data_5EPJ # _entry.id 5EPJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.319 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5EPJ WWPDB D_1000215294 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EPJ _pdbx_database_status.recvd_initial_deposition_date 2015-11-11 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Tempel, W.' 2 'Walker, J.R.' 3 'Stuckey, J.I.' 4 'Dickson, B.M.' 5 'James, L.I.' 6 'Frye, S.V.' 7 'Bountra, C.' 8 'Arrowsmith, C.H.' 9 'Edwards, A.M.' 10 'Min, J.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal Structure of chromodomain of CBX7 in complex with inhibitor UNC3866' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Tempel, W.' 2 ? primary 'Walker, J.R.' 3 ? primary 'Stuckey, J.I.' 4 ? primary 'Dickson, B.M.' 5 ? primary 'James, L.I.' 6 ? primary 'Frye, S.V.' 7 ? primary 'Bountra, C.' 8 ? primary 'Arrowsmith, C.H.' 9 ? primary 'Edwards, A.M.' 10 ? primary 'Min, J.' 11 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5EPJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.286 _cell.length_a_esd ? _cell.length_b 40.286 _cell.length_b_esd ? _cell.length_c 82.092 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromobox protein homolog 7' 6816.852 1 ? ? ? ? 2 polymer syn 'peptide-like inhibitor UNC3866' 795.020 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 13 ? ? ? ? 4 water nat water 18.015 47 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE GEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE A ? 2 'polypeptide(L)' no yes '(5R0)FAL(ELY)(5R5)' XFALXX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 GLN n 1 4 VAL n 1 5 PHE n 1 6 ALA n 1 7 VAL n 1 8 GLU n 1 9 SER n 1 10 ILE n 1 11 ARG n 1 12 LYS n 1 13 LYS n 1 14 ARG n 1 15 VAL n 1 16 ARG n 1 17 LYS n 1 18 GLY n 1 19 LYS n 1 20 VAL n 1 21 GLU n 1 22 TYR n 1 23 LEU n 1 24 VAL n 1 25 LYS n 1 26 TRP n 1 27 LYS n 1 28 GLY n 1 29 TRP n 1 30 PRO n 1 31 PRO n 1 32 LYS n 1 33 TYR n 1 34 SER n 1 35 THR n 1 36 TRP n 1 37 GLU n 1 38 PRO n 1 39 GLU n 1 40 GLU n 1 41 HIS n 1 42 ILE n 1 43 LEU n 1 44 ASP n 1 45 PRO n 1 46 ARG n 1 47 LEU n 1 48 VAL n 1 49 MET n 1 50 ALA n 1 51 TYR n 1 52 GLU n 1 53 GLU n 1 54 LYS n 1 55 GLU n 1 56 GLU n 2 1 5R0 n 2 2 PHE n 2 3 ALA n 2 4 LEU n 2 5 ELY n 2 6 5R5 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 56 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CBX7 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R-pRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CBX7_HUMAN O95931 ? 1 GEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE 7 2 PDB 5EPJ 5EPJ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EPJ A 1 ? 56 ? O95931 7 ? 62 ? 7 62 2 2 5EPJ B 1 ? 6 ? 5EPJ 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5R0 non-polymer . '4-~{tert}-butylbenzoic acid' ? 'C11 H14 O2' 178.228 5R5 'L-peptide linking' n 'methyl L-serinate' 'methyl (2~{S})-2-azanyl-3-oxidanyl-propanoate' 'C4 H9 N O3' 119.119 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ELY 'L-peptide linking' n N~6~,N~6~-diethyl-L-lysine '(2S)-2-azanyl-6-(diethylamino)hexanoic acid' 'C10 H22 N2 O2' 202.294 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EPJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2 M ammonium formate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN A200' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-04-16 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5EPJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 36.170 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9487 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.400 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 51.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 327 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.040 _reflns.pdbx_Rpim_I_all 0.011 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 117543 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.600 1.630 ? 13.800 5495 ? ? 448 ? 98.200 ? ? ? ? 0.187 ? ? ? ? ? ? ? ? 12.300 ? ? ? ? 0.196 0.056 0 1 1 0.979 ? 8.770 36.170 ? 86.300 755 ? ? 88 ? 99.800 ? ? ? ? 0.023 ? ? ? ? ? ? ? ? 8.600 ? ? ? ? 0.025 0.008 0 2 1 1.000 ? # _refine.aniso_B[1][1] 0.0400 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 0.0400 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -0.0800 _refine.B_iso_max 41.320 _refine.B_iso_mean 12.1640 _refine.B_iso_min 5.050 _refine.correlation_coeff_Fo_to_Fc 0.9080 _refine.correlation_coeff_Fo_to_Fc_free 0.9010 _refine.details ;The structure was initially solved with same diffraction data but space group setting P41. ARP/WARP was used for density improvement and automated model building. PHENIX.ELBOW/MOGUL was used to generate geometry restraints for inhibitor building blocks. LIGAND was used for preparation of link restraints. Link restraints were manually modified, for example to establish planar geometry of the inhibitor's methyl ester terminus. COOT was used for interactive model building. Model geometry was evaluated with MOLPROBITY. Due to lack of clear electron density for the ligand's C-terminal serine methyl ester, uncertainty remains about the orientation of the ester's carbonyl plane and the rotameric state of the hydroxymethyl side chain ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5EPJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 36.1700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8760 _refine.ls_number_reflns_R_free 671 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7000 _refine.ls_percent_reflns_R_free 7.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2382 _refine.ls_R_factor_R_free 0.2599 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2366 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1160 _refine.pdbx_overall_ESU_R_Free 0.1090 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.0080 _refine.overall_SU_ML 0.0410 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 36.1700 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 552 _refine_hist.pdbx_number_residues_total 56 _refine_hist.pdbx_B_iso_mean_ligand 18.61 _refine_hist.pdbx_B_iso_mean_solvent 18.96 _refine_hist.pdbx_number_atoms_protein 470 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.015 0.019 529 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 525 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.589 1.966 718 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.907 3.000 1210 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.958 5.000 58 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 29.532 21.905 21 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.315 15.000 92 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 13.592 15.000 4 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.097 0.200 71 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.021 563 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 122 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 1.210 1.120 237 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.180 1.100 234 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.945 1.659 294 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.6020 _refine_ls_shell.d_res_low 1.6430 _refine_ls_shell.number_reflns_all 665 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.number_reflns_R_work 602 _refine_ls_shell.percent_reflns_obs 98.5200 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2260 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1280 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5EPJ _struct.title 'Crystal Structure of chromodomain of CBX7 in complex with inhibitor UNC3866' _struct.pdbx_descriptor 'Chromobox protein homolog 7, peptide-like inhibitor UNC3866' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EPJ _struct_keywords.text 'structural genomics, Structural Genomics Consortium, SGC, TRANSCRIPTION-TRANSCRIPTION INHIBITOR complex' _struct_keywords.pdbx_keywords 'TRANSCRIPTION/TRANSCRIPTION INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 30 ? SER A 34 ? PRO A 36 SER A 40 5 ? 5 HELX_P HELX_P2 AA2 GLU A 40 ? ILE A 42 ? GLU A 46 ILE A 48 5 ? 3 HELX_P HELX_P3 AA3 ASP A 44 ? LYS A 54 ? ASP A 50 LYS A 60 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? B 5R0 1 C1 ? ? ? 1_555 B PHE 2 N ? ? B 5R0 1 B PHE 2 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale both ? B LEU 4 C ? ? ? 1_555 B ELY 5 N ? ? B LEU 4 B ELY 5 1_555 ? ? ? ? ? ? ? 1.350 ? covale3 covale one ? B ELY 5 C ? ? ? 1_555 B 5R5 6 N ? ? B ELY 5 B 5R5 6 1_555 ? ? ? ? ? ? ? 1.340 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 4 ? PHE A 5 ? VAL A 10 PHE A 11 AA1 2 ALA B 3 ? LEU B 4 ? ALA B 3 LEU B 4 AA2 1 VAL A 7 ? ARG A 16 ? VAL A 13 ARG A 22 AA2 2 LYS A 19 ? TRP A 26 ? LYS A 25 TRP A 32 AA2 3 THR A 35 ? PRO A 38 ? THR A 41 PRO A 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 5 ? N PHE A 11 O ALA B 3 ? O ALA B 3 AA2 1 2 N ARG A 11 ? N ARG A 17 O LEU A 23 ? O LEU A 29 AA2 2 3 N VAL A 24 ? N VAL A 30 O THR A 35 ? O THR A 41 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'binding site for UNC3866 chain B' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 GLN A 3 ? GLN A 9 . ? 1_555 ? 2 AC1 18 VAL A 4 ? VAL A 10 . ? 1_555 ? 3 AC1 18 PHE A 5 ? PHE A 11 . ? 1_555 ? 4 AC1 18 ALA A 6 ? ALA A 12 . ? 1_555 ? 5 AC1 18 VAL A 7 ? VAL A 13 . ? 1_555 ? 6 AC1 18 VAL A 20 ? VAL A 26 . ? 5_545 ? 7 AC1 18 TRP A 26 ? TRP A 32 . ? 1_555 ? 8 AC1 18 GLY A 28 ? GLY A 34 . ? 7_555 ? 9 AC1 18 TRP A 29 ? TRP A 35 . ? 7_555 ? 10 AC1 18 TRP A 29 ? TRP A 35 . ? 1_555 ? 11 AC1 18 THR A 35 ? THR A 41 . ? 1_555 ? 12 AC1 18 GLU A 37 ? GLU A 43 . ? 1_555 ? 13 AC1 18 HIS A 41 ? HIS A 47 . ? 1_555 ? 14 AC1 18 LEU A 43 ? LEU A 49 . ? 1_555 ? 15 AC1 18 ASP A 44 ? ASP A 50 . ? 1_555 ? 16 AC1 18 ARG A 46 ? ARG A 52 . ? 1_555 ? 17 AC1 18 HOH P . ? HOH A 207 . ? 1_555 ? 18 AC1 18 HOH Q . ? HOH B 101 . ? 1_555 ? # _atom_sites.entry_id 5EPJ _atom_sites.fract_transf_matrix[1][1] 0.024823 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024823 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012181 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 7 ? ? ? A . n A 1 2 GLU 2 8 ? ? ? A . n A 1 3 GLN 3 9 9 GLN GLN A . n A 1 4 VAL 4 10 10 VAL VAL A . n A 1 5 PHE 5 11 11 PHE PHE A . n A 1 6 ALA 6 12 12 ALA ALA A . n A 1 7 VAL 7 13 13 VAL VAL A . n A 1 8 GLU 8 14 14 GLU GLU A . n A 1 9 SER 9 15 15 SER SER A . n A 1 10 ILE 10 16 16 ILE ILE A . n A 1 11 ARG 11 17 17 ARG ARG A . n A 1 12 LYS 12 18 18 LYS LYS A . n A 1 13 LYS 13 19 19 LYS LYS A . n A 1 14 ARG 14 20 20 ARG ARG A . n A 1 15 VAL 15 21 21 VAL VAL A . n A 1 16 ARG 16 22 22 ARG ARG A . n A 1 17 LYS 17 23 23 LYS LYS A . n A 1 18 GLY 18 24 24 GLY GLY A . n A 1 19 LYS 19 25 25 LYS LYS A . n A 1 20 VAL 20 26 26 VAL VAL A . n A 1 21 GLU 21 27 27 GLU GLU A . n A 1 22 TYR 22 28 28 TYR TYR A . n A 1 23 LEU 23 29 29 LEU LEU A . n A 1 24 VAL 24 30 30 VAL VAL A . n A 1 25 LYS 25 31 31 LYS LYS A . n A 1 26 TRP 26 32 32 TRP TRP A . n A 1 27 LYS 27 33 33 LYS LYS A . n A 1 28 GLY 28 34 34 GLY GLY A . n A 1 29 TRP 29 35 35 TRP TRP A . n A 1 30 PRO 30 36 36 PRO PRO A . n A 1 31 PRO 31 37 37 PRO PRO A . n A 1 32 LYS 32 38 38 LYS LYS A . n A 1 33 TYR 33 39 39 TYR TYR A . n A 1 34 SER 34 40 40 SER SER A . n A 1 35 THR 35 41 41 THR THR A . n A 1 36 TRP 36 42 42 TRP TRP A . n A 1 37 GLU 37 43 43 GLU GLU A . n A 1 38 PRO 38 44 44 PRO PRO A . n A 1 39 GLU 39 45 45 GLU GLU A . n A 1 40 GLU 40 46 46 GLU GLU A . n A 1 41 HIS 41 47 47 HIS HIS A . n A 1 42 ILE 42 48 48 ILE ILE A . n A 1 43 LEU 43 49 49 LEU LEU A . n A 1 44 ASP 44 50 50 ASP ASP A . n A 1 45 PRO 45 51 51 PRO PRO A . n A 1 46 ARG 46 52 52 ARG ARG A . n A 1 47 LEU 47 53 53 LEU LEU A . n A 1 48 VAL 48 54 54 VAL VAL A . n A 1 49 MET 49 55 55 MET MET A . n A 1 50 ALA 50 56 56 ALA ALA A . n A 1 51 TYR 51 57 57 TYR TYR A . n A 1 52 GLU 52 58 58 GLU GLU A . n A 1 53 GLU 53 59 59 GLU GLU A . n A 1 54 LYS 54 60 60 LYS LYS A . n A 1 55 GLU 55 61 ? ? ? A . n A 1 56 GLU 56 62 ? ? ? A . n B 2 1 5R0 1 1 0 5R0 TBZ B . n B 2 2 PHE 2 2 1 PHE PHE B . n B 2 3 ALA 3 3 2 ALA ALA B . n B 2 4 LEU 4 4 3 LEU LEU B . n B 2 5 ELY 5 5 4 ELY ELY B . n B 2 6 5R5 6 6 5 5R5 SER B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UNX 1 101 1 UNX UNX A . D 3 UNX 1 102 2 UNX UNX A . E 3 UNX 1 103 3 UNX UNX A . F 3 UNX 1 104 4 UNX UNX A . G 3 UNX 1 105 5 UNX UNX A . H 3 UNX 1 106 6 UNX UNX A . I 3 UNX 1 107 7 UNX UNX A . J 3 UNX 1 108 8 UNX UNX A . K 3 UNX 1 109 10 UNX UNX A . L 3 UNX 1 110 11 UNX UNX A . M 3 UNX 1 111 12 UNX UNX A . N 3 UNX 1 112 13 UNX UNX A . O 3 UNX 1 113 14 UNX UNX A . P 4 HOH 1 201 17 HOH HOH A . P 4 HOH 2 202 39 HOH HOH A . P 4 HOH 3 203 25 HOH HOH A . P 4 HOH 4 204 14 HOH HOH A . P 4 HOH 5 205 28 HOH HOH A . P 4 HOH 6 206 61 HOH HOH A . P 4 HOH 7 207 23 HOH HOH A . P 4 HOH 8 208 68 HOH HOH A . P 4 HOH 9 209 65 HOH HOH A . P 4 HOH 10 210 67 HOH HOH A . P 4 HOH 11 211 7 HOH HOH A . P 4 HOH 12 212 34 HOH HOH A . P 4 HOH 13 213 13 HOH HOH A . P 4 HOH 14 214 44 HOH HOH A . P 4 HOH 15 215 72 HOH HOH A . P 4 HOH 16 216 2 HOH HOH A . P 4 HOH 17 217 45 HOH HOH A . P 4 HOH 18 218 19 HOH HOH A . P 4 HOH 19 219 22 HOH HOH A . P 4 HOH 20 220 31 HOH HOH A . P 4 HOH 21 221 16 HOH HOH A . P 4 HOH 22 222 42 HOH HOH A . P 4 HOH 23 223 43 HOH HOH A . P 4 HOH 24 224 40 HOH HOH A . P 4 HOH 25 225 10 HOH HOH A . P 4 HOH 26 226 74 HOH HOH A . P 4 HOH 27 227 76 HOH HOH A . P 4 HOH 28 228 24 HOH HOH A . P 4 HOH 29 229 1 HOH HOH A . P 4 HOH 30 230 64 HOH HOH A . P 4 HOH 31 231 73 HOH HOH A . P 4 HOH 32 232 5 HOH HOH A . P 4 HOH 33 233 26 HOH HOH A . P 4 HOH 34 234 6 HOH HOH A . P 4 HOH 35 235 56 HOH HOH A . P 4 HOH 36 236 21 HOH HOH A . P 4 HOH 37 237 75 HOH HOH A . P 4 HOH 38 238 54 HOH HOH A . P 4 HOH 39 239 66 HOH HOH A . P 4 HOH 40 240 63 HOH HOH A . P 4 HOH 41 241 46 HOH HOH A . P 4 HOH 42 242 48 HOH HOH A . P 4 HOH 43 243 36 HOH HOH A . P 4 HOH 44 244 53 HOH HOH A . P 4 HOH 45 245 70 HOH HOH A . Q 4 HOH 1 101 3 HOH HOH B . Q 4 HOH 2 102 69 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_002208 _pdbx_molecule_features.name UNC3866 _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002208 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1280 ? 1 MORE -7 ? 1 'SSA (A^2)' 4430 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-16 2 'Structure model' 1 1 2015-12-30 3 'Structure model' 2 0 2019-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_chem_comp.mon_nstd_flag' 4 3 'Structure model' '_chem_comp.name' 5 3 'Structure model' '_chem_comp.pdbx_synonyms' 6 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.8 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0123 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 233 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 233 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_555 _pdbx_validate_symm_contact.dist 2.12 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 245 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.16 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 9 ? CG ? A GLN 3 CG 2 1 Y 1 A GLN 9 ? CD ? A GLN 3 CD 3 1 Y 1 A GLN 9 ? OE1 ? A GLN 3 OE1 4 1 Y 1 A GLN 9 ? NE2 ? A GLN 3 NE2 5 1 Y 1 A LYS 23 ? CE ? A LYS 17 CE 6 1 Y 1 A LYS 23 ? NZ ? A LYS 17 NZ 7 1 Y 1 A LYS 25 ? CD ? A LYS 19 CD 8 1 Y 1 A LYS 25 ? CE ? A LYS 19 CE 9 1 Y 1 A LYS 25 ? NZ ? A LYS 19 NZ 10 1 Y 1 A GLU 46 ? CD ? A GLU 40 CD 11 1 Y 1 A GLU 46 ? OE1 ? A GLU 40 OE1 12 1 Y 1 A GLU 46 ? OE2 ? A GLU 40 OE2 13 1 Y 1 A LYS 60 ? CG ? A LYS 54 CG 14 1 Y 1 A LYS 60 ? CD ? A LYS 54 CD 15 1 Y 1 A LYS 60 ? CE ? A LYS 54 CE 16 1 Y 1 A LYS 60 ? NZ ? A LYS 54 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 7 ? A GLY 1 2 1 Y 1 A GLU 8 ? A GLU 2 3 1 Y 1 A GLU 61 ? A GLU 55 4 1 Y 1 A GLU 62 ? A GLU 56 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH #