data_5HV8 # _entry.id 5HV8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5HV8 WWPDB D_1000217755 BMRB 30006 # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 30006 _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5HV8 _pdbx_database_status.recvd_initial_deposition_date 2016-01-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vance, S.' 1 ? 'Tkachenko, O.' 2 ? 'Thomas, B.' 3 ? 'Bassuni, M.' 4 ? 'Hong, H.' 5 ? 'Nietlispach, D.' 6 ? 'Broadhurst, R.W.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochem.J. _citation.journal_id_ASTM BIJOAK _citation.journal_id_CSD 0043 _citation.journal_id_ISSN 1470-8728 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 473 _citation.language ? _citation.page_first 1097 _citation.page_last 1110 _citation.title 'Sticky swinging arm dynamics: studies of an acyl carrier protein domain from the mycolactone polyketide synthase.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1042/BCJ20160041 _citation.pdbx_database_id_PubMed 26920023 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vance, S.' 1 ? primary 'Tkachenko, O.' 2 ? primary 'Thomas, B.' 3 ? primary 'Bassuni, M.' 4 ? primary 'Hong, H.' 5 ? primary 'Nietlispach, D.' 6 ? primary 'Broadhurst, W.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Type I modular polyketide synthase' 10237.473 1 ? ? ? ? 2 non-polymer man 'S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] octanethioate' 484.544 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMRLNGLSPQQQQQTLATLVAAATATVLGHHTPESISPATAFKDLGIDSLTALELRNTLTHNTGLDLPPTLIFDHPTP HALTQHLHTRLTQSH ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMRLNGLSPQQQQQTLATLVAAATATVLGHHTPESISPATAFKDLGIDSLTALELRNTLTHNTGLDLPPTLIFDHPTP HALTQHLHTRLTQSH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ARG n 1 6 LEU n 1 7 ASN n 1 8 GLY n 1 9 LEU n 1 10 SER n 1 11 PRO n 1 12 GLN n 1 13 GLN n 1 14 GLN n 1 15 GLN n 1 16 GLN n 1 17 THR n 1 18 LEU n 1 19 ALA n 1 20 THR n 1 21 LEU n 1 22 VAL n 1 23 ALA n 1 24 ALA n 1 25 ALA n 1 26 THR n 1 27 ALA n 1 28 THR n 1 29 VAL n 1 30 LEU n 1 31 GLY n 1 32 HIS n 1 33 HIS n 1 34 THR n 1 35 PRO n 1 36 GLU n 1 37 SER n 1 38 ILE n 1 39 SER n 1 40 PRO n 1 41 ALA n 1 42 THR n 1 43 ALA n 1 44 PHE n 1 45 LYS n 1 46 ASP n 1 47 LEU n 1 48 GLY n 1 49 ILE n 1 50 ASP n 1 51 SER n 1 52 LEU n 1 53 THR n 1 54 ALA n 1 55 LEU n 1 56 GLU n 1 57 LEU n 1 58 ARG n 1 59 ASN n 1 60 THR n 1 61 LEU n 1 62 THR n 1 63 HIS n 1 64 ASN n 1 65 THR n 1 66 GLY n 1 67 LEU n 1 68 ASP n 1 69 LEU n 1 70 PRO n 1 71 PRO n 1 72 THR n 1 73 LEU n 1 74 ILE n 1 75 PHE n 1 76 ASP n 1 77 HIS n 1 78 PRO n 1 79 THR n 1 80 PRO n 1 81 HIS n 1 82 ALA n 1 83 LEU n 1 84 THR n 1 85 GLN n 1 86 HIS n 1 87 LEU n 1 88 HIS n 1 89 THR n 1 90 ARG n 1 91 LEU n 1 92 THR n 1 93 GLN n 1 94 SER n 1 95 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 95 ? ? 'mlsA2, MUP039c' ? ? ? ? ? ? 'Mycobacterium ulcerans' 1809 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? Tuner ? ? ? ? ? ? Plasmid pET28 ? ? ? ? ? 2 1 sample ? ? ? ? ? mlsA2 ? ? ? ? ? ? 'Mycobacterium ulcerans' 1809 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'Tuner (DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? pET28 ? ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6MZA5_MYCUA _struct_ref.pdbx_db_accession Q6MZA5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RLNGLSPQQQQQTLATLVAAATATVLGHHTPESISPATAFKDLGIDSLTALELRNTLTHNTGLDLPPTLIFDHPTPHALT QHLHTRLTQSH ; _struct_ref.pdbx_align_begin 2050 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5HV8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 95 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6MZA5 _struct_ref_seq.db_align_beg 2050 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2140 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2050 _struct_ref_seq.pdbx_auth_seq_align_end 2140 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5HV8 GLY A 1 ? UNP Q6MZA5 ? ? 'expression tag' 2046 1 1 5HV8 SER A 2 ? UNP Q6MZA5 ? ? 'expression tag' 2047 2 1 5HV8 HIS A 3 ? UNP Q6MZA5 ? ? 'expression tag' 2048 3 1 5HV8 MET A 4 ? UNP Q6MZA5 ? ? 'expression tag' 2049 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 66S non-polymer . 'S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] octanethioate' ? 'C19 H37 N2 O8 P S' 484.544 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '3D 15N-HSQC-TOCSY' 1 isotropic 3 1 1 '3D 15N-HSQC-NOESY' 1 isotropic 4 1 1 '3D HNCA' 1 isotropic 5 1 1 '3D HN(CO)CA' 1 isotropic 13 1 1 '3D HNCACB' 1 isotropic 12 1 1 '3D CBCA(CO)NH' 1 isotropic 11 1 1 '3D HCCH-TOCSY' 1 isotropic 10 1 1 '3D 13C-HSQC-NOESY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 150 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err .05 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err .2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '150 mM sodium phosphate, 0.1 mM 3,3,3-trimethylsilylpropionate, sodium salt, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 15N13C_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ;The sample was prepared at a concentrations of 800 micromolar in phosphate buffer supplemented with 10 % D2O and 0.0025 % 3,3,3-trimethylsilylpropionate (Sigma) in 5 mm Ultra-Imperial grade NMR tubes (Wilmad) to a final volume of 600 microlitres. ; # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 DRX ? Bruker 500 ? 2 DRX ? Bruker 800 ? # _pdbx_nmr_refine.entry_id 5HV8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Structures were calculated with no hydrogen bond restraints, and 167 dihedral angle restraints determined using DANGLE' _pdbx_nmr_refine.software_ordinal 3 # _pdbx_nmr_ensemble.entry_id 5HV8 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5HV8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' ? CCPN 2 'peak picking' 'CcpNmr Analysis' ? CCPN 3 'structure calculation' ARIA 2.3 ;Linge, O'Donoghue and Nilges ; # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5HV8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5HV8 _struct.title 'Solution structure of an octanoyl- loaded acyl carrier protein domain from module MLSA2 of the mycolactone polyketide synthase.' _struct.pdbx_descriptor 'Type I modular polyketide synthase' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5HV8 _struct_keywords.text 'acyl carrier protein mycolactone, Transferase' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 3 ? ASN A 7 ? HIS A 2048 ASN A 2052 5 ? 5 HELX_P HELX_P2 AA2 SER A 10 ? LEU A 30 ? SER A 2055 LEU A 2075 1 ? 21 HELX_P HELX_P3 AA3 THR A 34 ? ILE A 38 ? THR A 2079 ILE A 2083 5 ? 5 HELX_P HELX_P4 AA4 ALA A 43 ? GLY A 48 ? ALA A 2088 GLY A 2093 1 ? 6 HELX_P HELX_P5 AA5 ASP A 50 ? ASN A 64 ? ASP A 2095 ASN A 2109 1 ? 15 HELX_P HELX_P6 AA6 THR A 72 ? HIS A 77 ? THR A 2117 HIS A 2122 1 ? 6 HELX_P HELX_P7 AA7 THR A 79 ? GLN A 93 ? THR A 2124 GLN A 2138 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id 66S _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id P24 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 2096 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 66S _struct_conn.ptnr2_auth_seq_id 2201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.575 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 66S _struct_site.pdbx_auth_seq_id 2201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue 66S A 2201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ILE A 49 ? ILE A 2094 . ? 1_555 ? 2 AC1 5 ASP A 50 ? ASP A 2095 . ? 1_555 ? 3 AC1 5 SER A 51 ? SER A 2096 . ? 1_555 ? 4 AC1 5 LEU A 52 ? LEU A 2097 . ? 1_555 ? 5 AC1 5 PHE A 75 ? PHE A 2120 . ? 1_555 ? # _atom_sites.entry_id 5HV8 _atom_sites.fract_transf_matrix[1][1] 0.001000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.001000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.001000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2046 2046 GLY GLY A . n A 1 2 SER 2 2047 2047 SER SER A . n A 1 3 HIS 3 2048 2048 HIS HIS A . n A 1 4 MET 4 2049 2049 MET MET A . n A 1 5 ARG 5 2050 2050 ARG ARG A . n A 1 6 LEU 6 2051 2051 LEU LEU A . n A 1 7 ASN 7 2052 2052 ASN ASN A . n A 1 8 GLY 8 2053 2053 GLY GLY A . n A 1 9 LEU 9 2054 2054 LEU LEU A . n A 1 10 SER 10 2055 2055 SER SER A . n A 1 11 PRO 11 2056 2056 PRO PRO A . n A 1 12 GLN 12 2057 2057 GLN GLN A . n A 1 13 GLN 13 2058 2058 GLN GLN A . n A 1 14 GLN 14 2059 2059 GLN GLN A . n A 1 15 GLN 15 2060 2060 GLN GLN A . n A 1 16 GLN 16 2061 2061 GLN GLN A . n A 1 17 THR 17 2062 2062 THR THR A . n A 1 18 LEU 18 2063 2063 LEU LEU A . n A 1 19 ALA 19 2064 2064 ALA ALA A . n A 1 20 THR 20 2065 2065 THR THR A . n A 1 21 LEU 21 2066 2066 LEU LEU A . n A 1 22 VAL 22 2067 2067 VAL VAL A . n A 1 23 ALA 23 2068 2068 ALA ALA A . n A 1 24 ALA 24 2069 2069 ALA ALA A . n A 1 25 ALA 25 2070 2070 ALA ALA A . n A 1 26 THR 26 2071 2071 THR THR A . n A 1 27 ALA 27 2072 2072 ALA ALA A . n A 1 28 THR 28 2073 2073 THR THR A . n A 1 29 VAL 29 2074 2074 VAL VAL A . n A 1 30 LEU 30 2075 2075 LEU LEU A . n A 1 31 GLY 31 2076 2076 GLY GLY A . n A 1 32 HIS 32 2077 2077 HIS HIS A . n A 1 33 HIS 33 2078 2078 HIS HIS A . n A 1 34 THR 34 2079 2079 THR THR A . n A 1 35 PRO 35 2080 2080 PRO PRO A . n A 1 36 GLU 36 2081 2081 GLU GLU A . n A 1 37 SER 37 2082 2082 SER SER A . n A 1 38 ILE 38 2083 2083 ILE ILE A . n A 1 39 SER 39 2084 2084 SER SER A . n A 1 40 PRO 40 2085 2085 PRO PRO A . n A 1 41 ALA 41 2086 2086 ALA ALA A . n A 1 42 THR 42 2087 2087 THR THR A . n A 1 43 ALA 43 2088 2088 ALA ALA A . n A 1 44 PHE 44 2089 2089 PHE PHE A . n A 1 45 LYS 45 2090 2090 LYS LYS A . n A 1 46 ASP 46 2091 2091 ASP ASP A . n A 1 47 LEU 47 2092 2092 LEU LEU A . n A 1 48 GLY 48 2093 2093 GLY GLY A . n A 1 49 ILE 49 2094 2094 ILE ILE A . n A 1 50 ASP 50 2095 2095 ASP ASP A . n A 1 51 SER 51 2096 2096 SER SXO A . n A 1 52 LEU 52 2097 2097 LEU LEU A . n A 1 53 THR 53 2098 2098 THR THR A . n A 1 54 ALA 54 2099 2099 ALA ALA A . n A 1 55 LEU 55 2100 2100 LEU LEU A . n A 1 56 GLU 56 2101 2101 GLU GLU A . n A 1 57 LEU 57 2102 2102 LEU LEU A . n A 1 58 ARG 58 2103 2103 ARG ARG A . n A 1 59 ASN 59 2104 2104 ASN ASN A . n A 1 60 THR 60 2105 2105 THR THR A . n A 1 61 LEU 61 2106 2106 LEU LEU A . n A 1 62 THR 62 2107 2107 THR THR A . n A 1 63 HIS 63 2108 2108 HIS HIS A . n A 1 64 ASN 64 2109 2109 ASN ASN A . n A 1 65 THR 65 2110 2110 THR THR A . n A 1 66 GLY 66 2111 2111 GLY GLY A . n A 1 67 LEU 67 2112 2112 LEU LEU A . n A 1 68 ASP 68 2113 2113 ASP ASP A . n A 1 69 LEU 69 2114 2114 LEU LEU A . n A 1 70 PRO 70 2115 2115 PRO PRO A . n A 1 71 PRO 71 2116 2116 PRO PRO A . n A 1 72 THR 72 2117 2117 THR THR A . n A 1 73 LEU 73 2118 2118 LEU LEU A . n A 1 74 ILE 74 2119 2119 ILE ILE A . n A 1 75 PHE 75 2120 2120 PHE PHE A . n A 1 76 ASP 76 2121 2121 ASP ASP A . n A 1 77 HIS 77 2122 2122 HIS HIS A . n A 1 78 PRO 78 2123 2123 PRO PRO A . n A 1 79 THR 79 2124 2124 THR THR A . n A 1 80 PRO 80 2125 2125 PRO PRO A . n A 1 81 HIS 81 2126 2126 HIS HIS A . n A 1 82 ALA 82 2127 2127 ALA ALA A . n A 1 83 LEU 83 2128 2128 LEU LEU A . n A 1 84 THR 84 2129 2129 THR THR A . n A 1 85 GLN 85 2130 2130 GLN GLN A . n A 1 86 HIS 86 2131 2131 HIS HIS A . n A 1 87 LEU 87 2132 2132 LEU LEU A . n A 1 88 HIS 88 2133 2133 HIS HIS A . n A 1 89 THR 89 2134 2134 THR THR A . n A 1 90 ARG 90 2135 2135 ARG ARG A . n A 1 91 LEU 91 2136 2136 LEU LEU A . n A 1 92 THR 92 2137 2137 THR THR A . n A 1 93 GLN 93 2138 2138 GLN GLN A . n A 1 94 SER 94 2139 2139 SER SER A . n A 1 95 HIS 95 2140 2140 HIS HIS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 66S _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2201 _pdbx_nonpoly_scheme.auth_seq_num 2096 _pdbx_nonpoly_scheme.pdb_mon_id 66S _pdbx_nonpoly_scheme.auth_mon_id SXO _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5780 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-09 2 'Structure model' 1 1 2016-03-30 3 'Structure model' 1 2 2016-04-20 4 'Structure model' 1 3 2018-01-17 5 'Structure model' 1 4 2019-05-08 6 'Structure model' 1 5 2019-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' struct 2 5 'Structure model' pdbx_nmr_software 3 6 'Structure model' pdbx_nmr_exptl_sample_conditions # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_struct.title' 2 5 'Structure model' '_pdbx_nmr_software.name' 3 6 'Structure model' '_pdbx_nmr_exptl_sample_conditions.temperature_units' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'sodium phosphate' 150 ? mM 'natural abundance' 1 '3,3,3-trimethylsilylpropionate, sodium salt' 0.1 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 C A ASP 2095 ? ? H A SER 2096 ? ? 0.35 2 2 O A ASP 2095 ? ? H A SER 2096 ? ? 1.43 3 4 C A ASP 2095 ? ? H A SER 2096 ? ? 0.46 4 4 O A ASP 2095 ? ? H A SER 2096 ? ? 1.47 5 5 C A ASP 2095 ? ? H A SER 2096 ? ? 0.36 6 5 O A ASP 2095 ? ? H A SER 2096 ? ? 1.43 7 6 C A ASP 2095 ? ? H A SER 2096 ? ? 0.47 8 6 O A ASP 2095 ? ? H A SER 2096 ? ? 1.46 9 7 C A ASP 2095 ? ? H A SER 2096 ? ? 0.38 10 7 O A ASP 2095 ? ? H A SER 2096 ? ? 1.43 11 9 C A ASP 2095 ? ? H A SER 2096 ? ? 0.36 12 9 O A ASP 2095 ? ? H A SER 2096 ? ? 1.43 13 11 C A ASP 2095 ? ? H A SER 2096 ? ? 0.46 14 11 O A ASP 2095 ? ? H A SER 2096 ? ? 1.48 15 12 C A ASP 2095 ? ? H A SER 2096 ? ? 0.35 16 12 O A ASP 2095 ? ? H A SER 2096 ? ? 1.39 17 12 O A LEU 2066 ? ? H A ALA 2070 ? ? 1.60 18 13 C A ASP 2095 ? ? H A SER 2096 ? ? 0.47 19 13 O A ASP 2095 ? ? H A SER 2096 ? ? 1.47 20 14 C A ASP 2095 ? ? H A SER 2096 ? ? 0.38 21 14 O A ASP 2095 ? ? H A SER 2096 ? ? 1.42 22 17 C A ASP 2095 ? ? H A SER 2096 ? ? 0.36 23 17 O A ASP 2095 ? ? H A SER 2096 ? ? 1.41 24 19 C A ASP 2095 ? ? H A SER 2096 ? ? 0.34 25 19 O A ASP 2095 ? ? H A SER 2096 ? ? 1.42 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2047 ? ? 52.62 91.53 2 1 HIS A 2048 ? ? -74.04 22.54 3 1 HIS A 2078 ? ? 69.21 135.48 4 1 ASP A 2095 ? ? -107.00 -162.06 5 1 LEU A 2112 ? ? -109.88 -169.78 6 2 HIS A 2077 ? ? -172.35 -8.04 7 2 LEU A 2112 ? ? -66.67 -170.29 8 2 THR A 2124 ? ? -177.75 147.29 9 3 HIS A 2077 ? ? -173.95 -3.65 10 3 ASP A 2095 ? ? -115.15 -169.49 11 3 THR A 2124 ? ? -177.62 146.39 12 4 LEU A 2051 ? ? -77.06 27.68 13 4 ASN A 2052 ? ? -39.86 150.02 14 4 HIS A 2077 ? ? -173.38 3.37 15 4 ASP A 2095 ? ? -103.42 -169.67 16 4 THR A 2124 ? ? -177.95 142.22 17 5 SER A 2047 ? ? -116.29 55.39 18 5 HIS A 2048 ? ? -74.32 23.60 19 5 MET A 2049 ? ? -40.09 -74.35 20 5 HIS A 2077 ? ? -169.32 -3.03 21 5 ASP A 2095 ? ? -105.89 -164.18 22 5 THR A 2124 ? ? -177.21 144.88 23 5 SER A 2139 ? ? 54.34 83.77 24 6 MET A 2049 ? ? -106.25 -84.43 25 6 ARG A 2050 ? ? -121.83 -60.59 26 6 ASN A 2052 ? ? -38.22 151.14 27 6 HIS A 2077 ? ? -155.00 55.41 28 6 THR A 2124 ? ? -177.71 143.97 29 6 SER A 2139 ? ? 61.69 -157.95 30 7 ILE A 2083 ? ? -67.93 97.48 31 7 ASP A 2095 ? ? -103.91 -166.84 32 7 LEU A 2118 ? ? -40.30 -70.41 33 7 SER A 2139 ? ? 65.12 -160.92 34 8 MET A 2049 ? ? -76.30 22.67 35 8 HIS A 2077 ? ? -169.51 -4.90 36 8 THR A 2124 ? ? -177.63 142.58 37 9 HIS A 2048 ? ? -70.98 23.17 38 9 LEU A 2051 ? ? -138.74 -64.61 39 9 ASP A 2095 ? ? -112.31 -164.20 40 9 THR A 2124 ? ? -177.02 146.27 41 9 SER A 2139 ? ? 53.46 -160.88 42 10 MET A 2049 ? ? -68.75 -71.61 43 10 ARG A 2050 ? ? -95.93 -65.47 44 10 LEU A 2051 ? ? -136.92 -57.05 45 10 THR A 2124 ? ? -178.17 142.63 46 10 SER A 2139 ? ? 68.70 -174.30 47 11 HIS A 2048 ? ? -79.52 23.69 48 11 HIS A 2078 ? ? 37.89 79.62 49 11 ASP A 2095 ? ? -110.99 -165.87 50 11 THR A 2124 ? ? -177.70 138.39 51 12 LEU A 2051 ? ? -124.77 -50.59 52 12 HIS A 2077 ? ? -172.90 5.32 53 12 ASP A 2095 ? ? -113.36 -161.62 54 12 THR A 2124 ? ? -178.95 144.09 55 12 SER A 2139 ? ? 67.95 177.87 56 13 MET A 2049 ? ? -65.97 20.03 57 13 HIS A 2077 ? ? -172.95 0.18 58 13 LEU A 2118 ? ? -34.57 -70.09 59 13 THR A 2124 ? ? -177.75 146.87 60 13 SER A 2139 ? ? 60.79 176.28 61 14 HIS A 2078 ? ? 54.09 -158.38 62 14 THR A 2079 ? ? 68.49 101.32 63 14 ASP A 2095 ? ? -103.20 -165.75 64 14 THR A 2124 ? ? -177.13 137.60 65 15 HIS A 2077 ? ? -169.52 -3.28 66 15 ASP A 2095 ? ? -110.18 -169.32 67 15 LEU A 2112 ? ? -78.78 -167.94 68 15 PRO A 2116 ? ? -59.06 -9.38 69 15 THR A 2124 ? ? -177.43 138.31 70 16 HIS A 2048 ? ? -73.46 25.03 71 16 HIS A 2077 ? ? -175.28 -37.65 72 16 HIS A 2078 ? ? 45.41 82.42 73 16 ASP A 2095 ? ? -116.89 -165.27 74 16 THR A 2124 ? ? -177.26 148.31 75 17 HIS A 2078 ? ? 41.75 79.33 76 17 ASP A 2095 ? ? -104.57 -163.26 77 17 LEU A 2118 ? ? -36.36 -70.06 78 17 THR A 2124 ? ? -177.15 144.68 79 18 SER A 2047 ? ? 58.80 73.08 80 18 HIS A 2048 ? ? -68.25 13.22 81 18 HIS A 2077 ? ? -160.57 56.37 82 18 ASP A 2095 ? ? -105.08 -164.04 83 18 THR A 2124 ? ? -177.62 143.05 84 19 HIS A 2077 ? ? -175.29 -39.55 85 19 HIS A 2078 ? ? 44.83 84.43 86 19 ASP A 2095 ? ? -112.73 -163.85 87 19 THR A 2124 ? ? -177.53 143.96 88 20 SER A 2047 ? ? 59.93 -97.99 89 20 HIS A 2077 ? ? -173.63 -1.76 90 20 THR A 2124 ? ? -178.55 140.68 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 9 ARG A 2050 ? ? LEU A 2051 ? ? 144.17 2 10 ARG A 2050 ? ? LEU A 2051 ? ? 147.23 3 10 ASN A 2052 ? ? GLY A 2053 ? ? 149.94 # _pdbx_audit_support.funding_organization 'Wellcome Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 094252/Z/10/Z _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] octanethioate' _pdbx_entity_nonpoly.comp_id 66S #