data_5FUB # _entry.id 5FUB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.307 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5FUB PDBE EBI-66086 WWPDB D_1290066086 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 5FUL _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF A METHYLTRANSFERASE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5FUB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2016-01-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cura, V.' 1 'Troffer-Charlier, N.' 2 'Marechal, N.' 3 'Bonnefond, L.' 4 'Cavarelli, J.' 5 # _citation.id primary _citation.title 'Structural studies of protein arginine methyltransferase 2 reveal its interactions with potential substrates and inhibitors.' _citation.journal_abbrev 'FEBS J.' _citation.journal_volume 284 _citation.page_first 77 _citation.page_last 96 _citation.year 2017 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-4658 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27879050 _citation.pdbx_database_id_DOI 10.1111/febs.13953 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cura, V.' 1 ? primary 'Marechal, N.' 2 ? primary 'Troffer-Charlier, N.' 3 ? primary 'Strub, J.M.' 4 ? primary 'van Haren, M.J.' 5 ? primary 'Martin, N.I.' 6 ? primary 'Cianferani, S.' 7 ? primary 'Bonnefond, L.' 8 ? primary 'Cavarelli, J.' 9 ? # _cell.entry_id 5FUB _cell.length_a 147.070 _cell.length_b 147.070 _cell.length_c 127.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FUB _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN ARGININE METHYLTRANSFERASE 2' 38376.770 1 2.1.1.125 ? 'CATALYTIC MODULE, UNP RESIDUES 73-408' ? 2 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? 3 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 7 water nat water 18.015 181 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GDAWQDDEYFGNYGTLRLHLEMLSDKPRTETYRQVILSNSAALREKVVLDLGCGTGVISLFCALLAKPAGVYAVEASSMA EHTEELVKQNGCDGVVTVFQERAENLTLPTKVDVLVSEWMGNCLLFEYMLESVLLARDRWLKKGGMMWPSSACLTIVPCQ AFSDYRQKVEFWENPYGLNFSYLQSLAQKEFLSKPKFSHHLQPEDCLSTPADVITLDMVTIQVSDLERLKGEFTFTVEKS GMFHGFTVWFSAHFQCLEEDGPSIELNTGPYSEITHWKQTLFMLDAPVSVEEGDIIAGSIRLQRNPIWRRHLSITFLWNI NSTEVSTVKTKCFPMWR ; _entity_poly.pdbx_seq_one_letter_code_can ;GDAWQDDEYFGNYGTLRLHLEMLSDKPRTETYRQVILSNSAALREKVVLDLGCGTGVISLFCALLAKPAGVYAVEASSMA EHTEELVKQNGCDGVVTVFQERAENLTLPTKVDVLVSEWMGNCLLFEYMLESVLLARDRWLKKGGMMWPSSACLTIVPCQ AFSDYRQKVEFWENPYGLNFSYLQSLAQKEFLSKPKFSHHLQPEDCLSTPADVITLDMVTIQVSDLERLKGEFTFTVEKS GMFHGFTVWFSAHFQCLEEDGPSIELNTGPYSEITHWKQTLFMLDAPVSVEEGDIIAGSIRLQRNPIWRRHLSITFLWNI NSTEVSTVKTKCFPMWR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 ALA n 1 4 TRP n 1 5 GLN n 1 6 ASP n 1 7 ASP n 1 8 GLU n 1 9 TYR n 1 10 PHE n 1 11 GLY n 1 12 ASN n 1 13 TYR n 1 14 GLY n 1 15 THR n 1 16 LEU n 1 17 ARG n 1 18 LEU n 1 19 HIS n 1 20 LEU n 1 21 GLU n 1 22 MET n 1 23 LEU n 1 24 SER n 1 25 ASP n 1 26 LYS n 1 27 PRO n 1 28 ARG n 1 29 THR n 1 30 GLU n 1 31 THR n 1 32 TYR n 1 33 ARG n 1 34 GLN n 1 35 VAL n 1 36 ILE n 1 37 LEU n 1 38 SER n 1 39 ASN n 1 40 SER n 1 41 ALA n 1 42 ALA n 1 43 LEU n 1 44 ARG n 1 45 GLU n 1 46 LYS n 1 47 VAL n 1 48 VAL n 1 49 LEU n 1 50 ASP n 1 51 LEU n 1 52 GLY n 1 53 CYS n 1 54 GLY n 1 55 THR n 1 56 GLY n 1 57 VAL n 1 58 ILE n 1 59 SER n 1 60 LEU n 1 61 PHE n 1 62 CYS n 1 63 ALA n 1 64 LEU n 1 65 LEU n 1 66 ALA n 1 67 LYS n 1 68 PRO n 1 69 ALA n 1 70 GLY n 1 71 VAL n 1 72 TYR n 1 73 ALA n 1 74 VAL n 1 75 GLU n 1 76 ALA n 1 77 SER n 1 78 SER n 1 79 MET n 1 80 ALA n 1 81 GLU n 1 82 HIS n 1 83 THR n 1 84 GLU n 1 85 GLU n 1 86 LEU n 1 87 VAL n 1 88 LYS n 1 89 GLN n 1 90 ASN n 1 91 GLY n 1 92 CYS n 1 93 ASP n 1 94 GLY n 1 95 VAL n 1 96 VAL n 1 97 THR n 1 98 VAL n 1 99 PHE n 1 100 GLN n 1 101 GLU n 1 102 ARG n 1 103 ALA n 1 104 GLU n 1 105 ASN n 1 106 LEU n 1 107 THR n 1 108 LEU n 1 109 PRO n 1 110 THR n 1 111 LYS n 1 112 VAL n 1 113 ASP n 1 114 VAL n 1 115 LEU n 1 116 VAL n 1 117 SER n 1 118 GLU n 1 119 TRP n 1 120 MET n 1 121 GLY n 1 122 ASN n 1 123 CYS n 1 124 LEU n 1 125 LEU n 1 126 PHE n 1 127 GLU n 1 128 TYR n 1 129 MET n 1 130 LEU n 1 131 GLU n 1 132 SER n 1 133 VAL n 1 134 LEU n 1 135 LEU n 1 136 ALA n 1 137 ARG n 1 138 ASP n 1 139 ARG n 1 140 TRP n 1 141 LEU n 1 142 LYS n 1 143 LYS n 1 144 GLY n 1 145 GLY n 1 146 MET n 1 147 MET n 1 148 TRP n 1 149 PRO n 1 150 SER n 1 151 SER n 1 152 ALA n 1 153 CYS n 1 154 LEU n 1 155 THR n 1 156 ILE n 1 157 VAL n 1 158 PRO n 1 159 CYS n 1 160 GLN n 1 161 ALA n 1 162 PHE n 1 163 SER n 1 164 ASP n 1 165 TYR n 1 166 ARG n 1 167 GLN n 1 168 LYS n 1 169 VAL n 1 170 GLU n 1 171 PHE n 1 172 TRP n 1 173 GLU n 1 174 ASN n 1 175 PRO n 1 176 TYR n 1 177 GLY n 1 178 LEU n 1 179 ASN n 1 180 PHE n 1 181 SER n 1 182 TYR n 1 183 LEU n 1 184 GLN n 1 185 SER n 1 186 LEU n 1 187 ALA n 1 188 GLN n 1 189 LYS n 1 190 GLU n 1 191 PHE n 1 192 LEU n 1 193 SER n 1 194 LYS n 1 195 PRO n 1 196 LYS n 1 197 PHE n 1 198 SER n 1 199 HIS n 1 200 HIS n 1 201 LEU n 1 202 GLN n 1 203 PRO n 1 204 GLU n 1 205 ASP n 1 206 CYS n 1 207 LEU n 1 208 SER n 1 209 THR n 1 210 PRO n 1 211 ALA n 1 212 ASP n 1 213 VAL n 1 214 ILE n 1 215 THR n 1 216 LEU n 1 217 ASP n 1 218 MET n 1 219 VAL n 1 220 THR n 1 221 ILE n 1 222 GLN n 1 223 VAL n 1 224 SER n 1 225 ASP n 1 226 LEU n 1 227 GLU n 1 228 ARG n 1 229 LEU n 1 230 LYS n 1 231 GLY n 1 232 GLU n 1 233 PHE n 1 234 THR n 1 235 PHE n 1 236 THR n 1 237 VAL n 1 238 GLU n 1 239 LYS n 1 240 SER n 1 241 GLY n 1 242 MET n 1 243 PHE n 1 244 HIS n 1 245 GLY n 1 246 PHE n 1 247 THR n 1 248 VAL n 1 249 TRP n 1 250 PHE n 1 251 SER n 1 252 ALA n 1 253 HIS n 1 254 PHE n 1 255 GLN n 1 256 CYS n 1 257 LEU n 1 258 GLU n 1 259 GLU n 1 260 ASP n 1 261 GLY n 1 262 PRO n 1 263 SER n 1 264 ILE n 1 265 GLU n 1 266 LEU n 1 267 ASN n 1 268 THR n 1 269 GLY n 1 270 PRO n 1 271 TYR n 1 272 SER n 1 273 GLU n 1 274 ILE n 1 275 THR n 1 276 HIS n 1 277 TRP n 1 278 LYS n 1 279 GLN n 1 280 THR n 1 281 LEU n 1 282 PHE n 1 283 MET n 1 284 LEU n 1 285 ASP n 1 286 ALA n 1 287 PRO n 1 288 VAL n 1 289 SER n 1 290 VAL n 1 291 GLU n 1 292 GLU n 1 293 GLY n 1 294 ASP n 1 295 ILE n 1 296 ILE n 1 297 ALA n 1 298 GLY n 1 299 SER n 1 300 ILE n 1 301 ARG n 1 302 LEU n 1 303 GLN n 1 304 ARG n 1 305 ASN n 1 306 PRO n 1 307 ILE n 1 308 TRP n 1 309 ARG n 1 310 ARG n 1 311 HIS n 1 312 LEU n 1 313 SER n 1 314 ILE n 1 315 THR n 1 316 PHE n 1 317 LEU n 1 318 TRP n 1 319 ASN n 1 320 ILE n 1 321 ASN n 1 322 SER n 1 323 THR n 1 324 GLU n 1 325 VAL n 1 326 SER n 1 327 THR n 1 328 VAL n 1 329 LYS n 1 330 THR n 1 331 LYS n 1 332 CYS n 1 333 PHE n 1 334 PRO n 1 335 MET n 1 336 TRP n 1 337 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ZEBRAFISH _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'DANIO RERIO' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'FALL ARMYWORM' _entity_src_gen.pdbx_host_org_scientific_name 'SPODOPTERA FRUGIPERDA' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line Sf21 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDEST20 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'BIOSCIENCE IRAK293-C16' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1L1Q4_DANRE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A1L1Q4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5FUB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 337 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A1L1Q4 _struct_ref_seq.db_align_beg 73 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 408 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 73 _struct_ref_seq.pdbx_auth_seq_align_end 408 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5FUB _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A1L1Q4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 72 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5FUB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.42 _exptl_crystal.density_percent_sol 64 _exptl_crystal.description 'STARTING MODEL GENERATED BY BALBES' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '9% PEG 20000, 300MM NACL,100MM MES PH 6.0 AND FOR CRYO IS 10% PEG 20000, 300MM NACL,100MM MES PH 6.0, 15% ETHYLENE GLYCOL' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2014-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9801 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 2' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 2' _diffrn_source.pdbx_wavelength 0.9801 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5FUB _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 38.40 _reflns.d_resolution_high 2.00 _reflns.number_obs 35917 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.20 _reflns.B_iso_Wilson_estimate 35.3 _reflns.pdbx_redundancy 5.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.00 _reflns_shell.pdbx_redundancy 5.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5FUB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 35917 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.405 _refine.ls_d_res_high 1.997 _refine.ls_percent_reflns_obs 99.89 _refine.ls_R_factor_obs 0.1834 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1817 _refine.ls_R_factor_R_free 0.2175 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1810 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.6 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.25 _refine.pdbx_overall_phase_error 22.60 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2696 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 2934 _refine_hist.d_res_high 1.997 _refine_hist.d_res_low 38.405 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2818 'X-RAY DIFFRACTION' ? f_angle_d 0.603 ? ? 3817 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.931 ? ? 1646 'X-RAY DIFFRACTION' ? f_chiral_restr 0.043 ? ? 421 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 479 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.9971 2.0511 2620 0.3136 100.00 0.3144 . . 122 . . 'X-RAY DIFFRACTION' . 2.0511 2.1114 2627 0.2766 100.00 0.2982 . . 124 . . 'X-RAY DIFFRACTION' . 2.1114 2.1796 2607 0.2617 100.00 0.2561 . . 126 . . 'X-RAY DIFFRACTION' . 2.1796 2.2575 2589 0.2445 100.00 0.3092 . . 172 . . 'X-RAY DIFFRACTION' . 2.2575 2.3478 2597 0.2287 100.00 0.2667 . . 122 . . 'X-RAY DIFFRACTION' . 2.3478 2.4547 2621 0.2212 100.00 0.2721 . . 145 . . 'X-RAY DIFFRACTION' . 2.4547 2.5841 2602 0.2201 100.00 0.2381 . . 138 . . 'X-RAY DIFFRACTION' . 2.5841 2.7459 2593 0.2001 100.00 0.2541 . . 162 . . 'X-RAY DIFFRACTION' . 2.7459 2.9579 2617 0.1897 100.00 0.2135 . . 140 . . 'X-RAY DIFFRACTION' . 2.9579 3.2554 2623 0.1891 100.00 0.2403 . . 155 . . 'X-RAY DIFFRACTION' . 3.2554 3.7261 2634 0.1659 100.00 0.2174 . . 147 . . 'X-RAY DIFFRACTION' . 3.7261 4.6932 2658 0.1370 100.00 0.1568 . . 137 . . 'X-RAY DIFFRACTION' . 4.6932 38.4121 2719 0.1484 99.00 0.1739 . . 120 . . # _struct.entry_id 5FUB _struct.title 'Crystal Structure of zebrafish Protein Arginine Methyltransferase 2 catalytic domain with SAH' _struct.pdbx_descriptor 'PROTEIN ARGININE METHYLTRANSFERASE 2 (E.C.2.1.1.125)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5FUB _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, S-ADENOSYL-L-CYSTEINE, S-ADENOSYL-L-HOMOCYSTEINE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 5 ? K N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 5 ? TYR A 13 ? GLN A 76 TYR A 84 1 ? 9 HELX_P HELX_P2 2 THR A 15 ? ASP A 25 ? THR A 86 ASP A 96 1 ? 11 HELX_P HELX_P3 3 ASP A 25 ? ASN A 39 ? ASP A 96 ASN A 110 1 ? 15 HELX_P HELX_P4 4 SER A 40 ? ARG A 44 ? SER A 111 ARG A 115 5 ? 5 HELX_P HELX_P5 5 GLY A 56 ? ALA A 66 ? GLY A 127 ALA A 137 1 ? 11 HELX_P HELX_P6 6 SER A 78 ? ASN A 90 ? SER A 149 ASN A 161 1 ? 13 HELX_P HELX_P7 7 ARG A 102 ? LEU A 106 ? ARG A 173 LEU A 177 5 ? 5 HELX_P HELX_P8 8 TYR A 128 ? TRP A 140 ? TYR A 199 TRP A 211 1 ? 13 HELX_P HELX_P9 9 ALA A 161 ? VAL A 169 ? ALA A 232 VAL A 240 1 ? 9 HELX_P HELX_P10 10 GLU A 170 ? ASN A 174 ? GLU A 241 ASN A 245 5 ? 5 HELX_P HELX_P11 11 ASN A 174 ? LEU A 178 ? ASN A 245 LEU A 249 5 ? 5 HELX_P HELX_P12 12 PHE A 180 ? TYR A 182 ? PHE A 251 TYR A 253 5 ? 3 HELX_P HELX_P13 13 LEU A 183 ? SER A 193 ? LEU A 254 SER A 264 1 ? 11 HELX_P HELX_P14 14 GLN A 202 ? ASP A 205 ? GLN A 273 ASP A 276 5 ? 4 HELX_P HELX_P15 15 GLN A 222 ? LEU A 226 ? GLN A 293 LEU A 297 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? E NA . NA ? ? ? 1_555 A GLU 84 OE1 ? ? A NA 1410 A GLU 155 1_555 ? ? ? ? ? ? ? 2.490 ? metalc2 metalc ? ? J NA . NA ? ? ? 1_555 A ASP 212 OD2 ? ? A NA 1415 A ASP 283 1_555 ? ? ? ? ? ? ? 2.513 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TRP _struct_mon_prot_cis.label_seq_id 148 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TRP _struct_mon_prot_cis.auth_seq_id 219 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 149 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 220 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.62 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 4 ? AC ? 5 ? AD ? 2 ? AE ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? anti-parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 96 ? PHE A 99 ? VAL A 167 PHE A 170 AA 2 GLY A 70 ? VAL A 74 ? GLY A 141 VAL A 145 AA 3 VAL A 47 ? LEU A 51 ? VAL A 118 LEU A 122 AA 4 VAL A 112 ? SER A 117 ? VAL A 183 SER A 188 AA 5 LEU A 141 ? TRP A 148 ? LEU A 212 TRP A 219 AB 1 LYS A 196 ? HIS A 199 ? LYS A 267 HIS A 270 AB 2 GLN A 279 ? VAL A 290 ? GLN A 350 VAL A 361 AB 3 GLY A 241 ? PHE A 254 ? GLY A 312 PHE A 325 AB 4 ILE A 264 ? ASN A 267 ? ILE A 335 ASN A 338 AC 1 LYS A 196 ? HIS A 199 ? LYS A 267 HIS A 270 AC 2 GLN A 279 ? VAL A 290 ? GLN A 350 VAL A 361 AC 3 GLY A 241 ? PHE A 254 ? GLY A 312 PHE A 325 AC 4 SER A 151 ? CYS A 159 ? SER A 222 CYS A 230 AC 5 ALA A 211 ? ASP A 217 ? ALA A 282 ASP A 288 AD 1 ILE A 264 ? ASN A 267 ? ILE A 335 ASN A 338 AD 2 GLY A 241 ? PHE A 254 ? GLY A 312 PHE A 325 AE 1 ARG A 228 ? THR A 236 ? ARG A 299 THR A 307 AE 2 ILE A 295 ? ARG A 304 ? ILE A 366 ARG A 375 AE 3 LEU A 312 ? ILE A 320 ? LEU A 383 ILE A 391 AE 4 LYS A 329 ? MET A 335 ? LYS A 400 MET A 406 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N THR A 97 ? N THR A 168 O VAL A 71 ? O VAL A 142 AA 2 3 N TYR A 72 ? N TYR A 143 O VAL A 48 ? O VAL A 119 AA 3 4 O VAL A 47 ? O VAL A 118 N ASP A 113 ? N ASP A 184 AA 4 5 O VAL A 112 ? O VAL A 183 N LYS A 142 ? N LYS A 213 AB 1 2 N HIS A 199 ? N HIS A 270 O GLN A 279 ? O GLN A 350 AB 2 3 N VAL A 290 ? N VAL A 361 O GLY A 241 ? O GLY A 312 AB 3 4 N PHE A 254 ? N PHE A 325 O ILE A 264 ? O ILE A 335 AC 1 2 N HIS A 199 ? N HIS A 270 O GLN A 279 ? O GLN A 350 AC 2 3 N VAL A 290 ? N VAL A 361 O GLY A 241 ? O GLY A 312 AC 3 4 N HIS A 253 ? N HIS A 324 O SER A 151 ? O SER A 222 AC 4 5 N ILE A 156 ? N ILE A 227 O ALA A 211 ? O ALA A 282 AD 1 2 N LEU A 266 ? N LEU A 337 O ALA A 252 ? O ALA A 323 AE 1 2 N PHE A 235 ? N PHE A 306 O ILE A 296 ? O ILE A 367 AE 2 3 N GLN A 303 ? N GLN A 374 O SER A 313 ? O SER A 384 AE 3 4 N TRP A 318 ? N TRP A 389 O LYS A 329 ? O LYS A 400 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 21 'BINDING SITE FOR RESIDUE SAH A 409' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE MES A 417' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 1409' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE NA A 1410' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 1411' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 1412' AC7 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 1413' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 1414' AC9 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE NA A 1415' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 TYR A 9 ? TYR A 80 . ? 1_555 ? 2 AC1 21 PHE A 10 ? PHE A 81 . ? 1_555 ? 3 AC1 21 TYR A 13 ? TYR A 84 . ? 1_555 ? 4 AC1 21 MET A 22 ? MET A 93 . ? 1_555 ? 5 AC1 21 ARG A 28 ? ARG A 99 . ? 1_555 ? 6 AC1 21 GLY A 52 ? GLY A 123 . ? 1_555 ? 7 AC1 21 CYS A 53 ? CYS A 124 . ? 1_555 ? 8 AC1 21 VAL A 57 ? VAL A 128 . ? 1_555 ? 9 AC1 21 ILE A 58 ? ILE A 129 . ? 1_555 ? 10 AC1 21 GLU A 75 ? GLU A 146 . ? 1_555 ? 11 AC1 21 ALA A 76 ? ALA A 147 . ? 1_555 ? 12 AC1 21 GLU A 101 ? GLU A 172 . ? 1_555 ? 13 AC1 21 ARG A 102 ? ARG A 173 . ? 1_555 ? 14 AC1 21 ALA A 103 ? ALA A 174 . ? 1_555 ? 15 AC1 21 GLU A 104 ? GLU A 175 . ? 1_555 ? 16 AC1 21 MET A 129 ? MET A 200 . ? 1_555 ? 17 AC1 21 SER A 132 ? SER A 203 . ? 1_555 ? 18 AC1 21 HOH K . ? HOH A 2016 . ? 1_555 ? 19 AC1 21 HOH K . ? HOH A 2035 . ? 1_555 ? 20 AC1 21 HOH K . ? HOH A 2036 . ? 1_555 ? 21 AC1 21 HOH K . ? HOH A 2076 . ? 1_555 ? 22 AC2 9 ASN A 12 ? ASN A 83 . ? 1_555 ? 23 AC2 9 TYR A 13 ? TYR A 84 . ? 1_555 ? 24 AC2 9 GLY A 121 ? GLY A 192 . ? 1_555 ? 25 AC2 9 ASN A 122 ? ASN A 193 . ? 1_555 ? 26 AC2 9 PHE A 126 ? PHE A 197 . ? 1_555 ? 27 AC2 9 GLU A 127 ? GLU A 198 . ? 1_555 ? 28 AC2 9 ARG A 337 ? ARG A 408 . ? 1_555 ? 29 AC2 9 EDO F . ? EDO A 1411 . ? 1_555 ? 30 AC2 9 HOH K . ? HOH A 2158 . ? 1_555 ? 31 AC3 3 ARG A 33 ? ARG A 104 . ? 1_555 ? 32 AC3 3 TYR A 176 ? TYR A 247 . ? 4_556 ? 33 AC3 3 HOH K . ? HOH A 2024 . ? 1_555 ? 34 AC4 1 GLU A 84 ? GLU A 155 . ? 1_555 ? 35 AC5 2 GLU A 127 ? GLU A 198 . ? 1_555 ? 36 AC5 2 MES C . ? MES A 417 . ? 1_555 ? 37 AC6 5 HIS A 200 ? HIS A 271 . ? 1_555 ? 38 AC6 5 SER A 272 ? SER A 343 . ? 1_555 ? 39 AC6 5 GLU A 273 ? GLU A 344 . ? 1_555 ? 40 AC6 5 ILE A 274 ? ILE A 345 . ? 1_555 ? 41 AC6 5 HOH K . ? HOH A 2180 . ? 1_555 ? 42 AC7 7 GLY A 1 ? GLY A 72 . ? 1_555 ? 43 AC7 7 ASP A 2 ? ASP A 73 . ? 2_555 ? 44 AC7 7 ALA A 3 ? ALA A 74 . ? 2_555 ? 45 AC7 7 ASP A 6 ? ASP A 77 . ? 1_555 ? 46 AC7 7 ASP A 7 ? ASP A 78 . ? 1_555 ? 47 AC7 7 ILE A 307 ? ILE A 378 . ? 2_555 ? 48 AC7 7 HOH K . ? HOH A 2001 . ? 1_555 ? 49 AC8 3 TRP A 249 ? TRP A 320 . ? 1_555 ? 50 AC8 3 ASN A 267 ? ASN A 338 . ? 1_555 ? 51 AC8 3 TYR A 271 ? TYR A 342 . ? 1_555 ? 52 AC9 1 ASP A 212 ? ASP A 283 . ? 1_555 ? # _database_PDB_matrix.entry_id 5FUB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5FUB _atom_sites.fract_transf_matrix[1][1] 0.006799 _atom_sites.fract_transf_matrix[1][2] 0.003926 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007851 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007850 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 72 72 GLY GLY A . n A 1 2 ASP 2 73 73 ASP ASP A . n A 1 3 ALA 3 74 74 ALA ALA A . n A 1 4 TRP 4 75 75 TRP TRP A . n A 1 5 GLN 5 76 76 GLN GLN A . n A 1 6 ASP 6 77 77 ASP ASP A . n A 1 7 ASP 7 78 78 ASP ASP A . n A 1 8 GLU 8 79 79 GLU GLU A . n A 1 9 TYR 9 80 80 TYR TYR A . n A 1 10 PHE 10 81 81 PHE PHE A . n A 1 11 GLY 11 82 82 GLY GLY A . n A 1 12 ASN 12 83 83 ASN ASN A . n A 1 13 TYR 13 84 84 TYR TYR A . n A 1 14 GLY 14 85 85 GLY GLY A . n A 1 15 THR 15 86 86 THR THR A . n A 1 16 LEU 16 87 87 LEU LEU A . n A 1 17 ARG 17 88 88 ARG ARG A . n A 1 18 LEU 18 89 89 LEU LEU A . n A 1 19 HIS 19 90 90 HIS HIS A . n A 1 20 LEU 20 91 91 LEU LEU A . n A 1 21 GLU 21 92 92 GLU GLU A . n A 1 22 MET 22 93 93 MET MET A . n A 1 23 LEU 23 94 94 LEU LEU A . n A 1 24 SER 24 95 95 SER SER A . n A 1 25 ASP 25 96 96 ASP ASP A . n A 1 26 LYS 26 97 97 LYS LYS A . n A 1 27 PRO 27 98 98 PRO PRO A . n A 1 28 ARG 28 99 99 ARG ARG A . n A 1 29 THR 29 100 100 THR THR A . n A 1 30 GLU 30 101 101 GLU GLU A . n A 1 31 THR 31 102 102 THR THR A . n A 1 32 TYR 32 103 103 TYR TYR A . n A 1 33 ARG 33 104 104 ARG ARG A . n A 1 34 GLN 34 105 105 GLN GLN A . n A 1 35 VAL 35 106 106 VAL VAL A . n A 1 36 ILE 36 107 107 ILE ILE A . n A 1 37 LEU 37 108 108 LEU LEU A . n A 1 38 SER 38 109 109 SER SER A . n A 1 39 ASN 39 110 110 ASN ASN A . n A 1 40 SER 40 111 111 SER SER A . n A 1 41 ALA 41 112 112 ALA ALA A . n A 1 42 ALA 42 113 113 ALA ALA A . n A 1 43 LEU 43 114 114 LEU LEU A . n A 1 44 ARG 44 115 115 ARG ARG A . n A 1 45 GLU 45 116 116 GLU GLU A . n A 1 46 LYS 46 117 117 LYS LYS A . n A 1 47 VAL 47 118 118 VAL VAL A . n A 1 48 VAL 48 119 119 VAL VAL A . n A 1 49 LEU 49 120 120 LEU LEU A . n A 1 50 ASP 50 121 121 ASP ASP A . n A 1 51 LEU 51 122 122 LEU LEU A . n A 1 52 GLY 52 123 123 GLY GLY A . n A 1 53 CYS 53 124 124 CYS CYS A . n A 1 54 GLY 54 125 125 GLY GLY A . n A 1 55 THR 55 126 126 THR THR A . n A 1 56 GLY 56 127 127 GLY GLY A . n A 1 57 VAL 57 128 128 VAL VAL A . n A 1 58 ILE 58 129 129 ILE ILE A . n A 1 59 SER 59 130 130 SER SER A . n A 1 60 LEU 60 131 131 LEU LEU A . n A 1 61 PHE 61 132 132 PHE PHE A . n A 1 62 CYS 62 133 133 CYS CYS A . n A 1 63 ALA 63 134 134 ALA ALA A . n A 1 64 LEU 64 135 135 LEU LEU A . n A 1 65 LEU 65 136 136 LEU LEU A . n A 1 66 ALA 66 137 137 ALA ALA A . n A 1 67 LYS 67 138 138 LYS LYS A . n A 1 68 PRO 68 139 139 PRO PRO A . n A 1 69 ALA 69 140 140 ALA ALA A . n A 1 70 GLY 70 141 141 GLY GLY A . n A 1 71 VAL 71 142 142 VAL VAL A . n A 1 72 TYR 72 143 143 TYR TYR A . n A 1 73 ALA 73 144 144 ALA ALA A . n A 1 74 VAL 74 145 145 VAL VAL A . n A 1 75 GLU 75 146 146 GLU GLU A . n A 1 76 ALA 76 147 147 ALA ALA A . n A 1 77 SER 77 148 148 SER SER A . n A 1 78 SER 78 149 149 SER SER A . n A 1 79 MET 79 150 150 MET MET A . n A 1 80 ALA 80 151 151 ALA ALA A . n A 1 81 GLU 81 152 152 GLU GLU A . n A 1 82 HIS 82 153 153 HIS HIS A . n A 1 83 THR 83 154 154 THR THR A . n A 1 84 GLU 84 155 155 GLU GLU A . n A 1 85 GLU 85 156 156 GLU GLU A . n A 1 86 LEU 86 157 157 LEU LEU A . n A 1 87 VAL 87 158 158 VAL VAL A . n A 1 88 LYS 88 159 159 LYS LYS A . n A 1 89 GLN 89 160 160 GLN GLN A . n A 1 90 ASN 90 161 161 ASN ASN A . n A 1 91 GLY 91 162 162 GLY GLY A . n A 1 92 CYS 92 163 163 CYS CYS A . n A 1 93 ASP 93 164 164 ASP ASP A . n A 1 94 GLY 94 165 165 GLY GLY A . n A 1 95 VAL 95 166 166 VAL VAL A . n A 1 96 VAL 96 167 167 VAL VAL A . n A 1 97 THR 97 168 168 THR THR A . n A 1 98 VAL 98 169 169 VAL VAL A . n A 1 99 PHE 99 170 170 PHE PHE A . n A 1 100 GLN 100 171 171 GLN GLN A . n A 1 101 GLU 101 172 172 GLU GLU A . n A 1 102 ARG 102 173 173 ARG ARG A . n A 1 103 ALA 103 174 174 ALA ALA A . n A 1 104 GLU 104 175 175 GLU GLU A . n A 1 105 ASN 105 176 176 ASN ASN A . n A 1 106 LEU 106 177 177 LEU LEU A . n A 1 107 THR 107 178 178 THR THR A . n A 1 108 LEU 108 179 179 LEU LEU A . n A 1 109 PRO 109 180 180 PRO PRO A . n A 1 110 THR 110 181 181 THR THR A . n A 1 111 LYS 111 182 182 LYS LYS A . n A 1 112 VAL 112 183 183 VAL VAL A . n A 1 113 ASP 113 184 184 ASP ASP A . n A 1 114 VAL 114 185 185 VAL VAL A . n A 1 115 LEU 115 186 186 LEU LEU A . n A 1 116 VAL 116 187 187 VAL VAL A . n A 1 117 SER 117 188 188 SER SER A . n A 1 118 GLU 118 189 189 GLU GLU A . n A 1 119 TRP 119 190 190 TRP TRP A . n A 1 120 MET 120 191 191 MET MET A . n A 1 121 GLY 121 192 192 GLY GLY A . n A 1 122 ASN 122 193 193 ASN ASN A . n A 1 123 CYS 123 194 194 CYS CYS A . n A 1 124 LEU 124 195 195 LEU LEU A . n A 1 125 LEU 125 196 196 LEU LEU A . n A 1 126 PHE 126 197 197 PHE PHE A . n A 1 127 GLU 127 198 198 GLU GLU A . n A 1 128 TYR 128 199 199 TYR TYR A . n A 1 129 MET 129 200 200 MET MET A . n A 1 130 LEU 130 201 201 LEU LEU A . n A 1 131 GLU 131 202 202 GLU GLU A . n A 1 132 SER 132 203 203 SER SER A . n A 1 133 VAL 133 204 204 VAL VAL A . n A 1 134 LEU 134 205 205 LEU LEU A . n A 1 135 LEU 135 206 206 LEU LEU A . n A 1 136 ALA 136 207 207 ALA ALA A . n A 1 137 ARG 137 208 208 ARG ARG A . n A 1 138 ASP 138 209 209 ASP ASP A . n A 1 139 ARG 139 210 210 ARG ARG A . n A 1 140 TRP 140 211 211 TRP TRP A . n A 1 141 LEU 141 212 212 LEU LEU A . n A 1 142 LYS 142 213 213 LYS LYS A . n A 1 143 LYS 143 214 214 LYS LYS A . n A 1 144 GLY 144 215 215 GLY GLY A . n A 1 145 GLY 145 216 216 GLY GLY A . n A 1 146 MET 146 217 217 MET MET A . n A 1 147 MET 147 218 218 MET MET A . n A 1 148 TRP 148 219 219 TRP TRP A . n A 1 149 PRO 149 220 220 PRO PRO A . n A 1 150 SER 150 221 221 SER SER A . n A 1 151 SER 151 222 222 SER SER A . n A 1 152 ALA 152 223 223 ALA ALA A . n A 1 153 CYS 153 224 224 CYS CYS A . n A 1 154 LEU 154 225 225 LEU LEU A . n A 1 155 THR 155 226 226 THR THR A . n A 1 156 ILE 156 227 227 ILE ILE A . n A 1 157 VAL 157 228 228 VAL VAL A . n A 1 158 PRO 158 229 229 PRO PRO A . n A 1 159 CYS 159 230 230 CYS CYS A . n A 1 160 GLN 160 231 231 GLN GLN A . n A 1 161 ALA 161 232 232 ALA ALA A . n A 1 162 PHE 162 233 233 PHE PHE A . n A 1 163 SER 163 234 234 SER SER A . n A 1 164 ASP 164 235 235 ASP ASP A . n A 1 165 TYR 165 236 236 TYR TYR A . n A 1 166 ARG 166 237 237 ARG ARG A . n A 1 167 GLN 167 238 238 GLN GLN A . n A 1 168 LYS 168 239 239 LYS LYS A . n A 1 169 VAL 169 240 240 VAL VAL A . n A 1 170 GLU 170 241 241 GLU GLU A . n A 1 171 PHE 171 242 242 PHE PHE A . n A 1 172 TRP 172 243 243 TRP TRP A . n A 1 173 GLU 173 244 244 GLU GLU A . n A 1 174 ASN 174 245 245 ASN ASN A . n A 1 175 PRO 175 246 246 PRO PRO A . n A 1 176 TYR 176 247 247 TYR TYR A . n A 1 177 GLY 177 248 248 GLY GLY A . n A 1 178 LEU 178 249 249 LEU LEU A . n A 1 179 ASN 179 250 250 ASN ASN A . n A 1 180 PHE 180 251 251 PHE PHE A . n A 1 181 SER 181 252 252 SER SER A . n A 1 182 TYR 182 253 253 TYR TYR A . n A 1 183 LEU 183 254 254 LEU LEU A . n A 1 184 GLN 184 255 255 GLN GLN A . n A 1 185 SER 185 256 256 SER SER A . n A 1 186 LEU 186 257 257 LEU LEU A . n A 1 187 ALA 187 258 258 ALA ALA A . n A 1 188 GLN 188 259 259 GLN GLN A . n A 1 189 LYS 189 260 260 LYS LYS A . n A 1 190 GLU 190 261 261 GLU GLU A . n A 1 191 PHE 191 262 262 PHE PHE A . n A 1 192 LEU 192 263 263 LEU LEU A . n A 1 193 SER 193 264 264 SER SER A . n A 1 194 LYS 194 265 265 LYS LYS A . n A 1 195 PRO 195 266 266 PRO PRO A . n A 1 196 LYS 196 267 267 LYS LYS A . n A 1 197 PHE 197 268 268 PHE PHE A . n A 1 198 SER 198 269 269 SER SER A . n A 1 199 HIS 199 270 270 HIS HIS A . n A 1 200 HIS 200 271 271 HIS HIS A . n A 1 201 LEU 201 272 272 LEU LEU A . n A 1 202 GLN 202 273 273 GLN GLN A . n A 1 203 PRO 203 274 274 PRO PRO A . n A 1 204 GLU 204 275 275 GLU GLU A . n A 1 205 ASP 205 276 276 ASP ASP A . n A 1 206 CYS 206 277 277 CYS CYS A . n A 1 207 LEU 207 278 278 LEU LEU A . n A 1 208 SER 208 279 279 SER SER A . n A 1 209 THR 209 280 280 THR THR A . n A 1 210 PRO 210 281 281 PRO PRO A . n A 1 211 ALA 211 282 282 ALA ALA A . n A 1 212 ASP 212 283 283 ASP ASP A . n A 1 213 VAL 213 284 284 VAL VAL A . n A 1 214 ILE 214 285 285 ILE ILE A . n A 1 215 THR 215 286 286 THR THR A . n A 1 216 LEU 216 287 287 LEU LEU A . n A 1 217 ASP 217 288 288 ASP ASP A . n A 1 218 MET 218 289 289 MET MET A . n A 1 219 VAL 219 290 290 VAL VAL A . n A 1 220 THR 220 291 291 THR THR A . n A 1 221 ILE 221 292 292 ILE ILE A . n A 1 222 GLN 222 293 293 GLN GLN A . n A 1 223 VAL 223 294 294 VAL VAL A . n A 1 224 SER 224 295 295 SER SER A . n A 1 225 ASP 225 296 296 ASP ASP A . n A 1 226 LEU 226 297 297 LEU LEU A . n A 1 227 GLU 227 298 298 GLU GLU A . n A 1 228 ARG 228 299 299 ARG ARG A . n A 1 229 LEU 229 300 300 LEU LEU A . n A 1 230 LYS 230 301 301 LYS LYS A . n A 1 231 GLY 231 302 302 GLY GLY A . n A 1 232 GLU 232 303 303 GLU GLU A . n A 1 233 PHE 233 304 304 PHE PHE A . n A 1 234 THR 234 305 305 THR THR A . n A 1 235 PHE 235 306 306 PHE PHE A . n A 1 236 THR 236 307 307 THR THR A . n A 1 237 VAL 237 308 308 VAL VAL A . n A 1 238 GLU 238 309 309 GLU GLU A . n A 1 239 LYS 239 310 310 LYS LYS A . n A 1 240 SER 240 311 311 SER SER A . n A 1 241 GLY 241 312 312 GLY GLY A . n A 1 242 MET 242 313 313 MET MET A . n A 1 243 PHE 243 314 314 PHE PHE A . n A 1 244 HIS 244 315 315 HIS HIS A . n A 1 245 GLY 245 316 316 GLY GLY A . n A 1 246 PHE 246 317 317 PHE PHE A . n A 1 247 THR 247 318 318 THR THR A . n A 1 248 VAL 248 319 319 VAL VAL A . n A 1 249 TRP 249 320 320 TRP TRP A . n A 1 250 PHE 250 321 321 PHE PHE A . n A 1 251 SER 251 322 322 SER SER A . n A 1 252 ALA 252 323 323 ALA ALA A . n A 1 253 HIS 253 324 324 HIS HIS A . n A 1 254 PHE 254 325 325 PHE PHE A . n A 1 255 GLN 255 326 326 GLN GLN A . n A 1 256 CYS 256 327 327 CYS CYS A . n A 1 257 LEU 257 328 328 LEU LEU A . n A 1 258 GLU 258 329 329 GLU GLU A . n A 1 259 GLU 259 330 330 GLU GLU A . n A 1 260 ASP 260 331 331 ASP ASP A . n A 1 261 GLY 261 332 332 GLY GLY A . n A 1 262 PRO 262 333 333 PRO PRO A . n A 1 263 SER 263 334 334 SER SER A . n A 1 264 ILE 264 335 335 ILE ILE A . n A 1 265 GLU 265 336 336 GLU GLU A . n A 1 266 LEU 266 337 337 LEU LEU A . n A 1 267 ASN 267 338 338 ASN ASN A . n A 1 268 THR 268 339 339 THR THR A . n A 1 269 GLY 269 340 340 GLY GLY A . n A 1 270 PRO 270 341 341 PRO PRO A . n A 1 271 TYR 271 342 342 TYR TYR A . n A 1 272 SER 272 343 343 SER SER A . n A 1 273 GLU 273 344 344 GLU GLU A . n A 1 274 ILE 274 345 345 ILE ILE A . n A 1 275 THR 275 346 346 THR THR A . n A 1 276 HIS 276 347 347 HIS HIS A . n A 1 277 TRP 277 348 348 TRP TRP A . n A 1 278 LYS 278 349 349 LYS LYS A . n A 1 279 GLN 279 350 350 GLN GLN A . n A 1 280 THR 280 351 351 THR THR A . n A 1 281 LEU 281 352 352 LEU LEU A . n A 1 282 PHE 282 353 353 PHE PHE A . n A 1 283 MET 283 354 354 MET MET A . n A 1 284 LEU 284 355 355 LEU LEU A . n A 1 285 ASP 285 356 356 ASP ASP A . n A 1 286 ALA 286 357 357 ALA ALA A . n A 1 287 PRO 287 358 358 PRO PRO A . n A 1 288 VAL 288 359 359 VAL VAL A . n A 1 289 SER 289 360 360 SER SER A . n A 1 290 VAL 290 361 361 VAL VAL A . n A 1 291 GLU 291 362 362 GLU GLU A . n A 1 292 GLU 292 363 363 GLU GLU A . n A 1 293 GLY 293 364 364 GLY GLY A . n A 1 294 ASP 294 365 365 ASP ASP A . n A 1 295 ILE 295 366 366 ILE ILE A . n A 1 296 ILE 296 367 367 ILE ILE A . n A 1 297 ALA 297 368 368 ALA ALA A . n A 1 298 GLY 298 369 369 GLY GLY A . n A 1 299 SER 299 370 370 SER SER A . n A 1 300 ILE 300 371 371 ILE ILE A . n A 1 301 ARG 301 372 372 ARG ARG A . n A 1 302 LEU 302 373 373 LEU LEU A . n A 1 303 GLN 303 374 374 GLN GLN A . n A 1 304 ARG 304 375 375 ARG ARG A . n A 1 305 ASN 305 376 376 ASN ASN A . n A 1 306 PRO 306 377 377 PRO PRO A . n A 1 307 ILE 307 378 378 ILE ILE A . n A 1 308 TRP 308 379 379 TRP TRP A . n A 1 309 ARG 309 380 380 ARG ARG A . n A 1 310 ARG 310 381 381 ARG ARG A . n A 1 311 HIS 311 382 382 HIS HIS A . n A 1 312 LEU 312 383 383 LEU LEU A . n A 1 313 SER 313 384 384 SER SER A . n A 1 314 ILE 314 385 385 ILE ILE A . n A 1 315 THR 315 386 386 THR THR A . n A 1 316 PHE 316 387 387 PHE PHE A . n A 1 317 LEU 317 388 388 LEU LEU A . n A 1 318 TRP 318 389 389 TRP TRP A . n A 1 319 ASN 319 390 390 ASN ASN A . n A 1 320 ILE 320 391 391 ILE ILE A . n A 1 321 ASN 321 392 392 ASN ASN A . n A 1 322 SER 322 393 393 SER SER A . n A 1 323 THR 323 394 394 THR THR A . n A 1 324 GLU 324 395 395 GLU GLU A . n A 1 325 VAL 325 396 396 VAL VAL A . n A 1 326 SER 326 397 397 SER SER A . n A 1 327 THR 327 398 398 THR THR A . n A 1 328 VAL 328 399 399 VAL VAL A . n A 1 329 LYS 329 400 400 LYS LYS A . n A 1 330 THR 330 401 401 THR THR A . n A 1 331 LYS 331 402 402 LYS LYS A . n A 1 332 CYS 332 403 403 CYS CYS A . n A 1 333 PHE 333 404 404 PHE PHE A . n A 1 334 PRO 334 405 405 PRO PRO A . n A 1 335 MET 335 406 406 MET MET A . n A 1 336 TRP 336 407 407 TRP TRP A . n A 1 337 ARG 337 408 408 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH 1 409 409 SAH SAH A . C 3 MES 1 417 417 MES MES A . D 4 CL 1 1409 1409 CL CL A . E 5 NA 1 1410 1410 NA NA A . F 6 EDO 1 1411 1411 EDO EDO A . G 6 EDO 1 1412 1412 EDO EDO A . H 6 EDO 1 1413 1413 EDO EDO A . I 6 EDO 1 1414 1414 EDO EDO A . J 5 NA 1 1415 1415 NA NA A . K 7 HOH 1 2001 2001 HOH HOH A . K 7 HOH 2 2002 2002 HOH HOH A . K 7 HOH 3 2003 2003 HOH HOH A . K 7 HOH 4 2004 2004 HOH HOH A . K 7 HOH 5 2005 2005 HOH HOH A . K 7 HOH 6 2006 2006 HOH HOH A . K 7 HOH 7 2007 2007 HOH HOH A . K 7 HOH 8 2008 2008 HOH HOH A . K 7 HOH 9 2009 2009 HOH HOH A . K 7 HOH 10 2010 2010 HOH HOH A . K 7 HOH 11 2011 2011 HOH HOH A . K 7 HOH 12 2012 2012 HOH HOH A . K 7 HOH 13 2013 2013 HOH HOH A . K 7 HOH 14 2014 2014 HOH HOH A . K 7 HOH 15 2015 2015 HOH HOH A . K 7 HOH 16 2016 2016 HOH HOH A . K 7 HOH 17 2017 2017 HOH HOH A . K 7 HOH 18 2018 2018 HOH HOH A . K 7 HOH 19 2019 2019 HOH HOH A . K 7 HOH 20 2020 2020 HOH HOH A . K 7 HOH 21 2021 2021 HOH HOH A . K 7 HOH 22 2022 2022 HOH HOH A . K 7 HOH 23 2023 2023 HOH HOH A . K 7 HOH 24 2024 2024 HOH HOH A . K 7 HOH 25 2025 2025 HOH HOH A . K 7 HOH 26 2026 2026 HOH HOH A . K 7 HOH 27 2027 2027 HOH HOH A . K 7 HOH 28 2028 2028 HOH HOH A . K 7 HOH 29 2029 2029 HOH HOH A . K 7 HOH 30 2030 2030 HOH HOH A . K 7 HOH 31 2031 2031 HOH HOH A . K 7 HOH 32 2032 2032 HOH HOH A . K 7 HOH 33 2033 2033 HOH HOH A . K 7 HOH 34 2034 2034 HOH HOH A . K 7 HOH 35 2035 2035 HOH HOH A . K 7 HOH 36 2036 2036 HOH HOH A . K 7 HOH 37 2037 2037 HOH HOH A . K 7 HOH 38 2038 2038 HOH HOH A . K 7 HOH 39 2039 2039 HOH HOH A . K 7 HOH 40 2040 2040 HOH HOH A . K 7 HOH 41 2041 2041 HOH HOH A . K 7 HOH 42 2042 2042 HOH HOH A . K 7 HOH 43 2043 2043 HOH HOH A . K 7 HOH 44 2044 2044 HOH HOH A . K 7 HOH 45 2045 2045 HOH HOH A . K 7 HOH 46 2046 2046 HOH HOH A . K 7 HOH 47 2047 2047 HOH HOH A . K 7 HOH 48 2048 2048 HOH HOH A . K 7 HOH 49 2049 2049 HOH HOH A . K 7 HOH 50 2050 2050 HOH HOH A . K 7 HOH 51 2051 2051 HOH HOH A . K 7 HOH 52 2052 2052 HOH HOH A . K 7 HOH 53 2053 2053 HOH HOH A . K 7 HOH 54 2054 2054 HOH HOH A . K 7 HOH 55 2055 2055 HOH HOH A . K 7 HOH 56 2056 2056 HOH HOH A . K 7 HOH 57 2057 2057 HOH HOH A . K 7 HOH 58 2058 2058 HOH HOH A . K 7 HOH 59 2059 2059 HOH HOH A . K 7 HOH 60 2060 2060 HOH HOH A . K 7 HOH 61 2061 2061 HOH HOH A . K 7 HOH 62 2062 2062 HOH HOH A . K 7 HOH 63 2063 2063 HOH HOH A . K 7 HOH 64 2064 2064 HOH HOH A . K 7 HOH 65 2065 2065 HOH HOH A . K 7 HOH 66 2066 2066 HOH HOH A . K 7 HOH 67 2067 2067 HOH HOH A . K 7 HOH 68 2068 2068 HOH HOH A . K 7 HOH 69 2069 2069 HOH HOH A . K 7 HOH 70 2070 2070 HOH HOH A . K 7 HOH 71 2071 2071 HOH HOH A . K 7 HOH 72 2072 2072 HOH HOH A . K 7 HOH 73 2073 2073 HOH HOH A . K 7 HOH 74 2074 2074 HOH HOH A . K 7 HOH 75 2075 2075 HOH HOH A . K 7 HOH 76 2076 2076 HOH HOH A . K 7 HOH 77 2077 2077 HOH HOH A . K 7 HOH 78 2078 2078 HOH HOH A . K 7 HOH 79 2079 2079 HOH HOH A . K 7 HOH 80 2080 2080 HOH HOH A . K 7 HOH 81 2081 2081 HOH HOH A . K 7 HOH 82 2082 2082 HOH HOH A . K 7 HOH 83 2083 2083 HOH HOH A . K 7 HOH 84 2084 2084 HOH HOH A . K 7 HOH 85 2085 2085 HOH HOH A . K 7 HOH 86 2086 2086 HOH HOH A . K 7 HOH 87 2087 2087 HOH HOH A . K 7 HOH 88 2088 2088 HOH HOH A . K 7 HOH 89 2089 2089 HOH HOH A . K 7 HOH 90 2090 2090 HOH HOH A . K 7 HOH 91 2091 2091 HOH HOH A . K 7 HOH 92 2092 2092 HOH HOH A . K 7 HOH 93 2093 2093 HOH HOH A . K 7 HOH 94 2094 2094 HOH HOH A . K 7 HOH 95 2095 2095 HOH HOH A . K 7 HOH 96 2096 2096 HOH HOH A . K 7 HOH 97 2097 2097 HOH HOH A . K 7 HOH 98 2098 2098 HOH HOH A . K 7 HOH 99 2099 2099 HOH HOH A . K 7 HOH 100 2100 2100 HOH HOH A . K 7 HOH 101 2101 2101 HOH HOH A . K 7 HOH 102 2102 2102 HOH HOH A . K 7 HOH 103 2103 2103 HOH HOH A . K 7 HOH 104 2104 2104 HOH HOH A . K 7 HOH 105 2105 2105 HOH HOH A . K 7 HOH 106 2106 2106 HOH HOH A . K 7 HOH 107 2107 2107 HOH HOH A . K 7 HOH 108 2108 2108 HOH HOH A . K 7 HOH 109 2109 2109 HOH HOH A . K 7 HOH 110 2110 2110 HOH HOH A . K 7 HOH 111 2111 2111 HOH HOH A . K 7 HOH 112 2112 2112 HOH HOH A . K 7 HOH 113 2113 2113 HOH HOH A . K 7 HOH 114 2114 2114 HOH HOH A . K 7 HOH 115 2115 2115 HOH HOH A . K 7 HOH 116 2116 2116 HOH HOH A . K 7 HOH 117 2117 2117 HOH HOH A . K 7 HOH 118 2118 2118 HOH HOH A . K 7 HOH 119 2119 2119 HOH HOH A . K 7 HOH 120 2120 2120 HOH HOH A . K 7 HOH 121 2121 2121 HOH HOH A . K 7 HOH 122 2122 2122 HOH HOH A . K 7 HOH 123 2123 2123 HOH HOH A . K 7 HOH 124 2124 2124 HOH HOH A . K 7 HOH 125 2125 2125 HOH HOH A . K 7 HOH 126 2126 2126 HOH HOH A . K 7 HOH 127 2127 2127 HOH HOH A . K 7 HOH 128 2128 2128 HOH HOH A . K 7 HOH 129 2129 2129 HOH HOH A . K 7 HOH 130 2130 2130 HOH HOH A . K 7 HOH 131 2131 2131 HOH HOH A . K 7 HOH 132 2132 2132 HOH HOH A . K 7 HOH 133 2133 2133 HOH HOH A . K 7 HOH 134 2134 2134 HOH HOH A . K 7 HOH 135 2135 2135 HOH HOH A . K 7 HOH 136 2136 2136 HOH HOH A . K 7 HOH 137 2137 2137 HOH HOH A . K 7 HOH 138 2138 2138 HOH HOH A . K 7 HOH 139 2139 2139 HOH HOH A . K 7 HOH 140 2140 2140 HOH HOH A . K 7 HOH 141 2141 2141 HOH HOH A . K 7 HOH 142 2142 2142 HOH HOH A . K 7 HOH 143 2143 2143 HOH HOH A . K 7 HOH 144 2144 2144 HOH HOH A . K 7 HOH 145 2145 2145 HOH HOH A . K 7 HOH 146 2146 2146 HOH HOH A . K 7 HOH 147 2147 2147 HOH HOH A . K 7 HOH 148 2148 2148 HOH HOH A . K 7 HOH 149 2149 2149 HOH HOH A . K 7 HOH 150 2150 2150 HOH HOH A . K 7 HOH 151 2151 2151 HOH HOH A . K 7 HOH 152 2152 2152 HOH HOH A . K 7 HOH 153 2153 2153 HOH HOH A . K 7 HOH 154 2154 2154 HOH HOH A . K 7 HOH 155 2155 2155 HOH HOH A . K 7 HOH 156 2156 2156 HOH HOH A . K 7 HOH 157 2157 2157 HOH HOH A . K 7 HOH 158 2158 2158 HOH HOH A . K 7 HOH 159 2159 2159 HOH HOH A . K 7 HOH 160 2160 2160 HOH HOH A . K 7 HOH 161 2161 2161 HOH HOH A . K 7 HOH 162 2162 2162 HOH HOH A . K 7 HOH 163 2163 2163 HOH HOH A . K 7 HOH 164 2164 2164 HOH HOH A . K 7 HOH 165 2165 2165 HOH HOH A . K 7 HOH 166 2166 2166 HOH HOH A . K 7 HOH 167 2167 2167 HOH HOH A . K 7 HOH 168 2168 2168 HOH HOH A . K 7 HOH 169 2169 2169 HOH HOH A . K 7 HOH 170 2170 2170 HOH HOH A . K 7 HOH 171 2171 2171 HOH HOH A . K 7 HOH 172 2172 2172 HOH HOH A . K 7 HOH 173 2173 2173 HOH HOH A . K 7 HOH 174 2174 2174 HOH HOH A . K 7 HOH 175 2175 2175 HOH HOH A . K 7 HOH 176 2176 2176 HOH HOH A . K 7 HOH 177 2177 2177 HOH HOH A . K 7 HOH 178 2178 2178 HOH HOH A . K 7 HOH 179 2179 2179 HOH HOH A . K 7 HOH 180 2180 2180 HOH HOH A . K 7 HOH 181 2181 2181 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6750 ? 1 MORE -51.2 ? 1 'SSA (A^2)' 27270 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 127.3900000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-09 2 'Structure model' 1 1 2016-11-23 3 'Structure model' 1 2 2016-11-30 4 'Structure model' 1 3 2016-12-07 5 'Structure model' 1 4 2017-03-01 6 'Structure model' 1 5 2019-04-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Database references' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Source and taxonomy' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 6 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category entity_src_gen # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 6 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_entity_src_gen.pdbx_host_org_cell_line' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 4.5829 24.2645 48.0440 0.5684 0.1738 0.3476 -0.0533 0.0465 0.0167 0.2133 0.0063 0.0425 -0.0174 -0.1007 0.0116 0.1638 -0.0349 -0.1157 -0.0885 -0.0559 -0.0225 -0.4040 0.0355 0.1328 'X-RAY DIFFRACTION' 2 ? refined -1.1780 23.6795 37.0235 0.5022 0.1603 0.2715 0.0974 0.0000 0.0131 0.4269 0.1598 0.0495 -0.0201 -0.0849 0.0202 0.2420 0.1431 -0.1540 -0.1620 -0.0798 0.1088 -0.4891 -0.0137 0.1948 'X-RAY DIFFRACTION' 3 ? refined 29.1252 17.8534 62.4200 0.3451 0.5463 0.3513 -0.2622 0.0526 -0.1106 0.1223 0.2947 0.0894 -0.1382 0.0739 -0.0133 0.0589 -0.0881 0.1198 -0.0941 -0.0947 -0.0507 -0.1261 0.3264 -0.0515 'X-RAY DIFFRACTION' 4 ? refined 22.8208 23.6929 40.6864 0.5195 0.4371 0.3157 -0.1996 0.0933 -0.0050 1.0053 0.7131 0.0774 -0.7179 0.1360 -0.0643 0.1815 0.2219 0.0637 -0.2691 -0.0646 -0.0241 -0.4192 0.4991 0.1334 'X-RAY DIFFRACTION' 5 ? refined 32.8996 15.6181 48.5129 0.2674 0.5804 0.2989 -0.1280 0.0443 -0.0605 0.3131 0.2047 0.0410 0.0022 0.1145 -0.0206 0.0335 -0.0340 -0.0488 -0.1464 -0.0299 -0.0179 0.0054 0.3854 0.0192 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 72 THROUGH 109 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 110 THROUGH 221 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 222 THROUGH 273 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 274 THROUGH 350 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;CHAIN 'A' AND (RESID 351 THROUGH 375) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 BALBES phasing . ? 2 # _pdbx_entry_details.entry_id 5FUB _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;CRYSTALLIZED PRMT2 SEQUENCE STARTS AT D73 G72 COMES FROM THE TEV CLEAVAGE SITE ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 A EDO 1413 ? ? O A HOH 2001 ? ? 1.97 2 1 O A HOH 2154 ? ? O A HOH 2156 ? ? 2.09 3 1 O A HOH 2039 ? ? O A HOH 2063 ? ? 2.11 4 1 NE A ARG 115 ? ? O A HOH 2029 ? ? 2.15 5 1 O A GLU 303 ? ? O A HOH 2115 ? ? 2.19 6 1 NE1 A TRP 407 ? ? O A HOH 2169 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2024 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2024 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 17_555 _pdbx_validate_symm_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 176 ? ? -115.50 62.08 2 1 LEU A 195 ? ? 70.74 -53.32 3 1 GLU A 198 ? ? 81.41 -9.85 4 1 ALA A 232 ? ? -148.28 58.77 5 1 ASN A 245 ? ? -151.10 53.48 6 1 LYS A 349 ? ? 49.83 -135.64 7 1 GLU A 395 ? ? -57.43 172.83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYL-L-HOMOCYSTEINE SAH 3 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 4 'CHLORIDE ION' CL 5 'SODIUM ION' NA 6 1,2-ETHANEDIOL EDO 7 water HOH #