data_5DO4 # _entry.id 5DO4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DO4 pdb_00005do4 10.2210/pdb5do4/pdb WWPDB D_1000213333 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DO4 _pdbx_database_status.recvd_initial_deposition_date 2015-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pallan, P.S.' 1 'Egli, M.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 8052 _citation.page_last 8064 _citation.title 'Evoking picomolar binding in RNA by a single phosphorodithioate linkage.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw725 _citation.pdbx_database_id_PubMed 27566147 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abeydeera, N.D.' 1 ? primary 'Egli, M.' 2 ? primary 'Cox, N.' 3 ? primary 'Mercier, K.' 4 ? primary 'Conde, J.N.' 5 ? primary 'Pallan, P.S.' 6 ? primary 'Mizurini, D.M.' 7 ? primary 'Sierant, M.' 8 ? primary 'Hibti, F.E.' 9 ? primary 'Hassell, T.' 10 ? primary 'Wang, T.' 11 ? primary 'Liu, F.W.' 12 ? primary 'Liu, H.M.' 13 ? primary 'Martinez, C.' 14 ? primary 'Sood, A.K.' 15 ? primary 'Lybrand, T.P.' 16 ? primary 'Frydman, C.' 17 ? primary 'Monteiro, R.Q.' 18 ? primary 'Gomer, R.H.' 19 ? primary 'Nawrot, B.' 20 ? primary 'Yang, X.' 21 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5DO4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.663 _cell.length_a_esd ? _cell.length_b 139.166 _cell.length_b_esd ? _cell.length_c 44.511 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thrombin light chain' 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat 'Thrombin heavy chain' 29651.105 1 3.4.21.5 ? ? ? 3 polymer syn 'RNA (25-MER)' 8246.917 1 ? ? ? ? 4 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 6 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 7 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 8 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 9 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 1 ? ? ? ? 10 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 11 water nat water 18.015 163 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Coagulation factor II' 2 'Coagulation factor II' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; H ? 3 polyribonucleotide no yes 'GGGAA(CFZ)AAAG(CFZ)(UMS)GAAG(UFT)(ADS)(CFZ)(UFT)(UMS)A(CFZ)(CFZ)(CFZ)' GGGAAXAAAGXUGAAGUXXUUAXXX A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 3 1 G n 3 2 G n 3 3 G n 3 4 A n 3 5 A n 3 6 CFZ n 3 7 A n 3 8 A n 3 9 A n 3 10 G n 3 11 CFZ n 3 12 UMS n 3 13 G n 3 14 A n 3 15 A n 3 16 G n 3 17 UFT n 3 18 ADS n 3 19 CFZ n 3 20 UFT n 3 21 UMS n 3 22 A n 3 23 CFZ n 3 24 CFZ n 3 25 CFZ n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 36 Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 258 Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 25 _pdbx_entity_src_syn.organism_scientific unidentified _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32644 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP THRB_HUMAN P00734 ? 1 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 2 UNP THRB_HUMAN P00734 ? 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; 364 3 PDB 5DO4 5DO4 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5DO4 L 1 ? 36 ? P00734 328 ? 363 ? 1 36 2 2 5DO4 H 1 ? 258 ? P00734 364 ? 621 ? 1 258 3 3 5DO4 A 1 ? 25 ? 5DO4 1 ? 25 ? 1 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADS non-polymer . "ADENOSINE-5'-(DITHIO)PHOSPHATE" ? 'C10 H14 N5 O5 P S2' 379.352 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CFZ 'DNA linking' n ;2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) ; ? 'C9 H13 F N3 O7 P' 325.188 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UFT 'DNA linking' n ;2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate) ; ? 'C9 H12 F N2 O8 P' 326.172 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DO4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '5% [w/v] PEG-6000, 2.5% v/v (+/-)-2-Methyl-2,4-pentanediol, 50 mM HEPES' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-07-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97857 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DO4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.859 _reflns.d_resolution_low 42.3 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 40685 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 3.5 _reflns.percent_possible_obs 96.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.6 _reflns.pdbx_Rmerge_I_obs 0.139 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.139 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.859 _reflns_shell.d_res_low 1.90 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.91 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 85.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.417 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -3.1400 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 5.9300 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -2.7900 _refine.B_iso_max 90.800 _refine.B_iso_mean 34.4460 _refine.B_iso_min 10.890 _refine.correlation_coeff_Fo_to_Fc 0.9570 _refine.correlation_coeff_Fo_to_Fc_free 0.9480 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DO4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8590 _refine.ls_d_res_low 42.300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 40248 _refine.ls_number_reflns_R_free 2515 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.8000 _refine.ls_percent_reflns_R_free 5.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1910 _refine.ls_R_factor_R_free 0.2236 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1890 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.500 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3DD2 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1210 _refine.pdbx_overall_ESU_R_Free 0.1190 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.4280 _refine.overall_SU_ML 0.1180 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8590 _refine_hist.d_res_low 42.300 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 3101 _refine_hist.pdbx_number_residues_total 313 _refine_hist.pdbx_B_iso_mean_ligand 49.84 _refine_hist.pdbx_B_iso_mean_solvent 35.91 _refine_hist.pdbx_number_atoms_protein 2321 _refine_hist.pdbx_number_atoms_nucleic_acid 535 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.018 0.018 3058 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 2618 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.431 1.960 4240 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.798 3.000 6039 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.700 5.000 285 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 34.898 23.274 113 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 15.055 15.000 430 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 14.114 15.000 21 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.149 0.200 445 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 0.021 2989 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 700 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 2.622 2.943 1152 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.621 2.943 1153 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.831 4.386 1433 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8590 _refine_ls_shell.d_res_low 1.9070 _refine_ls_shell.number_reflns_all 2556 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 154 _refine_ls_shell.number_reflns_R_work 2402 _refine_ls_shell.percent_reflns_obs 79.3800 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2930 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.3140 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5DO4 _struct.title 'Thrombin-RNA aptamer complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DO4 _struct_keywords.text 'Thrombin-RNA aptamer, phosphorodithioate RNA, PS2-RNA, PS2 linkage, Hydrolase-RNA complex' _struct_keywords.pdbx_keywords Hydrolase/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 7 ? K N N 7 ? L N N 8 ? M N N 9 ? N N N 10 ? O N N 11 ? P N N 11 ? Q N N 11 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 15 ? SER A 19 ? PHE L 15 SER L 19 5 ? 5 HELX_P HELX_P2 AA2 THR A 24 ? TYR A 32 ? THR L 24 TYR L 32 1 ? 9 HELX_P HELX_P3 AA3 ALA B 41 ? CYS B 44 ? ALA H 41 CYS H 44 5 ? 4 HELX_P HELX_P4 AA4 PRO B 48 ? ASP B 51 ? PRO H 48 ASP H 51 5 ? 4 HELX_P HELX_P5 AA5 THR B 55 ? ASN B 57 ? THR H 55 ASN H 57 5 ? 3 HELX_P HELX_P6 AA6 ASP B 122 ? LEU B 130 ? ASP H 122 LEU H 130 1 ? 9 HELX_P HELX_P7 AA7 VAL B 152 ? GLN B 156 ? VAL H 152 GLN H 156 5 ? 5 HELX_P HELX_P8 AA8 GLU B 169 ? SER B 176 ? GLU H 169 SER H 176 1 ? 8 HELX_P HELX_P9 AA9 LYS B 191 ? GLY B 195 ? LYS H 191 GLY H 195 5 ? 5 HELX_P HELX_P10 AB1 LEU B 246 ? GLY B 258 ? LEU H 246 GLY H 258 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 9 H CYS 119 1_555 ? ? ? ? ? ? ? 2.120 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 28 H CYS 44 1_555 ? ? ? ? ? ? ? 2.099 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 173 H CYS 187 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 201 H CYS 231 1_555 ? ? ? ? ? ? ? 2.120 ? ? covale1 covale one ? B HIS 43 NE2 ? ? ? 1_555 D 0G6 . C3 ? ? H HIS 43 H 0G6 301 1_555 ? ? ? ? ? ? ? 1.503 ? ? covale2 covale one ? B ASN 53 ND2 ? ? ? 1_555 E NAG . C1 ? ? H ASN 53 H NAG 302 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale3 covale none ? B SER 205 OG ? ? ? 1_555 D 0G6 . C2 ? ? H SER 205 H 0G6 301 1_555 ? ? ? ? ? ? ? 1.390 ? ? covale4 covale both ? C A 5 "O3'" ? ? ? 1_555 C CFZ 6 P ? ? A A 5 A CFZ 6 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale5 covale both ? C CFZ 6 "O3'" ? ? ? 1_555 C A 7 P ? ? A CFZ 6 A A 7 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale6 covale both ? C G 10 "O3'" ? ? ? 1_555 C CFZ 11 P ? ? A G 10 A CFZ 11 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale7 covale both ? C CFZ 11 "O3'" ? ? ? 1_555 C UMS 12 P ? ? A CFZ 11 A UMS 12 1_555 ? ? ? ? ? ? ? 1.565 ? ? covale8 covale both ? C UMS 12 "O3'" ? ? ? 1_555 C G 13 P ? ? A UMS 12 A G 13 1_555 ? ? ? ? ? ? ? 1.569 ? ? covale9 covale both ? C G 16 "O3'" ? ? ? 1_555 C UFT 17 P ? ? A G 16 A UFT 17 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale10 covale one ? C UFT 17 "O3'" ? ? ? 1_555 C ADS 18 P ? ? A UFT 17 A ADS 18 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale11 covale one ? C ADS 18 "O3'" ? ? ? 1_555 C CFZ 19 P ? ? A ADS 18 A CFZ 19 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale12 covale both ? C CFZ 19 "O3'" ? ? ? 1_555 C UFT 20 P ? ? A CFZ 19 A UFT 20 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale13 covale both ? C UFT 20 "O3'" ? ? ? 1_555 C UMS 21 P ? ? A UFT 20 A UMS 21 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale14 covale both ? C UMS 21 "O3'" ? ? ? 1_555 C A 22 P ? ? A UMS 21 A A 22 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale15 covale both ? C A 22 "O3'" ? ? ? 1_555 C CFZ 23 P ? ? A A 22 A CFZ 23 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale16 covale both ? C CFZ 23 "O3'" ? ? ? 1_555 C CFZ 24 P ? ? A CFZ 23 A CFZ 24 1_555 ? ? ? ? ? ? ? 1.567 ? ? covale17 covale both ? C CFZ 24 "O3'" ? ? ? 1_555 C CFZ 25 P ? ? A CFZ 24 A CFZ 25 1_555 ? ? ? ? ? ? ? 1.597 ? ? metalc1 metalc ? ? B ARG 233 O ? ? ? 1_555 L CA . CA ? ? H ARG 233 H CA 309 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc2 metalc ? ? B LYS 236 O ? ? ? 1_555 L CA . CA ? ? H LYS 236 H CA 309 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc3 metalc ? ? L CA . CA ? ? ? 1_555 P HOH . O ? ? H CA 309 H HOH 405 1_555 ? ? ? ? ? ? ? 2.422 ? ? metalc4 metalc ? ? L CA . CA ? ? ? 1_555 P HOH . O ? ? H CA 309 H HOH 442 1_555 ? ? ? ? ? ? ? 2.620 ? ? metalc5 metalc ? ? L CA . CA ? ? ? 1_555 P HOH . O ? ? H CA 309 H HOH 463 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc6 metalc ? ? L CA . CA ? ? ? 1_555 P HOH . O ? ? H CA 309 H HOH 504 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc7 metalc ? ? C A 8 OP2 ? ? ? 1_555 N MG . MG ? ? A A 8 A MG 102 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc8 metalc ? ? C A 9 OP2 ? ? ? 1_555 N MG . MG ? ? A A 9 A MG 102 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc9 metalc ? ? N MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 202 1_555 ? ? ? ? ? ? ? 2.533 ? ? metalc10 metalc ? ? N MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 210 1_555 ? ? ? ? ? ? ? 2.275 ? ? metalc11 metalc ? ? N MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 211 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc12 metalc ? ? N MG . MG ? ? ? 1_555 Q HOH . O ? ? A MG 102 A HOH 215 1_555 ? ? ? ? ? ? ? 2.159 ? ? hydrog1 hydrog ? ? C G 1 N1 ? ? ? 1_555 C CFZ 25 N3 ? ? A G 1 A CFZ 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C G 1 N2 ? ? ? 1_555 C CFZ 25 O2 ? ? A G 1 A CFZ 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 1 O6 ? ? ? 1_555 C CFZ 25 N4 ? ? A G 1 A CFZ 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 2 N1 ? ? ? 1_555 C CFZ 24 N3 ? ? A G 2 A CFZ 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C G 2 N2 ? ? ? 1_555 C CFZ 24 O2 ? ? A G 2 A CFZ 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C G 2 O6 ? ? ? 1_555 C CFZ 24 N4 ? ? A G 2 A CFZ 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 3 N1 ? ? ? 1_555 C CFZ 23 N3 ? ? A G 3 A CFZ 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C G 3 N2 ? ? ? 1_555 C CFZ 23 O2 ? ? A G 3 A CFZ 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C G 3 O6 ? ? ? 1_555 C CFZ 23 N4 ? ? A G 3 A CFZ 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C A 5 N3 ? ? ? 1_555 C A 22 N6 ? ? A A 5 A A 22 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog11 hydrog ? ? C A 7 N1 ? ? ? 1_555 C CFZ 19 N4 ? ? A A 7 A CFZ 19 1_555 ? ? ? ? ? ? 'A-CFZ MISPAIR' ? ? ? hydrog12 hydrog ? ? C A 8 N1 ? ? ? 1_555 C UMS 21 N3 ? ? A A 8 A UMS 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C A 8 N6 ? ? ? 1_555 C UMS 21 O4 ? ? A A 8 A UMS 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C A 9 N1 ? ? ? 1_555 C UFT 20 N3 ? ? A A 9 A UFT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C A 9 N6 ? ? ? 1_555 C UFT 20 O4 ? ? A A 9 A UFT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C G 10 N1 ? ? ? 1_555 C CFZ 19 N3 ? ? A G 10 A CFZ 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C G 10 N2 ? ? ? 1_555 C CFZ 19 O2 ? ? A G 10 A CFZ 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C G 10 O6 ? ? ? 1_555 C CFZ 19 N4 ? ? A G 10 A CFZ 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C CFZ 11 N3 ? ? ? 1_555 C G 16 N1 ? ? A CFZ 11 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C CFZ 11 N4 ? ? ? 1_555 C G 16 O6 ? ? A CFZ 11 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C CFZ 11 O2 ? ? ? 1_555 C G 16 N2 ? ? A CFZ 11 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C UMS 12 N3 ? ? ? 1_555 C A 15 N3 ? ? A UMS 12 A A 15 1_555 ? ? ? ? ? ? 'UMS-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 5 A . ? GLY 5 L GLU 6 A ? GLU 6 L 1 -1.00 2 GLY 35 A . ? GLY 35 L ARG 36 A ? ARG 36 L 1 -16.51 3 SER 22 B . ? SER 22 H PRO 23 B ? PRO 23 H 1 -12.40 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER B 5 ? ASP B 6 ? SER H 5 ASP H 6 AA1 2 GLN B 161 ? PRO B 166 ? GLN H 161 PRO H 166 AA1 3 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 AA1 4 PRO B 208 ? LYS B 212 ? PRO H 208 LYS H 212 AA1 5 TRP B 219 ? TRP B 227 ? TRP H 219 TRP H 227 AA1 6 GLY B 238 ? HIS B 242 ? GLY H 238 HIS H 242 AA1 7 MET B 185 ? ALA B 188 ? MET H 185 ALA H 188 AA2 1 GLN B 15 ? ARG B 20 ? GLN H 15 ARG H 20 AA2 2 GLU B 25 ? LEU B 32 ? GLU H 25 LEU H 32 AA2 3 TRP B 37 ? THR B 40 ? TRP H 37 THR H 40 AA2 4 ALA B 101 ? LEU B 105 ? ALA H 101 LEU H 105 AA2 5 LYS B 77 ? ILE B 86 ? LYS H 77 ILE H 86 AA2 6 LEU B 59 ? ILE B 63 ? LEU H 59 ILE H 63 AA2 7 GLN B 15 ? ARG B 20 ? GLN H 15 ARG H 20 AA3 1 LEU B 46 ? TYR B 47 ? LEU H 46 TYR H 47 AA3 2 LYS B 52 ? ASN B 53 ? LYS H 52 ASN H 53 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER B 5 ? N SER H 5 O VAL B 162 ? O VAL H 162 AA1 2 3 O VAL B 163 ? O VAL H 163 N VAL B 138 ? N VAL H 138 AA1 3 4 N ARG B 137 ? N ARG H 137 O VAL B 210 ? O VAL H 210 AA1 4 5 N MET B 211 ? N MET H 211 O TYR B 220 ? O TYR H 220 AA1 5 6 N TRP B 227 ? N TRP H 227 O PHE B 239 ? O PHE H 239 AA1 6 7 O TYR B 240 ? O TYR H 240 N PHE B 186 ? N PHE H 186 AA2 1 2 N ARG B 20 ? N ARG H 20 O GLU B 25 ? O GLU H 25 AA2 2 3 N SER B 31 ? N SER H 31 O LEU B 39 ? O LEU H 39 AA2 3 4 N VAL B 38 ? N VAL H 38 O MET B 103 ? O MET H 103 AA2 4 5 O LEU B 102 ? O LEU H 102 N TYR B 85 ? N TYR H 85 AA2 5 6 O LYS B 77 ? O LYS H 77 N ILE B 63 ? N ILE H 63 AA2 6 7 O LEU B 60 ? O LEU H 60 N PHE B 19 ? N PHE H 19 AA3 1 2 N TYR B 47 ? N TYR H 47 O LYS B 52 ? O LYS H 52 # _atom_sites.entry_id 5DO4 _atom_sites.fract_transf_matrix[1][1] 0.011953 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007186 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022466 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA F MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 ? ? ? L . n A 1 2 PHE 2 2 ? ? ? L . n A 1 3 GLY 3 3 ? ? ? L . n A 1 4 SER 4 4 ? ? ? L . n A 1 5 GLY 5 5 5 GLY GLY L . n A 1 6 GLU 6 6 6 GLU GLU L . n A 1 7 ALA 7 7 7 ALA ALA L . n A 1 8 ASP 8 8 8 ASP ASP L . n A 1 9 CYS 9 9 9 CYS CYS L . n A 1 10 GLY 10 10 10 GLY GLY L . n A 1 11 LEU 11 11 11 LEU LEU L . n A 1 12 ARG 12 12 12 ARG ARG L . n A 1 13 PRO 13 13 13 PRO PRO L . n A 1 14 LEU 14 14 14 LEU LEU L . n A 1 15 PHE 15 15 15 PHE PHE L . n A 1 16 GLU 16 16 16 GLU GLU L . n A 1 17 LYS 17 17 17 LYS LYS L . n A 1 18 LYS 18 18 18 LYS LYS L . n A 1 19 SER 19 19 19 SER SER L . n A 1 20 LEU 20 20 20 LEU LEU L . n A 1 21 GLU 21 21 21 GLU GLU L . n A 1 22 ASP 22 22 22 ASP ASP L . n A 1 23 LYS 23 23 23 LYS LYS L . n A 1 24 THR 24 24 24 THR THR L . n A 1 25 GLU 25 25 25 GLU GLU L . n A 1 26 ARG 26 26 26 ARG ARG L . n A 1 27 GLU 27 27 27 GLU GLU L . n A 1 28 LEU 28 28 28 LEU LEU L . n A 1 29 LEU 29 29 29 LEU LEU L . n A 1 30 GLU 30 30 30 GLU GLU L . n A 1 31 SER 31 31 31 SER SER L . n A 1 32 TYR 32 32 32 TYR TYR L . n A 1 33 ILE 33 33 33 ILE ILE L . n A 1 34 ASP 34 34 34 ASP ASP L . n A 1 35 GLY 35 35 35 GLY GLY L . n A 1 36 ARG 36 36 36 ARG ARG L . n B 2 1 ILE 1 1 1 ILE ILE H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLU 3 3 3 GLU GLU H . n B 2 4 GLY 4 4 4 GLY GLY H . n B 2 5 SER 5 5 5 SER SER H . n B 2 6 ASP 6 6 6 ASP ASP H . n B 2 7 ALA 7 7 7 ALA ALA H . n B 2 8 GLU 8 8 8 GLU GLU H . n B 2 9 ILE 9 9 9 ILE ILE H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 MET 11 11 11 MET MET H . n B 2 12 SER 12 12 12 SER SER H . n B 2 13 PRO 13 13 13 PRO PRO H . n B 2 14 TRP 14 14 14 TRP TRP H . n B 2 15 GLN 15 15 15 GLN GLN H . n B 2 16 VAL 16 16 16 VAL VAL H . n B 2 17 MET 17 17 17 MET MET H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 PHE 19 19 19 PHE PHE H . n B 2 20 ARG 20 20 20 ARG ARG H . n B 2 21 LYS 21 21 21 LYS LYS H . n B 2 22 SER 22 22 22 SER SER H . n B 2 23 PRO 23 23 23 PRO PRO H . n B 2 24 GLN 24 24 24 GLN GLN H . n B 2 25 GLU 25 25 25 GLU GLU H . n B 2 26 LEU 26 26 26 LEU LEU H . n B 2 27 LEU 27 27 27 LEU LEU H . n B 2 28 CYS 28 28 28 CYS CYS H . n B 2 29 GLY 29 29 29 GLY GLY H . n B 2 30 ALA 30 30 30 ALA ALA H . n B 2 31 SER 31 31 31 SER SER H . n B 2 32 LEU 32 32 32 LEU LEU H . n B 2 33 ILE 33 33 33 ILE ILE H . n B 2 34 SER 34 34 34 SER SER H . n B 2 35 ASP 35 35 35 ASP ASP H . n B 2 36 ARG 36 36 36 ARG ARG H . n B 2 37 TRP 37 37 37 TRP TRP H . n B 2 38 VAL 38 38 38 VAL VAL H . n B 2 39 LEU 39 39 39 LEU LEU H . n B 2 40 THR 40 40 40 THR THR H . n B 2 41 ALA 41 41 41 ALA ALA H . n B 2 42 ALA 42 42 42 ALA ALA H . n B 2 43 HIS 43 43 43 HIS HIS H . n B 2 44 CYS 44 44 44 CYS CYS H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 LEU 46 46 46 LEU LEU H . n B 2 47 TYR 47 47 47 TYR TYR H . n B 2 48 PRO 48 48 48 PRO PRO H . n B 2 49 PRO 49 49 49 PRO PRO H . n B 2 50 TRP 50 50 50 TRP TRP H . n B 2 51 ASP 51 51 51 ASP ASP H . n B 2 52 LYS 52 52 52 LYS LYS H . n B 2 53 ASN 53 53 53 ASN ASN H . n B 2 54 PHE 54 54 54 PHE PHE H . n B 2 55 THR 55 55 55 THR THR H . n B 2 56 GLU 56 56 56 GLU GLU H . n B 2 57 ASN 57 57 57 ASN ASN H . n B 2 58 ASP 58 58 58 ASP ASP H . n B 2 59 LEU 59 59 59 LEU LEU H . n B 2 60 LEU 60 60 60 LEU LEU H . n B 2 61 VAL 61 61 61 VAL VAL H . n B 2 62 ARG 62 62 62 ARG ARG H . n B 2 63 ILE 63 63 63 ILE ILE H . n B 2 64 GLY 64 64 64 GLY GLY H . n B 2 65 LYS 65 65 65 LYS LYS H . n B 2 66 HIS 66 66 66 HIS HIS H . n B 2 67 SER 67 67 67 SER SER H . n B 2 68 ARG 68 68 68 ARG ARG H . n B 2 69 THR 69 69 69 THR THR H . n B 2 70 ARG 70 70 70 ARG ARG H . n B 2 71 TYR 71 71 71 TYR TYR H . n B 2 72 GLU 72 72 72 GLU GLU H . n B 2 73 ARG 73 73 73 ARG ARG H . n B 2 74 ASN 74 74 74 ASN ASN H . n B 2 75 ILE 75 75 75 ILE ILE H . n B 2 76 GLU 76 76 76 GLU GLU H . n B 2 77 LYS 77 77 77 LYS LYS H . n B 2 78 ILE 78 78 78 ILE ILE H . n B 2 79 SER 79 79 79 SER SER H . n B 2 80 MET 80 80 80 MET MET H . n B 2 81 LEU 81 81 81 LEU LEU H . n B 2 82 GLU 82 82 82 GLU GLU H . n B 2 83 LYS 83 83 83 LYS LYS H . n B 2 84 ILE 84 84 84 ILE ILE H . n B 2 85 TYR 85 85 85 TYR TYR H . n B 2 86 ILE 86 86 86 ILE ILE H . n B 2 87 HIS 87 87 87 HIS HIS H . n B 2 88 PRO 88 88 88 PRO PRO H . n B 2 89 ARG 89 89 89 ARG ARG H . n B 2 90 TYR 90 90 90 TYR TYR H . n B 2 91 ASN 91 91 91 ASN ASN H . n B 2 92 TRP 92 92 92 TRP TRP H . n B 2 93 ARG 93 93 93 ARG ARG H . n B 2 94 GLU 94 94 94 GLU GLU H . n B 2 95 ASN 95 95 95 ASN ASN H . n B 2 96 LEU 96 96 96 LEU LEU H . n B 2 97 ASP 97 97 97 ASP ASP H . n B 2 98 ARG 98 98 98 ARG ARG H . n B 2 99 ASP 99 99 99 ASP ASP H . n B 2 100 ILE 100 100 100 ILE ILE H . n B 2 101 ALA 101 101 101 ALA ALA H . n B 2 102 LEU 102 102 102 LEU LEU H . n B 2 103 MET 103 103 103 MET MET H . n B 2 104 LYS 104 104 104 LYS LYS H . n B 2 105 LEU 105 105 105 LEU LEU H . n B 2 106 LYS 106 106 106 LYS LYS H . n B 2 107 LYS 107 107 107 LYS LYS H . n B 2 108 PRO 108 108 108 PRO PRO H . n B 2 109 VAL 109 109 109 VAL VAL H . n B 2 110 ALA 110 110 110 ALA ALA H . n B 2 111 PHE 111 111 111 PHE PHE H . n B 2 112 SER 112 112 112 SER SER H . n B 2 113 ASP 113 113 113 ASP ASP H . n B 2 114 TYR 114 114 114 TYR TYR H . n B 2 115 ILE 115 115 115 ILE ILE H . n B 2 116 HIS 116 116 116 HIS HIS H . n B 2 117 PRO 117 117 117 PRO PRO H . n B 2 118 VAL 118 118 118 VAL VAL H . n B 2 119 CYS 119 119 119 CYS CYS H . n B 2 120 LEU 120 120 120 LEU LEU H . n B 2 121 PRO 121 121 121 PRO PRO H . n B 2 122 ASP 122 122 122 ASP ASP H . n B 2 123 ARG 123 123 123 ARG ARG H . n B 2 124 GLU 124 124 124 GLU GLU H . n B 2 125 THR 125 125 125 THR THR H . n B 2 126 ALA 126 126 126 ALA ALA H . n B 2 127 ALA 127 127 127 ALA ALA H . n B 2 128 SER 128 128 128 SER SER H . n B 2 129 LEU 129 129 129 LEU LEU H . n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 ? ? ? H . n B 2 149 THR 149 149 ? ? ? H . n B 2 150 ALA 150 150 150 ALA ALA H . n B 2 151 ASN 151 151 151 ASN ASN H . n B 2 152 VAL 152 152 152 VAL VAL H . n B 2 153 GLY 153 153 153 GLY GLY H . n B 2 154 LYS 154 154 154 LYS LYS H . n B 2 155 GLY 155 155 155 GLY GLY H . n B 2 156 GLN 156 156 156 GLN GLN H . n B 2 157 PRO 157 157 157 PRO PRO H . n B 2 158 SER 158 158 158 SER SER H . n B 2 159 VAL 159 159 159 VAL VAL H . n B 2 160 LEU 160 160 160 LEU LEU H . n B 2 161 GLN 161 161 161 GLN GLN H . n B 2 162 VAL 162 162 162 VAL VAL H . n B 2 163 VAL 163 163 163 VAL VAL H . n B 2 164 ASN 164 164 164 ASN ASN H . n B 2 165 LEU 165 165 165 LEU LEU H . n B 2 166 PRO 166 166 166 PRO PRO H . n B 2 167 ILE 167 167 167 ILE ILE H . n B 2 168 VAL 168 168 168 VAL VAL H . n B 2 169 GLU 169 169 169 GLU GLU H . n B 2 170 ARG 170 170 170 ARG ARG H . n B 2 171 PRO 171 171 171 PRO PRO H . n B 2 172 VAL 172 172 172 VAL VAL H . n B 2 173 CYS 173 173 173 CYS CYS H . n B 2 174 LYS 174 174 174 LYS LYS H . n B 2 175 ASP 175 175 175 ASP ASP H . n B 2 176 SER 176 176 176 SER SER H . n B 2 177 THR 177 177 177 THR THR H . n B 2 178 ARG 178 178 178 ARG ARG H . n B 2 179 ILE 179 179 179 ILE ILE H . n B 2 180 ARG 180 180 180 ARG ARG H . n B 2 181 ILE 181 181 181 ILE ILE H . n B 2 182 THR 182 182 182 THR THR H . n B 2 183 ASP 183 183 183 ASP ASP H . n B 2 184 ASN 184 184 184 ASN ASN H . n B 2 185 MET 185 185 185 MET MET H . n B 2 186 PHE 186 186 186 PHE PHE H . n B 2 187 CYS 187 187 187 CYS CYS H . n B 2 188 ALA 188 188 188 ALA ALA H . n B 2 189 GLY 189 189 189 GLY GLY H . n B 2 190 TYR 190 190 190 TYR TYR H . n B 2 191 LYS 191 191 191 LYS LYS H . n B 2 192 PRO 192 192 192 PRO PRO H . n B 2 193 ASP 193 193 193 ASP ASP H . n B 2 194 GLU 194 194 194 GLU GLU H . n B 2 195 GLY 195 195 195 GLY GLY H . n B 2 196 LYS 196 196 196 LYS LYS H . n B 2 197 ARG 197 197 197 ARG ARG H . n B 2 198 GLY 198 198 198 GLY GLY H . n B 2 199 ASP 199 199 199 ASP ASP H . n B 2 200 ALA 200 200 200 ALA ALA H . n B 2 201 CYS 201 201 201 CYS CYS H . n B 2 202 GLU 202 202 202 GLU GLU H . n B 2 203 GLY 203 203 203 GLY GLY H . n B 2 204 ASP 204 204 204 ASP ASP H . n B 2 205 SER 205 205 205 SER SER H . n B 2 206 GLY 206 206 206 GLY GLY H . n B 2 207 GLY 207 207 207 GLY GLY H . n B 2 208 PRO 208 208 208 PRO PRO H . n B 2 209 PHE 209 209 209 PHE PHE H . n B 2 210 VAL 210 210 210 VAL VAL H . n B 2 211 MET 211 211 211 MET MET H . n B 2 212 LYS 212 212 212 LYS LYS H . n B 2 213 SER 213 213 213 SER SER H . n B 2 214 PRO 214 214 214 PRO PRO H . n B 2 215 PHE 215 215 215 PHE PHE H . n B 2 216 ASN 216 216 216 ASN ASN H . n B 2 217 ASN 217 217 217 ASN ASN H . n B 2 218 ARG 218 218 218 ARG ARG H . n B 2 219 TRP 219 219 219 TRP TRP H . n B 2 220 TYR 220 220 220 TYR TYR H . n B 2 221 GLN 221 221 221 GLN GLN H . n B 2 222 MET 222 222 222 MET MET H . n B 2 223 GLY 223 223 223 GLY GLY H . n B 2 224 ILE 224 224 224 ILE ILE H . n B 2 225 VAL 225 225 225 VAL VAL H . n B 2 226 SER 226 226 226 SER SER H . n B 2 227 TRP 227 227 227 TRP TRP H . n B 2 228 GLY 228 228 228 GLY GLY H . n B 2 229 GLU 229 229 229 GLU GLU H . n B 2 230 GLY 230 230 230 GLY GLY H . n B 2 231 CYS 231 231 231 CYS CYS H . n B 2 232 ASP 232 232 232 ASP ASP H . n B 2 233 ARG 233 233 233 ARG ARG H . n B 2 234 ASP 234 234 234 ASP ASP H . n B 2 235 GLY 235 235 235 GLY GLY H . n B 2 236 LYS 236 236 236 LYS LYS H . n B 2 237 TYR 237 237 237 TYR TYR H . n B 2 238 GLY 238 238 238 GLY GLY H . n B 2 239 PHE 239 239 239 PHE PHE H . n B 2 240 TYR 240 240 240 TYR TYR H . n B 2 241 THR 241 241 241 THR THR H . n B 2 242 HIS 242 242 242 HIS HIS H . n B 2 243 VAL 243 243 243 VAL VAL H . n B 2 244 PHE 244 244 244 PHE PHE H . n B 2 245 ARG 245 245 245 ARG ARG H . n B 2 246 LEU 246 246 246 LEU LEU H . n B 2 247 LYS 247 247 247 LYS LYS H . n B 2 248 LYS 248 248 248 LYS LYS H . n B 2 249 TRP 249 249 249 TRP TRP H . n B 2 250 ILE 250 250 250 ILE ILE H . n B 2 251 GLN 251 251 251 GLN GLN H . n B 2 252 LYS 252 252 252 LYS LYS H . n B 2 253 VAL 253 253 253 VAL VAL H . n B 2 254 ILE 254 254 254 ILE ILE H . n B 2 255 ASP 255 255 255 ASP ASP H . n B 2 256 GLN 256 256 256 GLN GLN H . n B 2 257 PHE 257 257 257 PHE PHE H . n B 2 258 GLY 258 258 258 GLY GLY H . n C 3 1 G 1 1 1 G G A . n C 3 2 G 2 2 2 G G A . n C 3 3 G 3 3 3 G G A . n C 3 4 A 4 4 4 A A A . n C 3 5 A 5 5 5 A A A . n C 3 6 CFZ 6 6 6 CFZ CFZ A . n C 3 7 A 7 7 7 A A A . n C 3 8 A 8 8 8 A A A . n C 3 9 A 9 9 9 A A A . n C 3 10 G 10 10 10 G G A . n C 3 11 CFZ 11 11 11 CFZ CFZ A . n C 3 12 UMS 12 12 12 UMS UMS A . n C 3 13 G 13 13 13 G G A . n C 3 14 A 14 14 14 A A A . n C 3 15 A 15 15 15 A A A . n C 3 16 G 16 16 16 G G A . n C 3 17 UFT 17 17 17 UFT UFT A . n C 3 18 ADS 18 18 18 ADS AUS A . n C 3 19 CFZ 19 19 19 CFZ CFZ A . n C 3 20 UFT 20 20 20 UFT UFT A . n C 3 21 UMS 21 21 21 UMS UMS A . n C 3 22 A 22 22 22 A A A . n C 3 23 CFZ 23 23 23 CFZ CFZ A . n C 3 24 CFZ 24 24 24 CFZ CFZ A . n C 3 25 CFZ 25 25 25 CFZ CFZ A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G6 1 301 259 0G6 0G6 H . E 5 NAG 1 302 260 NAG NAG H . F 6 EDO 1 303 261 EDO EDO H . G 6 EDO 1 304 262 EDO EDO H . H 6 EDO 1 305 263 EDO EDO H . I 6 EDO 1 306 264 EDO EDO H . J 7 GOL 1 307 265 GOL GOL H . K 7 GOL 1 308 266 GOL GOL H . L 8 CA 1 309 2 CA CA H . M 9 MRD 1 101 267 MRD MPD A . N 10 MG 1 102 1 MG MG A . O 11 HOH 1 101 151 HOH HOH L . O 11 HOH 2 102 148 HOH HOH L . O 11 HOH 3 103 117 HOH HOH L . O 11 HOH 4 104 50 HOH HOH L . O 11 HOH 5 105 118 HOH HOH L . O 11 HOH 6 106 19 HOH HOH L . O 11 HOH 7 107 20 HOH HOH L . O 11 HOH 8 108 48 HOH HOH L . O 11 HOH 9 109 149 HOH HOH L . O 11 HOH 10 110 137 HOH HOH L . O 11 HOH 11 111 150 HOH HOH L . O 11 HOH 12 112 99 HOH HOH L . P 11 HOH 1 401 165 HOH HOH H . P 11 HOH 2 402 86 HOH HOH H . P 11 HOH 3 403 92 HOH HOH H . P 11 HOH 4 404 3 HOH HOH H . P 11 HOH 5 405 39 HOH HOH H . P 11 HOH 6 406 106 HOH HOH H . P 11 HOH 7 407 73 HOH HOH H . P 11 HOH 8 408 29 HOH HOH H . P 11 HOH 9 409 111 HOH HOH H . P 11 HOH 10 410 79 HOH HOH H . P 11 HOH 11 411 101 HOH HOH H . P 11 HOH 12 412 105 HOH HOH H . P 11 HOH 13 413 8 HOH HOH H . P 11 HOH 14 414 124 HOH HOH H . P 11 HOH 15 415 72 HOH HOH H . P 11 HOH 16 416 164 HOH HOH H . P 11 HOH 17 417 22 HOH HOH H . P 11 HOH 18 418 52 HOH HOH H . P 11 HOH 19 419 159 HOH HOH H . P 11 HOH 20 420 58 HOH HOH H . P 11 HOH 21 421 21 HOH HOH H . P 11 HOH 22 422 45 HOH HOH H . P 11 HOH 23 423 141 HOH HOH H . P 11 HOH 24 424 136 HOH HOH H . P 11 HOH 25 425 110 HOH HOH H . P 11 HOH 26 426 62 HOH HOH H . P 11 HOH 27 427 90 HOH HOH H . P 11 HOH 28 428 70 HOH HOH H . P 11 HOH 29 429 26 HOH HOH H . P 11 HOH 30 430 46 HOH HOH H . P 11 HOH 31 431 83 HOH HOH H . P 11 HOH 32 432 147 HOH HOH H . P 11 HOH 33 433 80 HOH HOH H . P 11 HOH 34 434 131 HOH HOH H . P 11 HOH 35 435 27 HOH HOH H . P 11 HOH 36 436 71 HOH HOH H . P 11 HOH 37 437 61 HOH HOH H . P 11 HOH 38 438 84 HOH HOH H . P 11 HOH 39 439 102 HOH HOH H . P 11 HOH 40 440 100 HOH HOH H . P 11 HOH 41 441 23 HOH HOH H . P 11 HOH 42 442 40 HOH HOH H . P 11 HOH 43 443 77 HOH HOH H . P 11 HOH 44 444 34 HOH HOH H . P 11 HOH 45 445 95 HOH HOH H . P 11 HOH 46 446 49 HOH HOH H . P 11 HOH 47 447 24 HOH HOH H . P 11 HOH 48 448 144 HOH HOH H . P 11 HOH 49 449 63 HOH HOH H . P 11 HOH 50 450 119 HOH HOH H . P 11 HOH 51 451 38 HOH HOH H . P 11 HOH 52 452 55 HOH HOH H . P 11 HOH 53 453 127 HOH HOH H . P 11 HOH 54 454 139 HOH HOH H . P 11 HOH 55 455 161 HOH HOH H . P 11 HOH 56 456 74 HOH HOH H . P 11 HOH 57 457 16 HOH HOH H . P 11 HOH 58 458 85 HOH HOH H . P 11 HOH 59 459 44 HOH HOH H . P 11 HOH 60 460 10 HOH HOH H . P 11 HOH 61 461 114 HOH HOH H . P 11 HOH 62 462 15 HOH HOH H . P 11 HOH 63 463 41 HOH HOH H . P 11 HOH 64 464 78 HOH HOH H . P 11 HOH 65 465 104 HOH HOH H . P 11 HOH 66 466 9 HOH HOH H . P 11 HOH 67 467 145 HOH HOH H . P 11 HOH 68 468 7 HOH HOH H . P 11 HOH 69 469 87 HOH HOH H . P 11 HOH 70 470 56 HOH HOH H . P 11 HOH 71 471 35 HOH HOH H . P 11 HOH 72 472 129 HOH HOH H . P 11 HOH 73 473 43 HOH HOH H . P 11 HOH 74 474 47 HOH HOH H . P 11 HOH 75 475 32 HOH HOH H . P 11 HOH 76 476 14 HOH HOH H . P 11 HOH 77 477 59 HOH HOH H . P 11 HOH 78 478 113 HOH HOH H . P 11 HOH 79 479 30 HOH HOH H . P 11 HOH 80 480 17 HOH HOH H . P 11 HOH 81 481 91 HOH HOH H . P 11 HOH 82 482 82 HOH HOH H . P 11 HOH 83 483 18 HOH HOH H . P 11 HOH 84 484 36 HOH HOH H . P 11 HOH 85 485 51 HOH HOH H . P 11 HOH 86 486 25 HOH HOH H . P 11 HOH 87 487 81 HOH HOH H . P 11 HOH 88 488 33 HOH HOH H . P 11 HOH 89 489 11 HOH HOH H . P 11 HOH 90 490 53 HOH HOH H . P 11 HOH 91 491 121 HOH HOH H . P 11 HOH 92 492 125 HOH HOH H . P 11 HOH 93 493 115 HOH HOH H . P 11 HOH 94 494 109 HOH HOH H . P 11 HOH 95 495 54 HOH HOH H . P 11 HOH 96 496 57 HOH HOH H . P 11 HOH 97 497 98 HOH HOH H . P 11 HOH 98 498 75 HOH HOH H . P 11 HOH 99 499 65 HOH HOH H . P 11 HOH 100 500 130 HOH HOH H . P 11 HOH 101 501 126 HOH HOH H . P 11 HOH 102 502 89 HOH HOH H . P 11 HOH 103 503 160 HOH HOH H . P 11 HOH 104 504 42 HOH HOH H . P 11 HOH 105 505 60 HOH HOH H . P 11 HOH 106 506 107 HOH HOH H . P 11 HOH 107 507 122 HOH HOH H . P 11 HOH 108 508 88 HOH HOH H . P 11 HOH 109 509 76 HOH HOH H . P 11 HOH 110 510 112 HOH HOH H . P 11 HOH 111 511 28 HOH HOH H . P 11 HOH 112 512 146 HOH HOH H . P 11 HOH 113 513 103 HOH HOH H . P 11 HOH 114 514 142 HOH HOH H . P 11 HOH 115 515 166 HOH HOH H . P 11 HOH 116 516 153 HOH HOH H . P 11 HOH 117 517 152 HOH HOH H . P 11 HOH 118 518 12 HOH HOH H . P 11 HOH 119 519 93 HOH HOH H . P 11 HOH 120 520 97 HOH HOH H . P 11 HOH 121 521 116 HOH HOH H . P 11 HOH 122 522 143 HOH HOH H . P 11 HOH 123 523 120 HOH HOH H . P 11 HOH 124 524 135 HOH HOH H . P 11 HOH 125 525 13 HOH HOH H . P 11 HOH 126 526 140 HOH HOH H . P 11 HOH 127 527 108 HOH HOH H . P 11 HOH 128 528 128 HOH HOH H . P 11 HOH 129 529 94 HOH HOH H . P 11 HOH 130 530 138 HOH HOH H . P 11 HOH 131 531 157 HOH HOH H . P 11 HOH 132 532 158 HOH HOH H . Q 11 HOH 1 201 163 HOH HOH A . Q 11 HOH 2 202 64 HOH HOH A . Q 11 HOH 3 203 67 HOH HOH A . Q 11 HOH 4 204 134 HOH HOH A . Q 11 HOH 5 205 37 HOH HOH A . Q 11 HOH 6 206 69 HOH HOH A . Q 11 HOH 7 207 31 HOH HOH A . Q 11 HOH 8 208 162 HOH HOH A . Q 11 HOH 9 209 68 HOH HOH A . Q 11 HOH 10 210 123 HOH HOH A . Q 11 HOH 11 211 6 HOH HOH A . Q 11 HOH 12 212 96 HOH HOH A . Q 11 HOH 13 213 132 HOH HOH A . Q 11 HOH 14 214 156 HOH HOH A . Q 11 HOH 15 215 5 HOH HOH A . Q 11 HOH 16 216 66 HOH HOH A . Q 11 HOH 17 217 133 HOH HOH A . Q 11 HOH 18 218 155 HOH HOH A . Q 11 HOH 19 219 154 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8460 ? 1 MORE -22 ? 1 'SSA (A^2)' 15510 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B ARG 233 ? H ARG 233 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? B LYS 236 ? H LYS 236 ? 1_555 87.9 ? 2 O ? B ARG 233 ? H ARG 233 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 405 ? 1_555 107.8 ? 3 O ? B LYS 236 ? H LYS 236 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 405 ? 1_555 163.9 ? 4 O ? B ARG 233 ? H ARG 233 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 442 ? 1_555 88.6 ? 5 O ? B LYS 236 ? H LYS 236 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 442 ? 1_555 96.0 ? 6 O ? P HOH . ? H HOH 405 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 442 ? 1_555 88.6 ? 7 O ? B ARG 233 ? H ARG 233 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 463 ? 1_555 155.0 ? 8 O ? B LYS 236 ? H LYS 236 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 463 ? 1_555 69.1 ? 9 O ? P HOH . ? H HOH 405 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 463 ? 1_555 96.0 ? 10 O ? P HOH . ? H HOH 442 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 463 ? 1_555 84.4 ? 11 O ? B ARG 233 ? H ARG 233 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 504 ? 1_555 92.7 ? 12 O ? B LYS 236 ? H LYS 236 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 504 ? 1_555 79.5 ? 13 O ? P HOH . ? H HOH 405 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 504 ? 1_555 95.4 ? 14 O ? P HOH . ? H HOH 442 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 504 ? 1_555 175.2 ? 15 O ? P HOH . ? H HOH 463 ? 1_555 CA ? L CA . ? H CA 309 ? 1_555 O ? P HOH . ? H HOH 504 ? 1_555 92.5 ? 16 OP2 ? C A 8 ? A A 8 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 OP2 ? C A 9 ? A A 9 ? 1_555 84.2 ? 17 OP2 ? C A 8 ? A A 8 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 202 ? 1_555 93.0 ? 18 OP2 ? C A 9 ? A A 9 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 202 ? 1_555 171.0 ? 19 OP2 ? C A 8 ? A A 8 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 210 ? 1_555 174.4 ? 20 OP2 ? C A 9 ? A A 9 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 210 ? 1_555 101.4 ? 21 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 210 ? 1_555 81.5 ? 22 OP2 ? C A 8 ? A A 8 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 92.0 ? 23 OP2 ? C A 9 ? A A 9 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 88.2 ? 24 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 83.3 ? 25 O ? Q HOH . ? A HOH 210 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 211 ? 1_555 88.2 ? 26 OP2 ? C A 8 ? A A 8 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 215 ? 1_555 96.4 ? 27 OP2 ? C A 9 ? A A 9 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 215 ? 1_555 90.7 ? 28 O ? Q HOH . ? A HOH 202 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 215 ? 1_555 98.2 ? 29 O ? Q HOH . ? A HOH 210 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 215 ? 1_555 83.7 ? 30 O ? Q HOH . ? A HOH 211 ? 1_555 MG ? N MG . ? A MG 102 ? 1_555 O ? Q HOH . ? A HOH 215 ? 1_555 171.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-14 2 'Structure model' 1 1 2016-10-12 3 'Structure model' 1 2 2016-10-26 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-09-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' pdbx_struct_oper_list 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.value' 8 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 9 4 'Structure model' '_struct_conn.conn_type_id' 10 4 'Structure model' '_struct_conn.id' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 4 'Structure model' '_struct_conn.pdbx_role' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 5 'Structure model' '_chem_comp.pdbx_synonyms' 29 5 'Structure model' '_database_2.pdbx_DOI' 30 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0131 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE L 15 ? ? -129.97 -84.51 2 1 ASP L 34 ? ? 97.69 -123.02 3 1 TYR H 47 ? ? -151.06 86.18 4 1 ASN H 53 ? ? -160.01 80.65 5 1 HIS H 66 ? ? -124.14 -58.96 6 1 ILE H 75 ? ? -122.53 -61.74 7 1 GLU H 94 ? ? -96.38 -76.90 8 1 SER H 226 ? ? -124.73 -55.88 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 L ARG 26 ? CG ? A ARG 26 CG 2 1 Y 1 L ARG 26 ? CD ? A ARG 26 CD 3 1 Y 1 L ARG 26 ? NE ? A ARG 26 NE 4 1 Y 1 L ARG 26 ? CZ ? A ARG 26 CZ 5 1 Y 1 L ARG 26 ? NH1 ? A ARG 26 NH1 6 1 Y 1 L ARG 26 ? NH2 ? A ARG 26 NH2 7 1 Y 1 L LEU 29 ? CG ? A LEU 29 CG 8 1 Y 1 L LEU 29 ? CD1 ? A LEU 29 CD1 9 1 Y 1 L LEU 29 ? CD2 ? A LEU 29 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR 1 ? A THR 1 2 1 Y 1 L PHE 2 ? A PHE 2 3 1 Y 1 L GLY 3 ? A GLY 3 4 1 Y 1 L SER 4 ? A SER 4 5 1 Y 1 H TRP 148 ? B TRP 148 6 1 Y 1 H THR 149 ? B THR 149 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0G6 N N N N 1 0G6 CA C N R 2 0G6 C C N N 3 0G6 O O N N 4 0G6 CB C N N 5 0G6 CG C Y N 6 0G6 CD1 C Y N 7 0G6 CD2 C Y N 8 0G6 CE1 C Y N 9 0G6 CE2 C Y N 10 0G6 CZ C Y N 11 0G6 N1 N N N 12 0G6 CA1 C N S 13 0G6 C1 C N N 14 0G6 O1 O N N 15 0G6 CB1 C N N 16 0G6 CG1 C N N 17 0G6 CD C N N 18 0G6 N2 N N N 19 0G6 CA2 C N S 20 0G6 C2 C N S 21 0G6 O2 O N N 22 0G6 CB2 C N N 23 0G6 CG2 C N N 24 0G6 CD3 C N N 25 0G6 NE N N N 26 0G6 CZ1 C N N 27 0G6 NH1 N N N 28 0G6 NH2 N N N 29 0G6 C3 C N N 30 0G6 CL CL N N 31 0G6 H H N N 32 0G6 H2 H N N 33 0G6 HA H N N 34 0G6 HB2 H N N 35 0G6 HB3 H N N 36 0G6 HD1 H N N 37 0G6 HD2 H N N 38 0G6 HE1 H N N 39 0G6 HE2 H N N 40 0G6 HZ H N N 41 0G6 HA1 H N N 42 0G6 HB21 H N N 43 0G6 HB31 H N N 44 0G6 HG2 H N N 45 0G6 HG3 H N N 46 0G6 HD21 H N N 47 0G6 HD3 H N N 48 0G6 H1 H N N 49 0G6 HA2 H N N 50 0G6 HB22 H N N 51 0G6 HB32 H N N 52 0G6 HG21 H N N 53 0G6 HG31 H N N 54 0G6 HD22 H N N 55 0G6 HD31 H N N 56 0G6 HE H N N 57 0G6 HH11 H N N 58 0G6 HH12 H N N 59 0G6 HH21 H N N 60 0G6 HH22 H N N 61 0G6 H11 H N N 62 0G6 H21 H N N 63 0G6 H33 H N N 64 0G6 H34 H N N 65 A OP3 O N N 66 A P P N N 67 A OP1 O N N 68 A OP2 O N N 69 A "O5'" O N N 70 A "C5'" C N N 71 A "C4'" C N R 72 A "O4'" O N N 73 A "C3'" C N S 74 A "O3'" O N N 75 A "C2'" C N R 76 A "O2'" O N N 77 A "C1'" C N R 78 A N9 N Y N 79 A C8 C Y N 80 A N7 N Y N 81 A C5 C Y N 82 A C6 C Y N 83 A N6 N N N 84 A N1 N Y N 85 A C2 C Y N 86 A N3 N Y N 87 A C4 C Y N 88 A HOP3 H N N 89 A HOP2 H N N 90 A "H5'" H N N 91 A "H5''" H N N 92 A "H4'" H N N 93 A "H3'" H N N 94 A "HO3'" H N N 95 A "H2'" H N N 96 A "HO2'" H N N 97 A "H1'" H N N 98 A H8 H N N 99 A H61 H N N 100 A H62 H N N 101 A H2 H N N 102 ADS P P N N 103 ADS O1P O N N 104 ADS S2P S N N 105 ADS S3P S N N 106 ADS "O5'" O N N 107 ADS "C5'" C N N 108 ADS "C4'" C N R 109 ADS "O4'" O N N 110 ADS "C3'" C N S 111 ADS "O3'" O N N 112 ADS "C2'" C N R 113 ADS "O2'" O N N 114 ADS "C1'" C N R 115 ADS N9 N Y N 116 ADS C8 C Y N 117 ADS N7 N Y N 118 ADS C5 C Y N 119 ADS C6 C Y N 120 ADS N6 N N N 121 ADS N1 N Y N 122 ADS C2 C Y N 123 ADS N3 N Y N 124 ADS C4 C Y N 125 ADS HSP2 H N N 126 ADS HSP3 H N N 127 ADS "H5'1" H N N 128 ADS "H5'2" H N N 129 ADS "H4'" H N N 130 ADS "H3'" H N N 131 ADS "HO3'" H N N 132 ADS "H2'" H N N 133 ADS "HO2'" H N N 134 ADS "H1'" H N N 135 ADS H8 H N N 136 ADS HN61 H N N 137 ADS HN62 H N N 138 ADS H2 H N N 139 ALA N N N N 140 ALA CA C N S 141 ALA C C N N 142 ALA O O N N 143 ALA CB C N N 144 ALA OXT O N N 145 ALA H H N N 146 ALA H2 H N N 147 ALA HA H N N 148 ALA HB1 H N N 149 ALA HB2 H N N 150 ALA HB3 H N N 151 ALA HXT H N N 152 ARG N N N N 153 ARG CA C N S 154 ARG C C N N 155 ARG O O N N 156 ARG CB C N N 157 ARG CG C N N 158 ARG CD C N N 159 ARG NE N N N 160 ARG CZ C N N 161 ARG NH1 N N N 162 ARG NH2 N N N 163 ARG OXT O N N 164 ARG H H N N 165 ARG H2 H N N 166 ARG HA H N N 167 ARG HB2 H N N 168 ARG HB3 H N N 169 ARG HG2 H N N 170 ARG HG3 H N N 171 ARG HD2 H N N 172 ARG HD3 H N N 173 ARG HE H N N 174 ARG HH11 H N N 175 ARG HH12 H N N 176 ARG HH21 H N N 177 ARG HH22 H N N 178 ARG HXT H N N 179 ASN N N N N 180 ASN CA C N S 181 ASN C C N N 182 ASN O O N N 183 ASN CB C N N 184 ASN CG C N N 185 ASN OD1 O N N 186 ASN ND2 N N N 187 ASN OXT O N N 188 ASN H H N N 189 ASN H2 H N N 190 ASN HA H N N 191 ASN HB2 H N N 192 ASN HB3 H N N 193 ASN HD21 H N N 194 ASN HD22 H N N 195 ASN HXT H N N 196 ASP N N N N 197 ASP CA C N S 198 ASP C C N N 199 ASP O O N N 200 ASP CB C N N 201 ASP CG C N N 202 ASP OD1 O N N 203 ASP OD2 O N N 204 ASP OXT O N N 205 ASP H H N N 206 ASP H2 H N N 207 ASP HA H N N 208 ASP HB2 H N N 209 ASP HB3 H N N 210 ASP HD2 H N N 211 ASP HXT H N N 212 CA CA CA N N 213 CFZ P P N N 214 CFZ N1 N N N 215 CFZ C2 C N N 216 CFZ O2 O N N 217 CFZ N3 N N N 218 CFZ C4 C N N 219 CFZ N4 N N N 220 CFZ C5 C N N 221 CFZ C6 C N N 222 CFZ "C1'" C N R 223 CFZ O1P O N N 224 CFZ "C2'" C N R 225 CFZ "F2'" F N N 226 CFZ O2P O N N 227 CFZ "C3'" C N R 228 CFZ "O3'" O N N 229 CFZ O3P O N N 230 CFZ "C4'" C N R 231 CFZ "O4'" O N N 232 CFZ "C5'" C N N 233 CFZ "O5'" O N N 234 CFZ HN4 H N N 235 CFZ HN4A H N N 236 CFZ H5 H N N 237 CFZ H6 H N N 238 CFZ "H1'" H N N 239 CFZ HO1P H N N 240 CFZ "H2'" H N N 241 CFZ "H3'" H N N 242 CFZ "HO3'" H N N 243 CFZ HO3P H N N 244 CFZ "H4'" H N N 245 CFZ "H5'" H N N 246 CFZ "H5'A" H N N 247 CYS N N N N 248 CYS CA C N R 249 CYS C C N N 250 CYS O O N N 251 CYS CB C N N 252 CYS SG S N N 253 CYS OXT O N N 254 CYS H H N N 255 CYS H2 H N N 256 CYS HA H N N 257 CYS HB2 H N N 258 CYS HB3 H N N 259 CYS HG H N N 260 CYS HXT H N N 261 EDO C1 C N N 262 EDO O1 O N N 263 EDO C2 C N N 264 EDO O2 O N N 265 EDO H11 H N N 266 EDO H12 H N N 267 EDO HO1 H N N 268 EDO H21 H N N 269 EDO H22 H N N 270 EDO HO2 H N N 271 G OP3 O N N 272 G P P N N 273 G OP1 O N N 274 G OP2 O N N 275 G "O5'" O N N 276 G "C5'" C N N 277 G "C4'" C N R 278 G "O4'" O N N 279 G "C3'" C N S 280 G "O3'" O N N 281 G "C2'" C N R 282 G "O2'" O N N 283 G "C1'" C N R 284 G N9 N Y N 285 G C8 C Y N 286 G N7 N Y N 287 G C5 C Y N 288 G C6 C N N 289 G O6 O N N 290 G N1 N N N 291 G C2 C N N 292 G N2 N N N 293 G N3 N N N 294 G C4 C Y N 295 G HOP3 H N N 296 G HOP2 H N N 297 G "H5'" H N N 298 G "H5''" H N N 299 G "H4'" H N N 300 G "H3'" H N N 301 G "HO3'" H N N 302 G "H2'" H N N 303 G "HO2'" H N N 304 G "H1'" H N N 305 G H8 H N N 306 G H1 H N N 307 G H21 H N N 308 G H22 H N N 309 GLN N N N N 310 GLN CA C N S 311 GLN C C N N 312 GLN O O N N 313 GLN CB C N N 314 GLN CG C N N 315 GLN CD C N N 316 GLN OE1 O N N 317 GLN NE2 N N N 318 GLN OXT O N N 319 GLN H H N N 320 GLN H2 H N N 321 GLN HA H N N 322 GLN HB2 H N N 323 GLN HB3 H N N 324 GLN HG2 H N N 325 GLN HG3 H N N 326 GLN HE21 H N N 327 GLN HE22 H N N 328 GLN HXT H N N 329 GLU N N N N 330 GLU CA C N S 331 GLU C C N N 332 GLU O O N N 333 GLU CB C N N 334 GLU CG C N N 335 GLU CD C N N 336 GLU OE1 O N N 337 GLU OE2 O N N 338 GLU OXT O N N 339 GLU H H N N 340 GLU H2 H N N 341 GLU HA H N N 342 GLU HB2 H N N 343 GLU HB3 H N N 344 GLU HG2 H N N 345 GLU HG3 H N N 346 GLU HE2 H N N 347 GLU HXT H N N 348 GLY N N N N 349 GLY CA C N N 350 GLY C C N N 351 GLY O O N N 352 GLY OXT O N N 353 GLY H H N N 354 GLY H2 H N N 355 GLY HA2 H N N 356 GLY HA3 H N N 357 GLY HXT H N N 358 GOL C1 C N N 359 GOL O1 O N N 360 GOL C2 C N N 361 GOL O2 O N N 362 GOL C3 C N N 363 GOL O3 O N N 364 GOL H11 H N N 365 GOL H12 H N N 366 GOL HO1 H N N 367 GOL H2 H N N 368 GOL HO2 H N N 369 GOL H31 H N N 370 GOL H32 H N N 371 GOL HO3 H N N 372 HIS N N N N 373 HIS CA C N S 374 HIS C C N N 375 HIS O O N N 376 HIS CB C N N 377 HIS CG C Y N 378 HIS ND1 N Y N 379 HIS CD2 C Y N 380 HIS CE1 C Y N 381 HIS NE2 N Y N 382 HIS OXT O N N 383 HIS H H N N 384 HIS H2 H N N 385 HIS HA H N N 386 HIS HB2 H N N 387 HIS HB3 H N N 388 HIS HD1 H N N 389 HIS HD2 H N N 390 HIS HE1 H N N 391 HIS HE2 H N N 392 HIS HXT H N N 393 HOH O O N N 394 HOH H1 H N N 395 HOH H2 H N N 396 ILE N N N N 397 ILE CA C N S 398 ILE C C N N 399 ILE O O N N 400 ILE CB C N S 401 ILE CG1 C N N 402 ILE CG2 C N N 403 ILE CD1 C N N 404 ILE OXT O N N 405 ILE H H N N 406 ILE H2 H N N 407 ILE HA H N N 408 ILE HB H N N 409 ILE HG12 H N N 410 ILE HG13 H N N 411 ILE HG21 H N N 412 ILE HG22 H N N 413 ILE HG23 H N N 414 ILE HD11 H N N 415 ILE HD12 H N N 416 ILE HD13 H N N 417 ILE HXT H N N 418 LEU N N N N 419 LEU CA C N S 420 LEU C C N N 421 LEU O O N N 422 LEU CB C N N 423 LEU CG C N N 424 LEU CD1 C N N 425 LEU CD2 C N N 426 LEU OXT O N N 427 LEU H H N N 428 LEU H2 H N N 429 LEU HA H N N 430 LEU HB2 H N N 431 LEU HB3 H N N 432 LEU HG H N N 433 LEU HD11 H N N 434 LEU HD12 H N N 435 LEU HD13 H N N 436 LEU HD21 H N N 437 LEU HD22 H N N 438 LEU HD23 H N N 439 LEU HXT H N N 440 LYS N N N N 441 LYS CA C N S 442 LYS C C N N 443 LYS O O N N 444 LYS CB C N N 445 LYS CG C N N 446 LYS CD C N N 447 LYS CE C N N 448 LYS NZ N N N 449 LYS OXT O N N 450 LYS H H N N 451 LYS H2 H N N 452 LYS HA H N N 453 LYS HB2 H N N 454 LYS HB3 H N N 455 LYS HG2 H N N 456 LYS HG3 H N N 457 LYS HD2 H N N 458 LYS HD3 H N N 459 LYS HE2 H N N 460 LYS HE3 H N N 461 LYS HZ1 H N N 462 LYS HZ2 H N N 463 LYS HZ3 H N N 464 LYS HXT H N N 465 MET N N N N 466 MET CA C N S 467 MET C C N N 468 MET O O N N 469 MET CB C N N 470 MET CG C N N 471 MET SD S N N 472 MET CE C N N 473 MET OXT O N N 474 MET H H N N 475 MET H2 H N N 476 MET HA H N N 477 MET HB2 H N N 478 MET HB3 H N N 479 MET HG2 H N N 480 MET HG3 H N N 481 MET HE1 H N N 482 MET HE2 H N N 483 MET HE3 H N N 484 MET HXT H N N 485 MG MG MG N N 486 MRD C1 C N N 487 MRD C2 C N N 488 MRD O2 O N N 489 MRD CM C N N 490 MRD C3 C N N 491 MRD C4 C N R 492 MRD O4 O N N 493 MRD C5 C N N 494 MRD H1C1 H N N 495 MRD H1C2 H N N 496 MRD H1C3 H N N 497 MRD H2 H N N 498 MRD HMC1 H N N 499 MRD HMC2 H N N 500 MRD HMC3 H N N 501 MRD H3C1 H N N 502 MRD H3C2 H N N 503 MRD H4 H N N 504 MRD HA H N N 505 MRD H5C1 H N N 506 MRD H5C2 H N N 507 MRD H5C3 H N N 508 NAG C1 C N R 509 NAG C2 C N R 510 NAG C3 C N R 511 NAG C4 C N S 512 NAG C5 C N R 513 NAG C6 C N N 514 NAG C7 C N N 515 NAG C8 C N N 516 NAG N2 N N N 517 NAG O1 O N N 518 NAG O3 O N N 519 NAG O4 O N N 520 NAG O5 O N N 521 NAG O6 O N N 522 NAG O7 O N N 523 NAG H1 H N N 524 NAG H2 H N N 525 NAG H3 H N N 526 NAG H4 H N N 527 NAG H5 H N N 528 NAG H61 H N N 529 NAG H62 H N N 530 NAG H81 H N N 531 NAG H82 H N N 532 NAG H83 H N N 533 NAG HN2 H N N 534 NAG HO1 H N N 535 NAG HO3 H N N 536 NAG HO4 H N N 537 NAG HO6 H N N 538 PHE N N N N 539 PHE CA C N S 540 PHE C C N N 541 PHE O O N N 542 PHE CB C N N 543 PHE CG C Y N 544 PHE CD1 C Y N 545 PHE CD2 C Y N 546 PHE CE1 C Y N 547 PHE CE2 C Y N 548 PHE CZ C Y N 549 PHE OXT O N N 550 PHE H H N N 551 PHE H2 H N N 552 PHE HA H N N 553 PHE HB2 H N N 554 PHE HB3 H N N 555 PHE HD1 H N N 556 PHE HD2 H N N 557 PHE HE1 H N N 558 PHE HE2 H N N 559 PHE HZ H N N 560 PHE HXT H N N 561 PRO N N N N 562 PRO CA C N S 563 PRO C C N N 564 PRO O O N N 565 PRO CB C N N 566 PRO CG C N N 567 PRO CD C N N 568 PRO OXT O N N 569 PRO H H N N 570 PRO HA H N N 571 PRO HB2 H N N 572 PRO HB3 H N N 573 PRO HG2 H N N 574 PRO HG3 H N N 575 PRO HD2 H N N 576 PRO HD3 H N N 577 PRO HXT H N N 578 SER N N N N 579 SER CA C N S 580 SER C C N N 581 SER O O N N 582 SER CB C N N 583 SER OG O N N 584 SER OXT O N N 585 SER H H N N 586 SER H2 H N N 587 SER HA H N N 588 SER HB2 H N N 589 SER HB3 H N N 590 SER HG H N N 591 SER HXT H N N 592 THR N N N N 593 THR CA C N S 594 THR C C N N 595 THR O O N N 596 THR CB C N R 597 THR OG1 O N N 598 THR CG2 C N N 599 THR OXT O N N 600 THR H H N N 601 THR H2 H N N 602 THR HA H N N 603 THR HB H N N 604 THR HG1 H N N 605 THR HG21 H N N 606 THR HG22 H N N 607 THR HG23 H N N 608 THR HXT H N N 609 TRP N N N N 610 TRP CA C N S 611 TRP C C N N 612 TRP O O N N 613 TRP CB C N N 614 TRP CG C Y N 615 TRP CD1 C Y N 616 TRP CD2 C Y N 617 TRP NE1 N Y N 618 TRP CE2 C Y N 619 TRP CE3 C Y N 620 TRP CZ2 C Y N 621 TRP CZ3 C Y N 622 TRP CH2 C Y N 623 TRP OXT O N N 624 TRP H H N N 625 TRP H2 H N N 626 TRP HA H N N 627 TRP HB2 H N N 628 TRP HB3 H N N 629 TRP HD1 H N N 630 TRP HE1 H N N 631 TRP HE3 H N N 632 TRP HZ2 H N N 633 TRP HZ3 H N N 634 TRP HH2 H N N 635 TRP HXT H N N 636 TYR N N N N 637 TYR CA C N S 638 TYR C C N N 639 TYR O O N N 640 TYR CB C N N 641 TYR CG C Y N 642 TYR CD1 C Y N 643 TYR CD2 C Y N 644 TYR CE1 C Y N 645 TYR CE2 C Y N 646 TYR CZ C Y N 647 TYR OH O N N 648 TYR OXT O N N 649 TYR H H N N 650 TYR H2 H N N 651 TYR HA H N N 652 TYR HB2 H N N 653 TYR HB3 H N N 654 TYR HD1 H N N 655 TYR HD2 H N N 656 TYR HE1 H N N 657 TYR HE2 H N N 658 TYR HH H N N 659 TYR HXT H N N 660 UFT OP3 O N N 661 UFT P P N N 662 UFT OP1 O N N 663 UFT OP2 O N N 664 UFT "O5'" O N N 665 UFT N1 N N N 666 UFT C6 C N N 667 UFT C2 C N N 668 UFT O2 O N N 669 UFT N3 N N N 670 UFT C4 C N N 671 UFT O4 O N N 672 UFT C5 C N N 673 UFT "F2'" F N N 674 UFT "C2'" C N R 675 UFT "C5'" C N N 676 UFT "C4'" C N R 677 UFT "O4'" O N N 678 UFT "C1'" C N R 679 UFT "C3'" C N R 680 UFT "O3'" O N N 681 UFT HOP3 H N N 682 UFT HOP2 H N N 683 UFT H6 H N N 684 UFT H5 H N N 685 UFT "H2'" H N N 686 UFT "H5'" H N N 687 UFT "H5'A" H N N 688 UFT "H4'" H N N 689 UFT "H1'" H N N 690 UFT "H3'" H N N 691 UFT "HO3'" H N N 692 UFT HN3 H N N 693 UMS OP3 O N N 694 UMS P P N N 695 UMS OP1 O N N 696 UMS OP2 O N N 697 UMS "O5'" O N N 698 UMS "C5'" C N N 699 UMS "C4'" C N R 700 UMS "O4'" O N N 701 UMS "C3'" C N R 702 UMS "O3'" O N N 703 UMS "C2'" C N R 704 UMS "SE2'" SE N N 705 UMS "C1'" C N R 706 UMS "CA'" C N N 707 UMS N1 N N N 708 UMS C2 C N N 709 UMS O2 O N N 710 UMS N3 N N N 711 UMS C4 C N N 712 UMS O4 O N N 713 UMS C5 C N N 714 UMS C6 C N N 715 UMS HOP3 H N N 716 UMS HOP2 H N N 717 UMS "H5'" H N N 718 UMS "H5'2" H N N 719 UMS "H4'" H N N 720 UMS "H3'" H N N 721 UMS "HO3'" H N N 722 UMS "H2'" H N N 723 UMS "H1'" H N N 724 UMS "HA'" H N N 725 UMS "HA'2" H N N 726 UMS "HA'3" H N N 727 UMS H3 H N N 728 UMS H5 H N N 729 UMS H6 H N N 730 VAL N N N N 731 VAL CA C N S 732 VAL C C N N 733 VAL O O N N 734 VAL CB C N N 735 VAL CG1 C N N 736 VAL CG2 C N N 737 VAL OXT O N N 738 VAL H H N N 739 VAL H2 H N N 740 VAL HA H N N 741 VAL HB H N N 742 VAL HG11 H N N 743 VAL HG12 H N N 744 VAL HG13 H N N 745 VAL HG21 H N N 746 VAL HG22 H N N 747 VAL HG23 H N N 748 VAL HXT H N N 749 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0G6 N CA sing N N 1 0G6 N H sing N N 2 0G6 N H2 sing N N 3 0G6 CA C sing N N 4 0G6 CA CB sing N N 5 0G6 CA HA sing N N 6 0G6 C O doub N N 7 0G6 C N1 sing N N 8 0G6 CB CG sing N N 9 0G6 CB HB2 sing N N 10 0G6 CB HB3 sing N N 11 0G6 CG CD1 doub Y N 12 0G6 CG CD2 sing Y N 13 0G6 CD1 CE1 sing Y N 14 0G6 CD1 HD1 sing N N 15 0G6 CD2 CE2 doub Y N 16 0G6 CD2 HD2 sing N N 17 0G6 CE1 CZ doub Y N 18 0G6 CE1 HE1 sing N N 19 0G6 CE2 CZ sing Y N 20 0G6 CE2 HE2 sing N N 21 0G6 CZ HZ sing N N 22 0G6 N1 CA1 sing N N 23 0G6 N1 CD sing N N 24 0G6 CA1 C1 sing N N 25 0G6 CA1 CB1 sing N N 26 0G6 CA1 HA1 sing N N 27 0G6 C1 O1 doub N N 28 0G6 C1 N2 sing N N 29 0G6 CB1 CG1 sing N N 30 0G6 CB1 HB21 sing N N 31 0G6 CB1 HB31 sing N N 32 0G6 CG1 CD sing N N 33 0G6 CG1 HG2 sing N N 34 0G6 CG1 HG3 sing N N 35 0G6 CD HD21 sing N N 36 0G6 CD HD3 sing N N 37 0G6 N2 CA2 sing N N 38 0G6 N2 H1 sing N N 39 0G6 CA2 C2 sing N N 40 0G6 CA2 CB2 sing N N 41 0G6 CA2 HA2 sing N N 42 0G6 C2 O2 sing N N 43 0G6 C2 C3 sing N N 44 0G6 CB2 CG2 sing N N 45 0G6 CB2 HB22 sing N N 46 0G6 CB2 HB32 sing N N 47 0G6 CG2 CD3 sing N N 48 0G6 CG2 HG21 sing N N 49 0G6 CG2 HG31 sing N N 50 0G6 CD3 NE sing N N 51 0G6 CD3 HD22 sing N N 52 0G6 CD3 HD31 sing N N 53 0G6 NE CZ1 sing N N 54 0G6 NE HE sing N N 55 0G6 CZ1 NH1 sing N N 56 0G6 CZ1 NH2 doub N N 57 0G6 NH1 HH11 sing N N 58 0G6 NH1 HH12 sing N N 59 0G6 NH2 HH21 sing N N 60 0G6 NH2 HH22 sing N N 61 0G6 C3 H11 sing N N 62 0G6 C3 H21 sing N N 63 0G6 CL C3 sing N N 64 0G6 C2 H33 sing N N 65 0G6 O2 H34 sing N N 66 A OP3 P sing N N 67 A OP3 HOP3 sing N N 68 A P OP1 doub N N 69 A P OP2 sing N N 70 A P "O5'" sing N N 71 A OP2 HOP2 sing N N 72 A "O5'" "C5'" sing N N 73 A "C5'" "C4'" sing N N 74 A "C5'" "H5'" sing N N 75 A "C5'" "H5''" sing N N 76 A "C4'" "O4'" sing N N 77 A "C4'" "C3'" sing N N 78 A "C4'" "H4'" sing N N 79 A "O4'" "C1'" sing N N 80 A "C3'" "O3'" sing N N 81 A "C3'" "C2'" sing N N 82 A "C3'" "H3'" sing N N 83 A "O3'" "HO3'" sing N N 84 A "C2'" "O2'" sing N N 85 A "C2'" "C1'" sing N N 86 A "C2'" "H2'" sing N N 87 A "O2'" "HO2'" sing N N 88 A "C1'" N9 sing N N 89 A "C1'" "H1'" sing N N 90 A N9 C8 sing Y N 91 A N9 C4 sing Y N 92 A C8 N7 doub Y N 93 A C8 H8 sing N N 94 A N7 C5 sing Y N 95 A C5 C6 sing Y N 96 A C5 C4 doub Y N 97 A C6 N6 sing N N 98 A C6 N1 doub Y N 99 A N6 H61 sing N N 100 A N6 H62 sing N N 101 A N1 C2 sing Y N 102 A C2 N3 doub Y N 103 A C2 H2 sing N N 104 A N3 C4 sing Y N 105 ADS P O1P doub N N 106 ADS P S2P sing N N 107 ADS P S3P sing N N 108 ADS P "O5'" sing N N 109 ADS S2P HSP2 sing N N 110 ADS S3P HSP3 sing N N 111 ADS "O5'" "C5'" sing N N 112 ADS "C5'" "C4'" sing N N 113 ADS "C5'" "H5'1" sing N N 114 ADS "C5'" "H5'2" sing N N 115 ADS "C4'" "O4'" sing N N 116 ADS "C4'" "C3'" sing N N 117 ADS "C4'" "H4'" sing N N 118 ADS "O4'" "C1'" sing N N 119 ADS "C3'" "O3'" sing N N 120 ADS "C3'" "C2'" sing N N 121 ADS "C3'" "H3'" sing N N 122 ADS "O3'" "HO3'" sing N N 123 ADS "C2'" "O2'" sing N N 124 ADS "C2'" "C1'" sing N N 125 ADS "C2'" "H2'" sing N N 126 ADS "O2'" "HO2'" sing N N 127 ADS "C1'" N9 sing N N 128 ADS "C1'" "H1'" sing N N 129 ADS N9 C8 sing Y N 130 ADS N9 C4 sing Y N 131 ADS C8 N7 doub Y N 132 ADS C8 H8 sing N N 133 ADS N7 C5 sing Y N 134 ADS C5 C6 sing Y N 135 ADS C5 C4 doub Y N 136 ADS C6 N6 sing N N 137 ADS C6 N1 doub Y N 138 ADS N6 HN61 sing N N 139 ADS N6 HN62 sing N N 140 ADS N1 C2 sing Y N 141 ADS C2 N3 doub Y N 142 ADS C2 H2 sing N N 143 ADS N3 C4 sing Y N 144 ALA N CA sing N N 145 ALA N H sing N N 146 ALA N H2 sing N N 147 ALA CA C sing N N 148 ALA CA CB sing N N 149 ALA CA HA sing N N 150 ALA C O doub N N 151 ALA C OXT sing N N 152 ALA CB HB1 sing N N 153 ALA CB HB2 sing N N 154 ALA CB HB3 sing N N 155 ALA OXT HXT sing N N 156 ARG N CA sing N N 157 ARG N H sing N N 158 ARG N H2 sing N N 159 ARG CA C sing N N 160 ARG CA CB sing N N 161 ARG CA HA sing N N 162 ARG C O doub N N 163 ARG C OXT sing N N 164 ARG CB CG sing N N 165 ARG CB HB2 sing N N 166 ARG CB HB3 sing N N 167 ARG CG CD sing N N 168 ARG CG HG2 sing N N 169 ARG CG HG3 sing N N 170 ARG CD NE sing N N 171 ARG CD HD2 sing N N 172 ARG CD HD3 sing N N 173 ARG NE CZ sing N N 174 ARG NE HE sing N N 175 ARG CZ NH1 sing N N 176 ARG CZ NH2 doub N N 177 ARG NH1 HH11 sing N N 178 ARG NH1 HH12 sing N N 179 ARG NH2 HH21 sing N N 180 ARG NH2 HH22 sing N N 181 ARG OXT HXT sing N N 182 ASN N CA sing N N 183 ASN N H sing N N 184 ASN N H2 sing N N 185 ASN CA C sing N N 186 ASN CA CB sing N N 187 ASN CA HA sing N N 188 ASN C O doub N N 189 ASN C OXT sing N N 190 ASN CB CG sing N N 191 ASN CB HB2 sing N N 192 ASN CB HB3 sing N N 193 ASN CG OD1 doub N N 194 ASN CG ND2 sing N N 195 ASN ND2 HD21 sing N N 196 ASN ND2 HD22 sing N N 197 ASN OXT HXT sing N N 198 ASP N CA sing N N 199 ASP N H sing N N 200 ASP N H2 sing N N 201 ASP CA C sing N N 202 ASP CA CB sing N N 203 ASP CA HA sing N N 204 ASP C O doub N N 205 ASP C OXT sing N N 206 ASP CB CG sing N N 207 ASP CB HB2 sing N N 208 ASP CB HB3 sing N N 209 ASP CG OD1 doub N N 210 ASP CG OD2 sing N N 211 ASP OD2 HD2 sing N N 212 ASP OXT HXT sing N N 213 CFZ O2P P doub N N 214 CFZ P "O5'" sing N N 215 CFZ P O1P sing N N 216 CFZ P O3P sing N N 217 CFZ C6 N1 sing N N 218 CFZ C2 N1 sing N N 219 CFZ N1 "C1'" sing N N 220 CFZ N3 C2 sing N N 221 CFZ C2 O2 doub N N 222 CFZ C4 N3 doub N N 223 CFZ N4 C4 sing N N 224 CFZ C4 C5 sing N N 225 CFZ N4 HN4 sing N N 226 CFZ N4 HN4A sing N N 227 CFZ C5 C6 doub N N 228 CFZ C5 H5 sing N N 229 CFZ C6 H6 sing N N 230 CFZ "C2'" "C1'" sing N N 231 CFZ "C1'" "O4'" sing N N 232 CFZ "C1'" "H1'" sing N N 233 CFZ O1P HO1P sing N N 234 CFZ "C3'" "C2'" sing N N 235 CFZ "C2'" "F2'" sing N N 236 CFZ "C2'" "H2'" sing N N 237 CFZ "C3'" "O3'" sing N N 238 CFZ "C3'" "C4'" sing N N 239 CFZ "C3'" "H3'" sing N N 240 CFZ "O3'" "HO3'" sing N N 241 CFZ O3P HO3P sing N N 242 CFZ "O4'" "C4'" sing N N 243 CFZ "C5'" "C4'" sing N N 244 CFZ "C4'" "H4'" sing N N 245 CFZ "O5'" "C5'" sing N N 246 CFZ "C5'" "H5'" sing N N 247 CFZ "C5'" "H5'A" sing N N 248 CYS N CA sing N N 249 CYS N H sing N N 250 CYS N H2 sing N N 251 CYS CA C sing N N 252 CYS CA CB sing N N 253 CYS CA HA sing N N 254 CYS C O doub N N 255 CYS C OXT sing N N 256 CYS CB SG sing N N 257 CYS CB HB2 sing N N 258 CYS CB HB3 sing N N 259 CYS SG HG sing N N 260 CYS OXT HXT sing N N 261 EDO C1 O1 sing N N 262 EDO C1 C2 sing N N 263 EDO C1 H11 sing N N 264 EDO C1 H12 sing N N 265 EDO O1 HO1 sing N N 266 EDO C2 O2 sing N N 267 EDO C2 H21 sing N N 268 EDO C2 H22 sing N N 269 EDO O2 HO2 sing N N 270 G OP3 P sing N N 271 G OP3 HOP3 sing N N 272 G P OP1 doub N N 273 G P OP2 sing N N 274 G P "O5'" sing N N 275 G OP2 HOP2 sing N N 276 G "O5'" "C5'" sing N N 277 G "C5'" "C4'" sing N N 278 G "C5'" "H5'" sing N N 279 G "C5'" "H5''" sing N N 280 G "C4'" "O4'" sing N N 281 G "C4'" "C3'" sing N N 282 G "C4'" "H4'" sing N N 283 G "O4'" "C1'" sing N N 284 G "C3'" "O3'" sing N N 285 G "C3'" "C2'" sing N N 286 G "C3'" "H3'" sing N N 287 G "O3'" "HO3'" sing N N 288 G "C2'" "O2'" sing N N 289 G "C2'" "C1'" sing N N 290 G "C2'" "H2'" sing N N 291 G "O2'" "HO2'" sing N N 292 G "C1'" N9 sing N N 293 G "C1'" "H1'" sing N N 294 G N9 C8 sing Y N 295 G N9 C4 sing Y N 296 G C8 N7 doub Y N 297 G C8 H8 sing N N 298 G N7 C5 sing Y N 299 G C5 C6 sing N N 300 G C5 C4 doub Y N 301 G C6 O6 doub N N 302 G C6 N1 sing N N 303 G N1 C2 sing N N 304 G N1 H1 sing N N 305 G C2 N2 sing N N 306 G C2 N3 doub N N 307 G N2 H21 sing N N 308 G N2 H22 sing N N 309 G N3 C4 sing N N 310 GLN N CA sing N N 311 GLN N H sing N N 312 GLN N H2 sing N N 313 GLN CA C sing N N 314 GLN CA CB sing N N 315 GLN CA HA sing N N 316 GLN C O doub N N 317 GLN C OXT sing N N 318 GLN CB CG sing N N 319 GLN CB HB2 sing N N 320 GLN CB HB3 sing N N 321 GLN CG CD sing N N 322 GLN CG HG2 sing N N 323 GLN CG HG3 sing N N 324 GLN CD OE1 doub N N 325 GLN CD NE2 sing N N 326 GLN NE2 HE21 sing N N 327 GLN NE2 HE22 sing N N 328 GLN OXT HXT sing N N 329 GLU N CA sing N N 330 GLU N H sing N N 331 GLU N H2 sing N N 332 GLU CA C sing N N 333 GLU CA CB sing N N 334 GLU CA HA sing N N 335 GLU C O doub N N 336 GLU C OXT sing N N 337 GLU CB CG sing N N 338 GLU CB HB2 sing N N 339 GLU CB HB3 sing N N 340 GLU CG CD sing N N 341 GLU CG HG2 sing N N 342 GLU CG HG3 sing N N 343 GLU CD OE1 doub N N 344 GLU CD OE2 sing N N 345 GLU OE2 HE2 sing N N 346 GLU OXT HXT sing N N 347 GLY N CA sing N N 348 GLY N H sing N N 349 GLY N H2 sing N N 350 GLY CA C sing N N 351 GLY CA HA2 sing N N 352 GLY CA HA3 sing N N 353 GLY C O doub N N 354 GLY C OXT sing N N 355 GLY OXT HXT sing N N 356 GOL C1 O1 sing N N 357 GOL C1 C2 sing N N 358 GOL C1 H11 sing N N 359 GOL C1 H12 sing N N 360 GOL O1 HO1 sing N N 361 GOL C2 O2 sing N N 362 GOL C2 C3 sing N N 363 GOL C2 H2 sing N N 364 GOL O2 HO2 sing N N 365 GOL C3 O3 sing N N 366 GOL C3 H31 sing N N 367 GOL C3 H32 sing N N 368 GOL O3 HO3 sing N N 369 HIS N CA sing N N 370 HIS N H sing N N 371 HIS N H2 sing N N 372 HIS CA C sing N N 373 HIS CA CB sing N N 374 HIS CA HA sing N N 375 HIS C O doub N N 376 HIS C OXT sing N N 377 HIS CB CG sing N N 378 HIS CB HB2 sing N N 379 HIS CB HB3 sing N N 380 HIS CG ND1 sing Y N 381 HIS CG CD2 doub Y N 382 HIS ND1 CE1 doub Y N 383 HIS ND1 HD1 sing N N 384 HIS CD2 NE2 sing Y N 385 HIS CD2 HD2 sing N N 386 HIS CE1 NE2 sing Y N 387 HIS CE1 HE1 sing N N 388 HIS NE2 HE2 sing N N 389 HIS OXT HXT sing N N 390 HOH O H1 sing N N 391 HOH O H2 sing N N 392 ILE N CA sing N N 393 ILE N H sing N N 394 ILE N H2 sing N N 395 ILE CA C sing N N 396 ILE CA CB sing N N 397 ILE CA HA sing N N 398 ILE C O doub N N 399 ILE C OXT sing N N 400 ILE CB CG1 sing N N 401 ILE CB CG2 sing N N 402 ILE CB HB sing N N 403 ILE CG1 CD1 sing N N 404 ILE CG1 HG12 sing N N 405 ILE CG1 HG13 sing N N 406 ILE CG2 HG21 sing N N 407 ILE CG2 HG22 sing N N 408 ILE CG2 HG23 sing N N 409 ILE CD1 HD11 sing N N 410 ILE CD1 HD12 sing N N 411 ILE CD1 HD13 sing N N 412 ILE OXT HXT sing N N 413 LEU N CA sing N N 414 LEU N H sing N N 415 LEU N H2 sing N N 416 LEU CA C sing N N 417 LEU CA CB sing N N 418 LEU CA HA sing N N 419 LEU C O doub N N 420 LEU C OXT sing N N 421 LEU CB CG sing N N 422 LEU CB HB2 sing N N 423 LEU CB HB3 sing N N 424 LEU CG CD1 sing N N 425 LEU CG CD2 sing N N 426 LEU CG HG sing N N 427 LEU CD1 HD11 sing N N 428 LEU CD1 HD12 sing N N 429 LEU CD1 HD13 sing N N 430 LEU CD2 HD21 sing N N 431 LEU CD2 HD22 sing N N 432 LEU CD2 HD23 sing N N 433 LEU OXT HXT sing N N 434 LYS N CA sing N N 435 LYS N H sing N N 436 LYS N H2 sing N N 437 LYS CA C sing N N 438 LYS CA CB sing N N 439 LYS CA HA sing N N 440 LYS C O doub N N 441 LYS C OXT sing N N 442 LYS CB CG sing N N 443 LYS CB HB2 sing N N 444 LYS CB HB3 sing N N 445 LYS CG CD sing N N 446 LYS CG HG2 sing N N 447 LYS CG HG3 sing N N 448 LYS CD CE sing N N 449 LYS CD HD2 sing N N 450 LYS CD HD3 sing N N 451 LYS CE NZ sing N N 452 LYS CE HE2 sing N N 453 LYS CE HE3 sing N N 454 LYS NZ HZ1 sing N N 455 LYS NZ HZ2 sing N N 456 LYS NZ HZ3 sing N N 457 LYS OXT HXT sing N N 458 MET N CA sing N N 459 MET N H sing N N 460 MET N H2 sing N N 461 MET CA C sing N N 462 MET CA CB sing N N 463 MET CA HA sing N N 464 MET C O doub N N 465 MET C OXT sing N N 466 MET CB CG sing N N 467 MET CB HB2 sing N N 468 MET CB HB3 sing N N 469 MET CG SD sing N N 470 MET CG HG2 sing N N 471 MET CG HG3 sing N N 472 MET SD CE sing N N 473 MET CE HE1 sing N N 474 MET CE HE2 sing N N 475 MET CE HE3 sing N N 476 MET OXT HXT sing N N 477 MRD C1 C2 sing N N 478 MRD C1 H1C1 sing N N 479 MRD C1 H1C2 sing N N 480 MRD C1 H1C3 sing N N 481 MRD C2 O2 sing N N 482 MRD C2 CM sing N N 483 MRD C2 C3 sing N N 484 MRD O2 H2 sing N N 485 MRD CM HMC1 sing N N 486 MRD CM HMC2 sing N N 487 MRD CM HMC3 sing N N 488 MRD C3 C4 sing N N 489 MRD C3 H3C1 sing N N 490 MRD C3 H3C2 sing N N 491 MRD C4 O4 sing N N 492 MRD C4 C5 sing N N 493 MRD C4 H4 sing N N 494 MRD O4 HA sing N N 495 MRD C5 H5C1 sing N N 496 MRD C5 H5C2 sing N N 497 MRD C5 H5C3 sing N N 498 NAG C1 C2 sing N N 499 NAG C1 O1 sing N N 500 NAG C1 O5 sing N N 501 NAG C1 H1 sing N N 502 NAG C2 C3 sing N N 503 NAG C2 N2 sing N N 504 NAG C2 H2 sing N N 505 NAG C3 C4 sing N N 506 NAG C3 O3 sing N N 507 NAG C3 H3 sing N N 508 NAG C4 C5 sing N N 509 NAG C4 O4 sing N N 510 NAG C4 H4 sing N N 511 NAG C5 C6 sing N N 512 NAG C5 O5 sing N N 513 NAG C5 H5 sing N N 514 NAG C6 O6 sing N N 515 NAG C6 H61 sing N N 516 NAG C6 H62 sing N N 517 NAG C7 C8 sing N N 518 NAG C7 N2 sing N N 519 NAG C7 O7 doub N N 520 NAG C8 H81 sing N N 521 NAG C8 H82 sing N N 522 NAG C8 H83 sing N N 523 NAG N2 HN2 sing N N 524 NAG O1 HO1 sing N N 525 NAG O3 HO3 sing N N 526 NAG O4 HO4 sing N N 527 NAG O6 HO6 sing N N 528 PHE N CA sing N N 529 PHE N H sing N N 530 PHE N H2 sing N N 531 PHE CA C sing N N 532 PHE CA CB sing N N 533 PHE CA HA sing N N 534 PHE C O doub N N 535 PHE C OXT sing N N 536 PHE CB CG sing N N 537 PHE CB HB2 sing N N 538 PHE CB HB3 sing N N 539 PHE CG CD1 doub Y N 540 PHE CG CD2 sing Y N 541 PHE CD1 CE1 sing Y N 542 PHE CD1 HD1 sing N N 543 PHE CD2 CE2 doub Y N 544 PHE CD2 HD2 sing N N 545 PHE CE1 CZ doub Y N 546 PHE CE1 HE1 sing N N 547 PHE CE2 CZ sing Y N 548 PHE CE2 HE2 sing N N 549 PHE CZ HZ sing N N 550 PHE OXT HXT sing N N 551 PRO N CA sing N N 552 PRO N CD sing N N 553 PRO N H sing N N 554 PRO CA C sing N N 555 PRO CA CB sing N N 556 PRO CA HA sing N N 557 PRO C O doub N N 558 PRO C OXT sing N N 559 PRO CB CG sing N N 560 PRO CB HB2 sing N N 561 PRO CB HB3 sing N N 562 PRO CG CD sing N N 563 PRO CG HG2 sing N N 564 PRO CG HG3 sing N N 565 PRO CD HD2 sing N N 566 PRO CD HD3 sing N N 567 PRO OXT HXT sing N N 568 SER N CA sing N N 569 SER N H sing N N 570 SER N H2 sing N N 571 SER CA C sing N N 572 SER CA CB sing N N 573 SER CA HA sing N N 574 SER C O doub N N 575 SER C OXT sing N N 576 SER CB OG sing N N 577 SER CB HB2 sing N N 578 SER CB HB3 sing N N 579 SER OG HG sing N N 580 SER OXT HXT sing N N 581 THR N CA sing N N 582 THR N H sing N N 583 THR N H2 sing N N 584 THR CA C sing N N 585 THR CA CB sing N N 586 THR CA HA sing N N 587 THR C O doub N N 588 THR C OXT sing N N 589 THR CB OG1 sing N N 590 THR CB CG2 sing N N 591 THR CB HB sing N N 592 THR OG1 HG1 sing N N 593 THR CG2 HG21 sing N N 594 THR CG2 HG22 sing N N 595 THR CG2 HG23 sing N N 596 THR OXT HXT sing N N 597 TRP N CA sing N N 598 TRP N H sing N N 599 TRP N H2 sing N N 600 TRP CA C sing N N 601 TRP CA CB sing N N 602 TRP CA HA sing N N 603 TRP C O doub N N 604 TRP C OXT sing N N 605 TRP CB CG sing N N 606 TRP CB HB2 sing N N 607 TRP CB HB3 sing N N 608 TRP CG CD1 doub Y N 609 TRP CG CD2 sing Y N 610 TRP CD1 NE1 sing Y N 611 TRP CD1 HD1 sing N N 612 TRP CD2 CE2 doub Y N 613 TRP CD2 CE3 sing Y N 614 TRP NE1 CE2 sing Y N 615 TRP NE1 HE1 sing N N 616 TRP CE2 CZ2 sing Y N 617 TRP CE3 CZ3 doub Y N 618 TRP CE3 HE3 sing N N 619 TRP CZ2 CH2 doub Y N 620 TRP CZ2 HZ2 sing N N 621 TRP CZ3 CH2 sing Y N 622 TRP CZ3 HZ3 sing N N 623 TRP CH2 HH2 sing N N 624 TRP OXT HXT sing N N 625 TYR N CA sing N N 626 TYR N H sing N N 627 TYR N H2 sing N N 628 TYR CA C sing N N 629 TYR CA CB sing N N 630 TYR CA HA sing N N 631 TYR C O doub N N 632 TYR C OXT sing N N 633 TYR CB CG sing N N 634 TYR CB HB2 sing N N 635 TYR CB HB3 sing N N 636 TYR CG CD1 doub Y N 637 TYR CG CD2 sing Y N 638 TYR CD1 CE1 sing Y N 639 TYR CD1 HD1 sing N N 640 TYR CD2 CE2 doub Y N 641 TYR CD2 HD2 sing N N 642 TYR CE1 CZ doub Y N 643 TYR CE1 HE1 sing N N 644 TYR CE2 CZ sing Y N 645 TYR CE2 HE2 sing N N 646 TYR CZ OH sing N N 647 TYR OH HH sing N N 648 TYR OXT HXT sing N N 649 UFT OP3 P sing N N 650 UFT OP1 P doub N N 651 UFT P OP2 sing N N 652 UFT P "O5'" sing N N 653 UFT OP3 HOP3 sing N N 654 UFT OP2 HOP2 sing N N 655 UFT "O5'" "C5'" sing N N 656 UFT C6 N1 sing N N 657 UFT N1 C2 sing N N 658 UFT N1 "C1'" sing N N 659 UFT C5 C6 doub N N 660 UFT C6 H6 sing N N 661 UFT N3 C2 sing N N 662 UFT C2 O2 doub N N 663 UFT C4 N3 sing N N 664 UFT O4 C4 doub N N 665 UFT C5 C4 sing N N 666 UFT C5 H5 sing N N 667 UFT "C2'" "F2'" sing N N 668 UFT "C3'" "C2'" sing N N 669 UFT "C2'" "C1'" sing N N 670 UFT "C2'" "H2'" sing N N 671 UFT "C5'" "C4'" sing N N 672 UFT "C5'" "H5'" sing N N 673 UFT "C5'" "H5'A" sing N N 674 UFT "C3'" "C4'" sing N N 675 UFT "C4'" "O4'" sing N N 676 UFT "C4'" "H4'" sing N N 677 UFT "O4'" "C1'" sing N N 678 UFT "C1'" "H1'" sing N N 679 UFT "C3'" "O3'" sing N N 680 UFT "C3'" "H3'" sing N N 681 UFT "O3'" "HO3'" sing N N 682 UFT N3 HN3 sing N N 683 UMS OP3 P sing N N 684 UMS OP3 HOP3 sing N N 685 UMS P OP1 doub N N 686 UMS P OP2 sing N N 687 UMS P "O5'" sing N N 688 UMS OP2 HOP2 sing N N 689 UMS "O5'" "C5'" sing N N 690 UMS "C5'" "C4'" sing N N 691 UMS "C5'" "H5'" sing N N 692 UMS "C5'" "H5'2" sing N N 693 UMS "C4'" "O4'" sing N N 694 UMS "C4'" "C3'" sing N N 695 UMS "C4'" "H4'" sing N N 696 UMS "O4'" "C1'" sing N N 697 UMS "C3'" "O3'" sing N N 698 UMS "C3'" "C2'" sing N N 699 UMS "C3'" "H3'" sing N N 700 UMS "O3'" "HO3'" sing N N 701 UMS "C2'" "SE2'" sing N N 702 UMS "C2'" "C1'" sing N N 703 UMS "C2'" "H2'" sing N N 704 UMS "SE2'" "CA'" sing N N 705 UMS "C1'" N1 sing N N 706 UMS "C1'" "H1'" sing N N 707 UMS "CA'" "HA'" sing N N 708 UMS "CA'" "HA'2" sing N N 709 UMS "CA'" "HA'3" sing N N 710 UMS N1 C2 sing N N 711 UMS N1 C6 sing N N 712 UMS C2 O2 doub N N 713 UMS C2 N3 sing N N 714 UMS N3 C4 sing N N 715 UMS N3 H3 sing N N 716 UMS C4 O4 doub N N 717 UMS C4 C5 sing N N 718 UMS C5 C6 doub N N 719 UMS C5 H5 sing N N 720 UMS C6 H6 sing N N 721 VAL N CA sing N N 722 VAL N H sing N N 723 VAL N H2 sing N N 724 VAL CA C sing N N 725 VAL CA CB sing N N 726 VAL CA HA sing N N 727 VAL C O doub N N 728 VAL C OXT sing N N 729 VAL CB CG1 sing N N 730 VAL CB CG2 sing N N 731 VAL CB HB sing N N 732 VAL CG1 HG11 sing N N 733 VAL CG1 HG12 sing N N 734 VAL CG1 HG13 sing N N 735 VAL CG2 HG21 sing N N 736 VAL CG2 HG22 sing N N 737 VAL CG2 HG23 sing N N 738 VAL OXT HXT sing N N 739 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5DO4 'double helix' 5DO4 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C G 1 1_555 C CFZ 25 1_555 -0.409 -0.143 -0.011 -9.254 -9.525 -0.548 1 A_G1:CFZ25_A A 1 ? A 25 ? 19 1 1 C G 2 1_555 C CFZ 24 1_555 0.109 0.074 -0.070 -6.486 -8.104 3.406 2 A_G2:CFZ24_A A 2 ? A 24 ? 19 1 1 C G 3 1_555 C CFZ 23 1_555 -0.039 0.047 -0.058 -0.879 -4.070 1.982 3 A_G3:CFZ23_A A 3 ? A 23 ? 19 1 1 C A 5 1_555 C A 22 1_555 6.655 -0.825 0.412 -45.541 0.847 53.639 4 A_A5:A22_A A 5 ? A 22 ? ? 5 1 C A 8 1_555 C UMS 21 1_555 -0.038 -0.036 0.195 1.880 -13.435 -2.998 5 A_A8:UMS21_A A 8 ? A 21 ? 20 1 1 C A 9 1_555 C UFT 20 1_555 0.003 -0.105 0.391 5.779 -16.849 -1.730 6 A_A9:UFT20_A A 9 ? A 20 ? 20 1 1 C G 10 1_555 C CFZ 19 1_555 0.111 -0.062 -0.135 -2.935 -6.568 -2.495 7 A_G10:CFZ19_A A 10 ? A 19 ? 19 1 1 C CFZ 11 1_555 C G 16 1_555 0.026 -0.072 0.175 10.347 -5.949 1.856 8 A_CFZ11:G16_A A 11 ? A 16 ? 19 1 1 C UMS 12 1_555 C A 15 1_555 -3.373 0.596 0.751 16.118 -24.408 90.757 9 A_UMS12:A15_A A 12 ? A 15 ? ? 5 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C G 1 1_555 C CFZ 25 1_555 C G 2 1_555 C CFZ 24 1_555 0.196 -1.976 3.210 2.196 3.850 32.198 -4.170 0.015 2.967 6.900 -3.936 32.494 1 AA_G1G2:CFZ24CFZ25_AA A 1 ? A 25 ? A 2 ? A 24 ? 1 C G 2 1_555 C CFZ 24 1_555 C G 3 1_555 C CFZ 23 1_555 0.443 -2.257 3.027 0.942 6.225 26.062 -6.237 -0.750 2.445 13.554 -2.051 26.799 2 AA_G2G3:CFZ23CFZ24_AA A 2 ? A 24 ? A 3 ? A 23 ? 1 C G 3 1_555 C CFZ 23 1_555 C A 5 1_555 C A 22 1_555 1.063 -1.055 6.653 29.116 20.751 76.305 -1.862 0.696 6.289 16.001 -22.452 83.096 3 AA_G3A5:A22CFZ23_AA A 3 ? A 23 ? A 5 ? A 22 ? 1 C A 5 1_555 C A 22 1_555 C A 8 1_555 C UMS 21 1_555 -4.203 -1.203 2.255 17.317 9.142 2.631 -1.503 8.457 -3.938 38.480 -72.887 19.757 4 AA_A5A8:UMS21A22_AA A 5 ? A 22 ? A 8 ? A 21 ? 1 C A 8 1_555 C UMS 21 1_555 C A 9 1_555 C UFT 20 1_555 -0.397 -0.999 3.040 -2.416 -0.109 38.979 -1.483 0.322 3.061 -0.164 3.616 39.051 5 AA_A8A9:UFT20UMS21_AA A 8 ? A 21 ? A 9 ? A 20 ? 1 C A 9 1_555 C UFT 20 1_555 C G 10 1_555 C CFZ 19 1_555 1.341 -2.222 3.460 5.714 3.171 28.323 -5.168 -1.341 3.396 6.373 -11.484 29.052 6 AA_A9G10:CFZ19UFT20_AA A 9 ? A 20 ? A 10 ? A 19 ? 1 C G 10 1_555 C CFZ 19 1_555 C CFZ 11 1_555 C G 16 1_555 0.910 -1.718 3.135 -4.943 -2.864 34.263 -2.457 -2.252 3.106 -4.820 8.319 34.722 7 AA_G10CFZ11:G16CFZ19_AA A 10 ? A 19 ? A 11 ? A 16 ? 1 C CFZ 11 1_555 C G 16 1_555 C UMS 12 1_555 C A 15 1_555 3.737 -0.672 2.907 4.333 12.926 3.376 -15.313 -11.076 1.235 72.207 -24.205 14.042 8 AA_CFZ11UMS12:A15G16_AA A 11 ? A 16 ? A 12 ? A 15 ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 5 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 6 1,2-ETHANEDIOL EDO 7 GLYCEROL GOL 8 'CALCIUM ION' CA 9 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 10 'MAGNESIUM ION' MG 11 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DD2 _pdbx_initial_refinement_model.details ? #