HEADER TRANSPORT PROTEIN 23-MAR-16 5IX8 TITLE CRYSTAL STRUCTURE OF SUGAR ABC TRANSPORT SYSTEM, SUBSTRATE-BINDING TITLE 2 PROTEIN FROM BORDETELLA PARAPERTUSSIS 12822 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SUGAR ABC TRANSPORT SYSTEM, SUBSTRATE-BINDING COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PARAPERTUSSIS (STRAIN 12822 / ATCC SOURCE 3 BAA-587 / NCTC 13253); SOURCE 4 ORGANISM_TAXID: 257311; SOURCE 5 STRAIN: 12822 / ATCC BAA-587 / NCTC 13253; SOURCE 6 GENE: BPP2773; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 2 ABC TRANSPORTER, SOLUTE BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,M.CUFF,G.JOACHIMIAK,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-DEC-19 5IX8 1 REMARK REVDAT 3 20-SEP-17 5IX8 1 REMARK REVDAT 2 17-AUG-16 5IX8 1 KEYWDS REVDAT 1 06-APR-16 5IX8 0 JRNL AUTH C.CHANG,M.CUFF,G.JOACHIMIAK,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF SUGAR ABC TRANSPORT SYSTEM, JRNL TITL 2 SUBSTRATE-BINDING PROTEIN FROM BORDETELLA PARAPERTUSSIS JRNL TITL 3 12822 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 77787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9864 - 4.7892 0.97 2774 141 0.1760 0.1856 REMARK 3 2 4.7892 - 3.8056 0.99 2765 146 0.1341 0.1614 REMARK 3 3 3.8056 - 3.3258 1.00 2789 138 0.1395 0.1626 REMARK 3 4 3.3258 - 3.0223 0.99 2769 148 0.1481 0.1789 REMARK 3 5 3.0223 - 2.8060 0.99 2763 129 0.1446 0.1678 REMARK 3 6 2.8060 - 2.6408 0.99 2766 138 0.1463 0.1750 REMARK 3 7 2.6408 - 2.5086 1.00 2751 136 0.1414 0.1760 REMARK 3 8 2.5086 - 2.3995 0.99 2757 124 0.1412 0.1864 REMARK 3 9 2.3995 - 2.3072 0.99 2770 144 0.1344 0.1916 REMARK 3 10 2.3072 - 2.2276 0.99 2762 129 0.1282 0.1750 REMARK 3 11 2.2276 - 2.1580 0.99 2730 136 0.1248 0.1660 REMARK 3 12 2.1580 - 2.0964 0.99 2729 170 0.1239 0.1703 REMARK 3 13 2.0964 - 2.0412 1.00 2749 162 0.1228 0.2014 REMARK 3 14 2.0412 - 1.9914 0.99 2742 146 0.1210 0.1635 REMARK 3 15 1.9914 - 1.9462 1.00 2754 160 0.1273 0.1768 REMARK 3 16 1.9462 - 1.9048 1.00 2738 144 0.1211 0.1754 REMARK 3 17 1.9048 - 1.8667 1.00 2734 145 0.1241 0.1786 REMARK 3 18 1.8667 - 1.8315 1.00 2771 142 0.1247 0.1910 REMARK 3 19 1.8315 - 1.7988 1.00 2757 127 0.1265 0.2079 REMARK 3 20 1.7988 - 1.7683 1.00 2795 140 0.1253 0.2162 REMARK 3 21 1.7683 - 1.7398 1.00 2740 153 0.1313 0.1923 REMARK 3 22 1.7398 - 1.7130 1.00 2764 120 0.1366 0.2039 REMARK 3 23 1.7130 - 1.6878 1.00 2762 138 0.1419 0.2003 REMARK 3 24 1.6878 - 1.6641 0.99 2727 160 0.1479 0.2377 REMARK 3 25 1.6641 - 1.6416 0.98 2694 136 0.1552 0.2038 REMARK 3 26 1.6416 - 1.6203 0.96 2633 131 0.1576 0.2466 REMARK 3 27 1.6203 - 1.6000 0.90 2487 132 0.1774 0.2631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5079 REMARK 3 ANGLE : 1.148 6924 REMARK 3 CHIRALITY : 0.070 782 REMARK 3 PLANARITY : 0.008 906 REMARK 3 DIHEDRAL : 12.128 3059 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792910 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101987 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 1.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, TRIS-CL, PEG 3350, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.35950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 358 REMARK 465 THR A 359 REMARK 465 ALA A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 347 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 347 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 358 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 730 O HOH B 753 2.01 REMARK 500 OE2 GLU A 275 O HOH A 601 2.07 REMARK 500 O HOH A 624 O HOH A 695 2.12 REMARK 500 O HOH B 753 O HOH B 759 2.13 REMARK 500 OE2 GLU B 275 O HOH B 501 2.15 REMARK 500 O HOH A 784 O HOH A 853 2.15 REMARK 500 O HOH B 538 O HOH B 593 2.16 REMARK 500 NE2 GLN A 260 O HOH A 602 2.17 REMARK 500 O HOH B 531 O HOH B 737 2.17 REMARK 500 O HOH B 735 O HOH B 787 2.18 REMARK 500 NE2 GLN A 353 O HOH A 603 2.19 REMARK 500 O HOH A 858 O HOH B 736 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 779 O HOH B 741 2556 1.96 REMARK 500 O HOH A 812 O HOH B 579 2556 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 227 CG - SE - CE ANGL. DEV. = -14.3 DEGREES REMARK 500 MSE B 227 CG - SE - CE ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 -168.05 -127.37 REMARK 500 LEU A 158 -147.52 -155.26 REMARK 500 LEU A 158 -142.05 -155.26 REMARK 500 GLU A 192 -58.89 73.52 REMARK 500 PRO A 264 44.64 -79.99 REMARK 500 ALA A 271 106.76 79.91 REMARK 500 ASP B 66 -164.89 -125.59 REMARK 500 LEU B 158 -147.73 -155.57 REMARK 500 GLU B 192 -57.10 71.35 REMARK 500 PRO B 264 36.37 -84.51 REMARK 500 ALA B 271 101.62 78.56 REMARK 500 PRO B 324 49.82 -85.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC110229 RELATED DB: TARGETTRACK DBREF 5IX8 A 40 360 UNP Q7W6X1 Q7W6X1_BORPA 40 360 DBREF 5IX8 B 40 360 UNP Q7W6X1 Q7W6X1_BORPA 40 360 SEQRES 1 A 321 ASP ARG LEU GLN GLY ILE VAL GLU PRO ILE VAL ALA ARG SEQRES 2 A 321 GLN PRO LEU LYS LEU GLY VAL THR VAL VAL HIS LEU LEU SEQRES 3 A 321 ASP ASN PHE TYR LYS GLY ILE ALA TYR GLY ILE VAL ASP SEQRES 4 A 321 GLU ALA ARG ARG SER ASN VAL GLU VAL VAL GLN VAL ALA SEQRES 5 A 321 VAL ALA GLY ALA TYR GLY ASN VAL GLN GLN GLN PHE ALA SEQRES 6 A 321 GLN LEU GLN SER PHE LYS THR LEU GLY VAL ASP TYR ALA SEQRES 7 A 321 VAL LEU SER PRO ALA ALA TYR SER GLY TYR ASP PRO VAL SEQRES 8 A 321 VAL ALA ASP LEU ALA ARG SER GLY ILE LYS THR ILE SER SEQRES 9 A 321 ALA GLY ILE PRO VAL ASN SER ASP LYS ILE ALA PHE GLY SEQRES 10 A 321 VAL LEU GLN ASP ASP THR LEU ILE GLY LYS VAL LEU GLY SEQRES 11 A 321 LYS ALA LEU CYS ASP ASP GLY ALA GLN GLY LYS GLN VAL SEQRES 12 A 321 ILE VAL VAL PRO GLY ALA ALA GLY LEU GLU TRP PRO ARG SEQRES 13 A 321 LEU ARG TYR GLU GLY PHE LYS GLU VAL ALA SER ALA CYS SEQRES 14 A 321 GLY ALA LYS LEU THR PRO ALA ALA PHE ARG GLY GLU MSE SEQRES 15 A 321 SER LEU ALA ASP GLY MSE ALA GLN THR GLN ASP LEU LEU SEQRES 16 A 321 MSE ARG THR PRO ASP ALA GLU TYR VAL PHE THR PRO VAL SEQRES 17 A 321 THR PHE LEU GLY ILE GLY ALA VAL ARG ALA ALA ARG GLN SEQRES 18 A 321 ALA ASN ARG PRO VAL LYS VAL LEU THR SER ALA MSE VAL SEQRES 19 A 321 LYS GLU ASN GLU ALA MSE ILE ARG GLU GLY ARG LEU LEU SEQRES 20 A 321 ALA VAL ALA SER GLU PRO GLY VAL ILE MSE GLY ARG LEU SEQRES 21 A 321 ILE VAL GLN TYR ALA ILE ARG GLU HIS GLU GLY LEU PRO SEQRES 22 A 321 MSE PRO PRO LEU ASP LYS PRO THR ARG SER VAL PRO TYR SEQRES 23 A 321 PRO HIS PHE ASN VAL PRO ILE THR VAL VAL ASP LYS SER SEQRES 24 A 321 ASN VAL ASP THR HIS PRO TYR ALA PHE TYR ASP TYR PRO SEQRES 25 A 321 PRO GLN GLY TRP SER ILE GLU THR ALA SEQRES 1 B 321 ASP ARG LEU GLN GLY ILE VAL GLU PRO ILE VAL ALA ARG SEQRES 2 B 321 GLN PRO LEU LYS LEU GLY VAL THR VAL VAL HIS LEU LEU SEQRES 3 B 321 ASP ASN PHE TYR LYS GLY ILE ALA TYR GLY ILE VAL ASP SEQRES 4 B 321 GLU ALA ARG ARG SER ASN VAL GLU VAL VAL GLN VAL ALA SEQRES 5 B 321 VAL ALA GLY ALA TYR GLY ASN VAL GLN GLN GLN PHE ALA SEQRES 6 B 321 GLN LEU GLN SER PHE LYS THR LEU GLY VAL ASP TYR ALA SEQRES 7 B 321 VAL LEU SER PRO ALA ALA TYR SER GLY TYR ASP PRO VAL SEQRES 8 B 321 VAL ALA ASP LEU ALA ARG SER GLY ILE LYS THR ILE SER SEQRES 9 B 321 ALA GLY ILE PRO VAL ASN SER ASP LYS ILE ALA PHE GLY SEQRES 10 B 321 VAL LEU GLN ASP ASP THR LEU ILE GLY LYS VAL LEU GLY SEQRES 11 B 321 LYS ALA LEU CYS ASP ASP GLY ALA GLN GLY LYS GLN VAL SEQRES 12 B 321 ILE VAL VAL PRO GLY ALA ALA GLY LEU GLU TRP PRO ARG SEQRES 13 B 321 LEU ARG TYR GLU GLY PHE LYS GLU VAL ALA SER ALA CYS SEQRES 14 B 321 GLY ALA LYS LEU THR PRO ALA ALA PHE ARG GLY GLU MSE SEQRES 15 B 321 SER LEU ALA ASP GLY MSE ALA GLN THR GLN ASP LEU LEU SEQRES 16 B 321 MSE ARG THR PRO ASP ALA GLU TYR VAL PHE THR PRO VAL SEQRES 17 B 321 THR PHE LEU GLY ILE GLY ALA VAL ARG ALA ALA ARG GLN SEQRES 18 B 321 ALA ASN ARG PRO VAL LYS VAL LEU THR SER ALA MSE VAL SEQRES 19 B 321 LYS GLU ASN GLU ALA MSE ILE ARG GLU GLY ARG LEU LEU SEQRES 20 B 321 ALA VAL ALA SER GLU PRO GLY VAL ILE MSE GLY ARG LEU SEQRES 21 B 321 ILE VAL GLN TYR ALA ILE ARG GLU HIS GLU GLY LEU PRO SEQRES 22 B 321 MSE PRO PRO LEU ASP LYS PRO THR ARG SER VAL PRO TYR SEQRES 23 B 321 PRO HIS PHE ASN VAL PRO ILE THR VAL VAL ASP LYS SER SEQRES 24 B 321 ASN VAL ASP THR HIS PRO TYR ALA PHE TYR ASP TYR PRO SEQRES 25 B 321 PRO GLN GLY TRP SER ILE GLU THR ALA MODRES 5IX8 MSE A 221 MET MODIFIED RESIDUE MODRES 5IX8 MSE A 227 MET MODIFIED RESIDUE MODRES 5IX8 MSE A 235 MET MODIFIED RESIDUE MODRES 5IX8 MSE A 272 MET MODIFIED RESIDUE MODRES 5IX8 MSE A 279 MET MODIFIED RESIDUE MODRES 5IX8 MSE A 296 MET MODIFIED RESIDUE MODRES 5IX8 MSE A 313 MET MODIFIED RESIDUE MODRES 5IX8 MSE B 221 MET MODIFIED RESIDUE MODRES 5IX8 MSE B 227 MET MODIFIED RESIDUE MODRES 5IX8 MSE B 235 MET MODIFIED RESIDUE MODRES 5IX8 MSE B 272 MET MODIFIED RESIDUE MODRES 5IX8 MSE B 279 MET MODIFIED RESIDUE MODRES 5IX8 MSE B 296 MET MODIFIED RESIDUE MODRES 5IX8 MSE B 313 MET MODIFIED RESIDUE HET MSE A 221 8 HET MSE A 227 8 HET MSE A 235 8 HET MSE A 272 8 HET MSE A 279 8 HET MSE A 296 8 HET MSE A 313 8 HET MSE B 221 8 HET MSE B 227 8 HET MSE B 235 8 HET MSE B 272 8 HET MSE B 279 8 HET MSE B 296 8 HET MSE B 313 8 HET SO4 A 501 5 HET SO4 A 502 5 HET EDO A 503 4 HET EDO A 504 8 HET SO4 A 505 10 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET EDO B 405 4 HET EDO B 406 8 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 SO4 7(O4 S 2-) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 14 HOH *578(H2 O) HELIX 1 AA1 ASP A 66 SER A 83 1 18 HELIX 2 AA2 ASN A 98 GLY A 113 1 16 HELIX 3 AA3 TYR A 127 SER A 137 1 11 HELIX 4 AA4 ASP A 160 ASP A 175 1 16 HELIX 5 AA5 GLU A 192 CYS A 208 1 17 HELIX 6 AA6 SER A 222 THR A 237 1 16 HELIX 7 AA7 VAL A 247 ALA A 261 1 15 HELIX 8 AA8 GLU A 275 GLU A 282 1 8 HELIX 9 AA9 PRO A 292 GLY A 310 1 19 HELIX 10 AB1 PRO A 344 ASP A 349 1 6 HELIX 11 AB2 ASN B 67 SER B 83 1 17 HELIX 12 AB3 ASN B 98 LEU B 112 1 15 HELIX 13 AB4 TYR B 127 SER B 137 1 11 HELIX 14 AB5 ASP B 160 ASP B 175 1 16 HELIX 15 AB6 GLU B 192 CYS B 208 1 17 HELIX 16 AB7 SER B 222 THR B 237 1 16 HELIX 17 AB8 VAL B 247 ALA B 261 1 15 HELIX 18 AB9 GLU B 275 GLU B 282 1 8 HELIX 19 AC1 PRO B 292 GLY B 310 1 19 HELIX 20 AC2 PRO B 344 ASP B 349 1 6 SHEET 1 AA1 6 GLU A 86 VAL A 92 0 SHEET 2 AA1 6 LYS A 56 VAL A 61 1 N VAL A 59 O ALA A 91 SHEET 3 AA1 6 TYR A 116 LEU A 119 1 O VAL A 118 N THR A 60 SHEET 4 AA1 6 LYS A 140 ALA A 144 1 O ILE A 142 N ALA A 117 SHEET 5 AA1 6 PHE A 155 LEU A 158 1 O VAL A 157 N SER A 143 SHEET 6 AA1 6 HIS A 327 ASN A 329 1 O PHE A 328 N LEU A 158 SHEET 1 AA2 6 LYS A 211 LEU A 212 0 SHEET 2 AA2 6 GLN A 181 VAL A 184 1 N VAL A 182 O LYS A 211 SHEET 3 AA2 6 ALA A 240 PHE A 244 1 O PHE A 244 N ILE A 183 SHEET 4 AA2 6 LYS A 266 SER A 270 1 O LEU A 268 N VAL A 243 SHEET 5 AA2 6 LEU A 285 ALA A 289 1 O LEU A 286 N VAL A 267 SHEET 6 AA2 6 VAL A 334 VAL A 335 -1 O VAL A 335 N VAL A 288 SHEET 1 AA3 6 GLU B 86 VAL B 92 0 SHEET 2 AA3 6 LYS B 56 VAL B 61 1 N LEU B 57 O GLU B 86 SHEET 3 AA3 6 TYR B 116 LEU B 119 1 O VAL B 118 N GLY B 58 SHEET 4 AA3 6 LYS B 140 ALA B 144 1 O ILE B 142 N ALA B 117 SHEET 5 AA3 6 PHE B 155 LEU B 158 1 O VAL B 157 N SER B 143 SHEET 6 AA3 6 HIS B 327 ASN B 329 1 O PHE B 328 N LEU B 158 SHEET 1 AA4 6 LYS B 211 LEU B 212 0 SHEET 2 AA4 6 GLN B 181 VAL B 184 1 N VAL B 182 O LYS B 211 SHEET 3 AA4 6 ALA B 240 PHE B 244 1 O PHE B 244 N ILE B 183 SHEET 4 AA4 6 LYS B 266 SER B 270 1 O LEU B 268 N VAL B 243 SHEET 5 AA4 6 LEU B 285 ALA B 289 1 O ALA B 289 N THR B 269 SHEET 6 AA4 6 VAL B 334 VAL B 335 -1 O VAL B 335 N VAL B 288 SSBOND 1 CYS A 173 CYS A 208 1555 1555 2.08 SSBOND 2 CYS B 173 CYS B 208 1555 1555 2.09 LINK C GLU A 220 N MSE A 221 1555 1555 1.32 LINK C MSE A 221 N SER A 222 1555 1555 1.34 LINK C GLY A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N ALA A 228 1555 1555 1.33 LINK C LEU A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N ARG A 236 1555 1555 1.33 LINK C ALA A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N VAL A 273 1555 1555 1.33 LINK C ALA A 278 N MSE A 279 1555 1555 1.33 LINK C MSE A 279 N ILE A 280 1555 1555 1.34 LINK C ILE A 295 N MSE A 296 1555 1555 1.34 LINK C MSE A 296 N GLY A 297 1555 1555 1.34 LINK C PRO A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N PRO A 314 1555 1555 1.33 LINK C GLU B 220 N MSE B 221 1555 1555 1.32 LINK C MSE B 221 N SER B 222 1555 1555 1.33 LINK C GLY B 226 N MSE B 227 1555 1555 1.33 LINK C MSE B 227 N ALA B 228 1555 1555 1.34 LINK C LEU B 234 N MSE B 235 1555 1555 1.32 LINK C MSE B 235 N ARG B 236 1555 1555 1.33 LINK C ALA B 271 N MSE B 272 1555 1555 1.34 LINK C MSE B 272 N VAL B 273 1555 1555 1.33 LINK C ALA B 278 N MSE B 279 1555 1555 1.33 LINK C MSE B 279 N ILE B 280 1555 1555 1.34 LINK C ILE B 295 N MSE B 296 1555 1555 1.33 LINK C MSE B 296 N GLY B 297 1555 1555 1.34 LINK C PRO B 312 N MSE B 313 1555 1555 1.34 LINK C MSE B 313 N PRO B 314 1555 1555 1.32 SITE 1 AC1 9 GLY A 190 LEU A 191 GLU A 192 ARG A 195 SITE 2 AC1 9 HOH A 650 HOH A 660 HOH A 672 HOH A 688 SITE 3 AC1 9 HOH A 735 SITE 1 AC2 3 ARG A 259 ARG A 284 HOH A 608 SITE 1 AC3 3 ALA A 95 TYR A 96 GLU A 220 SITE 1 AC4 5 GLY A 219 HOH A 610 HOH A 621 HOH A 670 SITE 2 AC4 5 HOH A 795 SITE 1 AC5 9 THR A 320 ARG A 321 HOH A 671 HOH A 674 SITE 2 AC5 9 HOH A 691 HOH A 694 HOH A 696 THR B 320 SITE 3 AC5 9 ARG B 321 SITE 1 AC6 3 ARG B 259 ARG B 284 HOH B 515 SITE 1 AC7 9 GLY B 190 LEU B 191 GLU B 192 ARG B 195 SITE 2 AC7 9 HOH B 542 HOH B 569 HOH B 574 HOH B 589 SITE 3 AC7 9 HOH B 680 SITE 1 AC8 6 ARG A 218 ALA B 224 ARG B 256 HOH B 511 SITE 2 AC8 6 HOH B 517 HOH B 675 SITE 1 AC9 6 ILE B 49 VAL B 50 ARG B 52 HOH B 505 SITE 2 AC9 6 HOH B 506 HOH B 599 SITE 1 AD1 3 ALA B 95 TYR B 96 GLU B 220 SITE 1 AD2 4 ARG B 41 PRO B 48 HOH B 525 HOH B 536 CRYST1 59.557 78.719 66.890 90.00 104.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016791 0.000000 0.004444 0.00000 SCALE2 0.000000 0.012703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015465 0.00000