HEADER VIRAL PROTEIN/DNA 09-MAR-16 5IP3 TITLE TOMATO SPOTTED WILT TOSPOVIRUS NUCLEOCAPSID PROTEIN-SSDNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: B, C, A; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*TP*TP*TP*TP*T)-3'); COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*T)-3'); COMPND 12 CHAIN: E; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOMATO SPOTTED WILT VIRUS; SOURCE 3 ORGANISM_COMMON: TSWV; SOURCE 4 ORGANISM_TAXID: 11613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 (DE3) PRARE2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS VIRAL PROTEIN, NUCLEOCAPSID PROTEIN, BUNYAVIRUS, TOSPOVIRUS, VIRAL KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.KOMODA,M.NARITA,K.YAMASHITA,I.TANAKA,M.YAO REVDAT 4 08-NOV-23 5IP3 1 REMARK REVDAT 3 21-MAR-18 5IP3 1 JRNL REVDAT 2 14-JUN-17 5IP3 1 REMARK ATOM ANISOU REVDAT 1 22-MAR-17 5IP3 0 JRNL AUTH K.KOMODA,M.NARITA,K.YAMASHITA,I.TANAKA,M.YAO JRNL TITL ASYMMETRIC TRIMERIC RING STRUCTURE OF THE NUCLEOCAPSID JRNL TITL 2 PROTEIN OF TOSPOVIRUS. JRNL REF J. VIROL. V. 91 2017 JRNL REFN ESSN 1098-5514 JRNL PMID 28768868 JRNL DOI 10.1128/JVI.01002-17 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1426 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.1340 - 3.0000 0.98 1612 145 0.3583 0.3994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6092 REMARK 3 ANGLE : 0.938 8243 REMARK 3 CHIRALITY : 0.039 958 REMARK 3 PLANARITY : 0.004 978 REMARK 3 DIHEDRAL : 16.525 2349 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 20.4185 50.3181 55.3505 REMARK 3 T TENSOR REMARK 3 T11: 0.9052 T22: 0.6352 REMARK 3 T33: 0.7953 T12: 0.0697 REMARK 3 T13: 0.0507 T23: 0.1290 REMARK 3 L TENSOR REMARK 3 L11: 4.1932 L22: 0.6730 REMARK 3 L33: 3.7167 L12: 0.5784 REMARK 3 L13: -0.0506 L23: 0.2289 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.0822 S13: -0.0710 REMARK 3 S21: 0.0111 S22: -0.0006 S23: 0.1224 REMARK 3 S31: 0.2704 S32: 0.2210 S33: 0.0606 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 17.7090 48.9004 25.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.7548 T22: 0.7952 REMARK 3 T33: 0.9194 T12: -0.0017 REMARK 3 T13: 0.0434 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.0582 L22: 0.6857 REMARK 3 L33: 4.9817 L12: 0.8019 REMARK 3 L13: 0.7787 L23: 0.9633 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.2169 S13: -0.0530 REMARK 3 S21: -0.1222 S22: 0.1298 S23: 0.0319 REMARK 3 S31: 0.3322 S32: 0.6643 S33: -0.1834 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -5.7517 61.7460 40.3072 REMARK 3 T TENSOR REMARK 3 T11: 0.9760 T22: 1.1216 REMARK 3 T33: 1.3573 T12: 0.0154 REMARK 3 T13: -0.0812 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 2.8123 L22: 0.2150 REMARK 3 L33: 4.0504 L12: 0.1444 REMARK 3 L13: 1.3155 L23: -0.3706 REMARK 3 S TENSOR REMARK 3 S11: -0.4237 S12: 0.0806 S13: 0.8603 REMARK 3 S21: 0.1226 S22: 0.0568 S23: 0.2979 REMARK 3 S31: -0.2862 S32: -0.9147 S33: 0.3667 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 15.4556 46.5548 33.5355 REMARK 3 T TENSOR REMARK 3 T11: 1.6629 T22: 1.2693 REMARK 3 T33: 1.1686 T12: -0.1736 REMARK 3 T13: -0.1296 T23: 0.2083 REMARK 3 L TENSOR REMARK 3 L11: 1.1642 L22: 0.4238 REMARK 3 L33: 0.7685 L12: -0.1904 REMARK 3 L13: 0.9429 L23: -0.2162 REMARK 3 S TENSOR REMARK 3 S11: -0.8526 S12: -0.9510 S13: 0.2216 REMARK 3 S21: 0.3655 S22: 0.4311 S23: 0.3462 REMARK 3 S31: -0.3085 S32: 0.1387 S33: 0.2134 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 12.3303 50.2754 50.4219 REMARK 3 T TENSOR REMARK 3 T11: 1.7817 T22: 0.7055 REMARK 3 T33: 1.1967 T12: 0.0137 REMARK 3 T13: -0.1464 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 3.3831 L22: 6.1772 REMARK 3 L33: 7.1474 L12: 0.6204 REMARK 3 L13: 0.5804 L23: 2.6445 REMARK 3 S TENSOR REMARK 3 S11: -1.2254 S12: 0.8147 S13: -0.1077 REMARK 3 S21: -1.2844 S22: 1.0912 S23: -0.6921 REMARK 3 S31: -1.0342 S32: 0.3549 S33: 0.0211 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -4.1803 53.1598 36.8805 REMARK 3 T TENSOR REMARK 3 T11: 1.2669 T22: 1.4402 REMARK 3 T33: 1.4856 T12: -0.2182 REMARK 3 T13: 0.0578 T23: -0.2854 REMARK 3 L TENSOR REMARK 3 L11: 2.6932 L22: 3.1894 REMARK 3 L33: 0.6567 L12: 1.3092 REMARK 3 L13: 0.1472 L23: 1.3003 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.7071 S13: 0.2464 REMARK 3 S21: 0.5954 S22: 0.9246 S23: -0.7714 REMARK 3 S31: 0.4533 S32: 0.5647 S33: -0.7048 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 2:23 OR RESID 34:223) REMARK 3 SELECTION : CHAIN B AND (RESID 2:23 OR RESID 34:223) REMARK 3 ATOM PAIRS NUMBER : 3028 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 2:23 OR RESID 34:223) REMARK 3 SELECTION : CHAIN C AND (RESID 2:23 OR RESID 34:223) REMARK 3 ATOM PAIRS NUMBER : 3028 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14540 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.580 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.92800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4YBW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.5, 25% (W/V) PEG1000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.22850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -20 REMARK 465 ASN B -19 REMARK 465 HIS B -18 REMARK 465 LYS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 25 REMARK 465 ASN B 26 REMARK 465 GLN B 27 REMARK 465 LYS B 253 REMARK 465 LEU B 254 REMARK 465 ALA B 255 REMARK 465 GLU B 256 REMARK 465 LEU B 257 REMARK 465 ALA B 258 REMARK 465 MET C -20 REMARK 465 ASN C -19 REMARK 465 HIS C -18 REMARK 465 LYS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 GLU C -7 REMARK 465 ASN C -6 REMARK 465 LEU C -5 REMARK 465 TYR C -4 REMARK 465 PHE C -3 REMARK 465 GLN C -2 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ASN C 26 REMARK 465 GLN C 27 REMARK 465 ASN C 28 REMARK 465 LEU C 29 REMARK 465 VAL C 30 REMARK 465 ALA C 31 REMARK 465 PHE C 32 REMARK 465 THR C 82 REMARK 465 SER C 83 REMARK 465 ASP C 84 REMARK 465 ALA C 258 REMARK 465 MET A -20 REMARK 465 ASN A -19 REMARK 465 HIS A -18 REMARK 465 LYS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 27 REMARK 465 ASN A 28 REMARK 465 LEU A 29 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 THR A 82 REMARK 465 SER A 83 REMARK 465 GLN A 251 REMARK 465 ALA A 252 REMARK 465 LYS A 253 REMARK 465 LEU A 254 REMARK 465 ALA A 255 REMARK 465 GLU A 256 REMARK 465 LEU A 257 REMARK 465 ALA A 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ASN B 28 CG OD1 ND2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 VAL B 30 CG1 CG2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 ARG B 85 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 VAL B 248 CG1 CG2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 GLN B 251 CG CD OE1 NE2 REMARK 470 LYS C 80 CG CD CE NZ REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 VAL C 248 CG1 CG2 REMARK 470 LYS C 249 CG CD CE NZ REMARK 470 LYS C 250 CG CD CE NZ REMARK 470 GLN C 251 CG CD OE1 NE2 REMARK 470 LYS C 253 CG CD CE NZ REMARK 470 LEU C 254 CG CD1 CD2 REMARK 470 GLU C 256 CG CD OE1 OE2 REMARK 470 LEU C 257 CG CD1 CD2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ASN A 26 CG OD1 ND2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 DT D 5 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT D 5 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT D 5 C7 C6 REMARK 470 DT F 6 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT F 6 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F 6 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 133 OG SER A 139 2.02 REMARK 500 O LEU C 219 OG SER C 222 2.10 REMARK 500 O ASN C 33 OG1 THR C 36 2.18 REMARK 500 O PRO B 133 OG SER B 139 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 23 -81.54 -121.92 REMARK 500 LYS B 81 -120.16 57.06 REMARK 500 SER B 83 178.32 62.17 REMARK 500 ARG B 85 -154.60 61.00 REMARK 500 GLN B 128 -35.21 75.26 REMARK 500 SER B 158 -6.18 71.63 REMARK 500 LYS B 227 -123.40 62.21 REMARK 500 VAL B 230 60.53 -103.03 REMARK 500 PHE C 23 -70.65 -118.48 REMARK 500 GLU C 24 80.65 59.15 REMARK 500 LYS C 80 -70.09 -72.78 REMARK 500 GLN C 128 -34.90 74.41 REMARK 500 SER C 158 -3.02 72.92 REMARK 500 SER C 229 -149.79 47.11 REMARK 500 VAL C 248 -152.66 -68.95 REMARK 500 GLU A 24 -53.75 -26.98 REMARK 500 GLU A 25 -122.01 56.61 REMARK 500 GLN A 128 -34.33 73.19 REMARK 500 SER A 158 -6.43 72.47 REMARK 500 VAL A 248 151.44 71.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YBW RELATED DB: PDB REMARK 900 RELATED ID: 4YBX RELATED DB: PDB REMARK 900 RELATED ID: 5IP1 RELATED DB: PDB REMARK 900 RELATED ID: 5IP2 RELATED DB: PDB DBREF 5IP3 B 1 258 UNP F4ZD19 F4ZD19_TSWV 1 258 DBREF 5IP3 C 1 258 UNP F4ZD19 F4ZD19_TSWV 1 258 DBREF 5IP3 A 1 258 UNP F4ZD19 F4ZD19_TSWV 1 258 DBREF 5IP3 D 1 5 PDB 5IP3 5IP3 1 5 DBREF 5IP3 E 1 7 PDB 5IP3 5IP3 1 7 DBREF 5IP3 F 1 6 PDB 5IP3 5IP3 1 6 SEQADV 5IP3 MET B -20 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 ASN B -19 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B -18 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 LYS B -17 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B -16 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B -15 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B -14 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B -13 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B -12 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B -11 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 SER B -10 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 SER B -9 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLY B -8 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLU B -7 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 ASN B -6 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 LEU B -5 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 TYR B -4 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 PHE B -3 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLN B -2 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLY B -1 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS B 0 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 MET C -20 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 ASN C -19 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C -18 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 LYS C -17 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C -16 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C -15 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C -14 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C -13 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C -12 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C -11 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 SER C -10 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 SER C -9 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLY C -8 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLU C -7 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 ASN C -6 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 LEU C -5 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 TYR C -4 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 PHE C -3 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLN C -2 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLY C -1 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS C 0 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 MET A -20 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 ASN A -19 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A -18 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 LYS A -17 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A -16 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A -15 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A -14 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A -13 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A -12 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A -11 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 SER A -10 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 SER A -9 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLY A -8 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLU A -7 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 ASN A -6 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 LEU A -5 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 TYR A -4 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 PHE A -3 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLN A -2 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 GLY A -1 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP3 HIS A 0 UNP F4ZD19 EXPRESSION TAG SEQRES 1 B 279 MET ASN HIS LYS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 279 GLU ASN LEU TYR PHE GLN GLY HIS MET SER LYS VAL LYS SEQRES 3 B 279 LEU THR LYS GLU ASN ILE VAL ALA LEU LEU THR GLN GLY SEQRES 4 B 279 LYS ASP LEU GLU PHE GLU GLU ASN GLN ASN LEU VAL ALA SEQRES 5 B 279 PHE ASN PHE LYS THR PHE CYS LEU GLU ASN LEU ASP GLN SEQRES 6 B 279 ILE LYS LYS MET SER ILE ILE SER CYS LEU THR PHE LEU SEQRES 7 B 279 LYS ASN ARG GLN SER ILE MET LYS VAL ILE LYS GLN SER SEQRES 8 B 279 ASP PHE THR PHE GLY LYS ILE THR ILE LYS LYS THR SER SEQRES 9 B 279 ASP ARG ILE GLY ALA THR ASP MET THR PHE ARG ARG LEU SEQRES 10 B 279 ASP SER LEU ILE ARG VAL ARG LEU VAL GLU GLU THR GLY SEQRES 11 B 279 ASN SER GLU ASN LEU ASN THR ILE LYS SER LYS ILE ALA SEQRES 12 B 279 SER HIS PRO LEU ILE GLN ALA TYR GLY LEU PRO LEU ASP SEQRES 13 B 279 ASP ALA LYS SER VAL ARG LEU ALA ILE MET LEU GLY GLY SEQRES 14 B 279 SER LEU PRO LEU ILE ALA SER VAL ASP SER PHE GLU MET SEQRES 15 B 279 ILE SER VAL VAL LEU ALA ILE TYR GLN ASP ALA LYS TYR SEQRES 16 B 279 LYS ASP LEU GLY ILE ASP PRO LYS LYS TYR ASP THR LYS SEQRES 17 B 279 GLU ALA LEU GLY LYS VAL CYS THR VAL LEU LYS SER LYS SEQRES 18 B 279 ALA PHE GLU MET ASN GLU ASP GLN VAL LYS LYS GLY LYS SEQRES 19 B 279 GLU TYR ALA ALA ILE LEU SER SER SER ASN PRO ASN ALA SEQRES 20 B 279 LYS GLY SER VAL ALA MET GLU HIS TYR SER GLU THR LEU SEQRES 21 B 279 ASN LYS PHE TYR GLU MET PHE GLY VAL LYS LYS GLN ALA SEQRES 22 B 279 LYS LEU ALA GLU LEU ALA SEQRES 1 C 279 MET ASN HIS LYS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 279 GLU ASN LEU TYR PHE GLN GLY HIS MET SER LYS VAL LYS SEQRES 3 C 279 LEU THR LYS GLU ASN ILE VAL ALA LEU LEU THR GLN GLY SEQRES 4 C 279 LYS ASP LEU GLU PHE GLU GLU ASN GLN ASN LEU VAL ALA SEQRES 5 C 279 PHE ASN PHE LYS THR PHE CYS LEU GLU ASN LEU ASP GLN SEQRES 6 C 279 ILE LYS LYS MET SER ILE ILE SER CYS LEU THR PHE LEU SEQRES 7 C 279 LYS ASN ARG GLN SER ILE MET LYS VAL ILE LYS GLN SER SEQRES 8 C 279 ASP PHE THR PHE GLY LYS ILE THR ILE LYS LYS THR SER SEQRES 9 C 279 ASP ARG ILE GLY ALA THR ASP MET THR PHE ARG ARG LEU SEQRES 10 C 279 ASP SER LEU ILE ARG VAL ARG LEU VAL GLU GLU THR GLY SEQRES 11 C 279 ASN SER GLU ASN LEU ASN THR ILE LYS SER LYS ILE ALA SEQRES 12 C 279 SER HIS PRO LEU ILE GLN ALA TYR GLY LEU PRO LEU ASP SEQRES 13 C 279 ASP ALA LYS SER VAL ARG LEU ALA ILE MET LEU GLY GLY SEQRES 14 C 279 SER LEU PRO LEU ILE ALA SER VAL ASP SER PHE GLU MET SEQRES 15 C 279 ILE SER VAL VAL LEU ALA ILE TYR GLN ASP ALA LYS TYR SEQRES 16 C 279 LYS ASP LEU GLY ILE ASP PRO LYS LYS TYR ASP THR LYS SEQRES 17 C 279 GLU ALA LEU GLY LYS VAL CYS THR VAL LEU LYS SER LYS SEQRES 18 C 279 ALA PHE GLU MET ASN GLU ASP GLN VAL LYS LYS GLY LYS SEQRES 19 C 279 GLU TYR ALA ALA ILE LEU SER SER SER ASN PRO ASN ALA SEQRES 20 C 279 LYS GLY SER VAL ALA MET GLU HIS TYR SER GLU THR LEU SEQRES 21 C 279 ASN LYS PHE TYR GLU MET PHE GLY VAL LYS LYS GLN ALA SEQRES 22 C 279 LYS LEU ALA GLU LEU ALA SEQRES 1 A 279 MET ASN HIS LYS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 279 GLU ASN LEU TYR PHE GLN GLY HIS MET SER LYS VAL LYS SEQRES 3 A 279 LEU THR LYS GLU ASN ILE VAL ALA LEU LEU THR GLN GLY SEQRES 4 A 279 LYS ASP LEU GLU PHE GLU GLU ASN GLN ASN LEU VAL ALA SEQRES 5 A 279 PHE ASN PHE LYS THR PHE CYS LEU GLU ASN LEU ASP GLN SEQRES 6 A 279 ILE LYS LYS MET SER ILE ILE SER CYS LEU THR PHE LEU SEQRES 7 A 279 LYS ASN ARG GLN SER ILE MET LYS VAL ILE LYS GLN SER SEQRES 8 A 279 ASP PHE THR PHE GLY LYS ILE THR ILE LYS LYS THR SER SEQRES 9 A 279 ASP ARG ILE GLY ALA THR ASP MET THR PHE ARG ARG LEU SEQRES 10 A 279 ASP SER LEU ILE ARG VAL ARG LEU VAL GLU GLU THR GLY SEQRES 11 A 279 ASN SER GLU ASN LEU ASN THR ILE LYS SER LYS ILE ALA SEQRES 12 A 279 SER HIS PRO LEU ILE GLN ALA TYR GLY LEU PRO LEU ASP SEQRES 13 A 279 ASP ALA LYS SER VAL ARG LEU ALA ILE MET LEU GLY GLY SEQRES 14 A 279 SER LEU PRO LEU ILE ALA SER VAL ASP SER PHE GLU MET SEQRES 15 A 279 ILE SER VAL VAL LEU ALA ILE TYR GLN ASP ALA LYS TYR SEQRES 16 A 279 LYS ASP LEU GLY ILE ASP PRO LYS LYS TYR ASP THR LYS SEQRES 17 A 279 GLU ALA LEU GLY LYS VAL CYS THR VAL LEU LYS SER LYS SEQRES 18 A 279 ALA PHE GLU MET ASN GLU ASP GLN VAL LYS LYS GLY LYS SEQRES 19 A 279 GLU TYR ALA ALA ILE LEU SER SER SER ASN PRO ASN ALA SEQRES 20 A 279 LYS GLY SER VAL ALA MET GLU HIS TYR SER GLU THR LEU SEQRES 21 A 279 ASN LYS PHE TYR GLU MET PHE GLY VAL LYS LYS GLN ALA SEQRES 22 A 279 LYS LEU ALA GLU LEU ALA SEQRES 1 D 5 DT DT DT DT DT SEQRES 1 E 7 DT DT DT DT DT DT DT SEQRES 1 F 6 DT DT DT DT DT DT HELIX 1 AA1 THR B 7 GLN B 17 1 11 HELIX 2 AA2 ASN B 33 LYS B 46 1 14 HELIX 3 AA3 SER B 49 ASN B 59 1 11 HELIX 4 AA4 ASN B 59 LYS B 68 1 10 HELIX 5 AA5 THR B 92 GLU B 107 1 16 HELIX 6 AA6 ASN B 110 ILE B 121 1 12 HELIX 7 AA7 ALA B 122 HIS B 124 5 3 HELIX 8 AA8 ASP B 136 LEU B 146 1 11 HELIX 9 AA9 SER B 149 ALA B 154 1 6 HELIX 10 AB1 PHE B 159 LYS B 173 1 15 HELIX 11 AB2 ASP B 185 LYS B 200 1 16 HELIX 12 AB3 ASN B 205 SER B 221 1 17 HELIX 13 AB4 TYR B 235 PHE B 246 1 12 HELIX 14 AB5 THR C 7 GLN C 17 1 11 HELIX 15 AB6 PHE C 34 LYS C 46 1 13 HELIX 16 AB7 SER C 49 ASN C 59 1 11 HELIX 17 AB8 ASN C 59 GLN C 69 1 11 HELIX 18 AB9 THR C 92 THR C 108 1 17 HELIX 19 AC1 ASN C 110 ALA C 122 1 13 HELIX 20 AC2 PRO C 125 TYR C 130 1 6 HELIX 21 AC3 ASP C 136 LEU C 146 1 11 HELIX 22 AC4 SER C 149 ALA C 154 1 6 HELIX 23 AC5 PHE C 159 TYR C 174 1 16 HELIX 24 AC6 ASP C 185 LYS C 200 1 16 HELIX 25 AC7 ASN C 205 SER C 221 1 17 HELIX 26 AC8 VAL C 230 TYR C 235 1 6 HELIX 27 AC9 TYR C 235 GLU C 244 1 10 HELIX 28 AD1 MET C 245 GLY C 247 5 3 HELIX 29 AD2 THR A 7 GLN A 17 1 11 HELIX 30 AD3 ASN A 33 LYS A 46 1 14 HELIX 31 AD4 SER A 49 ASN A 59 1 11 HELIX 32 AD5 ASN A 59 LYS A 68 1 10 HELIX 33 AD6 THR A 92 GLU A 107 1 16 HELIX 34 AD7 ASN A 110 ILE A 121 1 12 HELIX 35 AD8 ALA A 122 HIS A 124 5 3 HELIX 36 AD9 ASP A 136 LEU A 146 1 11 HELIX 37 AE1 SER A 149 ALA A 154 1 6 HELIX 38 AE2 PHE A 159 LYS A 173 1 15 HELIX 39 AE3 ASP A 185 LYS A 200 1 16 HELIX 40 AE4 ASN A 205 SER A 221 1 17 HELIX 41 AE5 ALA A 226 TYR A 235 1 10 HELIX 42 AE6 TYR A 235 PHE A 246 1 12 SHEET 1 AA1 2 THR B 73 PHE B 74 0 SHEET 2 AA1 2 ILE B 77 THR B 78 -1 O ILE B 77 N PHE B 74 SHEET 1 AA2 2 PHE C 72 PHE C 74 0 SHEET 2 AA2 2 ILE C 77 ILE C 79 -1 O ILE C 79 N PHE C 72 SHEET 1 AA3 2 PHE A 72 PHE A 74 0 SHEET 2 AA3 2 ILE A 77 ILE A 79 -1 O ILE A 77 N PHE A 74 CRYST1 68.940 86.457 66.322 90.00 112.10 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014505 0.000000 0.005889 0.00000 SCALE2 0.000000 0.011566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016273 0.00000