data_5F9Q # _entry.id 5F9Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5F9Q WWPDB D_1000216208 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5F9Q _pdbx_database_status.recvd_initial_deposition_date 2015-12-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, Y.' 1 'Guo, J.' 2 'Jiang, R.' 3 'Jin, X.' 4 'Fan, S.' 5 'Quan, C.S.' 6 'Ha, N.C.' 7 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Plos One' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1932-6203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first e0155846 _citation.page_last e0155846 _citation.title 'The Crystal Structure of the YknZ Extracellular Domain of ABC Transporter YknWXYZ from Bacillus amyloliquefaciens.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.pone.0155846 _citation.pdbx_database_id_PubMed 27243566 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Xu, Y.' 1 primary 'Guo, J.' 2 primary 'Wang, L.' 3 primary 'Jiang, R.' 4 primary 'Jin, X.' 5 primary 'Liu, J.' 6 primary 'Fan, S.' 7 primary 'Quan, C.S.' 8 primary 'Ha, N.C.' 9 # _cell.entry_id 5F9Q _cell.length_a 44.169 _cell.length_b 46.147 _cell.length_c 87.543 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F9Q _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Macrolide export ATP-binding/permease protein YknZ' 22082.582 1 ? ? 'Extracellural domain (UNP RESIDUES 58-256)' ? 2 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;NTIELFY(MSE)PSDEELTANPNALQEASFTEEDINGLKGVDGVKQVVASAVKS(MSE)TARYHEEDTDITLNGINSGY (MSE)DVKKLDVQDGRTFTDNDFLSGKRAGIISKK(MSE)AEKLFGKTSPLGKIVWAGGQPVEVIGVLKEESGFLSLGLS E(MSE)YVPFN(MSE)LKTSFGTNDYSNVSVQTESADQIKSTGKEAARLLNDNHGTKEAYQV(MSE)N ; _entity_poly.pdbx_seq_one_letter_code_can ;NTIELFYMPSDEELTANPNALQEASFTEEDINGLKGVDGVKQVVASAVKSMTARYHEEDTDITLNGINSGYMDVKKLDVQ DGRTFTDNDFLSGKRAGIISKKMAEKLFGKTSPLGKIVWAGGQPVEVIGVLKEESGFLSLGLSEMYVPFNMLKTSFGTND YSNVSVQTESADQIKSTGKEAARLLNDNHGTKEAYQVMN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 THR n 1 3 ILE n 1 4 GLU n 1 5 LEU n 1 6 PHE n 1 7 TYR n 1 8 MSE n 1 9 PRO n 1 10 SER n 1 11 ASP n 1 12 GLU n 1 13 GLU n 1 14 LEU n 1 15 THR n 1 16 ALA n 1 17 ASN n 1 18 PRO n 1 19 ASN n 1 20 ALA n 1 21 LEU n 1 22 GLN n 1 23 GLU n 1 24 ALA n 1 25 SER n 1 26 PHE n 1 27 THR n 1 28 GLU n 1 29 GLU n 1 30 ASP n 1 31 ILE n 1 32 ASN n 1 33 GLY n 1 34 LEU n 1 35 LYS n 1 36 GLY n 1 37 VAL n 1 38 ASP n 1 39 GLY n 1 40 VAL n 1 41 LYS n 1 42 GLN n 1 43 VAL n 1 44 VAL n 1 45 ALA n 1 46 SER n 1 47 ALA n 1 48 VAL n 1 49 LYS n 1 50 SER n 1 51 MSE n 1 52 THR n 1 53 ALA n 1 54 ARG n 1 55 TYR n 1 56 HIS n 1 57 GLU n 1 58 GLU n 1 59 ASP n 1 60 THR n 1 61 ASP n 1 62 ILE n 1 63 THR n 1 64 LEU n 1 65 ASN n 1 66 GLY n 1 67 ILE n 1 68 ASN n 1 69 SER n 1 70 GLY n 1 71 TYR n 1 72 MSE n 1 73 ASP n 1 74 VAL n 1 75 LYS n 1 76 LYS n 1 77 LEU n 1 78 ASP n 1 79 VAL n 1 80 GLN n 1 81 ASP n 1 82 GLY n 1 83 ARG n 1 84 THR n 1 85 PHE n 1 86 THR n 1 87 ASP n 1 88 ASN n 1 89 ASP n 1 90 PHE n 1 91 LEU n 1 92 SER n 1 93 GLY n 1 94 LYS n 1 95 ARG n 1 96 ALA n 1 97 GLY n 1 98 ILE n 1 99 ILE n 1 100 SER n 1 101 LYS n 1 102 LYS n 1 103 MSE n 1 104 ALA n 1 105 GLU n 1 106 LYS n 1 107 LEU n 1 108 PHE n 1 109 GLY n 1 110 LYS n 1 111 THR n 1 112 SER n 1 113 PRO n 1 114 LEU n 1 115 GLY n 1 116 LYS n 1 117 ILE n 1 118 VAL n 1 119 TRP n 1 120 ALA n 1 121 GLY n 1 122 GLY n 1 123 GLN n 1 124 PRO n 1 125 VAL n 1 126 GLU n 1 127 VAL n 1 128 ILE n 1 129 GLY n 1 130 VAL n 1 131 LEU n 1 132 LYS n 1 133 GLU n 1 134 GLU n 1 135 SER n 1 136 GLY n 1 137 PHE n 1 138 LEU n 1 139 SER n 1 140 LEU n 1 141 GLY n 1 142 LEU n 1 143 SER n 1 144 GLU n 1 145 MSE n 1 146 TYR n 1 147 VAL n 1 148 PRO n 1 149 PHE n 1 150 ASN n 1 151 MSE n 1 152 LEU n 1 153 LYS n 1 154 THR n 1 155 SER n 1 156 PHE n 1 157 GLY n 1 158 THR n 1 159 ASN n 1 160 ASP n 1 161 TYR n 1 162 SER n 1 163 ASN n 1 164 VAL n 1 165 SER n 1 166 VAL n 1 167 GLN n 1 168 THR n 1 169 GLU n 1 170 SER n 1 171 ALA n 1 172 ASP n 1 173 GLN n 1 174 ILE n 1 175 LYS n 1 176 SER n 1 177 THR n 1 178 GLY n 1 179 LYS n 1 180 GLU n 1 181 ALA n 1 182 ALA n 1 183 ARG n 1 184 LEU n 1 185 LEU n 1 186 ASN n 1 187 ASP n 1 188 ASN n 1 189 HIS n 1 190 GLY n 1 191 THR n 1 192 LYS n 1 193 GLU n 1 194 ALA n 1 195 TYR n 1 196 GLN n 1 197 VAL n 1 198 MSE n 1 199 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 199 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ABH13_1432 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus amyloliquefaciens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1390 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A0G3VAX9_BACAM _struct_ref.pdbx_db_accession A0A0G3VAX9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NTIELFYMPSDEELTANPNALQEASFTEEDINGLKGVDGVKQVVASAVKSMTARYHEEDTDITLNGINSGYMDVKKLDVQ DGRTFTDNDFLSGKRAGIISKKMAEKLFGKTSPLGKIVWAGGQPVEVIGVLKEESGFLSLGLSEMYVPFNMLKTSFGTND YSNVSVQTESADQIKSTGKEAARLLNDNHGTKEAYQVMN ; _struct_ref.pdbx_align_begin 58 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5F9Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 199 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A0G3VAX9 _struct_ref_seq.db_align_beg 58 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 256 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 214 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5F9Q _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '22.5% (w/v) polyethylene glycol 4000, 0.125 M ammonium acetate, 0.1 M sodium acetate trihydrate (pH 4.6)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 173 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-11-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9797 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5F9Q _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 41 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11741 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 10 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 12.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 95.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.093 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5F9Q _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11741 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.823 _refine.ls_d_res_high 2.044 _refine.ls_percent_reflns_obs 99.11 _refine.ls_R_factor_obs 0.1996 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1944 _refine.ls_R_factor_R_free 0.2473 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.93 _refine.ls_number_reflns_R_free 1166 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.30 _refine.pdbx_overall_phase_error 25.04 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1433 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1530 _refine_hist.d_res_high 2.044 _refine_hist.d_res_low 40.823 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1452 'X-RAY DIFFRACTION' ? f_angle_d 1.157 ? ? 1954 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.574 ? ? 539 'X-RAY DIFFRACTION' ? f_chiral_restr 0.043 ? ? 221 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 254 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0441 2.1371 1269 0.2945 99.00 0.3490 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.1371 2.2498 1284 0.2594 98.00 0.3056 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.2498 2.3907 1276 0.2341 97.00 0.2959 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.3907 2.5753 1328 0.2173 100.00 0.2772 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.5753 2.8344 1312 0.2173 100.00 0.2974 . . 149 . . . . 'X-RAY DIFFRACTION' . 2.8344 3.2444 1330 0.1935 100.00 0.2656 . . 149 . . . . 'X-RAY DIFFRACTION' . 3.2444 4.0870 1350 0.1603 100.00 0.2293 . . 149 . . . . 'X-RAY DIFFRACTION' . 4.0870 40.8306 1426 0.1638 99.00 0.1844 . . 157 . . . . # _struct.entry_id 5F9Q _struct.title 'Crystal structure of the extracellular domain of noncanonic ABC-type transporter YknZ from Gram-positive bacteria' _struct.pdbx_descriptor 'Macrolide export ATP-binding/permease protein YknZ' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5F9Q _struct_keywords.text 'Bacillus amyloliquefaciens, SDP transporter YknWXYZ, respective permease YknZ, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 10 ? THR A 15 ? SER A 25 THR A 30 1 ? 6 HELX_P HELX_P2 AA2 THR A 27 ? GLY A 36 ? THR A 42 GLY A 51 1 ? 10 HELX_P HELX_P3 AA3 ASN A 68 ? LYS A 75 ? ASN A 83 LYS A 90 1 ? 8 HELX_P HELX_P4 AA4 THR A 86 ? GLY A 93 ? THR A 101 GLY A 108 1 ? 8 HELX_P HELX_P5 AA5 SER A 100 ? GLY A 109 ? SER A 115 GLY A 124 1 ? 10 HELX_P HELX_P6 AA6 PHE A 149 ? PHE A 156 ? PHE A 164 PHE A 171 1 ? 8 HELX_P HELX_P7 AA7 SER A 170 ? ASP A 172 ? SER A 185 ASP A 187 5 ? 3 HELX_P HELX_P8 AA8 GLN A 173 ? GLY A 190 ? GLN A 188 GLY A 205 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A TYR 7 C ? ? ? 1_555 A MSE 8 N ? ? A TYR 22 A MSE 23 1_555 ? ? ? ? ? ? ? 1.341 ? covale2 covale both ? A MSE 8 C ? ? ? 1_555 A PRO 9 N ? ? A MSE 23 A PRO 24 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale both ? A SER 50 C ? ? ? 1_555 A MSE 51 N ? ? A SER 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale both ? A MSE 51 C ? ? ? 1_555 A THR 52 N ? ? A MSE 66 A THR 67 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale both ? A TYR 71 C ? ? ? 1_555 A MSE 72 N ? ? A TYR 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? A MSE 72 C ? ? ? 1_555 A ASP 73 N ? ? A MSE 87 A ASP 88 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale both ? A LYS 102 C ? ? ? 1_555 A MSE 103 N ? ? A LYS 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale both ? A MSE 103 C ? ? ? 1_555 A ALA 104 N ? ? A MSE 118 A ALA 119 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale both ? A GLU 144 C ? ? ? 1_555 A MSE 145 N ? ? A GLU 159 A MSE 160 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale both ? A MSE 145 C ? ? ? 1_555 A TYR 146 N ? ? A MSE 160 A TYR 161 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale both ? A ASN 150 C ? ? ? 1_555 A MSE 151 N ? ? A ASN 165 A MSE 166 1_555 ? ? ? ? ? ? ? 1.330 ? covale12 covale both ? A MSE 151 C ? ? ? 1_555 A LEU 152 N ? ? A MSE 166 A LEU 167 1_555 ? ? ? ? ? ? ? 1.338 ? covale13 covale both ? A VAL 197 C ? ? ? 1_555 A MSE 198 N ? ? A VAL 212 A MSE 213 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale both ? A MSE 198 C ? ? ? 1_555 A ASN 199 N ? ? A MSE 213 A ASN 214 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 9 ? AA2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 79 ? GLY A 82 ? VAL A 94 GLY A 97 AA1 2 GLN A 123 ? LEU A 131 ? GLN A 138 LEU A 146 AA1 3 ALA A 96 ? ILE A 99 ? ALA A 111 ILE A 114 AA1 4 GLU A 144 ? PRO A 148 ? GLU A 159 PRO A 163 AA1 5 GLU A 58 ? ILE A 67 ? GLU A 73 ILE A 82 AA1 6 VAL A 40 ? TYR A 55 ? VAL A 55 TYR A 70 AA1 7 ASN A 163 ? THR A 168 ? ASN A 178 THR A 183 AA1 8 THR A 2 ? TYR A 7 ? THR A 17 TYR A 22 AA1 9 TYR A 195 ? GLN A 196 ? TYR A 210 GLN A 211 AA2 1 VAL A 79 ? GLY A 82 ? VAL A 94 GLY A 97 AA2 2 GLN A 123 ? LEU A 131 ? GLN A 138 LEU A 146 AA2 3 ILE A 117 ? ALA A 120 ? ILE A 132 ALA A 135 AA2 4 VAL A 40 ? TYR A 55 ? VAL A 55 TYR A 70 AA2 5 ASN A 163 ? THR A 168 ? ASN A 178 THR A 183 AA2 6 THR A 2 ? TYR A 7 ? THR A 17 TYR A 22 AA2 7 TYR A 195 ? GLN A 196 ? TYR A 210 GLN A 211 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 80 ? N GLN A 95 O VAL A 130 ? O VAL A 145 AA1 2 3 O LEU A 131 ? O LEU A 146 N ILE A 99 ? N ILE A 114 AA1 3 4 N ILE A 98 ? N ILE A 113 O TYR A 146 ? O TYR A 161 AA1 4 5 O MSE A 145 ? O MSE A 160 N ASN A 65 ? N ASN A 80 AA1 5 6 O THR A 60 ? O THR A 75 N ALA A 53 ? N ALA A 68 AA1 6 7 N VAL A 44 ? N VAL A 59 O SER A 165 ? O SER A 180 AA1 7 8 O VAL A 164 ? O VAL A 179 N LEU A 5 ? N LEU A 20 AA1 8 9 N PHE A 6 ? N PHE A 21 O GLN A 196 ? O GLN A 211 AA2 1 2 N GLN A 80 ? N GLN A 95 O VAL A 130 ? O VAL A 145 AA2 2 3 O GLN A 123 ? O GLN A 138 N ALA A 120 ? N ALA A 135 AA2 3 4 O TRP A 119 ? O TRP A 134 N ARG A 54 ? N ARG A 69 AA2 4 5 N VAL A 44 ? N VAL A 59 O SER A 165 ? O SER A 180 AA2 5 6 O VAL A 164 ? O VAL A 179 N LEU A 5 ? N LEU A 20 AA2 6 7 N PHE A 6 ? N PHE A 21 O GLN A 196 ? O GLN A 211 # _atom_sites.entry_id 5F9Q _atom_sites.fract_transf_matrix[1][1] 0.022640 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021670 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011423 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 16 16 ASN ASN A . n A 1 2 THR 2 17 17 THR THR A . n A 1 3 ILE 3 18 18 ILE ILE A . n A 1 4 GLU 4 19 19 GLU GLU A . n A 1 5 LEU 5 20 20 LEU LEU A . n A 1 6 PHE 6 21 21 PHE PHE A . n A 1 7 TYR 7 22 22 TYR TYR A . n A 1 8 MSE 8 23 23 MSE MSE A . n A 1 9 PRO 9 24 24 PRO PRO A . n A 1 10 SER 10 25 25 SER SER A . n A 1 11 ASP 11 26 26 ASP ASP A . n A 1 12 GLU 12 27 27 GLU GLU A . n A 1 13 GLU 13 28 28 GLU GLU A . n A 1 14 LEU 14 29 29 LEU LEU A . n A 1 15 THR 15 30 30 THR THR A . n A 1 16 ALA 16 31 31 ALA ALA A . n A 1 17 ASN 17 32 32 ASN ASN A . n A 1 18 PRO 18 33 33 PRO PRO A . n A 1 19 ASN 19 34 ? ? ? A . n A 1 20 ALA 20 35 ? ? ? A . n A 1 21 LEU 21 36 ? ? ? A . n A 1 22 GLN 22 37 ? ? ? A . n A 1 23 GLU 23 38 ? ? ? A . n A 1 24 ALA 24 39 39 ALA ALA A . n A 1 25 SER 25 40 40 SER SER A . n A 1 26 PHE 26 41 41 PHE PHE A . n A 1 27 THR 27 42 42 THR THR A . n A 1 28 GLU 28 43 43 GLU GLU A . n A 1 29 GLU 29 44 44 GLU GLU A . n A 1 30 ASP 30 45 45 ASP ASP A . n A 1 31 ILE 31 46 46 ILE ILE A . n A 1 32 ASN 32 47 47 ASN ASN A . n A 1 33 GLY 33 48 48 GLY GLY A . n A 1 34 LEU 34 49 49 LEU LEU A . n A 1 35 LYS 35 50 50 LYS LYS A . n A 1 36 GLY 36 51 51 GLY GLY A . n A 1 37 VAL 37 52 52 VAL VAL A . n A 1 38 ASP 38 53 53 ASP ASP A . n A 1 39 GLY 39 54 54 GLY GLY A . n A 1 40 VAL 40 55 55 VAL VAL A . n A 1 41 LYS 41 56 56 LYS LYS A . n A 1 42 GLN 42 57 57 GLN GLN A . n A 1 43 VAL 43 58 58 VAL VAL A . n A 1 44 VAL 44 59 59 VAL VAL A . n A 1 45 ALA 45 60 60 ALA ALA A . n A 1 46 SER 46 61 61 SER SER A . n A 1 47 ALA 47 62 62 ALA ALA A . n A 1 48 VAL 48 63 63 VAL VAL A . n A 1 49 LYS 49 64 64 LYS LYS A . n A 1 50 SER 50 65 65 SER SER A . n A 1 51 MSE 51 66 66 MSE MSE A . n A 1 52 THR 52 67 67 THR THR A . n A 1 53 ALA 53 68 68 ALA ALA A . n A 1 54 ARG 54 69 69 ARG ARG A . n A 1 55 TYR 55 70 70 TYR TYR A . n A 1 56 HIS 56 71 71 HIS HIS A . n A 1 57 GLU 57 72 72 GLU GLU A . n A 1 58 GLU 58 73 73 GLU GLU A . n A 1 59 ASP 59 74 74 ASP ASP A . n A 1 60 THR 60 75 75 THR THR A . n A 1 61 ASP 61 76 76 ASP ASP A . n A 1 62 ILE 62 77 77 ILE ILE A . n A 1 63 THR 63 78 78 THR THR A . n A 1 64 LEU 64 79 79 LEU LEU A . n A 1 65 ASN 65 80 80 ASN ASN A . n A 1 66 GLY 66 81 81 GLY GLY A . n A 1 67 ILE 67 82 82 ILE ILE A . n A 1 68 ASN 68 83 83 ASN ASN A . n A 1 69 SER 69 84 84 SER SER A . n A 1 70 GLY 70 85 85 GLY GLY A . n A 1 71 TYR 71 86 86 TYR TYR A . n A 1 72 MSE 72 87 87 MSE MSE A . n A 1 73 ASP 73 88 88 ASP ASP A . n A 1 74 VAL 74 89 89 VAL VAL A . n A 1 75 LYS 75 90 90 LYS LYS A . n A 1 76 LYS 76 91 91 LYS LYS A . n A 1 77 LEU 77 92 92 LEU LEU A . n A 1 78 ASP 78 93 93 ASP ASP A . n A 1 79 VAL 79 94 94 VAL VAL A . n A 1 80 GLN 80 95 95 GLN GLN A . n A 1 81 ASP 81 96 96 ASP ASP A . n A 1 82 GLY 82 97 97 GLY GLY A . n A 1 83 ARG 83 98 98 ARG ARG A . n A 1 84 THR 84 99 99 THR THR A . n A 1 85 PHE 85 100 100 PHE PHE A . n A 1 86 THR 86 101 101 THR THR A . n A 1 87 ASP 87 102 102 ASP ASP A . n A 1 88 ASN 88 103 103 ASN ASN A . n A 1 89 ASP 89 104 104 ASP ASP A . n A 1 90 PHE 90 105 105 PHE PHE A . n A 1 91 LEU 91 106 106 LEU LEU A . n A 1 92 SER 92 107 107 SER SER A . n A 1 93 GLY 93 108 108 GLY GLY A . n A 1 94 LYS 94 109 109 LYS LYS A . n A 1 95 ARG 95 110 110 ARG ARG A . n A 1 96 ALA 96 111 111 ALA ALA A . n A 1 97 GLY 97 112 112 GLY GLY A . n A 1 98 ILE 98 113 113 ILE ILE A . n A 1 99 ILE 99 114 114 ILE ILE A . n A 1 100 SER 100 115 115 SER SER A . n A 1 101 LYS 101 116 116 LYS LYS A . n A 1 102 LYS 102 117 117 LYS LYS A . n A 1 103 MSE 103 118 118 MSE MSE A . n A 1 104 ALA 104 119 119 ALA ALA A . n A 1 105 GLU 105 120 120 GLU GLU A . n A 1 106 LYS 106 121 121 LYS LYS A . n A 1 107 LEU 107 122 122 LEU LEU A . n A 1 108 PHE 108 123 123 PHE PHE A . n A 1 109 GLY 109 124 124 GLY GLY A . n A 1 110 LYS 110 125 125 LYS LYS A . n A 1 111 THR 111 126 126 THR THR A . n A 1 112 SER 112 127 127 SER SER A . n A 1 113 PRO 113 128 128 PRO PRO A . n A 1 114 LEU 114 129 129 LEU LEU A . n A 1 115 GLY 115 130 130 GLY GLY A . n A 1 116 LYS 116 131 131 LYS LYS A . n A 1 117 ILE 117 132 132 ILE ILE A . n A 1 118 VAL 118 133 133 VAL VAL A . n A 1 119 TRP 119 134 134 TRP TRP A . n A 1 120 ALA 120 135 135 ALA ALA A . n A 1 121 GLY 121 136 136 GLY GLY A . n A 1 122 GLY 122 137 137 GLY GLY A . n A 1 123 GLN 123 138 138 GLN GLN A . n A 1 124 PRO 124 139 139 PRO PRO A . n A 1 125 VAL 125 140 140 VAL VAL A . n A 1 126 GLU 126 141 141 GLU GLU A . n A 1 127 VAL 127 142 142 VAL VAL A . n A 1 128 ILE 128 143 143 ILE ILE A . n A 1 129 GLY 129 144 144 GLY GLY A . n A 1 130 VAL 130 145 145 VAL VAL A . n A 1 131 LEU 131 146 146 LEU LEU A . n A 1 132 LYS 132 147 147 LYS LYS A . n A 1 133 GLU 133 148 148 GLU GLU A . n A 1 134 GLU 134 149 ? ? ? A . n A 1 135 SER 135 150 ? ? ? A . n A 1 136 GLY 136 151 ? ? ? A . n A 1 137 PHE 137 152 ? ? ? A . n A 1 138 LEU 138 153 ? ? ? A . n A 1 139 SER 139 154 ? ? ? A . n A 1 140 LEU 140 155 ? ? ? A . n A 1 141 GLY 141 156 156 GLY GLY A . n A 1 142 LEU 142 157 157 LEU LEU A . n A 1 143 SER 143 158 158 SER SER A . n A 1 144 GLU 144 159 159 GLU GLU A . n A 1 145 MSE 145 160 160 MSE MSE A . n A 1 146 TYR 146 161 161 TYR TYR A . n A 1 147 VAL 147 162 162 VAL VAL A . n A 1 148 PRO 148 163 163 PRO PRO A . n A 1 149 PHE 149 164 164 PHE PHE A . n A 1 150 ASN 150 165 165 ASN ASN A . n A 1 151 MSE 151 166 166 MSE MSE A . n A 1 152 LEU 152 167 167 LEU LEU A . n A 1 153 LYS 153 168 168 LYS LYS A . n A 1 154 THR 154 169 169 THR THR A . n A 1 155 SER 155 170 170 SER SER A . n A 1 156 PHE 156 171 171 PHE PHE A . n A 1 157 GLY 157 172 172 GLY GLY A . n A 1 158 THR 158 173 173 THR THR A . n A 1 159 ASN 159 174 174 ASN ASN A . n A 1 160 ASP 160 175 175 ASP ASP A . n A 1 161 TYR 161 176 176 TYR TYR A . n A 1 162 SER 162 177 177 SER SER A . n A 1 163 ASN 163 178 178 ASN ASN A . n A 1 164 VAL 164 179 179 VAL VAL A . n A 1 165 SER 165 180 180 SER SER A . n A 1 166 VAL 166 181 181 VAL VAL A . n A 1 167 GLN 167 182 182 GLN GLN A . n A 1 168 THR 168 183 183 THR THR A . n A 1 169 GLU 169 184 184 GLU GLU A . n A 1 170 SER 170 185 185 SER SER A . n A 1 171 ALA 171 186 186 ALA ALA A . n A 1 172 ASP 172 187 187 ASP ASP A . n A 1 173 GLN 173 188 188 GLN GLN A . n A 1 174 ILE 174 189 189 ILE ILE A . n A 1 175 LYS 175 190 190 LYS LYS A . n A 1 176 SER 176 191 191 SER SER A . n A 1 177 THR 177 192 192 THR THR A . n A 1 178 GLY 178 193 193 GLY GLY A . n A 1 179 LYS 179 194 194 LYS LYS A . n A 1 180 GLU 180 195 195 GLU GLU A . n A 1 181 ALA 181 196 196 ALA ALA A . n A 1 182 ALA 182 197 197 ALA ALA A . n A 1 183 ARG 183 198 198 ARG ARG A . n A 1 184 LEU 184 199 199 LEU LEU A . n A 1 185 LEU 185 200 200 LEU LEU A . n A 1 186 ASN 186 201 201 ASN ASN A . n A 1 187 ASP 187 202 202 ASP ASP A . n A 1 188 ASN 188 203 203 ASN ASN A . n A 1 189 HIS 189 204 204 HIS HIS A . n A 1 190 GLY 190 205 205 GLY GLY A . n A 1 191 THR 191 206 206 THR THR A . n A 1 192 LYS 192 207 207 LYS LYS A . n A 1 193 GLU 193 208 208 GLU GLU A . n A 1 194 ALA 194 209 209 ALA ALA A . n A 1 195 TYR 195 210 210 TYR TYR A . n A 1 196 GLN 196 211 211 GLN GLN A . n A 1 197 VAL 197 212 212 VAL VAL A . n A 1 198 MSE 198 213 213 MSE MSE A . n A 1 199 ASN 199 214 214 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 11 HOH HOH A . B 2 HOH 2 302 90 HOH HOH A . B 2 HOH 3 303 54 HOH HOH A . B 2 HOH 4 304 87 HOH HOH A . B 2 HOH 5 305 16 HOH HOH A . B 2 HOH 6 306 5 HOH HOH A . B 2 HOH 7 307 81 HOH HOH A . B 2 HOH 8 308 91 HOH HOH A . B 2 HOH 9 309 43 HOH HOH A . B 2 HOH 10 310 25 HOH HOH A . B 2 HOH 11 311 64 HOH HOH A . B 2 HOH 12 312 68 HOH HOH A . B 2 HOH 13 313 4 HOH HOH A . B 2 HOH 14 314 38 HOH HOH A . B 2 HOH 15 315 62 HOH HOH A . B 2 HOH 16 316 20 HOH HOH A . B 2 HOH 17 317 2 HOH HOH A . B 2 HOH 18 318 32 HOH HOH A . B 2 HOH 19 319 26 HOH HOH A . B 2 HOH 20 320 10 HOH HOH A . B 2 HOH 21 321 19 HOH HOH A . B 2 HOH 22 322 61 HOH HOH A . B 2 HOH 23 323 18 HOH HOH A . B 2 HOH 24 324 7 HOH HOH A . B 2 HOH 25 325 83 HOH HOH A . B 2 HOH 26 326 8 HOH HOH A . B 2 HOH 27 327 53 HOH HOH A . B 2 HOH 28 328 33 HOH HOH A . B 2 HOH 29 329 39 HOH HOH A . B 2 HOH 30 330 12 HOH HOH A . B 2 HOH 31 331 44 HOH HOH A . B 2 HOH 32 332 63 HOH HOH A . B 2 HOH 33 333 3 HOH HOH A . B 2 HOH 34 334 46 HOH HOH A . B 2 HOH 35 335 21 HOH HOH A . B 2 HOH 36 336 47 HOH HOH A . B 2 HOH 37 337 1 HOH HOH A . B 2 HOH 38 338 60 HOH HOH A . B 2 HOH 39 339 57 HOH HOH A . B 2 HOH 40 340 22 HOH HOH A . B 2 HOH 41 341 72 HOH HOH A . B 2 HOH 42 342 34 HOH HOH A . B 2 HOH 43 343 55 HOH HOH A . B 2 HOH 44 344 37 HOH HOH A . B 2 HOH 45 345 45 HOH HOH A . B 2 HOH 46 346 6 HOH HOH A . B 2 HOH 47 347 14 HOH HOH A . B 2 HOH 48 348 85 HOH HOH A . B 2 HOH 49 349 77 HOH HOH A . B 2 HOH 50 350 67 HOH HOH A . B 2 HOH 51 351 40 HOH HOH A . B 2 HOH 52 352 13 HOH HOH A . B 2 HOH 53 353 9 HOH HOH A . B 2 HOH 54 354 15 HOH HOH A . B 2 HOH 55 355 23 HOH HOH A . B 2 HOH 56 356 95 HOH HOH A . B 2 HOH 57 357 82 HOH HOH A . B 2 HOH 58 358 97 HOH HOH A . B 2 HOH 59 359 52 HOH HOH A . B 2 HOH 60 360 75 HOH HOH A . B 2 HOH 61 361 30 HOH HOH A . B 2 HOH 62 362 84 HOH HOH A . B 2 HOH 63 363 65 HOH HOH A . B 2 HOH 64 364 98 HOH HOH A . B 2 HOH 65 365 74 HOH HOH A . B 2 HOH 66 366 17 HOH HOH A . B 2 HOH 67 367 24 HOH HOH A . B 2 HOH 68 368 41 HOH HOH A . B 2 HOH 69 369 58 HOH HOH A . B 2 HOH 70 370 69 HOH HOH A . B 2 HOH 71 371 56 HOH HOH A . B 2 HOH 72 372 79 HOH HOH A . B 2 HOH 73 373 66 HOH HOH A . B 2 HOH 74 374 35 HOH HOH A . B 2 HOH 75 375 93 HOH HOH A . B 2 HOH 76 376 36 HOH HOH A . B 2 HOH 77 377 50 HOH HOH A . B 2 HOH 78 378 59 HOH HOH A . B 2 HOH 79 379 49 HOH HOH A . B 2 HOH 80 380 92 HOH HOH A . B 2 HOH 81 381 101 HOH HOH A . B 2 HOH 82 382 99 HOH HOH A . B 2 HOH 83 383 48 HOH HOH A . B 2 HOH 84 384 31 HOH HOH A . B 2 HOH 85 385 27 HOH HOH A . B 2 HOH 86 386 42 HOH HOH A . B 2 HOH 87 387 96 HOH HOH A . B 2 HOH 88 388 29 HOH HOH A . B 2 HOH 89 389 28 HOH HOH A . B 2 HOH 90 390 78 HOH HOH A . B 2 HOH 91 391 71 HOH HOH A . B 2 HOH 92 392 94 HOH HOH A . B 2 HOH 93 393 73 HOH HOH A . B 2 HOH 94 394 89 HOH HOH A . B 2 HOH 95 395 51 HOH HOH A . B 2 HOH 96 396 70 HOH HOH A . B 2 HOH 97 397 76 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 23 ? MET 'modified residue' 2 A MSE 51 A MSE 66 ? MET 'modified residue' 3 A MSE 72 A MSE 87 ? MET 'modified residue' 4 A MSE 103 A MSE 118 ? MET 'modified residue' 5 A MSE 145 A MSE 160 ? MET 'modified residue' 6 A MSE 151 A MSE 166 ? MET 'modified residue' 7 A MSE 198 A MSE 213 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 350 ? 1 MORE -12 ? 1 'SSA (A^2)' 9930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-03 2 'Structure model' 1 1 2016-09-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 28.4230 _pdbx_refine_tls.origin_y 18.5962 _pdbx_refine_tls.origin_z 20.0147 _pdbx_refine_tls.T[1][1] 0.1755 _pdbx_refine_tls.T[2][2] 0.1581 _pdbx_refine_tls.T[3][3] 0.1732 _pdbx_refine_tls.T[1][2] -0.0097 _pdbx_refine_tls.T[1][3] 0.0051 _pdbx_refine_tls.T[2][3] -0.0043 _pdbx_refine_tls.L[1][1] 1.1044 _pdbx_refine_tls.L[2][2] 0.8050 _pdbx_refine_tls.L[3][3] 1.2144 _pdbx_refine_tls.L[1][2] -0.1371 _pdbx_refine_tls.L[1][3] 0.6265 _pdbx_refine_tls.L[2][3] -0.2936 _pdbx_refine_tls.S[1][1] -0.0253 _pdbx_refine_tls.S[1][2] -0.0018 _pdbx_refine_tls.S[1][3] -0.0641 _pdbx_refine_tls.S[2][1] 0.0308 _pdbx_refine_tls.S[2][2] 0.0502 _pdbx_refine_tls.S[2][3] 0.0388 _pdbx_refine_tls.S[3][1] 0.0254 _pdbx_refine_tls.S[3][2] -0.0684 _pdbx_refine_tls.S[3][3] -0.0085 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.4_1496 1 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 362 ? ? O A HOH 382 ? ? 2.10 2 1 O A HOH 378 ? ? O A HOH 390 ? ? 2.17 3 1 OD2 A ASP 187 ? ? O A HOH 301 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 71 ? ? 45.18 -122.74 2 1 GLU A 208 ? ? -142.39 33.33 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 397 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.11 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 34 ? A ASN 19 2 1 Y 1 A ALA 35 ? A ALA 20 3 1 Y 1 A LEU 36 ? A LEU 21 4 1 Y 1 A GLN 37 ? A GLN 22 5 1 Y 1 A GLU 38 ? A GLU 23 6 1 Y 1 A GLU 149 ? A GLU 134 7 1 Y 1 A SER 150 ? A SER 135 8 1 Y 1 A GLY 151 ? A GLY 136 9 1 Y 1 A PHE 152 ? A PHE 137 10 1 Y 1 A LEU 153 ? A LEU 138 11 1 Y 1 A SER 154 ? A SER 139 12 1 Y 1 A LEU 155 ? A LEU 140 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'the National Natural Science Foundation of China' China 31200556 1 'the National Natural Science Foundation of China' China 21402024 2 'the National Natural Science Foundation of China' China 21272031 3 'China Postdoctoral Science Foundation' China 2013M540229 4 'the Fundamental Research Funds for the Central Universities' China DC201502020203 5 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #