data_5FSK # _entry.id 5FSK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5FSK PDBE EBI-65954 WWPDB D_1290065954 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5FSI unspecified 'MTH1 SUBSTRATE RECOGNITION: COMPLEX WITH 8-OXO-DGTP.' PDB 5FSL unspecified 'MTH1 SUBSTRATE RECOGNITION: COMPLEX WITH A METHYLAMINOPURINONE' PDB 5FSM unspecified 'MTH1 SUBSTRATE RECOGNITION: COMPLEX WITH A METHYLBENZIMIDAZOLYL ACETAMIDE.' PDB 5FSN unspecified 'MTH1 SUBSTRATE RECOGNITION: COMPLEX WITH A AMINOMETHYLPYRIMIDINYL OXYPROPANOL.' PDB 5FSO unspecified 'MTH1 SUBSTRATE RECOGNITION: COMPLEX WITH A METHYLAMINOPYRIMIDINEDIONE.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5FSK _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2016-01-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nissink, J.W.M.' 1 'Bista, M.' 2 'Breed, J.' 3 'Carter, N.' 4 'Embrey, K.' 5 'Read, J.' 6 'Phillips, C.' 7 'Winter, J.J.' 8 # _citation.id primary _citation.title 'Mth1 Substrate Recognition--an Example of Specific Promiscuity.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 11 _citation.page_first 51154 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26999531 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PONE.0151154 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nissink, J.W.M.' 1 primary 'Bista, M.' 2 primary 'Breed, J.' 3 primary 'Carter, N.' 4 primary 'Embrey, K.' 5 primary 'Read, J.' 6 primary 'Winter-Holt, J.J.' 7 # _cell.entry_id 5FSK _cell.length_a 60.495 _cell.length_b 65.608 _cell.length_c 36.348 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FSK _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE' 18253.736 1 '3.6.1.55, 3.6.1.56' ? 'UNP RESIDUES 42-197' ? 2 non-polymer syn "8-OXO-ADENOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 74 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '2-HYDROXY-DATP DIPHOSPHATASE, 8-OXO-DGTPASE, NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 1, NUDIX MOTIF 1, MTH1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGE PELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGE PELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLY n 1 6 ALA n 1 7 SER n 1 8 ARG n 1 9 LEU n 1 10 TYR n 1 11 THR n 1 12 LEU n 1 13 VAL n 1 14 LEU n 1 15 VAL n 1 16 LEU n 1 17 GLN n 1 18 PRO n 1 19 GLN n 1 20 ARG n 1 21 VAL n 1 22 LEU n 1 23 LEU n 1 24 GLY n 1 25 MET n 1 26 LYS n 1 27 LYS n 1 28 ARG n 1 29 GLY n 1 30 PHE n 1 31 GLY n 1 32 ALA n 1 33 GLY n 1 34 ARG n 1 35 TRP n 1 36 ASN n 1 37 GLY n 1 38 PHE n 1 39 GLY n 1 40 GLY n 1 41 LYS n 1 42 VAL n 1 43 GLN n 1 44 GLU n 1 45 GLY n 1 46 GLU n 1 47 THR n 1 48 ILE n 1 49 GLU n 1 50 ASP n 1 51 GLY n 1 52 ALA n 1 53 ARG n 1 54 ARG n 1 55 GLU n 1 56 LEU n 1 57 GLN n 1 58 GLU n 1 59 GLU n 1 60 SER n 1 61 GLY n 1 62 LEU n 1 63 THR n 1 64 VAL n 1 65 ASP n 1 66 ALA n 1 67 LEU n 1 68 HIS n 1 69 LYS n 1 70 VAL n 1 71 GLY n 1 72 GLN n 1 73 ILE n 1 74 VAL n 1 75 PHE n 1 76 GLU n 1 77 PHE n 1 78 VAL n 1 79 GLY n 1 80 GLU n 1 81 PRO n 1 82 GLU n 1 83 LEU n 1 84 MET n 1 85 ASP n 1 86 VAL n 1 87 HIS n 1 88 VAL n 1 89 PHE n 1 90 CYS n 1 91 THR n 1 92 ASP n 1 93 SER n 1 94 ILE n 1 95 GLN n 1 96 GLY n 1 97 THR n 1 98 PRO n 1 99 VAL n 1 100 GLU n 1 101 SER n 1 102 ASP n 1 103 GLU n 1 104 MET n 1 105 ARG n 1 106 PRO n 1 107 CYS n 1 108 TRP n 1 109 PHE n 1 110 GLN n 1 111 LEU n 1 112 ASP n 1 113 GLN n 1 114 ILE n 1 115 PRO n 1 116 PHE n 1 117 LYS n 1 118 ASP n 1 119 MET n 1 120 TRP n 1 121 PRO n 1 122 ASP n 1 123 ASP n 1 124 SER n 1 125 TYR n 1 126 TRP n 1 127 PHE n 1 128 PRO n 1 129 LEU n 1 130 LEU n 1 131 LEU n 1 132 GLN n 1 133 LYS n 1 134 LYS n 1 135 LYS n 1 136 PHE n 1 137 HIS n 1 138 GLY n 1 139 TYR n 1 140 PHE n 1 141 LYS n 1 142 PHE n 1 143 GLN n 1 144 GLY n 1 145 GLN n 1 146 ASP n 1 147 THR n 1 148 ILE n 1 149 LEU n 1 150 ASP n 1 151 TYR n 1 152 THR n 1 153 LEU n 1 154 ARG n 1 155 GLU n 1 156 VAL n 1 157 ASP n 1 158 THR n 1 159 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code 8ODP_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P36639 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5FSK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P36639 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 197 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 156 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5FSK GLY A 1 ? UNP P36639 ? ? 'expression tag' -2 1 1 5FSK SER A 2 ? UNP P36639 ? ? 'expression tag' -1 2 1 5FSK HIS A 3 ? UNP P36639 ? ? 'expression tag' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 H6Y non-polymer . "8-OXO-ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5FSK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.75 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91742 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength 0.91742 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5FSK _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 60.50 _reflns.d_resolution_high 1.56 _reflns.number_obs 21044 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.00 _reflns.B_iso_Wilson_estimate 22.16 _reflns.pdbx_redundancy 4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.75 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5FSK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21044 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.47 _refine.ls_d_res_high 1.56 _refine.ls_percent_reflns_obs 98.99 _refine.ls_R_factor_obs 0.2055 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2038 _refine.ls_R_factor_R_free 0.2424 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.72 _refine.ls_number_reflns_R_free 993 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9482 _refine.correlation_coeff_Fo_to_Fc_free 0.9275 _refine.B_iso_mean 23.38 _refine.aniso_B[1][1] 0.5228 _refine.aniso_B[2][2] 2.0354 _refine.aniso_B[3][3] -2.5583 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'IDEAL-DIST CONTACT TERM CONTACT SETUP. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.093 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.096 _refine.pdbx_overall_SU_R_Blow_DPI 0.096 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.097 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1198 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 1308 _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 44.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1313 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.11 ? 2.00 1802 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 438 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 31 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 194 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1313 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 4.26 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 14.85 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 162 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1503 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.d_res_high 1.56 _refine_ls_shell.d_res_low 1.64 _refine_ls_shell.number_reflns_R_work 2508 _refine_ls_shell.R_factor_R_work 0.2186 _refine_ls_shell.percent_reflns_obs 98.99 _refine_ls_shell.R_factor_R_free 0.2432 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.86 _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.number_reflns_all 2636 _refine_ls_shell.R_factor_all 0.2198 # _struct.entry_id 5FSK _struct.title 'MTH1 substrate recognition: Complex with 8-oxo-dGTP.' _struct.pdbx_descriptor '7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE (E.C.3.6.1.55, 3.6.1.56)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5FSK _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, NUDT1' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 47 ? GLY A 61 ? THR A 44 GLY A 58 1 ? 15 HELX_P HELX_P2 2 ASP A 112 ? ILE A 114 ? ASP A 109 ILE A 111 5 ? 3 HELX_P HELX_P3 3 PRO A 115 ? MET A 119 ? PRO A 112 MET A 116 5 ? 5 HELX_P HELX_P4 4 ASP A 122 ? GLN A 132 ? ASP A 119 GLN A 129 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 2 ? AD ? 7 ? AE ? 6 ? AF ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel AD 2 3 ? parallel AD 3 4 ? anti-parallel AD 4 5 ? parallel AD 5 6 ? anti-parallel AD 6 7 ? parallel AE 1 2 ? anti-parallel AE 2 3 ? parallel AE 3 4 ? anti-parallel AE 4 5 ? parallel AE 5 6 ? anti-parallel AF 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TRP A 35 ? ASN A 36 ? TRP A 32 ASN A 33 AA 2 ARG A 20 ? LYS A 26 ? ARG A 17 LYS A 23 AB 1 PHE A 38 ? LYS A 41 ? PHE A 35 LYS A 38 AB 2 SER A 7 ? LEU A 16 ? SER A 4 LEU A 13 AC 1 MET A 104 ? GLN A 110 ? MET A 101 GLN A 107 AC 2 ARG A 20 ? LYS A 26 ? ARG A 17 LYS A 23 AD 1 THR A 147 ? VAL A 156 ? THR A 144 VAL A 153 AD 2 LYS A 135 ? GLN A 143 ? LYS A 132 GLN A 140 AD 3 HIS A 68 ? PHE A 77 ? HIS A 65 PHE A 74 AD 4 LEU A 83 ? THR A 91 ? LEU A 80 THR A 88 AD 5 SER A 7 ? LEU A 16 ? SER A 4 LEU A 13 AD 6 ARG A 20 ? LYS A 26 ? ARG A 17 LYS A 23 AD 7 TRP A 35 ? ASN A 36 ? TRP A 32 ASN A 33 AE 1 THR A 147 ? VAL A 156 ? THR A 144 VAL A 153 AE 2 LYS A 135 ? GLN A 143 ? LYS A 132 GLN A 140 AE 3 HIS A 68 ? PHE A 77 ? HIS A 65 PHE A 74 AE 4 LEU A 83 ? THR A 91 ? LEU A 80 THR A 88 AE 5 SER A 7 ? LEU A 16 ? SER A 4 LEU A 13 AE 6 PHE A 38 ? LYS A 41 ? PHE A 35 LYS A 38 AF 1 THR A 63 ? VAL A 64 ? THR A 60 VAL A 61 AF 2 ILE A 94 ? GLN A 95 ? ILE A 91 GLN A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASN A 36 ? N ASN A 33 O GLY A 24 ? O GLY A 21 AB 1 2 N GLY A 40 ? N GLY A 37 O THR A 11 ? O THR A 8 AC 1 2 N PHE A 109 ? N PHE A 106 O VAL A 21 ? O VAL A 18 AD 1 2 N VAL A 156 ? N VAL A 153 O LYS A 135 ? O LYS A 132 AD 2 3 N PHE A 136 ? N PHE A 133 O VAL A 70 ? O VAL A 67 AD 3 4 N PHE A 75 ? N PHE A 72 O MET A 84 ? O MET A 81 AD 4 5 N ASP A 85 ? N ASP A 82 O ARG A 8 ? O ARG A 5 AD 5 6 N VAL A 15 ? N VAL A 12 O LEU A 22 ? O LEU A 19 AD 6 7 N GLY A 24 ? N GLY A 21 O ASN A 36 ? O ASN A 33 AE 1 2 N VAL A 156 ? N VAL A 153 O LYS A 135 ? O LYS A 132 AE 2 3 N PHE A 136 ? N PHE A 133 O VAL A 70 ? O VAL A 67 AE 3 4 N PHE A 75 ? N PHE A 72 O MET A 84 ? O MET A 81 AE 4 5 N ASP A 85 ? N ASP A 82 O ARG A 8 ? O ARG A 5 AE 5 6 N VAL A 13 ? N VAL A 10 O PHE A 38 ? O PHE A 35 AF 1 2 N THR A 63 ? N THR A 60 O GLN A 95 ? O GLN A 92 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 19 'BINDING SITE FOR RESIDUE H6Y A 1157' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ACT A 1158' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 TYR A 10 ? TYR A 7 . ? 1_555 ? 2 AC1 19 PHE A 30 ? PHE A 27 . ? 1_555 ? 3 AC1 19 ASN A 36 ? ASN A 33 . ? 1_555 ? 4 AC1 19 GLY A 39 ? GLY A 36 . ? 1_555 ? 5 AC1 19 GLY A 40 ? GLY A 37 . ? 1_555 ? 6 AC1 19 LYS A 41 ? LYS A 38 . ? 1_555 ? 7 AC1 19 GLU A 55 ? GLU A 52 . ? 1_555 ? 8 AC1 19 GLU A 59 ? GLU A 56 . ? 1_555 ? 9 AC1 19 PHE A 75 ? PHE A 72 . ? 1_555 ? 10 AC1 19 MET A 84 ? MET A 81 . ? 1_555 ? 11 AC1 19 TRP A 120 ? TRP A 117 . ? 1_555 ? 12 AC1 19 ASP A 122 ? ASP A 119 . ? 1_555 ? 13 AC1 19 ASP A 123 ? ASP A 120 . ? 1_555 ? 14 AC1 19 ACT C . ? ACT A 1158 . ? 1_555 ? 15 AC1 19 HOH D . ? HOH A 2013 . ? 1_555 ? 16 AC1 19 HOH D . ? HOH A 2018 . ? 1_555 ? 17 AC1 19 HOH D . ? HOH A 2023 . ? 1_555 ? 18 AC1 19 HOH D . ? HOH A 2034 . ? 1_555 ? 19 AC1 19 HOH D . ? HOH A 2074 . ? 1_555 ? 20 AC2 7 LEU A 12 ? LEU A 9 . ? 1_555 ? 21 AC2 7 ASN A 36 ? ASN A 33 . ? 1_555 ? 22 AC2 7 GLY A 37 ? GLY A 34 . ? 1_555 ? 23 AC2 7 ASP A 123 ? ASP A 120 . ? 1_555 ? 24 AC2 7 TRP A 126 ? TRP A 123 . ? 1_555 ? 25 AC2 7 PHE A 127 ? PHE A 124 . ? 1_555 ? 26 AC2 7 H6Y B . ? H6Y A 1157 . ? 1_555 ? # _database_PDB_matrix.entry_id 5FSK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5FSK _atom_sites.fract_transf_matrix[1][1] 0.016530 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015242 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027512 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 GLY 5 2 ? ? ? A . n A 1 6 ALA 6 3 3 ALA ALA A . n A 1 7 SER 7 4 4 SER SER A . n A 1 8 ARG 8 5 5 ARG ARG A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 TYR 10 7 7 TYR TYR A . n A 1 11 THR 11 8 8 THR THR A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 VAL 13 10 10 VAL VAL A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 VAL 15 12 12 VAL VAL A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 GLN 17 14 14 GLN GLN A . n A 1 18 PRO 18 15 15 PRO PRO A . n A 1 19 GLN 19 16 16 GLN GLN A . n A 1 20 ARG 20 17 17 ARG ARG A . n A 1 21 VAL 21 18 18 VAL VAL A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 MET 25 22 22 MET MET A . n A 1 26 LYS 26 23 23 LYS LYS A . n A 1 27 LYS 27 24 24 LYS LYS A . n A 1 28 ARG 28 25 25 ARG ARG A . n A 1 29 GLY 29 26 26 GLY GLY A . n A 1 30 PHE 30 27 27 PHE PHE A . n A 1 31 GLY 31 28 28 GLY GLY A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 GLY 33 30 30 GLY GLY A . n A 1 34 ARG 34 31 31 ARG ARG A . n A 1 35 TRP 35 32 32 TRP TRP A . n A 1 36 ASN 36 33 33 ASN ASN A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 PHE 38 35 35 PHE PHE A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 LYS 41 38 38 LYS LYS A . n A 1 42 VAL 42 39 39 VAL VAL A . n A 1 43 GLN 43 40 40 GLN GLN A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 GLU 46 43 43 GLU GLU A . n A 1 47 THR 47 44 44 THR THR A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 GLU 49 46 46 GLU GLU A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 ALA 52 49 49 ALA ALA A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 ARG 54 51 51 ARG ARG A . n A 1 55 GLU 55 52 52 GLU GLU A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 GLN 57 54 54 GLN GLN A . n A 1 58 GLU 58 55 55 GLU GLU A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 GLY 61 58 58 GLY GLY A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 THR 63 60 60 THR THR A . n A 1 64 VAL 64 61 61 VAL VAL A . n A 1 65 ASP 65 62 62 ASP ASP A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 HIS 68 65 65 HIS HIS A . n A 1 69 LYS 69 66 66 LYS LYS A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 GLN 72 69 69 GLN GLN A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 GLU 76 73 73 GLU GLU A . n A 1 77 PHE 77 74 74 PHE PHE A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 GLY 79 76 76 GLY GLY A . n A 1 80 GLU 80 77 77 GLU GLU A . n A 1 81 PRO 81 78 78 PRO PRO A . n A 1 82 GLU 82 79 79 GLU GLU A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 MET 84 81 81 MET MET A . n A 1 85 ASP 85 82 82 ASP ASP A . n A 1 86 VAL 86 83 83 VAL VAL A . n A 1 87 HIS 87 84 84 HIS HIS A . n A 1 88 VAL 88 85 85 VAL VAL A . n A 1 89 PHE 89 86 86 PHE PHE A . n A 1 90 CYS 90 87 87 CYS CYS A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 ASP 92 89 89 ASP ASP A . n A 1 93 SER 93 90 90 SER SER A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 GLN 95 92 92 GLN GLN A . n A 1 96 GLY 96 93 93 GLY GLY A . n A 1 97 THR 97 94 94 THR THR A . n A 1 98 PRO 98 95 95 PRO PRO A . n A 1 99 VAL 99 96 96 VAL VAL A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 SER 101 98 98 SER SER A . n A 1 102 ASP 102 99 99 ASP ASP A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 MET 104 101 101 MET MET A . n A 1 105 ARG 105 102 102 ARG ARG A . n A 1 106 PRO 106 103 103 PRO PRO A . n A 1 107 CYS 107 104 104 CYS CYS A . n A 1 108 TRP 108 105 105 TRP TRP A . n A 1 109 PHE 109 106 106 PHE PHE A . n A 1 110 GLN 110 107 107 GLN GLN A . n A 1 111 LEU 111 108 108 LEU LEU A . n A 1 112 ASP 112 109 109 ASP ASP A . n A 1 113 GLN 113 110 110 GLN GLN A . n A 1 114 ILE 114 111 111 ILE ILE A . n A 1 115 PRO 115 112 112 PRO PRO A . n A 1 116 PHE 116 113 113 PHE PHE A . n A 1 117 LYS 117 114 114 LYS LYS A . n A 1 118 ASP 118 115 115 ASP ASP A . n A 1 119 MET 119 116 116 MET MET A . n A 1 120 TRP 120 117 117 TRP TRP A . n A 1 121 PRO 121 118 118 PRO PRO A . n A 1 122 ASP 122 119 119 ASP ASP A . n A 1 123 ASP 123 120 120 ASP ASP A . n A 1 124 SER 124 121 121 SER SER A . n A 1 125 TYR 125 122 122 TYR TYR A . n A 1 126 TRP 126 123 123 TRP TRP A . n A 1 127 PHE 127 124 124 PHE PHE A . n A 1 128 PRO 128 125 125 PRO PRO A . n A 1 129 LEU 129 126 126 LEU LEU A . n A 1 130 LEU 130 127 127 LEU LEU A . n A 1 131 LEU 131 128 128 LEU LEU A . n A 1 132 GLN 132 129 129 GLN GLN A . n A 1 133 LYS 133 130 130 LYS LYS A . n A 1 134 LYS 134 131 131 LYS LYS A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 PHE 136 133 133 PHE PHE A . n A 1 137 HIS 137 134 134 HIS HIS A . n A 1 138 GLY 138 135 135 GLY GLY A . n A 1 139 TYR 139 136 136 TYR TYR A . n A 1 140 PHE 140 137 137 PHE PHE A . n A 1 141 LYS 141 138 138 LYS LYS A . n A 1 142 PHE 142 139 139 PHE PHE A . n A 1 143 GLN 143 140 140 GLN GLN A . n A 1 144 GLY 144 141 141 GLY GLY A . n A 1 145 GLN 145 142 142 GLN GLN A . n A 1 146 ASP 146 143 143 ASP ASP A . n A 1 147 THR 147 144 144 THR THR A . n A 1 148 ILE 148 145 145 ILE ILE A . n A 1 149 LEU 149 146 146 LEU LEU A . n A 1 150 ASP 150 147 147 ASP ASP A . n A 1 151 TYR 151 148 148 TYR TYR A . n A 1 152 THR 152 149 149 THR THR A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 ARG 154 151 151 ARG ARG A . n A 1 155 GLU 155 152 152 GLU GLU A . n A 1 156 VAL 156 153 153 VAL VAL A . n A 1 157 ASP 157 154 154 ASP ASP A . n A 1 158 THR 158 155 155 THR THR A . n A 1 159 VAL 159 156 156 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H6Y 1 1157 1157 H6Y H6Y A . C 3 ACT 1 1158 1158 ACT ACT A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-07-20 2 'Structure model' 1 1 2017-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other 3 2 'Structure model' 'Refinement description' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 14.3546 _pdbx_refine_tls.origin_y 19.3266 _pdbx_refine_tls.origin_z 9.4269 _pdbx_refine_tls.T[1][1] -0.0295 _pdbx_refine_tls.T[2][2] -0.0167 _pdbx_refine_tls.T[3][3] -0.0413 _pdbx_refine_tls.T[1][2] 0.0119 _pdbx_refine_tls.T[1][3] -0.0061 _pdbx_refine_tls.T[2][3] 0.0070 _pdbx_refine_tls.L[1][1] 1.1021 _pdbx_refine_tls.L[2][2] 1.2659 _pdbx_refine_tls.L[3][3] 0.9445 _pdbx_refine_tls.L[1][2] 0.4531 _pdbx_refine_tls.L[1][3] 0.1617 _pdbx_refine_tls.L[2][3] -0.0791 _pdbx_refine_tls.S[1][1] 0.0449 _pdbx_refine_tls.S[1][2] 0.0063 _pdbx_refine_tls.S[1][3] -0.0602 _pdbx_refine_tls.S[2][1] 0.0425 _pdbx_refine_tls.S[2][2] 0.0386 _pdbx_refine_tls.S[2][3] 0.0063 _pdbx_refine_tls.S[3][1] -0.0355 _pdbx_refine_tls.S[3][2] -0.0340 _pdbx_refine_tls.S[3][3] -0.0835 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{ A|* }' # _software.name BUSTER _software.classification refinement _software.version 2.11.6 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 62 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -101.15 _pdbx_validate_torsion.psi -78.35 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 5 ? NE ? A ARG 8 NE 2 1 Y 1 A ARG 5 ? CZ ? A ARG 8 CZ 3 1 Y 1 A ARG 5 ? NH1 ? A ARG 8 NH1 4 1 Y 1 A ARG 5 ? NH2 ? A ARG 8 NH2 5 1 Y 1 A GLN 16 ? CG ? A GLN 19 CG 6 1 Y 1 A GLN 16 ? CD ? A GLN 19 CD 7 1 Y 1 A GLN 16 ? OE1 ? A GLN 19 OE1 8 1 Y 1 A GLN 16 ? NE2 ? A GLN 19 NE2 9 1 Y 1 A LYS 23 ? CE ? A LYS 26 CE 10 1 Y 1 A LYS 23 ? NZ ? A LYS 26 NZ 11 1 Y 1 A ARG 25 ? CG ? A ARG 28 CG 12 1 Y 1 A ARG 25 ? CD ? A ARG 28 CD 13 1 Y 1 A ARG 25 ? NE ? A ARG 28 NE 14 1 Y 1 A ARG 25 ? CZ ? A ARG 28 CZ 15 1 Y 1 A ARG 25 ? NH1 ? A ARG 28 NH1 16 1 Y 1 A ARG 25 ? NH2 ? A ARG 28 NH2 17 1 Y 1 A PHE 27 ? CG ? A PHE 30 CG 18 1 Y 1 A PHE 27 ? CD1 ? A PHE 30 CD1 19 1 Y 1 A PHE 27 ? CD2 ? A PHE 30 CD2 20 1 Y 1 A PHE 27 ? CE1 ? A PHE 30 CE1 21 1 Y 1 A PHE 27 ? CE2 ? A PHE 30 CE2 22 1 Y 1 A PHE 27 ? CZ ? A PHE 30 CZ 23 1 Y 1 A LYS 38 ? NZ ? A LYS 41 NZ 24 1 Y 1 A GLU 41 ? CD ? A GLU 44 CD 25 1 Y 1 A GLU 41 ? OE1 ? A GLU 44 OE1 26 1 Y 1 A GLU 41 ? OE2 ? A GLU 44 OE2 27 1 Y 1 A ASP 62 ? CG ? A ASP 65 CG 28 1 Y 1 A ASP 62 ? OD1 ? A ASP 65 OD1 29 1 Y 1 A ASP 62 ? OD2 ? A ASP 65 OD2 30 1 Y 1 A LYS 66 ? CE ? A LYS 69 CE 31 1 Y 1 A LYS 66 ? NZ ? A LYS 69 NZ 32 1 Y 1 A GLU 79 ? CG ? A GLU 82 CG 33 1 Y 1 A GLU 79 ? CD ? A GLU 82 CD 34 1 Y 1 A GLU 79 ? OE1 ? A GLU 82 OE1 35 1 Y 1 A GLU 79 ? OE2 ? A GLU 82 OE2 36 1 Y 1 A ASP 89 ? CG ? A ASP 92 CG 37 1 Y 1 A ASP 89 ? OD1 ? A ASP 92 OD1 38 1 Y 1 A ASP 89 ? OD2 ? A ASP 92 OD2 39 1 Y 1 A GLU 100 ? CG ? A GLU 103 CG 40 1 Y 1 A GLU 100 ? CD ? A GLU 103 CD 41 1 Y 1 A GLU 100 ? OE1 ? A GLU 103 OE1 42 1 Y 1 A GLU 100 ? OE2 ? A GLU 103 OE2 43 1 Y 1 A LYS 114 ? CG ? A LYS 117 CG 44 1 Y 1 A LYS 114 ? CD ? A LYS 117 CD 45 1 Y 1 A LYS 114 ? CE ? A LYS 117 CE 46 1 Y 1 A LYS 114 ? NZ ? A LYS 117 NZ 47 1 Y 1 A LYS 130 ? CD ? A LYS 133 CD 48 1 Y 1 A LYS 130 ? CE ? A LYS 133 CE 49 1 Y 1 A LYS 130 ? NZ ? A LYS 133 NZ 50 1 Y 1 A LYS 131 ? CE ? A LYS 134 CE 51 1 Y 1 A LYS 131 ? NZ ? A LYS 134 NZ 52 1 Y 1 A LYS 132 ? CE ? A LYS 135 CE 53 1 Y 1 A LYS 132 ? NZ ? A LYS 135 NZ 54 1 Y 1 A LYS 138 ? NZ ? A LYS 141 NZ 55 1 Y 1 A ASP 147 ? OD1 ? A ASP 150 OD1 56 1 Y 1 A ASP 147 ? OD2 ? A ASP 150 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A GLY 2 ? A GLY 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "8-OXO-ADENOSINE-5'-TRIPHOSPHATE" H6Y 3 'ACETATE ION' ACT 4 water HOH #