data_5GDS # _entry.id 5GDS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5GDS pdb_00005gds 10.2210/pdb5gds/pdb WWPDB D_1000179714 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5GDS _pdbx_database_status.recvd_initial_deposition_date 1997-07-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'De Simone, G.' 1 'Lombardi, A.' 2 'Galdiero, S.' 3 'Nastri, F.' 4 'Della Morte, R.' 5 'Staiano, N.' 6 'Pedone, C.' 7 'Bolognesi, M.' 8 'Pavone, V.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Hirunorms are true hirudin mimetics. The crystal structure of human alpha-thrombin-hirunorm V complex.' 'Protein Sci.' 7 243 253 1998 PRCIEI US 0961-8368 0795 ? 9521099 ? 1 'Rational Design of True Hirudin Mimetics: Synthesis and Characterization of Multisite-Directed Alpha-Thrombin Inhibitors' J.Med.Chem. 39 2008 ? 1996 JMCMAR US 0022-2623 0151 ? ? ? 2 'Refined Structure of the Hirudin-Thrombin Complex' J.Mol.Biol. 221 583 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'De Simone, G.' 1 ? primary 'Lombardi, A.' 2 ? primary 'Galdiero, S.' 3 ? primary 'Nastri, F.' 4 ? primary 'Della Morte, R.' 5 ? primary 'Staiano, N.' 6 ? primary 'Pedone, C.' 7 ? primary 'Bolognesi, M.' 8 ? primary 'Pavone, V.' 9 ? 1 'Lombardi, A.' 10 ? 1 'Nastri, F.' 11 ? 1 'Della Morte, R.' 12 ? 1 'Rossi, A.' 13 ? 1 'De Rosa, A.' 14 ? 1 'Staiano, N.' 15 ? 1 'Pedone, C.' 16 ? 1 'Pavone, V.' 17 ? 2 'Rydel, T.J.' 18 ? 2 'Tulinsky, A.' 19 ? 2 'Bode, W.' 20 ? 2 'Huber, R.' 21 ? # _cell.entry_id 5GDS _cell.length_a 71.900 _cell.length_b 72.800 _cell.length_c 73.300 _cell.angle_alpha 90.00 _cell.angle_beta 100.70 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 5GDS _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat ALPHA-THROMBIN 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat ALPHA-THROMBIN 29780.219 1 3.4.21.5 ? ? ? 3 polymer man 'HIRUNORM V' 2958.211 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 water nat water 18.015 133 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 'polypeptide(L)' no yes '(CHG)V(NAL)TD(DAL)G(BAL)PESH(HMF)GGDYEEIP(AIB)(AIB)Y(ALC)(DGL)' XVATDAGXPESHXGGDYEEIPAAYAE I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 CHG n 3 2 VAL n 3 3 NAL n 3 4 THR n 3 5 ASP n 3 6 DAL n 3 7 GLY n 3 8 BAL n 3 9 PRO n 3 10 GLU n 3 11 SER n 3 12 HIS n 3 13 HMF n 3 14 GLY n 3 15 GLY n 3 16 ASP n 3 17 TYR n 3 18 GLU n 3 19 GLU n 3 20 ILE n 3 21 PRO n 3 22 AIB n 3 23 AIB n 3 24 TYR n 3 25 ALC n 3 26 DGL n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? PLASMA ? ? ? ? ? ? ? BLOOD ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 Homo ? ? PLASMA ? ? ? ? ? ? ? BLOOD ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN 1 P00734 328 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR ? 2 UNP THRB_HUMAN 2 P00734 364 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ? 3 PDB 5GDS 3 5GDS 1 AVATDAGAPESHAGGDYEEIPAAYAE ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5GDS L 9 ? 36 ? P00734 328 ? 363 ? 1 15 2 2 5GDS H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 5GDS I 1 ? 26 ? 5GDS 1 ? 26 ? 1 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALC 'L-peptide linking' n '2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID' ? 'C9 H17 N O2' 171.237 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BAL peptide-like . BETA-ALANINE ? 'C3 H7 N O2' 89.093 CHG 'L-peptide linking' . CYCLOHEXYL-GLYCINE ? 'C8 H15 N O2' 157.210 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HMF 'D-peptide linking' . '2-AMINO-4-PHENYL-BUTYRIC ACID' D-BETA-HOMOPHENYLALANINE 'C10 H13 N O2' 179.216 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 NAL 'L-peptide linking' n 'BETA-(2-NAPHTHYL)-ALANINE' ? 'C13 H13 N O2' 215.248 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5GDS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 49. _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;THE CRYSTALS OF THROMBIN:HIRUNORM V COMPLEX WERE GROWN, AS DESCRIBED BY SKRZYPEZAK ET AL. (1991) J. MOL. BIOL.,221,1379-1393 BY VAPOR DIFFUSION METHODS AT 4 C. A 6 MICROLITER DROP, CONTAINING 0.05 M SODIUM HEPES (PH 7.0) 10% (W/V) PEG 4000 0.02% NAN3, 20 MG/ML. THROMBIN:HIRUNORM V COMPLEX WAS EQUILIBRATED AGAINST A PRECIPITATING SOLUTION CONTAINING 0.1 M SODIUM HEPES (PH 7.0) 20% (W/V) PEG 4000 0.04% NAN3. CRYSTAL OF THROMBIN:HIRUGEN COMPLEX WERE CRUSHED AND INDIVIDUAL SEEDS WERE USED FOR CROSS-SEEDING EXPERIMENTS., vapor diffusion, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1996-01-10 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 5GDS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.1 _reflns.number_obs 21615 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.8 _reflns.B_iso_Wilson_estimate 28.7 _reflns.pdbx_redundancy 2.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.17 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 5GDS _refine.ls_number_reflns_obs 21609 _refine.ls_number_reflns_all 21609 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.1 _refine.ls_percent_reflns_obs 97. _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.834 _refine.solvent_model_param_bsol 158.7 _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE REGIONS WITH INTERRUPTED ELECTRON DENSITIES ARE FOUND IN THE N-TERMINAL AND C-TERMINAL REGIONS OF CHAIN L, THE C-TERMINAL REGION OF CHAIN H, AND SOME RESIDUES IN THE AUTOLYSIS LOOP. THESE REGIONS INCLUDE: THR L 1H - GLU L 1C; ASP L 14L - ARG L 15; THR H 147 AND TRP H 148; GLY H 246 AND GLU H 247. RESIDUES THR H 149 - LYS H 149E IN THE GAMMA AUTOLYSIS LOOP ARE FOUND WITH NO ELECTRON DENSITIES AND ARE NOT INCLUDED IN THIS ENTRY. THERE IS NO ELECTRON DENSITY FOT HIRUNORM V RESIDUES I 5 - I 15. OTHER ATOMS WITH NO DENSITY ARE GIVEN OCCUPANCY VALUES OF 0.00 IN THIS ENTRY. ; _refine.pdbx_starting_model 'PDB ENTRY 1HAH (J. VIJAYALAKSHMI ET AL., 1994, PROTEIN SCI. 3,2254-71)' _refine.pdbx_method_to_determine_struct 'THE STRUCTURE WAS ANALYZED BY DIFFERENCE FOURIER TECHNIQUES' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2476 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 2623 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.018 ? 18.000 3483 'X-RAY DIFFRACTION' ? t_angle_deg 2.8 ? 40.00 3474 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 17.835 ? 7.000 1503 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.021 ? 29.000 62 'X-RAY DIFFRACTION' ? t_gen_planes 0.021 ? 99.00 362 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd 0.230 ? 25.00 81 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 5GDS _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.176 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 5GDS _struct.title 'HIRUNORMS ARE TRUE HIRUDIN MIMETICS. THE CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN:HIRUNORM V COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5GDS _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text ;SERINE PROTEASE-INHIBITOR complex, THROMBIN, THROMBIN SYNTHETIC INHIBITORS, ANTITHROMBOTICS, HIRUNORMS, HIRUDIN-LIKE BINDING MODE, BLOOD COAGULATION, HYDROLASE-HYDROLASE INHIBITOR COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 16 ? LYS A 18 ? GLU L 8 LYS L 10 5 ? 3 HELX_P HELX_P2 2 GLU A 25 C SER A 31 I GLU L 14 SER L 14 1 ? 7 HELX_P HELX_P3 3 ALA B 42 ? CYS B 44 ? ALA H 56 CYS H 58 5 ? 3 HELX_P HELX_P4 4 PRO B 48 B TRP B 50 D PRO H 60 TRP H 60 5 ? 3 HELX_P HELX_P5 5 GLU B 56 ? ASP B 58 ? GLU H 61 ASP H 63 5 ? 3 HELX_P HELX_P6 6 ARG B 123 ? LEU B 129 C ARG H 126 LEU H 129 1 ? 7 HELX_P HELX_P7 7 ARG B 170 ? SER B 176 ? ARG H 165 SER H 171 1 ? 7 HELX_P HELX_P8 8 PRO B 192 ? GLU B 194 B PRO H 186 GLU H 186 5 ? 3 HELX_P HELX_P9 9 PHE B 244 ? PHE B 257 ? PHE H 232 PHE H 245 5 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 1.995 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.058 ? ? covale1 covale one ? B ASN 53 ND2 ? G ? 1_555 D NAG . C1 ? ? H ASN 60 H NAG 400 1_555 ? ? ? ? ? ? ? 1.393 ? N-Glycosylation covale2 covale both ? C CHG 1 C ? ? ? 1_555 C VAL 2 N ? ? I CHG 1 I VAL 2 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? C VAL 2 C ? ? ? 1_555 C NAL 3 N ? ? I VAL 2 I NAL 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? C PRO 21 C ? ? ? 1_555 C AIB 22 N ? ? I PRO 21 I AIB 22 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale5 covale both ? C AIB 22 C ? ? ? 1_555 C AIB 23 N ? ? I AIB 22 I AIB 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? C AIB 23 C ? ? ? 1_555 C TYR 24 N ? ? I AIB 23 I TYR 24 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale7 covale both ? C TYR 24 C ? ? ? 1_555 C ALC 25 N ? ? I TYR 24 I ALC 25 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? C ALC 25 C ? ? ? 1_555 C DGL 26 N ? ? I ALC 25 I DGL 26 1_555 ? ? ? ? ? ? ? 1.330 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.86 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS B 77 ? MET B 80 ? LYS H 81 MET H 84 A 2 LEU B 59 ? ILE B 63 ? LEU H 64 ILE H 68 A 3 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 A 4 GLU B 25 ? SER B 31 ? GLU H 39 SER H 45 B 1 TRP B 37 ? THR B 40 ? TRP H 51 THR H 54 B 2 ALA B 101 ? LEU B 105 ? ALA H 104 LEU H 108 B 3 LEU B 81 ? ILE B 86 ? LEU H 85 ILE H 90 C 1 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 C 2 GLN B 161 ? PRO B 166 ? GLN H 156 PRO H 161 D 1 MET B 185 ? ALA B 188 ? MET H 180 ALA H 183 D 2 GLY B 238 ? HIS B 242 ? GLY H 226 HIS H 230 D 3 TRP B 219 ? TRP B 227 ? TRP H 207 TRP H 215 D 4 PRO B 208 ? LYS B 212 ? PRO H 198 LYS H 202 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS B 77 ? O LYS H 81 N ILE B 63 ? N ILE H 68 A 2 3 O LEU B 60 ? O LEU H 65 N PHE B 19 ? N PHE H 34 A 3 4 O VAL B 16 ? O VAL H 31 N ALA B 30 ? N ALA H 44 B 1 2 O VAL B 38 ? O VAL H 52 N MET B 103 ? N MET H 106 B 2 3 O LEU B 102 ? O LEU H 105 N TYR B 85 ? N TYR H 89 C 1 2 O GLY B 136 ? O GLY H 136 N LEU B 165 ? N LEU H 160 D 1 2 O PHE B 186 ? O PHE H 181 N TYR B 240 ? N TYR H 228 D 2 3 O PHE B 239 ? O PHE H 227 N TRP B 227 ? N TRP H 215 D 3 4 O TYR B 220 ? O TYR H 208 N MET B 211 ? N MET H 201 # _struct_site.id CAT _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'CATALYTIC SITE.' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAT 3 HIS B 43 ? HIS H 57 . ? 1_555 ? 2 CAT 3 ASP B 99 ? ASP H 102 . ? 1_555 ? 3 CAT 3 SER B 205 ? SER H 195 . ? 1_555 ? # _database_PDB_matrix.entry_id 5GDS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5GDS _atom_sites.fract_transf_matrix[1][1] 0.013908 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002628 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013736 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013884 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'NAG H 400 HAS WRONG CHIRALITY AT ATOM C2' 2 'NAG H 400 HAS WRONG CHIRALITY AT ATOM C4' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR L H n A 1 2 PHE 2 1 1 PHE PHE L G n A 1 3 GLY 3 1 1 GLY GLY L F n A 1 4 SER 4 1 1 SER SER L E n A 1 5 GLY 5 1 1 GLY GLY L D n A 1 6 GLU 6 1 1 GLU GLU L C n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 14 14 ASP ASP L L n A 1 35 GLY 35 14 14 GLY GLY L M n A 1 36 ARG 36 15 15 ARG ARG L . n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 148 TRP TRP H . n B 2 149 THR 149 148 ? ? ? H A n B 2 150 ALA 150 148 ? ? ? H B n B 2 151 ASN 151 148 ? ? ? H C n B 2 152 VAL 152 148 ? ? ? H D n B 2 153 GLY 153 148 ? ? ? H E n B 2 154 LYS 154 148 ? ? ? H F n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H . n B 2 233 ARG 233 221 221 ARG ARG H A n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 246 GLY GLY H . n B 2 259 GLU 259 247 247 GLU GLU H . n C 3 1 CHG 1 1 1 CHG CHG I . n C 3 2 VAL 2 2 2 VAL VAL I . n C 3 3 NAL 3 3 3 NAL NAL I . n C 3 4 THR 4 4 4 THR THR I . n C 3 5 ASP 5 5 ? ? ? I . n C 3 6 DAL 6 6 ? ? ? I . n C 3 7 GLY 7 7 ? ? ? I . n C 3 8 BAL 8 8 ? ? ? I . n C 3 9 PRO 9 9 ? ? ? I . n C 3 10 GLU 10 10 ? ? ? I . n C 3 11 SER 11 11 ? ? ? I . n C 3 12 HIS 12 12 ? ? ? I . n C 3 13 HMF 13 13 ? ? ? I . n C 3 14 GLY 14 14 ? ? ? I . n C 3 15 GLY 15 15 ? ? ? I . n C 3 16 ASP 16 16 16 ASP ASP I . n C 3 17 TYR 17 17 17 TYR TYR I . n C 3 18 GLU 18 18 18 GLU GLU I . n C 3 19 GLU 19 19 19 GLU GLU I . n C 3 20 ILE 20 20 20 ILE ILE I . n C 3 21 PRO 21 21 21 PRO PRO I . n C 3 22 AIB 22 22 22 AIB AIB I . n C 3 23 AIB 23 23 23 AIB AIB I . n C 3 24 TYR 24 24 24 TYR TYR I . n C 3 25 ALC 25 25 25 ALC HAC I . n C 3 26 DGL 26 26 26 DGL DGL I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 400 400 NAG NAG H . E 5 HOH 1 436 436 HOH HOH L . E 5 HOH 2 446 446 HOH HOH L . E 5 HOH 3 449 449 HOH HOH L . E 5 HOH 4 451 451 HOH HOH L . E 5 HOH 5 456 456 HOH HOH L . E 5 HOH 6 484 484 HOH HOH L . E 5 HOH 7 505 505 HOH HOH L . E 5 HOH 8 517 517 HOH HOH L . E 5 HOH 9 520 520 HOH HOH L . E 5 HOH 10 528 528 HOH HOH L . F 5 HOH 1 401 401 HOH HOH H . F 5 HOH 2 402 402 HOH HOH H . F 5 HOH 3 403 403 HOH HOH H . F 5 HOH 4 404 404 HOH HOH H . F 5 HOH 5 405 405 HOH HOH H . F 5 HOH 6 406 406 HOH HOH H . F 5 HOH 7 407 407 HOH HOH H . F 5 HOH 8 408 408 HOH HOH H . F 5 HOH 9 409 409 HOH HOH H . F 5 HOH 10 410 410 HOH HOH H . F 5 HOH 11 411 411 HOH HOH H . F 5 HOH 12 412 412 HOH HOH H . F 5 HOH 13 413 413 HOH HOH H . F 5 HOH 14 414 414 HOH HOH H . F 5 HOH 15 415 415 HOH HOH H . F 5 HOH 16 416 416 HOH HOH H . F 5 HOH 17 417 417 HOH HOH H . F 5 HOH 18 418 418 HOH HOH H . F 5 HOH 19 419 419 HOH HOH H . F 5 HOH 20 420 420 HOH HOH H . F 5 HOH 21 421 421 HOH HOH H . F 5 HOH 22 422 422 HOH HOH H . F 5 HOH 23 423 423 HOH HOH H . F 5 HOH 24 424 424 HOH HOH H . F 5 HOH 25 425 425 HOH HOH H . F 5 HOH 26 426 426 HOH HOH H . F 5 HOH 27 427 427 HOH HOH H . F 5 HOH 28 428 428 HOH HOH H . F 5 HOH 29 429 429 HOH HOH H . F 5 HOH 30 430 430 HOH HOH H . F 5 HOH 31 431 431 HOH HOH H . F 5 HOH 32 432 432 HOH HOH H . F 5 HOH 33 433 433 HOH HOH H . F 5 HOH 34 434 434 HOH HOH H . F 5 HOH 35 435 435 HOH HOH H . F 5 HOH 36 437 437 HOH HOH H . F 5 HOH 37 438 438 HOH HOH H . F 5 HOH 38 439 439 HOH HOH H . F 5 HOH 39 440 440 HOH HOH H . F 5 HOH 40 441 441 HOH HOH H . F 5 HOH 41 442 442 HOH HOH H . F 5 HOH 42 443 443 HOH HOH H . F 5 HOH 43 444 444 HOH HOH H . F 5 HOH 44 445 445 HOH HOH H . F 5 HOH 45 447 447 HOH HOH H . F 5 HOH 46 448 448 HOH HOH H . F 5 HOH 47 450 450 HOH HOH H . F 5 HOH 48 452 452 HOH HOH H . F 5 HOH 49 453 453 HOH HOH H . F 5 HOH 50 454 454 HOH HOH H . F 5 HOH 51 455 455 HOH HOH H . F 5 HOH 52 457 457 HOH HOH H . F 5 HOH 53 458 458 HOH HOH H . F 5 HOH 54 459 459 HOH HOH H . F 5 HOH 55 460 460 HOH HOH H . F 5 HOH 56 461 461 HOH HOH H . F 5 HOH 57 462 462 HOH HOH H . F 5 HOH 58 463 463 HOH HOH H . F 5 HOH 59 464 464 HOH HOH H . F 5 HOH 60 465 465 HOH HOH H . F 5 HOH 61 466 466 HOH HOH H . F 5 HOH 62 467 467 HOH HOH H . F 5 HOH 63 468 468 HOH HOH H . F 5 HOH 64 469 469 HOH HOH H . F 5 HOH 65 470 470 HOH HOH H . F 5 HOH 66 471 471 HOH HOH H . F 5 HOH 67 472 472 HOH HOH H . F 5 HOH 68 473 473 HOH HOH H . F 5 HOH 69 474 474 HOH HOH H . F 5 HOH 70 475 475 HOH HOH H . F 5 HOH 71 476 476 HOH HOH H . F 5 HOH 72 477 477 HOH HOH H . F 5 HOH 73 478 478 HOH HOH H . F 5 HOH 74 479 479 HOH HOH H . F 5 HOH 75 480 480 HOH HOH H . F 5 HOH 76 481 481 HOH HOH H . F 5 HOH 77 482 482 HOH HOH H . F 5 HOH 78 483 483 HOH HOH H . F 5 HOH 79 485 485 HOH HOH H . F 5 HOH 80 486 486 HOH HOH H . F 5 HOH 81 487 487 HOH HOH H . F 5 HOH 82 488 488 HOH HOH H . F 5 HOH 83 489 489 HOH HOH H . F 5 HOH 84 490 490 HOH HOH H . F 5 HOH 85 491 491 HOH HOH H . F 5 HOH 86 493 493 HOH HOH H . F 5 HOH 87 495 495 HOH HOH H . F 5 HOH 88 496 496 HOH HOH H . F 5 HOH 89 497 497 HOH HOH H . F 5 HOH 90 498 498 HOH HOH H . F 5 HOH 91 499 499 HOH HOH H . F 5 HOH 92 500 500 HOH HOH H . F 5 HOH 93 501 501 HOH HOH H . F 5 HOH 94 502 502 HOH HOH H . F 5 HOH 95 503 503 HOH HOH H . F 5 HOH 96 504 504 HOH HOH H . F 5 HOH 97 506 506 HOH HOH H . F 5 HOH 98 507 507 HOH HOH H . F 5 HOH 99 508 508 HOH HOH H . F 5 HOH 100 509 509 HOH HOH H . F 5 HOH 101 510 510 HOH HOH H . F 5 HOH 102 511 511 HOH HOH H . F 5 HOH 103 512 512 HOH HOH H . F 5 HOH 104 513 513 HOH HOH H . F 5 HOH 105 515 515 HOH HOH H . F 5 HOH 106 516 516 HOH HOH H . F 5 HOH 107 518 518 HOH HOH H . F 5 HOH 108 519 519 HOH HOH H . F 5 HOH 109 521 521 HOH HOH H . F 5 HOH 110 522 522 HOH HOH H . F 5 HOH 111 523 523 HOH HOH H . F 5 HOH 112 524 524 HOH HOH H . F 5 HOH 113 525 525 HOH HOH H . F 5 HOH 114 526 526 HOH HOH H . F 5 HOH 115 529 529 HOH HOH H . F 5 HOH 116 530 530 HOH HOH H . F 5 HOH 117 531 531 HOH HOH H . F 5 HOH 118 532 532 HOH HOH H . F 5 HOH 119 533 533 HOH HOH H . F 5 HOH 120 534 534 HOH HOH H . G 5 HOH 1 494 494 HOH HOH I . G 5 HOH 2 514 514 HOH HOH I . G 5 HOH 3 527 527 HOH HOH I . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B ASN 53 H ASN 60 G ASN 'GLYCOSYLATION SITE' 2 C NAL 3 I NAL 3 ? ALA 'BETA-(2-NAPHTHYL)-ALANINE' 3 C AIB 22 I AIB 22 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 4 C AIB 23 I AIB 23 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 5 C ALC 25 I ALC 25 ? ALA '2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5780 ? 1 MORE -4 ? 1 'SSA (A^2)' 13150 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-01-21 2 'Structure model' 1 1 2008-03-21 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-08-09 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Advisory 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Structure summary' 12 5 'Structure model' Advisory 13 5 'Structure model' 'Database references' 14 5 'Structure model' 'Refinement description' 15 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_PDB_caveat 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 4 'Structure model' pdbx_unobs_or_zero_occ_residues 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 4 'Structure model' struct_site_gen 11 5 'Structure model' chem_comp 12 5 'Structure model' database_2 13 5 'Structure model' pdbx_initial_refinement_model 14 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 5 'Structure model' pdbx_unobs_or_zero_occ_residues # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_dist_value' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 8 4 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code' 9 4 'Structure model' '_struct_conn.pdbx_role' 10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 5 'Structure model' '_chem_comp.pdbx_synonyms' 25 5 'Structure model' '_database_2.pdbx_DOI' 26 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 CCP4 'data reduction' . ? 2 CCP4 'model building' . ? 3 TNT refinement 5E ? 4 CCP4 'data scaling' . ? 5 CCP4 phasing . ? 6 # _pdbx_entry_details.entry_id 5GDS _pdbx_entry_details.compound_details ;THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN INDICATOR *I* IS USED FOR HIRUNORM V INHIBITOR. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, 3467-3475). ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N H GLU 146 ? ? O H HOH 523 ? ? 2.12 2 1 ND2 H ASN 60 G ? O5 H NAG 400 ? ? 2.16 3 1 ND2 H ASN 60 G ? C2 H NAG 400 ? ? 2.17 4 1 CG H ASN 60 G ? C1 H NAG 400 ? ? 2.18 5 1 O H HOH 403 ? ? O H HOH 462 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 L _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 14 _pdbx_validate_symm_contact.PDB_ins_code_1 L _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH2 _pdbx_validate_symm_contact.auth_asym_id_2 H _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 173 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 1.75 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD L GLU 8 ? ? OE2 L GLU 8 ? ? 1.320 1.252 0.068 0.011 N 2 1 CD L GLU 14 C ? OE2 L GLU 14 C ? 1.335 1.252 0.083 0.011 N 3 1 CD H GLU 23 ? ? OE2 H GLU 23 ? ? 1.327 1.252 0.075 0.011 N 4 1 CD H GLU 61 ? ? OE2 H GLU 61 ? ? 1.351 1.252 0.099 0.011 N 5 1 CB H ARG 75 ? ? CG H ARG 75 ? A 1.695 1.521 0.174 0.027 N 6 1 CD H GLU 80 ? ? OE1 H GLU 80 ? ? 1.324 1.252 0.072 0.011 N 7 1 CD H GLU 97 A ? OE2 H GLU 97 A ? 1.342 1.252 0.090 0.011 N 8 1 CD H GLU 164 ? ? OE2 H GLU 164 ? ? 1.330 1.252 0.078 0.011 N 9 1 CD H GLU 217 ? ? OE2 H GLU 217 ? ? 1.324 1.252 0.072 0.011 N 10 1 CD I GLU 18 ? ? OE2 I GLU 18 ? ? 1.339 1.252 0.087 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB L ASP 1 A ? CG L ASP 1 A ? OD2 L ASP 1 A ? 112.31 118.30 -5.99 0.90 N 2 1 CB L ASP 14 ? ? CG L ASP 14 ? ? OD1 L ASP 14 ? ? 123.73 118.30 5.43 0.90 N 3 1 CB L ASP 14 ? ? CG L ASP 14 ? ? OD2 L ASP 14 ? ? 111.94 118.30 -6.36 0.90 N 4 1 N H SER 27 ? ? CA H SER 27 ? ? CB H SER 27 ? ? 121.98 110.50 11.48 1.50 N 5 1 CB H ASP 49 ? ? CG H ASP 49 ? ? OD1 H ASP 49 ? ? 124.64 118.30 6.34 0.90 N 6 1 CB H ASP 49 ? ? CG H ASP 49 ? ? OD2 H ASP 49 ? ? 109.78 118.30 -8.52 0.90 N 7 1 CB H ASP 60 E ? CG H ASP 60 E ? OD2 H ASP 60 E ? 112.24 118.30 -6.06 0.90 N 8 1 NE H ARG 77 A ? CZ H ARG 77 A ? NH1 H ARG 77 A ? 126.59 120.30 6.29 0.50 N 9 1 NE H ARG 77 A ? CZ H ARG 77 A ? NH2 H ARG 77 A ? 114.12 120.30 -6.18 0.50 N 10 1 NE H ARG 93 ? ? CZ H ARG 93 ? ? NH1 H ARG 93 ? ? 123.45 120.30 3.15 0.50 N 11 1 NE H ARG 97 ? ? CZ H ARG 97 ? ? NH1 H ARG 97 ? ? 124.13 120.30 3.83 0.50 N 12 1 NE H ARG 97 ? ? CZ H ARG 97 ? ? NH2 H ARG 97 ? ? 116.58 120.30 -3.72 0.50 N 13 1 CB H ASP 100 ? ? CG H ASP 100 ? ? OD1 H ASP 100 ? ? 125.79 118.30 7.49 0.90 N 14 1 CB H ASP 100 ? ? CG H ASP 100 ? ? OD2 H ASP 100 ? ? 109.30 118.30 -9.00 0.90 N 15 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH1 H ARG 101 ? ? 125.48 120.30 5.18 0.50 N 16 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH2 H ARG 101 ? ? 115.36 120.30 -4.94 0.50 N 17 1 CB H ASP 102 ? ? CG H ASP 102 ? ? OD2 H ASP 102 ? ? 109.79 118.30 -8.51 0.90 N 18 1 CB H ASP 125 ? ? CG H ASP 125 ? ? OD1 H ASP 125 ? ? 124.05 118.30 5.75 0.90 N 19 1 CB H ASP 125 ? ? CG H ASP 125 ? ? OD2 H ASP 125 ? ? 111.51 118.30 -6.79 0.90 N 20 1 CB H ASP 170 ? ? CG H ASP 170 ? ? OD1 H ASP 170 ? ? 124.34 118.30 6.04 0.90 N 21 1 CB H ASP 186 A ? CG H ASP 186 A ? OD1 H ASP 186 A ? 112.87 118.30 -5.43 0.90 N 22 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH1 H ARG 206 ? ? 125.82 120.30 5.52 0.50 N 23 1 NE H ARG 206 ? ? CZ H ARG 206 ? ? NH2 H ARG 206 ? ? 116.13 120.30 -4.17 0.50 N 24 1 CB H ASP 221 ? ? CG H ASP 221 ? ? OD1 H ASP 221 ? ? 123.71 118.30 5.41 0.90 N 25 1 NE H ARG 221 A ? CZ H ARG 221 A ? NH2 H ARG 221 A ? 117.11 120.30 -3.19 0.50 N 26 1 CB I ASP 16 ? ? CG I ASP 16 ? ? OD1 I ASP 16 ? ? 124.16 118.30 5.86 0.90 N 27 1 C I ILE 20 ? ? N I PRO 21 ? ? CA I PRO 21 ? ? 128.44 119.30 9.14 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER L 1 E ? 51.99 5.63 2 1 PHE L 7 ? ? -130.23 -84.68 3 1 TYR L 14 J ? -79.04 24.28 4 1 ILE L 14 K ? 70.78 31.63 5 1 ASP L 14 L ? 93.59 104.12 6 1 TYR H 60 A ? -159.11 75.00 7 1 HIS H 71 ? ? -133.75 -60.04 8 1 GLU H 77 ? ? -69.09 80.79 9 1 GLU H 97 A ? -132.99 -63.77 10 1 LYS H 186 D ? -170.53 132.00 11 1 TYR I 24 ? ? -16.96 -38.59 12 1 ALC I 25 ? ? -58.19 -89.08 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id GLN _pdbx_validate_planes.auth_asym_id H _pdbx_validate_planes.auth_seq_id 156 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.085 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C2 ? H NAG 400 ? PLANAR . 2 1 C4 ? H NAG 400 ? PLANAR . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 L GLU 1 C CB ? A GLU 6 CB 2 1 Y 0 L GLU 1 C CG ? A GLU 6 CG 3 1 Y 0 L GLU 1 C CD ? A GLU 6 CD 4 1 Y 0 L GLU 1 C OE1 ? A GLU 6 OE1 5 1 Y 0 L GLU 1 C OE2 ? A GLU 6 OE2 6 1 Y 0 L GLU 13 ? CD ? A GLU 21 CD 7 1 Y 0 L GLU 13 ? OE1 ? A GLU 21 OE1 8 1 Y 0 L GLU 13 ? OE2 ? A GLU 21 OE2 9 1 Y 0 L LYS 14 A CG ? A LYS 23 CG 10 1 Y 0 L LYS 14 A CD ? A LYS 23 CD 11 1 Y 0 L LYS 14 A CE ? A LYS 23 CE 12 1 Y 0 L LYS 14 A NZ ? A LYS 23 NZ 13 1 Y 0 L ARG 14 D CD ? A ARG 26 CD 14 1 Y 0 L ARG 14 D NE ? A ARG 26 NE 15 1 Y 0 L ARG 14 D CZ ? A ARG 26 CZ 16 1 Y 0 L ARG 14 D NH1 ? A ARG 26 NH1 17 1 Y 0 L ARG 14 D NH2 ? A ARG 26 NH2 18 1 Y 0 L GLU 14 H OE1 ? A GLU 30 OE1 19 1 Y 0 L GLU 14 H OE2 ? A GLU 30 OE2 20 1 Y 0 L ILE 14 K C ? A ILE 33 C 21 1 Y 0 L ILE 14 K O ? A ILE 33 O 22 1 Y 0 H GLU 18 ? CD ? B GLU 3 CD 23 1 Y 0 H GLU 18 ? OE1 ? B GLU 3 OE1 24 1 Y 0 H GLU 18 ? OE2 ? B GLU 3 OE2 25 1 Y 0 H SER 36 A CB ? B SER 22 CB 26 1 Y 0 H SER 36 A OG ? B SER 22 OG 27 1 Y 0 H GLN 38 ? CD ? B GLN 24 CD 28 1 Y 0 H GLN 38 ? OE1 ? B GLN 24 OE1 29 1 Y 0 H GLN 38 ? NE2 ? B GLN 24 NE2 30 1 Y 0 H GLU 39 ? CD ? B GLU 25 CD 31 1 Y 0 H GLU 39 ? OE1 ? B GLU 25 OE1 32 1 Y 0 H GLU 39 ? OE2 ? B GLU 25 OE2 33 1 Y 0 H ARG 50 ? CG ? B ARG 36 CG 34 1 Y 0 H ARG 50 ? CD ? B ARG 36 CD 35 1 Y 0 H ARG 50 ? NE ? B ARG 36 NE 36 1 Y 0 H ARG 50 ? CZ ? B ARG 36 CZ 37 1 Y 0 H ARG 50 ? NH1 ? B ARG 36 NH1 38 1 Y 0 H ARG 50 ? NH2 ? B ARG 36 NH2 39 1 Y 0 H ASN 62 ? CG ? B ASN 57 CG 40 1 Y 0 H ASN 62 ? OD1 ? B ASN 57 OD1 41 1 Y 0 H ASN 62 ? ND2 ? B ASN 57 ND2 42 1 Y 0 H LYS 81 ? CD ? B LYS 77 CD 43 1 Y 0 H LYS 81 ? CE ? B LYS 77 CE 44 1 Y 0 H LYS 81 ? NZ ? B LYS 77 NZ 45 1 Y 0 H GLU 86 ? OE1 ? B GLU 82 OE1 46 1 Y 0 H GLU 86 ? OE2 ? B GLU 82 OE2 47 1 Y 0 H LYS 87 ? CD ? B LYS 83 CD 48 1 Y 0 H LYS 87 ? CE ? B LYS 83 CE 49 1 Y 0 H LYS 87 ? NZ ? B LYS 83 NZ 50 1 Y 0 H LYS 107 ? CE ? B LYS 104 CE 51 1 Y 0 H LYS 107 ? NZ ? B LYS 104 NZ 52 1 Y 0 H LYS 109 ? CE ? B LYS 106 CE 53 1 Y 0 H LYS 109 ? NZ ? B LYS 106 NZ 54 1 Y 0 H LYS 110 ? CG ? B LYS 107 CG 55 1 Y 0 H LYS 110 ? CD ? B LYS 107 CD 56 1 Y 0 H LYS 110 ? CE ? B LYS 107 CE 57 1 Y 0 H LYS 110 ? NZ ? B LYS 107 NZ 58 1 Y 0 H ARG 126 ? CD ? B ARG 123 CD 59 1 Y 0 H ARG 126 ? NE ? B ARG 123 NE 60 1 Y 0 H ARG 126 ? CZ ? B ARG 123 CZ 61 1 Y 0 H ARG 126 ? NH1 ? B ARG 123 NH1 62 1 Y 0 H ARG 126 ? NH2 ? B ARG 123 NH2 63 1 Y 0 H GLU 127 ? CG ? B GLU 124 CG 64 1 Y 0 H GLU 127 ? CD ? B GLU 124 CD 65 1 Y 0 H GLU 127 ? OE1 ? B GLU 124 OE1 66 1 Y 0 H GLU 127 ? OE2 ? B GLU 124 OE2 67 1 Y 0 H GLN 131 ? OE1 ? B GLN 131 OE1 68 1 Y 0 H GLN 131 ? NE2 ? B GLN 131 NE2 69 1 Y 0 H LYS 145 ? CE ? B LYS 145 CE 70 1 Y 0 H LYS 145 ? NZ ? B LYS 145 NZ 71 1 Y 0 H THR 147 ? O ? B THR 147 O 72 1 Y 0 H THR 147 ? CB ? B THR 147 CB 73 1 Y 0 H THR 147 ? OG1 ? B THR 147 OG1 74 1 Y 0 H THR 147 ? CG2 ? B THR 147 CG2 75 1 Y 0 H GLY 150 ? N ? B GLY 155 N 76 1 Y 0 H GLN 151 ? CG ? B GLN 156 CG 77 1 Y 0 H GLN 151 ? CD ? B GLN 156 CD 78 1 Y 0 H GLN 151 ? OE1 ? B GLN 156 OE1 79 1 Y 0 H GLN 151 ? NE2 ? B GLN 156 NE2 80 1 Y 0 H LYS 169 ? CD ? B LYS 174 CD 81 1 Y 0 H LYS 169 ? CE ? B LYS 174 CE 82 1 Y 0 H LYS 169 ? NZ ? B LYS 174 NZ 83 1 Y 0 H ASP 186 A CG ? B ASP 193 CG 84 1 Y 0 H ASP 186 A OD1 ? B ASP 193 OD1 85 1 Y 0 H ASP 186 A OD2 ? B ASP 193 OD2 86 1 Y 0 H LYS 186 D CD ? B LYS 196 CD 87 1 Y 0 H LYS 186 D CE ? B LYS 196 CE 88 1 Y 0 H LYS 186 D NZ ? B LYS 196 NZ 89 1 Y 0 H GLU 192 ? CD ? B GLU 202 CD 90 1 Y 0 H GLU 192 ? OE1 ? B GLU 202 OE1 91 1 Y 0 H GLU 192 ? OE2 ? B GLU 202 OE2 92 1 Y 0 H ASN 205 ? OD1 ? B ASN 217 OD1 93 1 Y 0 H ASN 205 ? ND2 ? B ASN 217 ND2 94 1 Y 0 H ARG 233 ? CZ ? B ARG 245 CZ 95 1 Y 0 H ARG 233 ? NH1 ? B ARG 245 NH1 96 1 Y 0 H LYS 235 ? NZ ? B LYS 247 NZ 97 1 Y 0 H LYS 236 ? CG ? B LYS 248 CG 98 1 Y 0 H LYS 236 ? CD ? B LYS 248 CD 99 1 Y 0 H LYS 236 ? CE ? B LYS 248 CE 100 1 Y 0 H LYS 236 ? NZ ? B LYS 248 NZ 101 1 Y 0 H TRP 237 ? N ? B TRP 249 N 102 1 Y 0 H GLN 239 ? CG ? B GLN 251 CG 103 1 Y 0 H GLN 239 ? CD ? B GLN 251 CD 104 1 Y 0 H GLN 239 ? OE1 ? B GLN 251 OE1 105 1 Y 0 H GLN 239 ? NE2 ? B GLN 251 NE2 106 1 Y 0 H LYS 240 ? CD ? B LYS 252 CD 107 1 Y 0 H LYS 240 ? CE ? B LYS 252 CE 108 1 Y 0 H LYS 240 ? NZ ? B LYS 252 NZ 109 1 Y 0 H ASP 243 ? CG ? B ASP 255 CG 110 1 Y 0 H ASP 243 ? OD1 ? B ASP 255 OD1 111 1 Y 0 H ASP 243 ? OD2 ? B ASP 255 OD2 112 1 Y 0 H GLN 244 ? CD ? B GLN 256 CD 113 1 Y 0 H GLN 244 ? OE1 ? B GLN 256 OE1 114 1 Y 0 H GLN 244 ? NE2 ? B GLN 256 NE2 115 1 Y 0 H GLY 246 ? C ? B GLY 258 C 116 1 Y 0 H GLY 246 ? O ? B GLY 258 O 117 1 Y 0 I GLU 19 ? CD ? C GLU 19 CD 118 1 Y 0 I GLU 19 ? OE1 ? C GLU 19 OE1 119 1 Y 0 I GLU 19 ? OE2 ? C GLU 19 OE2 120 1 Y 0 I AIB 22 ? CB1 ? C AIB 22 CB1 121 1 Y 0 I AIB 23 ? O ? C AIB 23 O 122 1 Y 0 I AIB 23 ? CB1 ? C AIB 23 CB1 123 1 Y 0 I AIB 23 ? CB2 ? C AIB 23 CB2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 0 L THR 1 H A THR 1 2 1 Y 0 L PHE 1 G A PHE 2 3 1 Y 0 L GLY 1 F A GLY 3 4 1 Y 0 L SER 1 E A SER 4 5 1 Y 0 L GLY 1 D A GLY 5 6 1 Y 0 L ASP 14 L A ASP 34 7 1 Y 0 L GLY 14 M A GLY 35 8 1 Y 0 L ARG 15 ? A ARG 36 9 1 Y 0 H TRP 148 ? B TRP 148 10 1 Y 1 H THR 148 A B THR 149 11 1 Y 1 H ALA 148 B B ALA 150 12 1 Y 1 H ASN 148 C B ASN 151 13 1 Y 1 H VAL 148 D B VAL 152 14 1 Y 1 H GLY 148 E B GLY 153 15 1 Y 1 H LYS 148 F B LYS 154 16 1 Y 0 H GLU 247 ? B GLU 259 17 1 Y 1 I ASP 5 ? C ASP 5 18 1 Y 1 I DAL 6 ? C DAL 6 19 1 Y 1 I GLY 7 ? C GLY 7 20 1 Y 1 I BAL 8 ? C BAL 8 21 1 Y 1 I PRO 9 ? C PRO 9 22 1 Y 1 I GLU 10 ? C GLU 10 23 1 Y 1 I SER 11 ? C SER 11 24 1 Y 1 I HIS 12 ? C HIS 12 25 1 Y 1 I HMF 13 ? C HMF 13 26 1 Y 1 I GLY 14 ? C GLY 14 27 1 Y 1 I GLY 15 ? C GLY 15 28 1 Y 0 I TYR 24 ? C TYR 24 29 1 Y 0 I ALC 25 ? C ALC 25 30 1 Y 0 I DGL 26 ? C DGL 26 31 1 N 0 H NAG 400 ? D NAG ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HAH _pdbx_initial_refinement_model.details 'PDB ENTRY 1HAH (J. VIJAYALAKSHMI ET AL., 1994, PROTEIN SCI. 3,2254-71)' #