data_5EWB # _entry.id 5EWB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5EWB pdb_00005ewb 10.2210/pdb5ewb/pdb WWPDB D_1000215571 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-18 2 'Structure model' 1 1 2016-07-20 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EWB _pdbx_database_status.recvd_initial_deposition_date 2015-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details '5ET9 contains racemic crystal structure of the Pribnow box in the space group P21/n' _pdbx_database_related.db_id 5ET9 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Collie, G.W.' 2 'Kauffmann, B.' 3 'Srivastava, S.C.' 4 'Huc, I.' 5 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nucleic Acids Res.' NARHAD 0389 1362-4962 ? ? 44 ? 5936 5943 'Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.' 2016 ? 10.1093/nar/gkw367 27137886 ? ? ? ? ? ? ? ? GE ? ? 1 'Angew Chem Int Ed Engl.' ? 9999 1433-7851 ? ? 53 ? 14424 14427 'Racemic DNA Crystallography' 2014 ? 10.1002/anie.201409014 25358289 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Collie, G.W.' 2 ? primary 'Srivastava, S.C.' 3 ? primary 'Kauffmann, B.' 4 ? primary 'Huc, I.' 5 ? 1 'Mandal, P.K.' 6 ? 1 'Collie, G.W.' 7 ? 1 'Kauffmann, B.' 8 ? 1 'Huc, I.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'PRIBNOW BOX CONSENSUS SEQUENCE- TEMPLATE STRAND' 3662.404 2 ? ? ? 'Pribnow box template strand containing consensus sequence TATAAT' 2 polymer syn 'PRIBNOW BOX CONSENSUS SEQUENCE- NON-TEMPLATE STRAND' 3662.404 2 ? ? ? ? 3 water nat water 18.015 84 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DT)(DA)(DT)(DA)(DA)(DT)(DG)(DC)(DG)' CGCTATAATGCG A,C ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DA)(DT)(DT)(DA)(DT)(DA)(DG)(DC)(DG)' CGCATTATAGCG B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DT n 2 7 DA n 2 8 DT n 2 9 DA n 2 10 DG n 2 11 DC n 2 12 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 12 'synthetic construct' ? 32630 'Pribnow box consensus sequence TATAAT' 2 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DA 9 9 9 DA DA B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n C 1 1 DC 1 1 1 DC DC C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DC 3 3 3 DC DC C . n C 1 4 DT 4 4 4 DT DT C . n C 1 5 DA 5 5 5 DA DA C . n C 1 6 DT 6 6 6 DT DT C . n C 1 7 DA 7 7 7 DA DA C . n C 1 8 DA 8 8 8 DA DA C . n C 1 9 DT 9 9 9 DT DT C . n C 1 10 DG 10 10 10 DG DG C . n C 1 11 DC 11 11 11 DC DC C . n C 1 12 DG 12 12 12 DG DG C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DG 2 2 2 DG DG D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DA 4 4 4 DA DA D . n D 2 5 DT 5 5 5 DT DT D . n D 2 6 DT 6 6 6 DT DT D . n D 2 7 DA 7 7 7 DA DA D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DA 9 9 9 DA DA D . n D 2 10 DG 10 10 10 DG DG D . n D 2 11 DC 11 11 11 DC DC D . n D 2 12 DG 12 12 12 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 101 59 HOH HOH A . E 3 HOH 2 102 34 HOH HOH A . E 3 HOH 3 103 27 HOH HOH A . E 3 HOH 4 104 18 HOH HOH A . E 3 HOH 5 105 22 HOH HOH A . E 3 HOH 6 106 83 HOH HOH A . E 3 HOH 7 107 30 HOH HOH A . E 3 HOH 8 108 13 HOH HOH A . E 3 HOH 9 109 64 HOH HOH A . E 3 HOH 10 110 49 HOH HOH A . E 3 HOH 11 111 65 HOH HOH A . E 3 HOH 12 112 74 HOH HOH A . E 3 HOH 13 113 23 HOH HOH A . E 3 HOH 14 114 28 HOH HOH A . E 3 HOH 15 115 61 HOH HOH A . E 3 HOH 16 116 50 HOH HOH A . E 3 HOH 17 117 81 HOH HOH A . E 3 HOH 18 118 41 HOH HOH A . E 3 HOH 19 119 55 HOH HOH A . E 3 HOH 20 120 80 HOH HOH A . E 3 HOH 21 121 72 HOH HOH A . F 3 HOH 1 101 15 HOH HOH B . F 3 HOH 2 102 7 HOH HOH B . F 3 HOH 3 103 2 HOH HOH B . F 3 HOH 4 104 31 HOH HOH B . F 3 HOH 5 105 6 HOH HOH B . F 3 HOH 6 106 48 HOH HOH B . F 3 HOH 7 107 45 HOH HOH B . F 3 HOH 8 108 78 HOH HOH B . F 3 HOH 9 109 29 HOH HOH B . F 3 HOH 10 110 63 HOH HOH B . F 3 HOH 11 111 9 HOH HOH B . F 3 HOH 12 112 11 HOH HOH B . F 3 HOH 13 113 26 HOH HOH B . F 3 HOH 14 114 14 HOH HOH B . F 3 HOH 15 115 82 HOH HOH B . F 3 HOH 16 116 40 HOH HOH B . F 3 HOH 17 117 10 HOH HOH B . F 3 HOH 18 118 75 HOH HOH B . F 3 HOH 19 119 5 HOH HOH B . F 3 HOH 20 120 76 HOH HOH B . F 3 HOH 21 121 77 HOH HOH B . G 3 HOH 1 101 38 HOH HOH C . G 3 HOH 2 102 73 HOH HOH C . G 3 HOH 3 103 68 HOH HOH C . G 3 HOH 4 104 19 HOH HOH C . G 3 HOH 5 105 20 HOH HOH C . G 3 HOH 6 106 60 HOH HOH C . G 3 HOH 7 107 12 HOH HOH C . G 3 HOH 8 108 35 HOH HOH C . G 3 HOH 9 109 44 HOH HOH C . G 3 HOH 10 110 51 HOH HOH C . G 3 HOH 11 111 46 HOH HOH C . G 3 HOH 12 112 32 HOH HOH C . G 3 HOH 13 113 39 HOH HOH C . G 3 HOH 14 114 47 HOH HOH C . G 3 HOH 15 115 33 HOH HOH C . G 3 HOH 16 116 79 HOH HOH C . H 3 HOH 1 101 56 HOH HOH D . H 3 HOH 2 102 53 HOH HOH D . H 3 HOH 3 103 57 HOH HOH D . H 3 HOH 4 104 16 HOH HOH D . H 3 HOH 5 105 69 HOH HOH D . H 3 HOH 6 106 8 HOH HOH D . H 3 HOH 7 107 1 HOH HOH D . H 3 HOH 8 108 58 HOH HOH D . H 3 HOH 9 109 3 HOH HOH D . H 3 HOH 10 110 66 HOH HOH D . H 3 HOH 11 111 36 HOH HOH D . H 3 HOH 12 112 70 HOH HOH D . H 3 HOH 13 113 52 HOH HOH D . H 3 HOH 14 114 24 HOH HOH D . H 3 HOH 15 115 62 HOH HOH D . H 3 HOH 16 116 21 HOH HOH D . H 3 HOH 17 117 17 HOH HOH D . H 3 HOH 18 118 25 HOH HOH D . H 3 HOH 19 119 43 HOH HOH D . H 3 HOH 20 120 37 HOH HOH D . H 3 HOH 21 121 71 HOH HOH D . H 3 HOH 22 122 54 HOH HOH D . H 3 HOH 23 123 4 HOH HOH D . H 3 HOH 24 124 42 HOH HOH D . H 3 HOH 25 125 84 HOH HOH D . H 3 HOH 26 126 67 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 109.22 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5EWB _cell.details ? _cell.formula_units_Z ? _cell.length_a 45.118 _cell.length_a_esd ? _cell.length_b 67.115 _cell.length_b_esd ? _cell.length_c 47.860 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 14 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21/c 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EWB _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Racemic DNA mixture*, sodium cacodylate, sodium chloride, potassium chloride, spermine tetrahydrochloride, MPD *For crystallization, four strands were used i.e. (1) d(CGCTATAATGCG) with L-sugars; (2) d(CGCATTATAGCG) with L-sugars; (3) d(CGCTATAATGCG) with D-sugars and (4) d(CGCATTATAGCG) with D-sugars. Enantio-pure DNA solutions were prepared between the non-self complementary strands. Enantiopure DNA solutions were mixed in equimolar ratio and this racemic mixture was used for crystallization. ; _exptl_crystal_grow.pdbx_pH_range 7.0 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-06-11 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9785 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9785 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5EWB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.69 _reflns.d_resolution_low 42.60 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29346 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.30 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.56 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.64 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.69 _reflns_shell.d_res_low 1.75 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.02 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 97.10 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.515 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.42 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5EWB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.694 _refine.ls_d_res_low 42.60 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29228 _refine.ls_number_reflns_R_free 1431 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.14 _refine.ls_percent_reflns_R_free 4.90 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.3012 _refine.ls_R_factor_R_free 0.3496 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2988 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1FQ2 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.63 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.21 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 972 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 1056 _refine_hist.d_res_high 1.694 _refine_hist.d_res_low 42.60 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1088 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.012 ? 1672 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 32.169 ? 464 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.052 ? 188 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 ? 48 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6940 1.7546 . . 127 2679 95.00 . . . 0.4835 . 0.4521 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7546 1.8248 . . 150 2763 99.00 . . . 0.4477 . 0.4263 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8248 1.9079 . . 143 2794 100.00 . . . 0.4447 . 0.4153 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9079 2.0085 . . 149 2787 100.00 . . . 0.4311 . 0.4257 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0085 2.1343 . . 154 2780 100.00 . . . 0.4676 . 0.3811 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1343 2.2991 . . 130 2824 100.00 . . . 0.4737 . 0.3571 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2991 2.5304 . . 174 2778 100.00 . . . 0.3492 . 0.3576 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5304 2.8965 . . 131 2817 100.00 . . . 0.4228 . 0.3574 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8965 3.6490 . . 142 2762 99.00 . . . 0.3397 . 0.3093 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6490 42.6154 . . 131 2813 100.00 . . . 0.2588 . 0.2064 . . . . . . . . . . # _struct.entry_id 5EWB _struct.title 'Racemic crystal structures of Pribnow box consensus promoter sequence (P21/c)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EWB _struct_keywords.text 'Racemic DNA crystallography, Pribnow box, Bacterial Promoter, B-DNA, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5EWB 5EWB ? 1 ? 1 2 PDB 5EWB 5EWB ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EWB A 1 ? 12 ? 5EWB 1 ? 12 ? 1 12 2 2 5EWB B 1 ? 12 ? 5EWB 1 ? 12 ? 1 12 3 1 5EWB C 1 ? 12 ? 5EWB 1 ? 12 ? 1 12 4 2 5EWB D 1 ? 12 ? 5EWB 1 ? 12 ? 1 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 4 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 6 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 6 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 7 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 7 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 9 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 9 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 12 N1 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 12 O6 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 12 N2 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 10 N1 ? ? C DC 3 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 10 O6 ? ? C DC 3 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 10 N2 ? ? C DC 3 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 9 N1 ? ? C DT 4 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 9 N6 ? ? C DT 4 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 5 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 5 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 6 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 6 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 7 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 7 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 8 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 8 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 10 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 12 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 12 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 12 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.61 108.30 3.31 0.30 N 2 1 "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? "C1'" B DG 10 ? ? 97.15 102.40 -5.25 0.80 N 3 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.45 108.30 3.15 0.30 N 4 1 "C3'" C DG 10 ? ? "C2'" C DG 10 ? ? "C1'" C DG 10 ? ? 97.55 102.40 -4.85 0.80 N 5 1 "O4'" C DG 10 ? ? "C1'" C DG 10 ? ? N9 C DG 10 ? ? 111.12 108.30 2.82 0.30 N 6 1 "C3'" D DG 10 ? ? "C2'" D DG 10 ? ? "C1'" D DG 10 ? ? 97.51 102.40 -4.89 0.80 N 7 1 "O4'" D DG 10 ? ? "C1'" D DG 10 ? ? N9 D DG 10 ? ? 110.58 108.30 2.28 0.30 N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 45.2314 4.6552 8.5881 0.3839 ? 0.0712 ? -0.1104 ? 0.3974 ? -0.0642 ? 0.4816 ? 2.3824 ? 0.1401 ? 0.2738 ? 3.4968 ? -0.2237 ? 2.9191 ? -0.3568 ? 0.1361 ? 0.5486 ? -0.4487 ? -0.3175 ? 0.4810 ? -0.4350 ? -0.3977 ? 0.5475 ? 2 'X-RAY DIFFRACTION' ? refined 44.0677 23.2576 17.0321 0.4018 ? 0.0060 ? 0.0198 ? 0.3726 ? -0.0542 ? 0.3345 ? 6.3926 ? -2.2891 ? 2.3152 ? 7.9204 ? -0.3182 ? 2.0659 ? -0.0576 ? 0.4147 ? 0.4609 ? 0.4967 ? -0.3429 ? -0.6605 ? 0.2567 ? -0.0118 ? 0.4309 ? 3 'X-RAY DIFFRACTION' ? refined 40.6372 24.4658 13.5866 0.4425 ? 0.0568 ? 0.0148 ? 0.3673 ? -0.0353 ? 0.3647 ? 1.2453 ? -1.1725 ? 0.9854 ? 2.5756 ? -0.3661 ? 0.9738 ? 0.2814 ? 0.3180 ? -0.2248 ? -0.3626 ? -0.3686 ? -0.1164 ? 0.1892 ? 0.1797 ? 0.1087 ? 4 'X-RAY DIFFRACTION' ? refined 47.1804 4.5655 16.2136 0.3856 ? 0.0643 ? -0.0944 ? 0.4253 ? -0.0035 ? 0.4428 ? 0.9590 ? -1.3154 ? -0.5772 ? 8.1129 ? 3.5309 ? 7.9799 ? 0.0566 ? -0.0847 ? 0.4257 ? 0.4981 ? -0.6462 ? -0.0582 ? -0.2852 ? -0.7685 ? 0.4840 ? 5 'X-RAY DIFFRACTION' ? refined 58.8208 7.4341 32.0831 0.3284 ? 0.0617 ? 0.0158 ? 0.3442 ? -0.0208 ? 0.4052 ? 1.6207 ? -0.0037 ? 0.7333 ? 3.3627 ? 0.5307 ? 2.9582 ? -0.2135 ? 0.1637 ? 0.6310 ? 0.1282 ? -0.1065 ? 0.3205 ? -0.3288 ? -0.3379 ? 0.4150 ? 6 'X-RAY DIFFRACTION' ? refined 58.6620 25.8376 39.4618 0.3544 ? 0.0101 ? 0.1049 ? 0.3912 ? -0.0348 ? 0.5288 ? 2.8336 ? -1.1451 ? 1.0683 ? 5.0095 ? -0.4695 ? 3.0532 ? -0.0332 ? 0.2945 ? 0.0179 ? 0.3084 ? -0.3086 ? -0.9884 ? 0.2093 ? 0.1913 ? 0.3374 ? 7 'X-RAY DIFFRACTION' ? refined 55.5518 27.2005 36.1033 0.3537 ? 0.0279 ? 0.0906 ? 0.3694 ? -0.0393 ? 0.3855 ? 0.8202 ? -0.4077 ? 0.9833 ? 2.5626 ? -0.0552 ? 1.2424 ? 0.0403 ? 0.4262 ? -0.2991 ? -0.6196 ? -0.1719 ? -0.4185 ? -0.0512 ? 0.1111 ? 0.1100 ? 8 'X-RAY DIFFRACTION' ? refined 60.5092 6.9425 39.7983 0.4273 ? 0.0649 ? -0.0311 ? 0.3741 ? -0.0157 ? 0.4188 ? 4.0124 ? -0.1574 ? 0.4306 ? 6.9891 ? 2.4520 ? 8.0424 ? 0.0174 ? -0.6228 ? 0.6630 ? 0.9088 ? -0.2403 ? -0.6324 ? 0.5027 ? -0.5586 ? 0.2804 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 5 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 6 through 12 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 7 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 8 through 12 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 5 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 6 through 12 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 1 through 7 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 8 through 12 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 5EWB _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.173 -0.273 0.472 5.266 -13.640 -3.611 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.128 -0.193 0.058 0.221 -9.911 -2.671 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.144 -0.141 0.141 -6.350 -10.078 2.727 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DT 4 1_555 B DA 9 1_555 -0.901 -0.097 -0.179 9.894 -10.013 1.787 4 A_DT4:DA9_B A 4 ? B 9 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 1.011 -0.093 0.168 5.419 -14.333 4.651 5 A_DA5:DT8_B A 5 ? B 8 ? 20 1 1 A DT 6 1_555 B DA 7 1_555 -0.085 -0.020 0.128 2.997 -8.553 5.640 6 A_DT6:DA7_B A 6 ? B 7 ? 20 1 1 A DA 7 1_555 B DT 6 1_555 0.037 -0.110 0.074 -5.178 -10.314 3.957 7 A_DA7:DT6_B A 7 ? B 6 ? 20 1 1 A DA 8 1_555 B DT 5 1_555 0.434 -0.255 0.286 -0.874 -13.041 2.505 8 A_DA8:DT5_B A 8 ? B 5 ? 20 1 1 A DT 9 1_555 B DA 4 1_555 -0.559 -0.187 0.080 -7.828 -11.793 1.709 9 A_DT9:DA4_B A 9 ? B 4 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 -0.174 -0.168 0.287 8.168 -5.349 3.714 10 A_DG10:DC3_B A 10 ? B 3 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.070 -0.149 0.156 1.762 -15.431 -0.119 11 A_DC11:DG2_B A 11 ? B 2 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.377 -0.170 0.230 -6.636 -13.150 -0.605 12 A_DG12:DC1_B A 12 ? B 1 ? 19 1 1 C DC 1 1_555 D DG 12 1_555 0.280 -0.209 0.431 6.201 -15.851 -2.935 13 C_DC1:DG12_D C 1 ? D 12 ? 19 1 1 C DG 2 1_555 D DC 11 1_555 -0.288 -0.187 -0.161 -5.366 -7.200 -2.462 14 C_DG2:DC11_D C 2 ? D 11 ? 19 1 1 C DC 3 1_555 D DG 10 1_555 0.184 -0.155 0.016 -1.139 -8.137 1.436 15 C_DC3:DG10_D C 3 ? D 10 ? 19 1 1 C DT 4 1_555 D DA 9 1_555 -0.725 -0.290 -0.108 9.756 -10.466 3.107 16 C_DT4:DA9_D C 4 ? D 9 ? 20 1 1 C DA 5 1_555 D DT 8 1_555 0.999 -0.138 0.127 1.089 -15.714 5.171 17 C_DA5:DT8_D C 5 ? D 8 ? 20 1 1 C DT 6 1_555 D DA 7 1_555 0.042 -0.136 0.014 3.282 -11.780 4.331 18 C_DT6:DA7_D C 6 ? D 7 ? 20 1 1 C DA 7 1_555 D DT 6 1_555 -0.122 -0.101 0.153 -3.676 -10.517 6.142 19 C_DA7:DT6_D C 7 ? D 6 ? 20 1 1 C DA 8 1_555 D DT 5 1_555 0.332 -0.152 0.201 -1.759 -15.663 4.178 20 C_DA8:DT5_D C 8 ? D 5 ? 20 1 1 C DT 9 1_555 D DA 4 1_555 -0.615 -0.084 0.172 -12.542 -13.464 -0.378 21 C_DT9:DA4_D C 9 ? D 4 ? 20 1 1 C DG 10 1_555 D DC 3 1_555 -0.228 -0.055 0.343 7.600 -10.362 5.337 22 C_DG10:DC3_D C 10 ? D 3 ? 19 1 1 C DC 11 1_555 D DG 2 1_555 0.100 -0.158 0.333 -4.168 -15.511 -1.098 23 C_DC11:DG2_D C 11 ? D 2 ? 19 1 1 C DG 12 1_555 D DC 1 1_555 -0.249 -0.096 0.186 3.648 -5.820 -0.103 24 C_DG12:DC1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.950 0.684 3.434 6.788 0.389 37.824 0.988 -0.533 3.552 0.594 -10.370 38.408 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 1.087 0.038 3.476 1.133 -3.526 39.155 0.504 -1.472 3.489 -5.247 -1.687 39.323 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 10 1_555 A DT 4 1_555 B DA 9 1_555 -0.837 0.132 3.024 2.711 8.189 22.734 -2.057 2.773 2.784 19.878 -6.580 24.296 3 AA_DC3DT4:DA9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DT 4 1_555 B DA 9 1_555 A DA 5 1_555 B DT 8 1_555 0.304 0.562 3.469 -1.259 -2.837 47.256 0.942 -0.486 3.423 -3.535 1.569 47.352 4 AA_DT4DA5:DT8DA9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DA 5 1_555 B DT 8 1_555 A DT 6 1_555 B DA 7 1_555 0.220 -0.864 3.321 -0.112 -1.353 27.882 -1.462 -0.482 3.357 -2.805 0.232 27.914 5 AA_DA5DT6:DA7DT8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DT 6 1_555 B DA 7 1_555 A DA 7 1_555 B DT 6 1_555 -0.052 -0.259 3.436 0.506 -1.776 38.668 -0.161 0.143 3.444 -2.680 -0.763 38.711 6 AA_DT6DA7:DT6DA7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DA 7 1_555 B DT 6 1_555 A DA 8 1_555 B DT 5 1_555 -0.166 -0.340 3.193 -1.939 -4.435 37.429 0.037 0.010 3.215 -6.875 3.006 37.729 7 AA_DA7DA8:DT5DT6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DA 8 1_555 B DT 5 1_555 A DT 9 1_555 B DA 4 1_555 -0.176 -0.970 3.429 1.564 -2.506 30.093 -1.321 0.672 3.483 -4.812 -3.002 30.234 8 AA_DA8DT9:DA4DT5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 0.994 0.604 3.101 -3.463 4.128 31.384 0.390 -2.409 3.029 7.561 6.343 31.832 9 AA_DT9DG10:DC3DA4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.174 0.001 3.390 -1.000 -1.707 38.376 0.223 1.654 3.415 -2.595 1.520 38.425 10 AA_DG10DC11:DG2DC3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.872 0.078 3.407 -4.994 6.637 36.303 -0.815 0.661 3.453 10.484 7.889 37.209 11 AA_DC11DG12:DC1DG2_BB A 11 ? B 2 ? A 12 ? B 1 ? 1 C DC 1 1_555 D DG 12 1_555 C DG 2 1_555 D DC 11 1_555 0.835 0.528 3.634 6.586 -1.563 37.461 1.034 -0.335 3.698 -2.410 -10.153 38.046 12 CC_DC1DG2:DC11DG12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C DG 2 1_555 D DC 11 1_555 C DC 3 1_555 D DG 10 1_555 0.739 0.073 3.180 -0.118 0.780 36.472 0.012 -1.197 3.179 1.246 0.189 36.481 13 CC_DG2DC3:DG10DC11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C DC 3 1_555 D DG 10 1_555 C DT 4 1_555 D DA 9 1_555 -0.411 0.055 3.106 1.720 8.884 24.908 -2.116 1.331 2.917 19.782 -3.830 26.477 14 CC_DC3DT4:DA9DG10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C DT 4 1_555 D DA 9 1_555 C DA 5 1_555 D DT 8 1_555 0.312 0.464 3.506 0.134 0.871 46.438 0.509 -0.383 3.515 1.105 -0.170 46.446 15 CC_DT4DA5:DT8DA9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C DA 5 1_555 D DT 8 1_555 C DT 6 1_555 D DA 7 1_555 0.075 -0.832 3.192 1.182 -3.143 28.954 -0.975 0.107 3.263 -6.260 -2.353 29.144 16 CC_DA5DT6:DA7DT8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C DT 6 1_555 D DA 7 1_555 C DA 7 1_555 D DT 6 1_555 0.101 -0.494 3.333 -0.688 0.867 36.585 -0.907 -0.258 3.318 1.380 1.096 36.601 17 CC_DT6DA7:DT6DA7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C DA 7 1_555 D DT 6 1_555 C DA 8 1_555 D DT 5 1_555 -0.263 -0.253 3.202 -0.337 -3.581 38.555 0.050 0.356 3.214 -5.410 0.509 38.716 18 CC_DA7DA8:DT5DT6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C DA 8 1_555 D DT 5 1_555 C DT 9 1_555 D DA 4 1_555 -0.286 -1.021 3.504 -0.095 -2.495 30.558 -1.398 0.521 3.575 -4.723 0.181 30.657 19 CC_DA8DT9:DA4DT5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 C DT 9 1_555 D DA 4 1_555 C DG 10 1_555 D DC 3 1_555 0.818 0.826 2.920 -2.918 3.564 32.034 0.919 -1.930 2.909 6.417 5.254 32.354 20 CC_DT9DG10:DC3DA4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C DG 10 1_555 D DC 3 1_555 C DC 11 1_555 D DG 2 1_555 -1.121 0.456 3.581 -2.956 -8.101 42.934 1.459 1.195 3.509 -10.936 3.991 43.751 21 CC_DG10DC11:DG2DC3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C DC 11 1_555 D DG 2 1_555 C DG 12 1_555 D DC 1 1_555 -0.356 0.161 3.056 -0.067 5.365 34.878 -0.480 0.578 3.047 8.886 0.111 35.276 22 CC_DC11DG12:DC1DG2_DD C 11 ? D 2 ? C 12 ? D 1 ? # _pdbx_audit_support.funding_organization 'European Research Council' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ERC-2012-AdG-320892 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FQ2 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5EWB _atom_sites.fract_transf_matrix[1][1] 0.022164 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007729 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014900 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022128 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_