data_5GID # _entry.id 5GID # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5GID pdb_00005gid 10.2210/pdb5gid/pdb WWPDB D_1300000826 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2020-02-26 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' diffrn_source 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5GID _pdbx_database_status.recvd_initial_deposition_date 2016-06-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5GIC PDB . unspecified 5GIE PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Asano, L.' 1 'Shimizu, T.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs Lett.' _citation.journal_id_ASTM FEBLAL _citation.journal_id_CSD 0165 _citation.journal_id_ISSN 0014-5793 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 590 _citation.language ? _citation.page_first 3270 _citation.page_last 3279 _citation.title 'Regulation of the vitamin D receptor by vitamin D lactam derivatives.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/1873-3468.12348 _citation.pdbx_database_id_PubMed 27500498 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Asano, L.' 1 ? primary 'Waku, T.' 2 ? primary 'Abe, R.' 3 ? primary 'Kuwabara, N.' 4 ? primary 'Ito, I.' 5 ? primary 'Yanagisawa, J.' 6 ? primary 'Nagasawa, K.' 7 ? primary 'Shimizu, T.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vitamin D3 receptor' 28257.436 1 ? ? 'UNP RESIDUES 124-164,UNP RESIDUES 212-419' ? 2 polymer syn SRC1 1083.347 1 ? ? ? ? 3 non-polymer syn ;(3R,5S)-5-[(2R)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[(2Z)-2-[(3S,5R)-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(4-phenylbutyl)pyrrolidin-2-one ; 575.821 1 ? ? ? ? 4 water nat water 18.015 36 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VDR,1,25-dihydroxyvitamin D3 receptor,Nuclear receptor subfamily 1 group I member 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDL TSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLM AICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKL TPLVLEVFG ; ;LSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDL TSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLM AICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKL TPLVLEVFG ; A ? 2 'polypeptide(L)' no no NHPMLMNLL NHPMLMNLL C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;(3R,5S)-5-[(2R)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[(2Z)-2-[(3S,5R)-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(4-phenylbutyl)pyrrolidin-2-one ; VDP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 SER n 1 3 GLU n 1 4 GLU n 1 5 GLN n 1 6 GLN n 1 7 HIS n 1 8 ILE n 1 9 ILE n 1 10 ALA n 1 11 ILE n 1 12 LEU n 1 13 LEU n 1 14 ASP n 1 15 ALA n 1 16 HIS n 1 17 HIS n 1 18 LYS n 1 19 THR n 1 20 TYR n 1 21 ASP n 1 22 PRO n 1 23 THR n 1 24 TYR n 1 25 ALA n 1 26 ASP n 1 27 PHE n 1 28 ARG n 1 29 ASP n 1 30 PHE n 1 31 ARG n 1 32 PRO n 1 33 PRO n 1 34 VAL n 1 35 ARG n 1 36 MET n 1 37 ASP n 1 38 GLY n 1 39 SER n 1 40 THR n 1 41 GLY n 1 42 SER n 1 43 VAL n 1 44 THR n 1 45 LEU n 1 46 ASP n 1 47 LEU n 1 48 SER n 1 49 PRO n 1 50 LEU n 1 51 SER n 1 52 MET n 1 53 LEU n 1 54 PRO n 1 55 HIS n 1 56 LEU n 1 57 ALA n 1 58 ASP n 1 59 LEU n 1 60 VAL n 1 61 SER n 1 62 TYR n 1 63 SER n 1 64 ILE n 1 65 GLN n 1 66 LYS n 1 67 VAL n 1 68 ILE n 1 69 GLY n 1 70 PHE n 1 71 ALA n 1 72 LYS n 1 73 MET n 1 74 ILE n 1 75 PRO n 1 76 GLY n 1 77 PHE n 1 78 ARG n 1 79 ASP n 1 80 LEU n 1 81 THR n 1 82 SER n 1 83 ASP n 1 84 ASP n 1 85 GLN n 1 86 ILE n 1 87 VAL n 1 88 LEU n 1 89 LEU n 1 90 LYS n 1 91 SER n 1 92 SER n 1 93 ALA n 1 94 ILE n 1 95 GLU n 1 96 VAL n 1 97 ILE n 1 98 MET n 1 99 LEU n 1 100 ARG n 1 101 SER n 1 102 ASN n 1 103 GLN n 1 104 SER n 1 105 PHE n 1 106 THR n 1 107 MET n 1 108 ASP n 1 109 ASP n 1 110 MET n 1 111 SER n 1 112 TRP n 1 113 ASP n 1 114 CYS n 1 115 GLY n 1 116 SER n 1 117 GLN n 1 118 ASP n 1 119 TYR n 1 120 LYS n 1 121 TYR n 1 122 ASP n 1 123 VAL n 1 124 THR n 1 125 ASP n 1 126 VAL n 1 127 SER n 1 128 LYS n 1 129 ALA n 1 130 GLY n 1 131 HIS n 1 132 THR n 1 133 LEU n 1 134 GLU n 1 135 LEU n 1 136 ILE n 1 137 GLU n 1 138 PRO n 1 139 LEU n 1 140 ILE n 1 141 LYS n 1 142 PHE n 1 143 GLN n 1 144 VAL n 1 145 GLY n 1 146 LEU n 1 147 LYS n 1 148 LYS n 1 149 LEU n 1 150 ASN n 1 151 LEU n 1 152 HIS n 1 153 GLU n 1 154 GLU n 1 155 GLU n 1 156 HIS n 1 157 VAL n 1 158 LEU n 1 159 LEU n 1 160 MET n 1 161 ALA n 1 162 ILE n 1 163 CYS n 1 164 ILE n 1 165 VAL n 1 166 SER n 1 167 PRO n 1 168 ASP n 1 169 ARG n 1 170 PRO n 1 171 GLY n 1 172 VAL n 1 173 GLN n 1 174 ASP n 1 175 ALA n 1 176 LYS n 1 177 LEU n 1 178 VAL n 1 179 GLU n 1 180 ALA n 1 181 ILE n 1 182 GLN n 1 183 ASP n 1 184 ARG n 1 185 LEU n 1 186 SER n 1 187 ASN n 1 188 THR n 1 189 LEU n 1 190 GLN n 1 191 THR n 1 192 TYR n 1 193 ILE n 1 194 ARG n 1 195 CYS n 1 196 ARG n 1 197 HIS n 1 198 PRO n 1 199 PRO n 1 200 PRO n 1 201 GLY n 1 202 SER n 1 203 HIS n 1 204 GLN n 1 205 LEU n 1 206 TYR n 1 207 ALA n 1 208 LYS n 1 209 MET n 1 210 ILE n 1 211 GLN n 1 212 LYS n 1 213 LEU n 1 214 ALA n 1 215 ASP n 1 216 LEU n 1 217 ARG n 1 218 SER n 1 219 LEU n 1 220 ASN n 1 221 GLU n 1 222 GLU n 1 223 HIS n 1 224 SER n 1 225 LYS n 1 226 GLN n 1 227 TYR n 1 228 ARG n 1 229 SER n 1 230 LEU n 1 231 SER n 1 232 PHE n 1 233 GLN n 1 234 PRO n 1 235 GLU n 1 236 ASN n 1 237 SER n 1 238 MET n 1 239 LYS n 1 240 LEU n 1 241 THR n 1 242 PRO n 1 243 LEU n 1 244 VAL n 1 245 LEU n 1 246 GLU n 1 247 VAL n 1 248 PHE n 1 249 GLY n 2 1 ASN n 2 2 HIS n 2 3 PRO n 2 4 MET n 2 5 LEU n 2 6 MET n 2 7 ASN n 2 8 LEU n 2 9 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 41 Rat ? 'Vdr, Nr1i1' ? ? ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 42 249 Rat ? 'Vdr, Nr1i1' ? ? ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VDP non-polymer . ;(3R,5S)-5-[(2R)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[(2Z)-2-[(3S,5R)-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(4-phenylbutyl)pyrrolidin-2-one ; ? 'C37 H53 N O4' 575.821 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 124 124 LEU LEU A . n A 1 2 SER 2 125 125 SER SER A . n A 1 3 GLU 3 126 126 GLU GLU A . n A 1 4 GLU 4 127 127 GLU GLU A . n A 1 5 GLN 5 128 128 GLN GLN A . n A 1 6 GLN 6 129 129 GLN GLN A . n A 1 7 HIS 7 130 130 HIS HIS A . n A 1 8 ILE 8 131 131 ILE ILE A . n A 1 9 ILE 9 132 132 ILE ILE A . n A 1 10 ALA 10 133 133 ALA ALA A . n A 1 11 ILE 11 134 134 ILE ILE A . n A 1 12 LEU 12 135 135 LEU LEU A . n A 1 13 LEU 13 136 136 LEU LEU A . n A 1 14 ASP 14 137 137 ASP ASP A . n A 1 15 ALA 15 138 138 ALA ALA A . n A 1 16 HIS 16 139 139 HIS HIS A . n A 1 17 HIS 17 140 140 HIS HIS A . n A 1 18 LYS 18 141 141 LYS LYS A . n A 1 19 THR 19 142 142 THR THR A . n A 1 20 TYR 20 143 143 TYR TYR A . n A 1 21 ASP 21 144 144 ASP ASP A . n A 1 22 PRO 22 145 145 PRO PRO A . n A 1 23 THR 23 146 146 THR THR A . n A 1 24 TYR 24 147 147 TYR TYR A . n A 1 25 ALA 25 148 148 ALA ALA A . n A 1 26 ASP 26 149 149 ASP ASP A . n A 1 27 PHE 27 150 150 PHE PHE A . n A 1 28 ARG 28 151 151 ARG ARG A . n A 1 29 ASP 29 152 152 ASP ASP A . n A 1 30 PHE 30 153 153 PHE PHE A . n A 1 31 ARG 31 154 154 ARG ARG A . n A 1 32 PRO 32 155 155 PRO PRO A . n A 1 33 PRO 33 156 156 PRO PRO A . n A 1 34 VAL 34 157 157 VAL VAL A . n A 1 35 ARG 35 158 158 ARG ARG A . n A 1 36 MET 36 159 159 MET MET A . n A 1 37 ASP 37 160 ? ? ? A . n A 1 38 GLY 38 161 ? ? ? A . n A 1 39 SER 39 162 ? ? ? A . n A 1 40 THR 40 163 ? ? ? A . n A 1 41 GLY 41 164 ? ? ? A . n A 1 42 SER 42 212 ? ? ? A . n A 1 43 VAL 43 213 ? ? ? A . n A 1 44 THR 44 214 ? ? ? A . n A 1 45 LEU 45 215 ? ? ? A . n A 1 46 ASP 46 216 ? ? ? A . n A 1 47 LEU 47 217 ? ? ? A . n A 1 48 SER 48 218 ? ? ? A . n A 1 49 PRO 49 219 219 PRO PRO A . n A 1 50 LEU 50 220 220 LEU LEU A . n A 1 51 SER 51 221 221 SER SER A . n A 1 52 MET 52 222 222 MET MET A . n A 1 53 LEU 53 223 223 LEU LEU A . n A 1 54 PRO 54 224 224 PRO PRO A . n A 1 55 HIS 55 225 225 HIS HIS A . n A 1 56 LEU 56 226 226 LEU LEU A . n A 1 57 ALA 57 227 227 ALA ALA A . n A 1 58 ASP 58 228 228 ASP ASP A . n A 1 59 LEU 59 229 229 LEU LEU A . n A 1 60 VAL 60 230 230 VAL VAL A . n A 1 61 SER 61 231 231 SER SER A . n A 1 62 TYR 62 232 232 TYR TYR A . n A 1 63 SER 63 233 233 SER SER A . n A 1 64 ILE 64 234 234 ILE ILE A . n A 1 65 GLN 65 235 235 GLN GLN A . n A 1 66 LYS 66 236 236 LYS LYS A . n A 1 67 VAL 67 237 237 VAL VAL A . n A 1 68 ILE 68 238 238 ILE ILE A . n A 1 69 GLY 69 239 239 GLY GLY A . n A 1 70 PHE 70 240 240 PHE PHE A . n A 1 71 ALA 71 241 241 ALA ALA A . n A 1 72 LYS 72 242 242 LYS LYS A . n A 1 73 MET 73 243 243 MET MET A . n A 1 74 ILE 74 244 244 ILE ILE A . n A 1 75 PRO 75 245 245 PRO PRO A . n A 1 76 GLY 76 246 246 GLY GLY A . n A 1 77 PHE 77 247 247 PHE PHE A . n A 1 78 ARG 78 248 248 ARG ARG A . n A 1 79 ASP 79 249 249 ASP ASP A . n A 1 80 LEU 80 250 250 LEU LEU A . n A 1 81 THR 81 251 251 THR THR A . n A 1 82 SER 82 252 252 SER SER A . n A 1 83 ASP 83 253 253 ASP ASP A . n A 1 84 ASP 84 254 254 ASP ASP A . n A 1 85 GLN 85 255 255 GLN GLN A . n A 1 86 ILE 86 256 256 ILE ILE A . n A 1 87 VAL 87 257 257 VAL VAL A . n A 1 88 LEU 88 258 258 LEU LEU A . n A 1 89 LEU 89 259 259 LEU LEU A . n A 1 90 LYS 90 260 260 LYS LYS A . n A 1 91 SER 91 261 261 SER SER A . n A 1 92 SER 92 262 262 SER SER A . n A 1 93 ALA 93 263 263 ALA ALA A . n A 1 94 ILE 94 264 264 ILE ILE A . n A 1 95 GLU 95 265 265 GLU GLU A . n A 1 96 VAL 96 266 266 VAL VAL A . n A 1 97 ILE 97 267 267 ILE ILE A . n A 1 98 MET 98 268 268 MET MET A . n A 1 99 LEU 99 269 269 LEU LEU A . n A 1 100 ARG 100 270 270 ARG ARG A . n A 1 101 SER 101 271 271 SER SER A . n A 1 102 ASN 102 272 272 ASN ASN A . n A 1 103 GLN 103 273 273 GLN GLN A . n A 1 104 SER 104 274 274 SER SER A . n A 1 105 PHE 105 275 275 PHE PHE A . n A 1 106 THR 106 276 276 THR THR A . n A 1 107 MET 107 277 277 MET MET A . n A 1 108 ASP 108 278 278 ASP ASP A . n A 1 109 ASP 109 279 279 ASP ASP A . n A 1 110 MET 110 280 280 MET MET A . n A 1 111 SER 111 281 281 SER SER A . n A 1 112 TRP 112 282 282 TRP TRP A . n A 1 113 ASP 113 283 283 ASP ASP A . n A 1 114 CYS 114 284 284 CYS CYS A . n A 1 115 GLY 115 285 285 GLY GLY A . n A 1 116 SER 116 286 286 SER SER A . n A 1 117 GLN 117 287 287 GLN GLN A . n A 1 118 ASP 118 288 288 ASP ASP A . n A 1 119 TYR 119 289 289 TYR TYR A . n A 1 120 LYS 120 290 290 LYS LYS A . n A 1 121 TYR 121 291 291 TYR TYR A . n A 1 122 ASP 122 292 292 ASP ASP A . n A 1 123 VAL 123 293 293 VAL VAL A . n A 1 124 THR 124 294 294 THR THR A . n A 1 125 ASP 125 295 295 ASP ASP A . n A 1 126 VAL 126 296 296 VAL VAL A . n A 1 127 SER 127 297 297 SER SER A . n A 1 128 LYS 128 298 298 LYS LYS A . n A 1 129 ALA 129 299 299 ALA ALA A . n A 1 130 GLY 130 300 300 GLY GLY A . n A 1 131 HIS 131 301 301 HIS HIS A . n A 1 132 THR 132 302 302 THR THR A . n A 1 133 LEU 133 303 303 LEU LEU A . n A 1 134 GLU 134 304 304 GLU GLU A . n A 1 135 LEU 135 305 305 LEU LEU A . n A 1 136 ILE 136 306 306 ILE ILE A . n A 1 137 GLU 137 307 307 GLU GLU A . n A 1 138 PRO 138 308 308 PRO PRO A . n A 1 139 LEU 139 309 309 LEU LEU A . n A 1 140 ILE 140 310 310 ILE ILE A . n A 1 141 LYS 141 311 311 LYS LYS A . n A 1 142 PHE 142 312 312 PHE PHE A . n A 1 143 GLN 143 313 313 GLN GLN A . n A 1 144 VAL 144 314 314 VAL VAL A . n A 1 145 GLY 145 315 315 GLY GLY A . n A 1 146 LEU 146 316 316 LEU LEU A . n A 1 147 LYS 147 317 317 LYS LYS A . n A 1 148 LYS 148 318 318 LYS LYS A . n A 1 149 LEU 149 319 319 LEU LEU A . n A 1 150 ASN 150 320 320 ASN ASN A . n A 1 151 LEU 151 321 321 LEU LEU A . n A 1 152 HIS 152 322 322 HIS HIS A . n A 1 153 GLU 153 323 323 GLU GLU A . n A 1 154 GLU 154 324 324 GLU GLU A . n A 1 155 GLU 155 325 325 GLU GLU A . n A 1 156 HIS 156 326 326 HIS HIS A . n A 1 157 VAL 157 327 327 VAL VAL A . n A 1 158 LEU 158 328 328 LEU LEU A . n A 1 159 LEU 159 329 329 LEU LEU A . n A 1 160 MET 160 330 330 MET MET A . n A 1 161 ALA 161 331 331 ALA ALA A . n A 1 162 ILE 162 332 332 ILE ILE A . n A 1 163 CYS 163 333 333 CYS CYS A . n A 1 164 ILE 164 334 334 ILE ILE A . n A 1 165 VAL 165 335 335 VAL VAL A . n A 1 166 SER 166 336 336 SER SER A . n A 1 167 PRO 167 337 337 PRO PRO A . n A 1 168 ASP 168 338 338 ASP ASP A . n A 1 169 ARG 169 339 339 ARG ARG A . n A 1 170 PRO 170 340 340 PRO PRO A . n A 1 171 GLY 171 341 341 GLY GLY A . n A 1 172 VAL 172 342 342 VAL VAL A . n A 1 173 GLN 173 343 343 GLN GLN A . n A 1 174 ASP 174 344 344 ASP ASP A . n A 1 175 ALA 175 345 345 ALA ALA A . n A 1 176 LYS 176 346 346 LYS LYS A . n A 1 177 LEU 177 347 347 LEU LEU A . n A 1 178 VAL 178 348 348 VAL VAL A . n A 1 179 GLU 179 349 349 GLU GLU A . n A 1 180 ALA 180 350 350 ALA ALA A . n A 1 181 ILE 181 351 351 ILE ILE A . n A 1 182 GLN 182 352 352 GLN GLN A . n A 1 183 ASP 183 353 353 ASP ASP A . n A 1 184 ARG 184 354 354 ARG ARG A . n A 1 185 LEU 185 355 355 LEU LEU A . n A 1 186 SER 186 356 356 SER SER A . n A 1 187 ASN 187 357 357 ASN ASN A . n A 1 188 THR 188 358 358 THR THR A . n A 1 189 LEU 189 359 359 LEU LEU A . n A 1 190 GLN 190 360 360 GLN GLN A . n A 1 191 THR 191 361 361 THR THR A . n A 1 192 TYR 192 362 362 TYR TYR A . n A 1 193 ILE 193 363 363 ILE ILE A . n A 1 194 ARG 194 364 364 ARG ARG A . n A 1 195 CYS 195 365 365 CYS CYS A . n A 1 196 ARG 196 366 366 ARG ARG A . n A 1 197 HIS 197 367 367 HIS HIS A . n A 1 198 PRO 198 368 368 PRO PRO A . n A 1 199 PRO 199 369 369 PRO PRO A . n A 1 200 PRO 200 370 370 PRO PRO A . n A 1 201 GLY 201 371 371 GLY GLY A . n A 1 202 SER 202 372 372 SER SER A . n A 1 203 HIS 203 373 373 HIS HIS A . n A 1 204 GLN 204 374 374 GLN GLN A . n A 1 205 LEU 205 375 375 LEU LEU A . n A 1 206 TYR 206 376 376 TYR TYR A . n A 1 207 ALA 207 377 377 ALA ALA A . n A 1 208 LYS 208 378 378 LYS LYS A . n A 1 209 MET 209 379 379 MET MET A . n A 1 210 ILE 210 380 380 ILE ILE A . n A 1 211 GLN 211 381 381 GLN GLN A . n A 1 212 LYS 212 382 382 LYS LYS A . n A 1 213 LEU 213 383 383 LEU LEU A . n A 1 214 ALA 214 384 384 ALA ALA A . n A 1 215 ASP 215 385 385 ASP ASP A . n A 1 216 LEU 216 386 386 LEU LEU A . n A 1 217 ARG 217 387 387 ARG ARG A . n A 1 218 SER 218 388 388 SER SER A . n A 1 219 LEU 219 389 389 LEU LEU A . n A 1 220 ASN 220 390 390 ASN ASN A . n A 1 221 GLU 221 391 391 GLU GLU A . n A 1 222 GLU 222 392 392 GLU GLU A . n A 1 223 HIS 223 393 393 HIS HIS A . n A 1 224 SER 224 394 394 SER SER A . n A 1 225 LYS 225 395 395 LYS LYS A . n A 1 226 GLN 226 396 396 GLN GLN A . n A 1 227 TYR 227 397 397 TYR TYR A . n A 1 228 ARG 228 398 398 ARG ARG A . n A 1 229 SER 229 399 399 SER SER A . n A 1 230 LEU 230 400 400 LEU LEU A . n A 1 231 SER 231 401 401 SER SER A . n A 1 232 PHE 232 402 402 PHE PHE A . n A 1 233 GLN 233 403 403 GLN GLN A . n A 1 234 PRO 234 404 404 PRO PRO A . n A 1 235 GLU 235 405 405 GLU GLU A . n A 1 236 ASN 236 406 406 ASN ASN A . n A 1 237 SER 237 407 407 SER SER A . n A 1 238 MET 238 408 408 MET MET A . n A 1 239 LYS 239 409 409 LYS LYS A . n A 1 240 LEU 240 410 410 LEU LEU A . n A 1 241 THR 241 411 411 THR THR A . n A 1 242 PRO 242 412 412 PRO PRO A . n A 1 243 LEU 243 413 413 LEU LEU A . n A 1 244 VAL 244 414 414 VAL VAL A . n A 1 245 LEU 245 415 415 LEU LEU A . n A 1 246 GLU 246 416 416 GLU GLU A . n A 1 247 VAL 247 417 417 VAL VAL A . n A 1 248 PHE 248 418 418 PHE PHE A . n A 1 249 GLY 249 419 419 GLY GLY A . n B 2 1 ASN 1 626 626 ASN ASN C . n B 2 2 HIS 2 627 627 HIS HIS C . n B 2 3 PRO 3 628 628 PRO PRO C . n B 2 4 MET 4 629 629 MET MET C . n B 2 5 LEU 5 630 630 LEU LEU C . n B 2 6 MET 6 631 631 MET MET C . n B 2 7 ASN 7 632 632 ASN ASN C . n B 2 8 LEU 8 633 633 LEU LEU C . n B 2 9 LEU 9 634 634 LEU LEU C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VDP 1 501 1 VDP DpL A . D 4 HOH 1 601 43 HOH HOH A . D 4 HOH 2 602 18 HOH HOH A . D 4 HOH 3 603 13 HOH HOH A . D 4 HOH 4 604 19 HOH HOH A . D 4 HOH 5 605 21 HOH HOH A . D 4 HOH 6 606 9 HOH HOH A . D 4 HOH 7 607 22 HOH HOH A . D 4 HOH 8 608 2 HOH HOH A . D 4 HOH 9 609 11 HOH HOH A . D 4 HOH 10 610 29 HOH HOH A . D 4 HOH 11 611 17 HOH HOH A . D 4 HOH 12 612 30 HOH HOH A . D 4 HOH 13 613 5 HOH HOH A . D 4 HOH 14 614 10 HOH HOH A . D 4 HOH 15 615 20 HOH HOH A . D 4 HOH 16 616 3 HOH HOH A . D 4 HOH 17 617 24 HOH HOH A . D 4 HOH 18 618 1 HOH HOH A . D 4 HOH 19 619 41 HOH HOH A . D 4 HOH 20 620 6 HOH HOH A . D 4 HOH 21 621 26 HOH HOH A . D 4 HOH 22 622 7 HOH HOH A . D 4 HOH 23 623 14 HOH HOH A . D 4 HOH 24 624 38 HOH HOH A . D 4 HOH 25 625 16 HOH HOH A . D 4 HOH 26 626 39 HOH HOH A . D 4 HOH 27 627 45 HOH HOH A . D 4 HOH 28 628 44 HOH HOH A . D 4 HOH 29 629 15 HOH HOH A . D 4 HOH 30 630 31 HOH HOH A . D 4 HOH 31 631 46 HOH HOH A . D 4 HOH 32 632 27 HOH HOH A . D 4 HOH 33 633 36 HOH HOH A . D 4 HOH 34 634 4 HOH HOH A . D 4 HOH 35 635 32 HOH HOH A . E 4 HOH 1 701 25 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 126 ? CG ? A GLU 3 CG 2 1 Y 1 A GLU 126 ? CD ? A GLU 3 CD 3 1 Y 1 A GLU 126 ? OE1 ? A GLU 3 OE1 4 1 Y 1 A GLU 126 ? OE2 ? A GLU 3 OE2 5 1 Y 1 A ARG 151 ? CG ? A ARG 28 CG 6 1 Y 1 A ARG 151 ? CD ? A ARG 28 CD 7 1 Y 1 A ARG 151 ? NE ? A ARG 28 NE 8 1 Y 1 A ARG 151 ? CZ ? A ARG 28 CZ 9 1 Y 1 A ARG 151 ? NH1 ? A ARG 28 NH1 10 1 Y 1 A ARG 151 ? NH2 ? A ARG 28 NH2 11 1 Y 1 A MET 159 ? CG ? A MET 36 CG 12 1 Y 1 A MET 159 ? SD ? A MET 36 SD 13 1 Y 1 A MET 159 ? CE ? A MET 36 CE 14 1 Y 1 A ARG 248 ? CG ? A ARG 78 CG 15 1 Y 1 A ARG 248 ? CD ? A ARG 78 CD 16 1 Y 1 A ARG 248 ? NE ? A ARG 78 NE 17 1 Y 1 A ARG 248 ? CZ ? A ARG 78 CZ 18 1 Y 1 A ARG 248 ? NH1 ? A ARG 78 NH1 19 1 Y 1 A ARG 248 ? NH2 ? A ARG 78 NH2 20 1 Y 1 A ASP 249 ? CG ? A ASP 79 CG 21 1 Y 1 A ASP 249 ? OD1 ? A ASP 79 OD1 22 1 Y 1 A ASP 249 ? OD2 ? A ASP 79 OD2 23 1 Y 1 A GLN 287 ? CG ? A GLN 117 CG 24 1 Y 1 A GLN 287 ? CD ? A GLN 117 CD 25 1 Y 1 A GLN 287 ? OE1 ? A GLN 117 OE1 26 1 Y 1 A GLN 287 ? NE2 ? A GLN 117 NE2 27 1 Y 1 A ASP 288 ? CG ? A ASP 118 CG 28 1 Y 1 A ASP 288 ? OD1 ? A ASP 118 OD1 29 1 Y 1 A ASP 288 ? OD2 ? A ASP 118 OD2 30 1 Y 1 A LYS 290 ? CG ? A LYS 120 CG 31 1 Y 1 A LYS 290 ? CD ? A LYS 120 CD 32 1 Y 1 A LYS 290 ? CE ? A LYS 120 CE 33 1 Y 1 A LYS 290 ? NZ ? A LYS 120 NZ 34 1 Y 1 A LYS 298 ? CG ? A LYS 128 CG 35 1 Y 1 A LYS 298 ? CD ? A LYS 128 CD 36 1 Y 1 A LYS 298 ? CE ? A LYS 128 CE 37 1 Y 1 A LYS 298 ? NZ ? A LYS 128 NZ 38 1 Y 1 A GLN 343 ? CG ? A GLN 173 CG 39 1 Y 1 A GLN 343 ? CD ? A GLN 173 CD 40 1 Y 1 A GLN 343 ? OE1 ? A GLN 173 OE1 41 1 Y 1 A GLN 343 ? NE2 ? A GLN 173 NE2 42 1 Y 1 A LYS 346 ? CG ? A LYS 176 CG 43 1 Y 1 A LYS 346 ? CD ? A LYS 176 CD 44 1 Y 1 A LYS 346 ? CE ? A LYS 176 CE 45 1 Y 1 A LYS 346 ? NZ ? A LYS 176 NZ 46 1 Y 1 A GLU 349 ? CG ? A GLU 179 CG 47 1 Y 1 A GLU 349 ? CD ? A GLU 179 CD 48 1 Y 1 A GLU 349 ? OE1 ? A GLU 179 OE1 49 1 Y 1 A GLU 349 ? OE2 ? A GLU 179 OE2 50 1 Y 1 A ARG 364 ? CG ? A ARG 194 CG 51 1 Y 1 A ARG 364 ? CD ? A ARG 194 CD 52 1 Y 1 A ARG 364 ? NE ? A ARG 194 NE 53 1 Y 1 A ARG 364 ? CZ ? A ARG 194 CZ 54 1 Y 1 A ARG 364 ? NH1 ? A ARG 194 NH1 55 1 Y 1 A ARG 364 ? NH2 ? A ARG 194 NH2 56 1 Y 1 A ARG 398 ? CG ? A ARG 228 CG 57 1 Y 1 A ARG 398 ? CD ? A ARG 228 CD 58 1 Y 1 A ARG 398 ? NE ? A ARG 228 NE 59 1 Y 1 A ARG 398 ? CZ ? A ARG 228 CZ 60 1 Y 1 A ARG 398 ? NH1 ? A ARG 228 NH1 61 1 Y 1 A ARG 398 ? NH2 ? A ARG 228 NH2 62 1 Y 1 A GLN 403 ? CG ? A GLN 233 CG 63 1 Y 1 A GLN 403 ? CD ? A GLN 233 CD 64 1 Y 1 A GLN 403 ? OE1 ? A GLN 233 OE1 65 1 Y 1 A GLN 403 ? NE2 ? A GLN 233 NE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 96.46 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5GID _cell.details ? _cell.formula_units_Z ? _cell.length_a 154.510 _cell.length_a_esd ? _cell.length_b 42.345 _cell.length_b_esd ? _cell.length_c 42.320 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GID _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5GID _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.33 _exptl_crystal.description 'THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl, PEG 8000, NaCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5GID _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 41 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14860 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.33 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5GID _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.151 _refine.ls_d_res_low 40.821 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14860 _refine.ls_number_reflns_R_free 2817 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.14 _refine.ls_percent_reflns_R_free 10.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2020 _refine.ls_R_factor_R_free 0.2333 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1986 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.55 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.27 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1951 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 1987 _refine_hist.d_res_high 2.151 _refine_hist.d_res_low 40.821 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 1996 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.879 ? 2716 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.351 ? 1222 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.042 ? 316 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 343 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.1512 2.1883 . . 132 1174 93.00 . . . 0.4065 . 0.3693 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1883 2.2281 . . 155 1340 99.00 . . . 0.3550 . 0.3375 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2281 2.2709 . . 133 1236 98.00 . . . 0.2980 . 0.3206 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2709 2.3173 . . 142 1286 99.00 . . . 0.3693 . 0.3071 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3173 2.3677 . . 143 1298 98.00 . . . 0.3316 . 0.2885 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3677 2.4227 . . 139 1277 99.00 . . . 0.3302 . 0.2869 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4227 2.4833 . . 144 1312 99.00 . . . 0.2821 . 0.2652 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4833 2.5505 . . 138 1263 99.00 . . . 0.2089 . 0.2515 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5505 2.6255 . . 153 1324 99.00 . . . 0.2779 . 0.2355 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6255 2.7102 . . 140 1257 99.00 . . . 0.3169 . 0.2334 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7102 2.8071 . . 143 1286 99.00 . . . 0.2683 . 0.2430 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8071 2.9194 . . 140 1251 98.00 . . . 0.3014 . 0.2217 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9194 3.0523 . . 149 1314 98.00 . . . 0.2991 . 0.2278 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0523 3.2131 . . 136 1258 98.00 . . . 0.2767 . 0.2368 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2131 3.4143 . . 140 1245 97.00 . . . 0.2549 . 0.2169 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4143 3.6778 . . 140 1259 97.00 . . . 0.2209 . 0.1793 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6778 4.0476 . . 138 1244 95.00 . . . 0.1895 . 0.1627 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0476 4.6326 . . 143 1242 95.00 . . . 0.1709 . 0.1298 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.6326 5.8339 . . 133 1247 95.00 . . . 0.1833 . 0.1477 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.8339 40.8282 . . 136 1169 90.00 . . . 0.1720 . 0.1621 . . . . . . . . . . # _struct.entry_id 5GID _struct.title 'Crystal structure of VDR in complex with DLAM-4 (C2 form)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5GID _struct_keywords.text 'nuclear receptor, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP VDR_RAT P13053 ? 1 LSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMDGSTG 124 2 UNP VDR_RAT P13053 ? 1 ;SVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKY DVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPG SHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFG ; 212 3 PDB 5GID 5GID ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5GID A 1 ? 41 ? P13053 124 ? 164 ? 124 164 2 2 5GID A 42 ? 249 ? P13053 212 ? 419 ? 212 419 3 3 5GID C 1 ? 9 ? 5GID 626 ? 634 ? 626 634 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1000 ? 1 MORE -10 ? 1 'SSA (A^2)' 11170 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 2 ? TYR A 20 ? SER A 125 TYR A 143 1 ? 19 HELX_P HELX_P2 AA2 TYR A 24 ? PHE A 30 ? TYR A 147 PHE A 153 5 ? 7 HELX_P HELX_P3 AA3 MET A 52 ? MET A 73 ? MET A 222 MET A 243 1 ? 22 HELX_P HELX_P4 AA4 THR A 81 ? SER A 101 ? THR A 251 SER A 271 1 ? 21 HELX_P HELX_P5 AA5 ASP A 122 ? SER A 127 ? ASP A 292 SER A 297 1 ? 6 HELX_P HELX_P6 AA6 THR A 132 ? LYS A 148 ? THR A 302 LYS A 318 1 ? 17 HELX_P HELX_P7 AA7 HIS A 152 ? VAL A 165 ? HIS A 322 VAL A 335 1 ? 14 HELX_P HELX_P8 AA8 ALA A 175 ? HIS A 197 ? ALA A 345 HIS A 367 1 ? 23 HELX_P HELX_P9 AA9 GLN A 204 ? PHE A 232 ? GLN A 374 PHE A 402 1 ? 29 HELX_P HELX_P10 AB1 GLN A 233 ? MET A 238 ? GLN A 403 MET A 408 1 ? 6 HELX_P HELX_P11 AB2 THR A 241 ? PHE A 248 ? THR A 411 PHE A 418 1 ? 8 HELX_P HELX_P12 AB3 HIS B 2 ? LEU B 9 ? HIS C 627 LEU C 634 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 199 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 369 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 200 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 370 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.71 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 105 ? THR A 106 ? PHE A 275 THR A 276 AA1 2 SER A 111 ? ASP A 113 ? SER A 281 ASP A 283 AA1 3 LYS A 120 ? TYR A 121 ? LYS A 290 TYR A 291 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 106 ? N THR A 276 O SER A 111 ? O SER A 281 AA1 2 3 N TRP A 112 ? N TRP A 282 O TYR A 121 ? O TYR A 291 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id VDP _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'binding site for residue VDP A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 TYR A 20 ? TYR A 143 . ? 1_555 ? 2 AC1 12 LEU A 50 ? LEU A 220 . ? 1_555 ? 3 AC1 12 SER A 63 ? SER A 233 . ? 1_555 ? 4 AC1 12 ILE A 97 ? ILE A 267 . ? 1_555 ? 5 AC1 12 ARG A 100 ? ARG A 270 . ? 1_555 ? 6 AC1 12 SER A 101 ? SER A 271 . ? 1_555 ? 7 AC1 12 SER A 104 ? SER A 274 . ? 1_555 ? 8 AC1 12 TRP A 112 ? TRP A 282 . ? 1_555 ? 9 AC1 12 THR A 132 ? THR A 302 . ? 1_555 ? 10 AC1 12 HIS A 223 ? HIS A 393 . ? 1_555 ? 11 AC1 12 TYR A 227 ? TYR A 397 . ? 1_555 ? 12 AC1 12 PHE A 248 ? PHE A 418 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 343 ? ? -79.94 -87.62 2 1 PHE A 418 ? ? -80.24 40.19 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -23.0019 6.5165 13.6059 0.4169 0.4381 0.3487 0.0745 -0.0256 -0.0953 6.9644 1.7373 2.8914 0.1247 -0.4951 -0.4985 -0.0405 -1.2053 0.6433 0.5456 0.0098 -0.1198 -0.6184 -0.4370 -0.0466 'X-RAY DIFFRACTION' 2 ? refined -5.1127 10.9202 -8.3285 0.5896 0.7235 0.8475 -0.0495 0.0691 0.2421 7.1116 3.3192 2.9178 -0.7763 0.5110 -0.3260 0.3520 1.5273 1.5942 -0.4657 -0.3636 -0.3039 -0.3702 0.7699 0.1277 'X-RAY DIFFRACTION' 3 ? refined -17.7823 0.9447 3.6163 0.3296 0.3229 0.2977 0.0311 -0.0148 -0.0419 7.6202 1.7913 3.4083 -0.1226 0.0257 -0.1665 0.0140 -0.0723 -0.3205 0.0188 -0.0177 0.0130 -0.0831 -0.0084 0.0353 'X-RAY DIFFRACTION' 4 ? refined -13.5609 11.4953 -9.8189 0.7022 0.7079 0.8290 -0.0783 0.0293 0.0683 4.8192 0.6750 1.5311 -0.7982 -0.3188 -0.8562 0.1648 1.3333 0.6475 -0.6178 0.6819 -0.9784 -1.1134 0.8085 0.0405 'X-RAY DIFFRACTION' 5 ? refined -27.6364 4.1880 -1.8685 0.4257 0.3834 0.3809 0.0521 -0.0178 0.0121 6.1987 1.9458 3.7345 -0.3557 0.0948 -1.2548 -0.0551 0.3698 0.2987 -0.1919 0.0336 0.1127 -0.3144 -0.2068 -0.0375 'X-RAY DIFFRACTION' 6 ? refined -29.4728 -4.8808 2.0374 0.3036 0.3766 0.4554 0.0138 -0.0291 -0.0340 6.4593 1.6926 3.0963 -0.7746 0.4274 0.3502 0.0969 0.1320 -0.9801 0.0117 -0.0303 0.2716 0.1093 -0.3204 0.0234 'X-RAY DIFFRACTION' 7 ? refined -3.8542 -3.6921 -4.3385 0.4284 0.6579 0.4815 0.0362 -0.0201 0.0285 7.9879 2.8524 5.3087 -0.3618 -0.8322 -0.1879 -0.0264 0.9780 -0.5380 -0.5359 -0.3051 -0.2094 0.6404 0.8940 0.2026 'X-RAY DIFFRACTION' 8 ? refined -7.6102 -9.2414 9.8947 0.5747 0.8405 0.8481 0.0698 0.0052 0.1460 8.1645 3.4134 4.2853 0.8034 0.8773 -0.1993 0.2458 -0.3046 -2.5948 -0.1181 -0.7151 -0.0554 0.5948 0.5896 0.1344 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 124 through 152 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 153 through 222 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 223 through 283 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 284 through 301 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 302 through 334 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 335 through 402 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 403 through 419 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 626 through 634 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 160 ? A ASP 37 2 1 Y 1 A GLY 161 ? A GLY 38 3 1 Y 1 A SER 162 ? A SER 39 4 1 Y 1 A THR 163 ? A THR 40 5 1 Y 1 A GLY 164 ? A GLY 41 6 1 Y 1 A SER 212 ? A SER 42 7 1 Y 1 A VAL 213 ? A VAL 43 8 1 Y 1 A THR 214 ? A THR 44 9 1 Y 1 A LEU 215 ? A LEU 45 10 1 Y 1 A ASP 216 ? A ASP 46 11 1 Y 1 A LEU 217 ? A LEU 47 12 1 Y 1 A SER 218 ? A SER 48 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 VDP O3 O N N 391 VDP C25 C N N 392 VDP C26 C N R 393 VDP O4 O N N 394 VDP C24 C N N 395 VDP C27 C N N 396 VDP C23 C N S 397 VDP N28 N N N 398 VDP C28 C N N 399 VDP C29 C N N 400 VDP C30 C N N 401 VDP C31 C N N 402 VDP C32 C Y N 403 VDP C33 C Y N 404 VDP C34 C Y N 405 VDP C35 C Y N 406 VDP C36 C Y N 407 VDP C37 C Y N 408 VDP C22 C N N 409 VDP C20 C N R 410 VDP C21 C N N 411 VDP C16 C N R 412 VDP C11 C N R 413 VDP C18 C N N 414 VDP C9 C N S 415 VDP C15 C N N 416 VDP C17 C N N 417 VDP C12 C N N 418 VDP C13 C N N 419 VDP C14 C N N 420 VDP C8 C N N 421 VDP C7 C N N 422 VDP C6 C N N 423 VDP C5 C N N 424 VDP C4 C N N 425 VDP C3 C N R 426 VDP O2 O N N 427 VDP C2 C N N 428 VDP C1 C N S 429 VDP O1 O N N 430 VDP C10 C N N 431 VDP C19 C N N 432 VDP H1 H N N 433 VDP H2 H N N 434 VDP H3 H N N 435 VDP H4 H N N 436 VDP H5 H N N 437 VDP H6 H N N 438 VDP H7 H N N 439 VDP H8 H N N 440 VDP H9 H N N 441 VDP H10 H N N 442 VDP H11 H N N 443 VDP H12 H N N 444 VDP H13 H N N 445 VDP H14 H N N 446 VDP H15 H N N 447 VDP H16 H N N 448 VDP H17 H N N 449 VDP H18 H N N 450 VDP H19 H N N 451 VDP H20 H N N 452 VDP H21 H N N 453 VDP H22 H N N 454 VDP H23 H N N 455 VDP H24 H N N 456 VDP H25 H N N 457 VDP H26 H N N 458 VDP H27 H N N 459 VDP H28 H N N 460 VDP H29 H N N 461 VDP H30 H N N 462 VDP H31 H N N 463 VDP H32 H N N 464 VDP H33 H N N 465 VDP H34 H N N 466 VDP H35 H N N 467 VDP H36 H N N 468 VDP H37 H N N 469 VDP H38 H N N 470 VDP H39 H N N 471 VDP H40 H N N 472 VDP H41 H N N 473 VDP H42 H N N 474 VDP H43 H N N 475 VDP H44 H N N 476 VDP H45 H N N 477 VDP H46 H N N 478 VDP H47 H N N 479 VDP H48 H N N 480 VDP H49 H N N 481 VDP H50 H N N 482 VDP H51 H N N 483 VDP H52 H N N 484 VDP H53 H N N 485 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 VDP C37 C36 doub Y N 376 VDP C37 C32 sing Y N 377 VDP C36 C35 sing Y N 378 VDP C30 C31 sing N N 379 VDP C30 C29 sing N N 380 VDP C31 C32 sing N N 381 VDP C32 C33 doub Y N 382 VDP C35 C34 doub Y N 383 VDP C29 C28 sing N N 384 VDP C33 C34 sing Y N 385 VDP C28 N28 sing N N 386 VDP N28 C25 sing N N 387 VDP N28 C23 sing N N 388 VDP O3 C25 doub N N 389 VDP C25 C26 sing N N 390 VDP C23 C22 sing N N 391 VDP C23 C27 sing N N 392 VDP C21 C20 sing N N 393 VDP C22 C20 sing N N 394 VDP C20 C16 sing N N 395 VDP C12 C13 sing N N 396 VDP C12 C11 sing N N 397 VDP C24 C26 sing N N 398 VDP C16 C11 sing N N 399 VDP C16 C17 sing N N 400 VDP C26 C27 sing N N 401 VDP C26 O4 sing N N 402 VDP C13 C14 sing N N 403 VDP C11 C9 sing N N 404 VDP C11 C18 sing N N 405 VDP C17 C15 sing N N 406 VDP C9 C15 sing N N 407 VDP C9 C8 sing N N 408 VDP C14 C8 sing N N 409 VDP C8 C7 doub N E 410 VDP C7 C6 sing N N 411 VDP C6 C5 doub N Z 412 VDP C5 C4 sing N N 413 VDP C5 C10 sing N N 414 VDP C4 C3 sing N N 415 VDP C19 C10 doub N N 416 VDP C10 C1 sing N N 417 VDP C3 O2 sing N N 418 VDP C3 C2 sing N N 419 VDP C1 C2 sing N N 420 VDP C1 O1 sing N N 421 VDP O4 H1 sing N N 422 VDP C24 H2 sing N N 423 VDP C24 H3 sing N N 424 VDP C24 H4 sing N N 425 VDP C27 H5 sing N N 426 VDP C27 H6 sing N N 427 VDP C23 H7 sing N N 428 VDP C28 H8 sing N N 429 VDP C28 H9 sing N N 430 VDP C29 H10 sing N N 431 VDP C29 H11 sing N N 432 VDP C30 H12 sing N N 433 VDP C30 H13 sing N N 434 VDP C31 H14 sing N N 435 VDP C31 H15 sing N N 436 VDP C33 H16 sing N N 437 VDP C34 H17 sing N N 438 VDP C35 H18 sing N N 439 VDP C36 H19 sing N N 440 VDP C37 H20 sing N N 441 VDP C22 H21 sing N N 442 VDP C22 H22 sing N N 443 VDP C20 H23 sing N N 444 VDP C21 H24 sing N N 445 VDP C21 H25 sing N N 446 VDP C21 H26 sing N N 447 VDP C16 H27 sing N N 448 VDP C18 H28 sing N N 449 VDP C18 H29 sing N N 450 VDP C18 H30 sing N N 451 VDP C9 H31 sing N N 452 VDP C15 H32 sing N N 453 VDP C15 H33 sing N N 454 VDP C17 H34 sing N N 455 VDP C17 H35 sing N N 456 VDP C12 H36 sing N N 457 VDP C12 H37 sing N N 458 VDP C13 H38 sing N N 459 VDP C13 H39 sing N N 460 VDP C14 H40 sing N N 461 VDP C14 H41 sing N N 462 VDP C7 H42 sing N N 463 VDP C6 H43 sing N N 464 VDP C4 H44 sing N N 465 VDP C4 H45 sing N N 466 VDP C3 H46 sing N N 467 VDP O2 H47 sing N N 468 VDP C2 H48 sing N N 469 VDP C2 H49 sing N N 470 VDP C1 H50 sing N N 471 VDP O1 H51 sing N N 472 VDP C19 H52 sing N N 473 VDP C19 H53 sing N N 474 # _atom_sites.entry_id 5GID _atom_sites.fract_transf_matrix[1][1] 0.006472 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000732 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023616 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023780 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_