA C sing N N 309 LYS CA CB sing N N 310 LYS CA HA sing N N 311 LYS C O doub N N 312 LYS C OXT sing N N 313 LYS CB CG sing N N 314 LYS CB HB2 sing N N 315 LYS CB HB3 sing N N 316 LYS CG CD sing N N 317 LYS CG HG2 sing N N 318 LYS CG HG3 sing N N 319 LYS CD CE sing N N 320 LYS CD HD2 sing N N 321 LYS CD HD3 sing N N 322 LYS CE NZ sing N N 323 LYS CE HE2 sing N N 324 LYS CE HE3 sing N N 325 LYS NZ HZ1 sing N N 326 LYS NZ HZ2 sing N N 327 LYS NZ HZ3 sing N N 328 LYS OXT HXT sing N N 329 MET N CA sing N N 330 MET N H sing N N 331 MET N H2 sing N N 332 MET CA C sing N N 333 MET CA CB sing N N 334 MET CA HA sing N N 335 MET C O doub N N 336 MET C OXT sing N N 337 MET CB CG sing N N 338 MET CB HB2 sing N N 339 MET CB HB3 sing N N 340 MET CG SD sing N N 341 MET CG HG2 sing N N 342 MET CG HG3 sing N N 343 MET SD CE sing N N 344 MET CE HE1 sing N N 345 MET CE HE2 sing N N 346 MET CE HE3 sing N N 347 MET OXT HXT sing N N 348 PRO N CA sing N N 349 PRO N CD sing N N 350 PRO N H sing N N 351 PRO CA C sing N N 352 PRO CA CB sing N N 353 PRO CA HA sing N N 354 PRO C O doub N N 355 PRO C OXT sing N N 356 PRO CB CG sing N N 357 PRO CB HB2 sing N N 358 PRO CB HB3 sing N N 359 PRO CG CD sing N N 360 PRO CG HG2 sing N N 361 PRO CG HG3 sing N N 362 PRO CD HD2 sing N N 363 PRO CD HD3 sing N N 364 PRO OXT HXT sing N N 365 SER N CA sing N N 366 SER N H sing N N 367 SER N H2 sing N N 368 SER CA C sing N N 369 SER CA CB sing N N 370 SER CA HA sing N N 371 SER C O doub N N 372 SER C OXT sing N N 373 SER CB OG sing N N 374 SER CB HB2 sing N N 375 SER CB HB3 sing N N 376 SER OG HG sing N N 377 SER OXT HXT sing N N 378 THR N CA sing N N 379 THR N H sing N N 380 THR N H2 sing N N 381 THR CA C sing N N 382 THR CA CB sing N N 383 THR CA HA sing N N 384 THR C O doub N N 385 THR C OXT sing N N 386 THR CB OG1 sing N N 387 THR CB CG2 sing N N 388 THR CB HB sing N N 389 THR OG1 HG1 sing N N 390 THR CG2 HG21 sing N N 391 THR CG2 HG22 sing N N 392 THR CG2 HG23 sing N N 393 THR OXT HXT sing N N 394 TYR N CA sing N N 395 TYR N H sing N N 396 TYR N H2 sing N N 397 TYR CA C sing N N 398 TYR CA CB sing N N 399 TYR CA HA sing N N 400 TYR C O doub N N 401 TYR C OXT sing N N 402 TYR CB CG sing N N 403 TYR CB HB2 sing N N 404 TYR CB HB3 sing N N 405 TYR CG CD1 doub Y N 406 TYR CG CD2 sing Y N 407 TYR CD1 CE1 sing Y N 408 TYR CD1 HD1 sing N N 409 TYR CD2 CE2 doub Y N 410 TYR CD2 HD2 sing N N 411 TYR CE1 CZ doub Y N 412 TYR CE1 HE1 sing N N 413 TYR CE2 CZ sing Y N 414 TYR CE2 HE2 sing N N 415 TYR CZ OH sing N N 416 TYR OH HH sing N N 417 TYR OXT HXT sing N N 418 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5D2S 'double helix' 5D2S 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 B DA 36 1_555 0.081 -0.119 0.175 -3.570 -2.541 0.210 1 B_DT-22:DA22_B B -22 ? B 22 ? 20 1 1 B DG 2 1_555 B DC 35 1_555 0.081 -0.179 0.344 6.272 -4.510 -0.329 2 B_DG-21:DC21_B B -21 ? B 21 ? 19 1 1 B DT 3 1_555 B DA 34 1_555 -0.331 -0.031 -0.137 11.833 -3.272 2.403 3 B_DT-20:DA20_B B -20 ? B 20 ? 20 1 1 B DA 4 1_555 B DT 33 1_555 0.140 0.004 0.206 -2.074 -14.334 5.192 4 B_DA-19:DT19_B B -19 ? B 19 ? 20 1 1 B DT 5 1_555 B DA 32 1_555 -0.007 -0.092 0.041 -2.679 -12.663 5.240 5 B_DT-18:DA18_B B -18 ? B 18 ? 20 1 1 B DG 6 1_555 B DC 31 1_555 -0.187 -0.079 -0.152 -11.330 -6.381 1.316 6 B_DG-17:DC17_B B -17 ? B 17 ? 19 1 1 B DT 7 1_555 B DA 30 1_555 0.117 0.019 0.000 -3.717 -7.030 6.320 7 B_DT-16:DA16_B B -16 ? B 16 ? 20 1 1 B DA 8 1_555 B DT 29 1_555 0.141 -0.055 0.240 -1.773 -10.826 -1.997 8 B_DA-15:DT15_B B -15 ? B 15 ? 20 1 1 B DT 9 1_555 B DA 28 1_555 0.100 -0.137 0.087 -1.812 -9.156 1.314 9 B_DT-14:DA14_B B -14 ? B 14 ? 20 1 1 B DG 10 1_555 B DC 27 1_555 -0.352 -0.006 -0.321 -15.089 -3.248 0.423 10 B_DG-13:DC13_B B -13 ? B 13 ? 19 1 1 B DT 11 1_555 B DA 26 1_555 0.024 -0.075 0.064 -3.834 -4.099 3.898 11 B_DT-12:DA12_B B -12 ? B 12 ? 20 1 1 B DA 12 1_555 B DT 25 1_555 -0.030 -0.079 -0.004 0.482 -12.835 -0.155 12 B_DA-11:DT11_B B -11 ? B 11 ? 20 1 1 B DT 13 1_555 B DA 24 1_555 -0.069 -0.057 0.216 -1.016 -8.669 3.202 13 B_DT-10:DA10_B B -10 ? B 10 ? 20 1 1 B DG 14 1_555 B DC 23 1_555 -0.116 0.061 -0.106 -1.560 -10.898 -0.868 14 B_DG-9:DC9_B B -9 ? B 9 ? 19 1 1 B DT 15 1_555 B DA 22 1_555 0.160 0.058 -0.120 4.308 -4.920 2.678 15 B_DT-8:DA8_B B -8 ? B 8 ? 20 1 1 B DA 16 1_555 B DT 21 1_555 -0.086 -0.169 0.040 -0.195 -16.763 -0.856 16 B_DA-7:DT7_B B -7 ? B 7 ? 20 1 1 B DT 17 1_555 B DA 20 1_555 0.102 -0.036 0.020 -0.137 -9.044 3.265 17 B_DT-6:DA6_B B -6 ? B 6 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 B DA 36 1_555 B DG 2 1_555 B DC 35 1_555 0.625 0.117 3.040 -0.130 0.435 36.489 0.132 -1.014 3.039 0.694 0.208 36.491 1 BB_DT-22DG-21:DC21DA22_BB B -22 ? B 22 ? B -21 ? B 21 ? 1 B DG 2 1_555 B DC 35 1_555 B DT 3 1_555 B DA 34 1_555 -0.404 -0.580 3.201 2.388 -0.470 28.628 -1.067 1.337 3.167 -0.949 -4.819 28.729 2 BB_DG-21DT-20:DA20DC21_BB B -21 ? B 21 ? B -20 ? B 20 ? 1 B DT 3 1_555 B DA 34 1_555 B DA 4 1_555 B DT 33 1_555 -0.151 0.190 3.579 -3.556 -1.780 45.993 0.408 -0.140 3.571 -2.273 4.541 46.155 3 BB_DT-20DA-19:DT19DA20_BB B -20 ? B 20 ? B -19 ? B 19 ? 1 B DA 4 1_555 B DT 33 1_555 B DT 5 1_555 B DA 32 1_555 0.198 -0.451 3.271 0.738 -3.438 34.023 -0.220 -0.220 3.302 -5.855 -1.256 34.199 4 BB_DA-19DT-18:DA18DT19_BB B -19 ? B 19 ? B -18 ? B 18 ? 1 B DT 5 1_555 B DA 32 1_555 B DG 6 1_555 B DC 31 1_555 -0.143 -0.502 3.545 -0.562 2.862 37.034 -1.200 0.144 3.499 4.497 0.883 37.145 5 BB_DT-18DG-17:DC17DA18_BB B -18 ? B 18 ? B -17 ? B 17 ? 1 B DG 6 1_555 B DC 31 1_555 B DT 7 1_555 B DA 30 1_555 -0.119 -0.416 3.089 -1.181 3.567 28.351 -1.600 -0.011 3.017 7.242 2.398 28.594 6 BB_DG-17DT-16:DA16DC17_BB B -17 ? B 17 ? B -16 ? B 16 ? 1 B DT 7 1_555 B DA 30 1_555 B DA 8 1_555 B DT 29 1_555 -1.765 0.670 3.219 -7.529 -3.937 38.685 1.463 1.701 3.408 -5.857 11.201 39.572 7 BB_DT-16DA-15:DT15DA16_BB B -16 ? B 16 ? B -15 ? B 15 ? 1 B DA 8 1_555 B DT 29 1_555 B DT 9 1_555 B DA 28 1_555 0.650 -0.598 3.386 0.749 -5.818 33.957 -0.056 -0.974 3.451 -9.871 -1.271 34.445 8 BB_DA-15DT-14:DA14DT15_BB B -15 ? B 15 ? B -14 ? B 14 ? 1 B DT 9 1_555 B DA 28 1_555 B DG 10 1_555 B DC 27 1_555 0.483 -0.643 3.707 3.039 3.066 35.043 -1.573 -0.287 3.667 5.069 -5.024 35.300 9 BB_DT-14DG-13:DC13DA14_BB B -14 ? B 14 ? B -13 ? B 13 ? 1 B DG 10 1_555 B DC 27 1_555 B DT 11 1_555 B DA 26 1_555 -0.445 -0.598 3.110 -0.794 0.903 28.806 -1.393 0.725 3.101 1.814 1.596 28.831 10 BB_DG-13DT-12:DA12DC13_BB B -13 ? B 13 ? B -12 ? B 12 ? 1 B DT 11 1_555 B DA 26 1_555 B DA 12 1_555 B DT 25 1_555 -1.189 0.871 3.278 -4.098 -4.950 40.920 1.763 1.242 3.255 -7.028 5.818 41.401 11 BB_DT-12DA-11:DT11DA12_BB B -12 ? B 12 ? B -11 ? B 11 ? 1 B DA 12 1_555 B DT 25 1_555 B DT 13 1_555 B DA 24 1_555 0.609 -0.437 3.330 -1.548 -3.278 32.525 -0.199 -1.354 3.326 -5.830 2.754 32.721 12 BB_DA-11DT-10:DA10DT11_BB B -11 ? B 11 ? B -10 ? B 10 ? 1 B DT 13 1_555 B DA 24 1_555 B DG 14 1_555 B DC 23 1_555 0.068 -0.263 3.390 1.374 5.754 36.311 -1.225 0.085 3.312 9.158 -2.186 36.774 13 BB_DT-10DG-9:DC9DA10_BB B -10 ? B 10 ? B -9 ? B 9 ? 1 B DG 14 1_555 B DC 23 1_555 B DT 15 1_555 B DA 22 1_555 -0.081 -0.610 3.122 -0.562 1.746 29.212 -1.566 0.044 3.082 3.457 1.113 29.268 14 BB_DG-9DT-8:DA8DC9_BB B -9 ? B 9 ? B -8 ? B 8 ? 1 B DT 15 1_555 B DA 22 1_555 B DA 16 1_555 B DT 21 1_555 -1.710 0.891 3.375 -5.997 -1.353 35.608 1.642 1.851 3.571 -2.192 9.717 36.117 15 BB_DT-8DA-7:DT7DA8_BB B -8 ? B 8 ? B -7 ? B 7 ? 1 B DA 16 1_555 B DT 21 1_555 B DT 17 1_555 B DA 20 1_555 0.581 -0.352 3.341 0.410 -5.869 36.320 0.267 -0.863 3.361 -9.339 -0.653 36.778 16 BB_DA-7DT-6:DA6DT7_BB B -7 ? B 7 ? B -6 ? B 6 ? # _atom_sites.entry_id 5D2S _atom_sites.fract_transf_matrix[1][1] 0.022722 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022722 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004204 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_