HEADER DNA BINDING PROTEIN/DNA 14-OCT-15 5E8I TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF HUMAN TRANSCRIPTION TITLE 2 FACTOR FLI1 IN COMPLEX WITH A 10-MER DNA ACCGGAAGTG COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIEND LEUKEMIA INTEGRATION 1 TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, D, G, J; COMPND 4 FRAGMENT: UNP RESIDUES 276-399; COMPND 5 SYNONYM: PROTO-ONCOGENE FLI-1,TRANSCRIPTION FACTOR ERGB; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*G)-3'); COMPND 9 CHAIN: B, E, H, K; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'); COMPND 13 CHAIN: C, F, I, L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ENDOTHIA GYROSA; SOURCE 13 ORGANISM_TAXID: 40263; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: ENDOTHIA GYROSA; SOURCE 17 ORGANISM_TAXID: 40263 KEYWDS TRANSCRIPTION, DNA BINDING, EWING SARCOMA, WINGED HELIX, ETS FAMILY, KEYWDS 2 DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 4 27-SEP-23 5E8I 1 JRNL REMARK REVDAT 3 30-DEC-15 5E8I 1 JRNL REVDAT 2 16-DEC-15 5E8I 1 JRNL REVDAT 1 09-DEC-15 5E8I 0 JRNL AUTH C.HOU,O.V.TSODIKOV JRNL TITL STRUCTURAL BASIS FOR DIMERIZATION AND DNA BINDING OF JRNL TITL 2 TRANSCRIPTION FACTOR FLI1. JRNL REF BIOCHEMISTRY V. 54 7365 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26618620 JRNL DOI 10.1021/ACS.BIOCHEM.5B01121 REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 12993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 857 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3088 REMARK 3 NUCLEIC ACID ATOMS : 1621 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 133.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.66000 REMARK 3 B22 (A**2) : -3.66000 REMARK 3 B33 (A**2) : 11.88000 REMARK 3 B12 (A**2) : -1.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.577 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.517 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4981 ; 0.006 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 3825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7048 ; 0.878 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8841 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 4.834 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;37.652 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;12.947 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;12.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4554 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1218 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 2.592 ;13.136 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1483 ; 2.593 ;13.134 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1848 ; 4.473 ;19.682 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1849 ; 4.472 ;19.685 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3497 ; 2.291 ;13.913 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3496 ; 2.291 ;13.913 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5201 ; 4.018 ;20.867 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6126 ; 6.595 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6125 ; 6.594 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5E8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000214538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13800 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IRI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CACODYLATE PH 6.5, 0.2 M REMARK 280 CACL2, 14% W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.76067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.52133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.52133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.76067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 272 REMARK 465 PRO A 273 REMARK 465 HIS A 274 REMARK 465 MET A 275 REMARK 465 PRO A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 HIS A 372 REMARK 465 PRO A 373 REMARK 465 THR A 374 REMARK 465 GLU A 375 REMARK 465 SER A 376 REMARK 465 SER A 377 REMARK 465 MET A 378 REMARK 465 TYR A 379 REMARK 465 LYS A 380 REMARK 465 TYR A 381 REMARK 465 PRO A 382 REMARK 465 SER A 383 REMARK 465 ASP A 384 REMARK 465 ILE A 385 REMARK 465 SER A 386 REMARK 465 TYR A 387 REMARK 465 MET A 388 REMARK 465 PRO A 389 REMARK 465 SER A 390 REMARK 465 TYR A 391 REMARK 465 HIS A 392 REMARK 465 ALA A 393 REMARK 465 HIS A 394 REMARK 465 GLN A 395 REMARK 465 GLN A 396 REMARK 465 LYS A 397 REMARK 465 VAL A 398 REMARK 465 ASN A 399 REMARK 465 GLY D 272 REMARK 465 PRO D 273 REMARK 465 HIS D 274 REMARK 465 MET D 275 REMARK 465 PRO D 276 REMARK 465 GLY D 277 REMARK 465 SER D 278 REMARK 465 HIS D 372 REMARK 465 PRO D 373 REMARK 465 THR D 374 REMARK 465 GLU D 375 REMARK 465 SER D 376 REMARK 465 SER D 377 REMARK 465 MET D 378 REMARK 465 TYR D 379 REMARK 465 LYS D 380 REMARK 465 TYR D 381 REMARK 465 PRO D 382 REMARK 465 SER D 383 REMARK 465 ASP D 384 REMARK 465 ILE D 385 REMARK 465 SER D 386 REMARK 465 TYR D 387 REMARK 465 MET D 388 REMARK 465 PRO D 389 REMARK 465 SER D 390 REMARK 465 TYR D 391 REMARK 465 HIS D 392 REMARK 465 ALA D 393 REMARK 465 HIS D 394 REMARK 465 GLN D 395 REMARK 465 GLN D 396 REMARK 465 LYS D 397 REMARK 465 VAL D 398 REMARK 465 ASN D 399 REMARK 465 GLY G 272 REMARK 465 PRO G 273 REMARK 465 HIS G 274 REMARK 465 MET G 275 REMARK 465 PRO G 276 REMARK 465 GLY G 277 REMARK 465 SER G 278 REMARK 465 HIS G 372 REMARK 465 PRO G 373 REMARK 465 THR G 374 REMARK 465 GLU G 375 REMARK 465 SER G 376 REMARK 465 SER G 377 REMARK 465 MET G 378 REMARK 465 TYR G 379 REMARK 465 LYS G 380 REMARK 465 TYR G 381 REMARK 465 PRO G 382 REMARK 465 SER G 383 REMARK 465 ASP G 384 REMARK 465 ILE G 385 REMARK 465 SER G 386 REMARK 465 TYR G 387 REMARK 465 MET G 388 REMARK 465 PRO G 389 REMARK 465 SER G 390 REMARK 465 TYR G 391 REMARK 465 HIS G 392 REMARK 465 ALA G 393 REMARK 465 HIS G 394 REMARK 465 GLN G 395 REMARK 465 GLN G 396 REMARK 465 LYS G 397 REMARK 465 VAL G 398 REMARK 465 ASN G 399 REMARK 465 GLY J 272 REMARK 465 PRO J 273 REMARK 465 HIS J 274 REMARK 465 MET J 275 REMARK 465 PRO J 276 REMARK 465 GLY J 277 REMARK 465 SER J 278 REMARK 465 HIS J 372 REMARK 465 PRO J 373 REMARK 465 THR J 374 REMARK 465 GLU J 375 REMARK 465 SER J 376 REMARK 465 SER J 377 REMARK 465 MET J 378 REMARK 465 TYR J 379 REMARK 465 LYS J 380 REMARK 465 TYR J 381 REMARK 465 PRO J 382 REMARK 465 SER J 383 REMARK 465 ASP J 384 REMARK 465 ILE J 385 REMARK 465 SER J 386 REMARK 465 TYR J 387 REMARK 465 MET J 388 REMARK 465 PRO J 389 REMARK 465 SER J 390 REMARK 465 TYR J 391 REMARK 465 HIS J 392 REMARK 465 ALA J 393 REMARK 465 HIS J 394 REMARK 465 GLN J 395 REMARK 465 GLN J 396 REMARK 465 LYS J 397 REMARK 465 VAL J 398 REMARK 465 ASN J 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC C 14 O5' REMARK 470 DA E 2 O5' REMARK 470 DA H 2 O5' REMARK 470 DA K 2 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 303 119.38 -164.59 REMARK 500 LYS G 327 79.27 -155.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA F 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5E8G RELATED DB: PDB DBREF 5E8I A 276 399 UNP Q01543 FLI1_HUMAN 276 399 DBREF 5E8I B 2 11 PDB 5E8I 5E8I 2 11 DBREF 5E8I C 14 23 PDB 5E8I 5E8I 14 23 DBREF 5E8I D 276 399 UNP Q01543 FLI1_HUMAN 276 399 DBREF 5E8I E 2 11 PDB 5E8I 5E8I 2 11 DBREF 5E8I F 14 23 PDB 5E8I 5E8I 14 23 DBREF 5E8I G 276 399 UNP Q01543 FLI1_HUMAN 276 399 DBREF 5E8I H 2 11 PDB 5E8I 5E8I 2 11 DBREF 5E8I I 14 23 PDB 5E8I 5E8I 14 23 DBREF 5E8I J 276 399 UNP Q01543 FLI1_HUMAN 276 399 DBREF 5E8I K 2 11 PDB 5E8I 5E8I 2 11 DBREF 5E8I L 14 23 PDB 5E8I 5E8I 14 23 SEQADV 5E8I GLY A 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8I PRO A 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8I HIS A 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8I MET A 275 UNP Q01543 EXPRESSION TAG SEQADV 5E8I GLY D 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8I PRO D 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8I HIS D 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8I MET D 275 UNP Q01543 EXPRESSION TAG SEQADV 5E8I GLY G 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8I PRO G 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8I HIS G 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8I MET G 275 UNP Q01543 EXPRESSION TAG SEQADV 5E8I GLY J 272 UNP Q01543 EXPRESSION TAG SEQADV 5E8I PRO J 273 UNP Q01543 EXPRESSION TAG SEQADV 5E8I HIS J 274 UNP Q01543 EXPRESSION TAG SEQADV 5E8I MET J 275 UNP Q01543 EXPRESSION TAG SEQRES 1 A 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 A 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 A 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 A 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 A 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 A 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 A 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 A 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 A 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 A 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN SEQRES 1 B 10 DA DC DC DG DG DA DA DG DT DG SEQRES 1 C 10 DC DA DC DT DT DC DC DG DG DT SEQRES 1 D 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 D 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 D 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 D 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 D 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 D 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 D 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 D 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 D 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 D 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN SEQRES 1 E 10 DA DC DC DG DG DA DA DG DT DG SEQRES 1 F 10 DC DA DC DT DT DC DC DG DG DT SEQRES 1 G 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 G 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 G 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 G 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 G 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 G 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 G 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 G 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 G 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 G 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN SEQRES 1 H 10 DA DC DC DG DG DA DA DG DT DG SEQRES 1 I 10 DC DA DC DT DT DC DC DG DG DT SEQRES 1 J 128 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 J 128 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 J 128 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 J 128 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 J 128 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 J 128 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 J 128 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 J 128 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 9 J 128 SER SER MET TYR LYS TYR PRO SER ASP ILE SER TYR MET SEQRES 10 J 128 PRO SER TYR HIS ALA HIS GLN GLN LYS VAL ASN SEQRES 1 K 10 DA DC DC DG DG DA DA DG DT DG SEQRES 1 L 10 DC DA DC DT DT DC DC DG DG DT HET CA B 101 1 HET CA C 101 1 HET CA C 102 1 HET CA F 101 1 HET CA F 102 1 HET CA H 101 1 HET CA I 101 1 HET CA L 101 1 HETNAM CA CALCIUM ION FORMUL 13 CA 8(CA 2+) FORMUL 21 HOH *4(H2 O) HELIX 1 AA1 GLN A 282 ASP A 293 1 12 HELIX 2 AA2 SER A 294 SER A 298 5 5 HELIX 3 AA3 ASP A 313 SER A 326 1 14 HELIX 4 AA4 ASN A 331 LYS A 345 1 15 HELIX 5 AA5 ASP A 361 GLN A 370 1 10 HELIX 6 AA6 GLN D 282 ASP D 293 1 12 HELIX 7 AA7 SER D 294 CYS D 299 5 6 HELIX 8 AA8 ASP D 313 SER D 326 1 14 HELIX 9 AA9 ASN D 331 LYS D 345 1 15 HELIX 10 AB1 ASP D 361 GLN D 370 1 10 HELIX 11 AB2 GLN G 282 ASP G 293 1 12 HELIX 12 AB3 SER G 294 ALA G 297 5 4 HELIX 13 AB4 ASP G 313 SER G 326 1 14 HELIX 14 AB5 ASN G 331 TYR G 341 1 11 HELIX 15 AB6 ASP G 361 GLN G 370 1 10 HELIX 16 AB7 GLN J 282 ASP J 293 1 12 HELIX 17 AB8 SER J 294 ALA J 297 5 4 HELIX 18 AB9 ASP J 313 SER J 326 1 14 HELIX 19 AC1 ASN J 331 TYR J 342 1 12 HELIX 20 AC2 ASP J 361 GLN J 370 1 10 SHEET 1 AA1 4 ILE A 300 TRP A 302 0 SHEET 2 AA1 4 GLU A 308 MET A 311 -1 O LYS A 310 N THR A 301 SHEET 3 AA1 4 ALA A 357 PHE A 360 -1 O TYR A 358 N PHE A 309 SHEET 4 AA1 4 MET A 348 LYS A 350 -1 N THR A 349 O LYS A 359 SHEET 1 AA2 4 THR D 301 TRP D 302 0 SHEET 2 AA2 4 GLU D 308 LYS D 310 -1 O LYS D 310 N THR D 301 SHEET 3 AA2 4 ALA D 357 PHE D 360 -1 O TYR D 358 N PHE D 309 SHEET 4 AA2 4 MET D 348 LYS D 350 -1 N THR D 349 O LYS D 359 SHEET 1 AA3 4 THR G 301 TRP G 302 0 SHEET 2 AA3 4 GLU G 308 LYS G 310 -1 O LYS G 310 N THR G 301 SHEET 3 AA3 4 ALA G 357 PHE G 360 -1 O TYR G 358 N PHE G 309 SHEET 4 AA3 4 MET G 348 LYS G 350 -1 N THR G 349 O LYS G 359 SHEET 1 AA4 4 THR J 301 TRP J 302 0 SHEET 2 AA4 4 GLU J 308 LYS J 310 -1 O LYS J 310 N THR J 301 SHEET 3 AA4 4 ALA J 357 PHE J 360 -1 O TYR J 358 N PHE J 309 SHEET 4 AA4 4 MET J 348 LYS J 350 -1 N THR J 349 O LYS J 359 LINK O6 DG B 9 CA CA B 101 1555 1555 3.04 SITE 1 AC1 1 DG B 9 SITE 1 AC2 1 DG C 21 SITE 1 AC3 1 DG F 21 CRYST1 86.647 86.647 230.282 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011541 0.006663 0.000000 0.00000 SCALE2 0.000000 0.013326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004343 0.00000