data_5H7P # _entry.id 5H7P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5H7P pdb_00005h7p 10.2210/pdb5h7p/pdb WWPDB D_1300002166 ? ? BMRB 25767 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 25767 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5H7P _pdbx_database_status.recvd_initial_deposition_date 2016-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shen, J.' 1 'Yang, Z.' 2 'Wild, C.J.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 38710 _citation.page_last 38710 _citation.title 'NMR studies on the interactions between yeast Vta1 and Did2 during the multivesicular bodies sorting pathway' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/srep38710 _citation.pdbx_database_id_PubMed 27924850 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shen, J.' 1 ? primary 'Yang, Z.' 2 ? primary 'Wang, J.' 3 ? primary 'Zhao, B.' 4 ? primary 'Lan, W.' 5 ? primary 'Wang, C.' 6 ? primary 'Zhang, X.' 7 ? primary 'Wild, C.J.' 8 ? primary 'Liu, M.' 9 ? primary 'Xu, Z.' 10 ? primary 'Cao, C.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vacuolar protein sorting-associated protein VTA1' 19062.043 1 ? ? 'UNP residues 1-167' ? 2 polymer man 'Vacuolar protein-sorting-associated protein 46' 3341.793 1 ? ? 'UNP residues 176-204' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'VPS20-associated protein 1' 2 'Charged multivesicular body protein 1,DOA4-independent degradation protein 2,Fifty two inhibitor 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MASNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMN TLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSK LAKGEIG ; ;MASNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMN TLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSK LAKGEIG ; A ? 2 'polypeptide(L)' no no NVPEIKAKEVNVDDEKEDKLAQRLRALRG NVPEIKAKEVNVDDEKEDKLAQRLRALRG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 ASN n 1 5 ALA n 1 6 ALA n 1 7 ARG n 1 8 VAL n 1 9 VAL n 1 10 ALA n 1 11 THR n 1 12 ALA n 1 13 LYS n 1 14 ASP n 1 15 PHE n 1 16 ASP n 1 17 LYS n 1 18 VAL n 1 19 GLY n 1 20 LEU n 1 21 GLY n 1 22 ILE n 1 23 ILE n 1 24 GLY n 1 25 TYR n 1 26 TYR n 1 27 LEU n 1 28 GLN n 1 29 LEU n 1 30 TYR n 1 31 ALA n 1 32 VAL n 1 33 GLU n 1 34 LEU n 1 35 ILE n 1 36 LEU n 1 37 SER n 1 38 GLU n 1 39 GLU n 1 40 ASP n 1 41 ARG n 1 42 SER n 1 43 GLN n 1 44 GLU n 1 45 MET n 1 46 THR n 1 47 ALA n 1 48 LEU n 1 49 ALA n 1 50 THR n 1 51 GLU n 1 52 LEU n 1 53 LEU n 1 54 ASP n 1 55 THR n 1 56 ILE n 1 57 GLU n 1 58 ALA n 1 59 PHE n 1 60 LYS n 1 61 LYS n 1 62 GLU n 1 63 ILE n 1 64 GLY n 1 65 GLY n 1 66 GLU n 1 67 SER n 1 68 GLU n 1 69 ALA n 1 70 GLU n 1 71 ASP n 1 72 SER n 1 73 ASP n 1 74 LYS n 1 75 SER n 1 76 LEU n 1 77 HIS n 1 78 VAL n 1 79 MET n 1 80 ASN n 1 81 THR n 1 82 LEU n 1 83 ILE n 1 84 HIS n 1 85 ASP n 1 86 GLN n 1 87 GLU n 1 88 LYS n 1 89 ALA n 1 90 LYS n 1 91 ILE n 1 92 TYR n 1 93 MET n 1 94 LEU n 1 95 ASN n 1 96 PHE n 1 97 THR n 1 98 MET n 1 99 SER n 1 100 LEU n 1 101 TYR n 1 102 ASN n 1 103 GLU n 1 104 LYS n 1 105 LEU n 1 106 LYS n 1 107 GLN n 1 108 LEU n 1 109 LYS n 1 110 ASP n 1 111 GLY n 1 112 PRO n 1 113 TRP n 1 114 ASP n 1 115 VAL n 1 116 MET n 1 117 LEU n 1 118 LYS n 1 119 ARG n 1 120 SER n 1 121 LEU n 1 122 TRP n 1 123 CYS n 1 124 CYS n 1 125 ILE n 1 126 ASP n 1 127 LEU n 1 128 PHE n 1 129 SER n 1 130 CYS n 1 131 ILE n 1 132 LEU n 1 133 HIS n 1 134 LEU n 1 135 TRP n 1 136 LYS n 1 137 GLU n 1 138 ASN n 1 139 ILE n 1 140 SER n 1 141 GLU n 1 142 THR n 1 143 SER n 1 144 THR n 1 145 ASN n 1 146 SER n 1 147 LEU n 1 148 GLN n 1 149 LYS n 1 150 ARG n 1 151 ILE n 1 152 LYS n 1 153 TYR n 1 154 CYS n 1 155 LYS n 1 156 ILE n 1 157 TYR n 1 158 LEU n 1 159 SER n 1 160 LYS n 1 161 LEU n 1 162 ALA n 1 163 LYS n 1 164 GLY n 1 165 GLU n 1 166 ILE n 1 167 GLY n 2 1 ASN n 2 2 VAL n 2 3 PRO n 2 4 GLU n 2 5 ILE n 2 6 LYS n 2 7 ALA n 2 8 LYS n 2 9 GLU n 2 10 VAL n 2 11 ASN n 2 12 VAL n 2 13 ASP n 2 14 ASP n 2 15 GLU n 2 16 LYS n 2 17 GLU n 2 18 ASP n 2 19 LYS n 2 20 LEU n 2 21 ALA n 2 22 GLN n 2 23 ARG n 2 24 LEU n 2 25 ARG n 2 26 ALA n 2 27 LEU n 2 28 ARG n 2 29 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 167 yeast ? 'VTA1, YLR181C' ? S288c ? ? ? ? 'Saccharomyces cerevisiae S288c' 559292 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? vector pET28b ? ? ? ? ? 2 1 sample 'Biological sequence' 1 29 yeast ? 'DID2, CHM1, FTI1, VPS46, YKR035W-A' ? S288c ? ? ? ? 'Saccharomyces cerevisiae S288c' 559292 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? vector pET28b ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP VTA1_YEAST Q06263 ? 1 ;MASNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMN TLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSK LAKGEIG ; 1 2 UNP DID2_YEAST P69771 ? 2 NVPEIKAKEVNVDDEKEDKLAQRLRALRG 176 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5H7P A 1 ? 167 ? Q06263 1 ? 167 ? 1 167 2 2 5H7P B 1 ? 29 ? P69771 176 ? 204 ? 176 204 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 2 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 2 isotropic 4 1 1 '3D CBCA(CO)NH' 1 isotropic 5 1 1 '3D HNCO' 1 isotropic 6 1 1 '3D HNCA' 1 isotropic 7 1 1 '3D HNCACB' 1 isotropic 8 1 1 '3D HN(CO)CA' 1 isotropic 9 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 10 1 1 '3D 1H-15N NOESY' 1 isotropic 11 1 1 '3D HCCH-TOCSY' 1 isotropic 12 1 2 '3D HNCO' 1 isotropic 13 1 2 '3D HNCACB' 1 isotropic 14 1 2 '3D CBCA(CO)NH' 1 isotropic 15 1 2 '3D HCCH-TOCSY' 1 isotropic 16 1 1 '3D 13C-F1 edited NOESY' 1 isotropic 17 1 2 '3D 13C-F1 edited NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 175 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditon-1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;25 mM NA- sodium phosphate-1, 100 mM NA- sodium chloride-2, 5 mM [U-100% 2H] DTT-3, 10 % [U-100% 2H] D2O-4, 0.02 % NA- sodium azide-5, 90% H2O/10% D2O ; '90% H2O/10% D2O' 15N,13C solution 'double labeled vta1NTD with unlabeled Did2 peptide' 2 ;25 mM NA- sodium phosphate-1, 100 mM NA- sodium chloride-2, 5 mM [U-100% 2H] DTT-3, 10 % [U-100% 2H] D2O-4, 0.02 % NA- sodium azide-5, 90% H2O/10% D2O ; '90% H2O/10% D2O' 15N,13C,2H solution '15N,13C and 70% 2H labeled vta1NTD with unlabeled Did2 peptide' 3 ;25 mM NA- sodium phosphate-1, 100 mM NA- sodium chloride-2, 5 mM [U-100% 2H] DTT-3, 10 % [U-100% 2H] D2O-4, 0.02 % NA- sodium azide-5, 90% H2O/10% D2O ; '90% H2O/10% D2O' '15N, 13C' solution '15N,13C double labeled Did2 peptide with unlabeled Vta1NTD' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 800 'with cryo-probe' 2 'Unity Inova' ? Varian 600 'with cryo-probe' # _pdbx_nmr_refine.entry_id 5H7P _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # _pdbx_nmr_ensemble.entry_id 5H7P _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer 6 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5H7P _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' Sparky 'Sparky 3' ;T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco ; 2 refinement XPLOR-NIH ? ;C.D. Schwieters, J.J. Kuszewski, N. Tjandra and G.M. Clore, "The Xplor-NIH NMR Molecular Structure Determination Package," J. Magn. Res., 160, 66-74 (2003). ; # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5H7P _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5H7P _struct.title 'NMR structure of the Vta1NTD-Did2(176-204) complex' _struct.pdbx_model_details 'lowest energy, model6' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5H7P _struct_keywords.text ;Endosomal Sorting Complexes Required for Transport, Multivesicular Bodies, microtubule-interacting and transport (MIT) domain, MIT-interacting motif 1 (MIM1), Saccharomyces cerevisiae Proteins, PROTEIN TRANSPORT ; _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 MET A 1 ? GLY A 19 ? MET A 1 GLY A 19 1 ? 19 HELX_P HELX_P2 AA2 LEU A 20 ? SER A 37 ? LEU A 20 SER A 37 1 ? 18 HELX_P HELX_P3 AA3 SER A 42 ? GLU A 62 ? SER A 42 GLU A 62 1 ? 21 HELX_P HELX_P4 AA4 GLU A 66 ? GLU A 70 ? GLU A 66 GLU A 70 5 ? 5 HELX_P HELX_P5 AA5 ASP A 71 ? ASP A 85 ? ASP A 71 ASP A 85 1 ? 15 HELX_P HELX_P6 AA6 ASP A 85 ? GLY A 111 ? ASP A 85 GLY A 111 1 ? 27 HELX_P HELX_P7 AA7 ASP A 114 ? LYS A 136 ? ASP A 114 LYS A 136 1 ? 23 HELX_P HELX_P8 AA8 GLU A 137 ? ILE A 139 ? GLU A 137 ILE A 139 5 ? 3 HELX_P HELX_P9 AA9 SER A 140 ? GLY A 164 ? SER A 140 GLY A 164 1 ? 25 HELX_P HELX_P10 AB1 VAL B 10 ? GLY B 29 ? VAL B 185 GLY B 204 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 5H7P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O Q S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 HIS 77 77 77 HIS HIS A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 TRP 113 113 113 TRP TRP A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 MET 116 116 116 MET MET A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 TRP 122 122 122 TRP TRP A . n A 1 123 CYS 123 123 123 CYS CYS A . n A 1 124 CYS 124 124 124 CYS CYS A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 TRP 135 135 135 TRP TRP A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 GLN 148 148 148 GLN GLN A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 TYR 153 153 153 TYR TYR A . n A 1 154 CYS 154 154 154 CYS CYS A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 GLY 167 167 167 GLY GLY A . n B 2 1 ASN 1 176 176 ASN ASN B . n B 2 2 VAL 2 177 177 VAL VAL B . n B 2 3 PRO 3 178 178 PRO PRO B . n B 2 4 GLU 4 179 179 GLU GLU B . n B 2 5 ILE 5 180 180 ILE ILE B . n B 2 6 LYS 6 181 181 LYS LYS B . n B 2 7 ALA 7 182 182 ALA ALA B . n B 2 8 LYS 8 183 183 LYS LYS B . n B 2 9 GLU 9 184 184 GLU GLU B . n B 2 10 VAL 10 185 185 VAL VAL B . n B 2 11 ASN 11 186 186 ASN ASN B . n B 2 12 VAL 12 187 187 VAL VAL B . n B 2 13 ASP 13 188 188 ASP ASP B . n B 2 14 ASP 14 189 189 ASP ASP B . n B 2 15 GLU 15 190 190 GLU GLU B . n B 2 16 LYS 16 191 191 LYS LYS B . n B 2 17 GLU 17 192 192 GLU GLU B . n B 2 18 ASP 18 193 193 ASP ASP B . n B 2 19 LYS 19 194 194 LYS LYS B . n B 2 20 LEU 20 195 195 LEU LEU B . n B 2 21 ALA 21 196 196 ALA ALA B . n B 2 22 GLN 22 197 197 GLN GLN B . n B 2 23 ARG 23 198 198 ARG ARG B . n B 2 24 LEU 24 199 199 LEU LEU B . n B 2 25 ARG 25 200 200 ARG ARG B . n B 2 26 ALA 26 201 201 ALA ALA B . n B 2 27 LEU 27 202 202 LEU LEU B . n B 2 28 ARG 28 203 203 ARG ARG B . n B 2 29 GLY 29 204 204 GLY GLY B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-21 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' entity 3 2 'Structure model' pdbx_database_status 4 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_entity.pdbx_number_of_molecules' 4 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sodium phosphate-1' 25 ? mM NA- 1 'sodium chloride-2' 100 ? mM NA- 1 DTT-3 5 ? mM '[U-100% 2H]' 1 D2O-4 10 ? % '[U-100% 2H]' 1 'sodium azide-5' 0.02 ? % NA- 2 'sodium phosphate-1' 25 ? mM NA- 2 'sodium chloride-2' 100 ? mM NA- 2 DTT-3 5 ? mM '[U-100% 2H]' 2 D2O-4 10 ? % '[U-100% 2H]' 2 'sodium azide-5' 0.02 ? % NA- 3 'sodium phosphate-1' 25 ? mM NA- 3 'sodium chloride-2' 100 ? mM NA- 3 DTT-3 5 ? mM '[U-100% 2H]' 3 D2O-4 10 ? % '[U-100% 2H]' 3 'sodium azide-5' 0.02 ? % NA- # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A MET 93 ? ? H A THR 97 ? ? 1.59 2 3 HZ1 A LYS 104 ? ? HG A SER 120 ? ? 1.28 3 5 HG A SER 140 ? ? H A SER 143 ? ? 1.35 4 7 O A LYS 90 ? ? H A LEU 94 ? ? 1.55 5 8 O A LYS 90 ? ? H A LEU 94 ? ? 1.58 6 8 O A THR 144 ? ? H A GLN 148 ? ? 1.59 7 11 HG A SER 140 ? ? H A SER 143 ? ? 1.27 8 11 O A LYS 90 ? ? H A LEU 94 ? ? 1.51 9 12 O A MET 93 ? ? H A THR 97 ? ? 1.59 10 14 O A LYS 90 ? ? H A LEU 94 ? ? 1.53 11 15 H2 B ASN 176 ? ? H B VAL 177 ? ? 1.35 12 15 O A LYS 90 ? ? H A LEU 94 ? ? 1.57 13 16 H3 A MET 1 ? ? H A ALA 2 ? ? 1.31 14 16 O A LYS 90 ? ? H A LEU 94 ? ? 1.56 15 18 HZ2 A LYS 160 ? ? H A GLY 167 ? ? 1.23 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 20 ? ? -95.55 54.93 2 1 SER A 42 ? ? -58.11 170.02 3 1 ALA A 69 ? ? -39.26 -37.33 4 2 LEU A 20 ? ? -97.66 54.67 5 3 LEU A 20 ? ? -95.85 44.95 6 3 SER A 42 ? ? -58.24 171.23 7 3 ALA A 69 ? ? -37.15 -35.00 8 3 GLU B 184 ? ? -142.06 -36.32 9 4 LEU A 20 ? ? -95.44 54.62 10 4 SER A 42 ? ? -56.82 171.85 11 4 GLU A 70 ? ? 59.00 115.18 12 5 LEU A 20 ? ? -95.58 50.20 13 5 SER A 42 ? ? -57.51 171.35 14 6 LEU A 20 ? ? -95.72 48.70 15 6 SER A 42 ? ? -57.00 170.46 16 6 ALA A 69 ? ? -40.00 -36.08 17 7 LEU A 20 ? ? -95.86 33.62 18 7 SER A 42 ? ? -58.07 171.32 19 7 ALA A 69 ? ? 11.06 -76.21 20 8 LEU A 20 ? ? -95.68 54.25 21 9 LEU A 20 ? ? -95.36 54.70 22 10 LEU A 20 ? ? -95.75 47.57 23 10 SER A 42 ? ? -57.81 171.42 24 10 GLU B 179 ? ? 41.98 94.71 25 11 LEU A 20 ? ? -95.72 54.62 26 11 VAL B 185 ? ? -150.66 -41.71 27 12 LEU A 20 ? ? -95.70 54.23 28 12 ASP A 71 ? ? -43.12 -15.22 29 13 LEU A 20 ? ? -95.95 49.85 30 14 LEU A 20 ? ? -95.83 54.66 31 14 ALA B 182 ? ? 55.61 111.18 32 15 LEU A 20 ? ? -95.29 54.11 33 15 SER A 42 ? ? -57.15 171.62 34 16 LEU A 20 ? ? -95.88 47.93 35 16 SER A 42 ? ? -57.77 171.30 36 16 ALA A 69 ? ? -39.22 -37.40 37 17 LEU A 20 ? ? -95.57 36.63 38 17 SER A 42 ? ? -57.35 170.99 39 18 LEU A 20 ? ? -95.75 47.74 40 18 ALA B 182 ? ? 62.12 -79.45 41 19 LEU A 20 ? ? -95.64 50.79 42 19 SER A 42 ? ? -58.32 171.26 43 19 ALA A 69 ? ? -39.55 -37.48 44 20 LEU A 20 ? ? -95.66 54.44 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Basic Research Program of China' China 2011CB966300 1 'Science and Technology Commission of Shanghai Municipality' China 15ZR1449300 2 #