HEADER REPLICATION 23-MAR-16 5IXA TITLE HCMV DNA POLYMERASE PROCESSIVITY SUBUNIT UL44 AT NEUTRAL PH AND LOW TITLE 2 SALT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE PROCESSIVITY FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLYMERASE ACCESSORY PROTEIN,PAP,PROTEIN ICP36; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CYTOMEGALOVIRUS (STRAIN AD169); SOURCE 3 ORGANISM_COMMON: HHV-5; SOURCE 4 ORGANISM_TAXID: 10360; SOURCE 5 STRAIN: AD169; SOURCE 6 GENE: UL44; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HCMV POL ACCESSORY SUBUNIT, PROTEIN-PROTEIN INTERACTION, HUMAN KEYWDS 2 CYTOMEGALOVIRUS, DNA POLYMERASE, PROCESSIVITY FACTOR, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR H.CHEN,D.M.COEN,J.M.HOGLE,D.J.FILMAN REVDAT 5 27-SEP-23 5IXA 1 REMARK REVDAT 4 11-DEC-19 5IXA 1 REMARK REVDAT 3 20-SEP-17 5IXA 1 REMARK REVDAT 2 01-MAR-17 5IXA 1 JRNL REVDAT 1 30-NOV-16 5IXA 0 JRNL AUTH H.CHEN,M.COSENO,S.B.FICARRO,M.S.MANSUETO,G.KOMAZIN-MEREDITH, JRNL AUTH 2 S.BOISSEL,D.J.FILMAN,J.A.MARTO,J.M.HOGLE,D.M.COEN JRNL TITL A SMALL COVALENT ALLOSTERIC INHIBITOR OF HUMAN JRNL TITL 2 CYTOMEGALOVIRUS DNA POLYMERASE SUBUNIT INTERACTIONS. JRNL REF ACS INFECT DIS V. 3 112 2017 JRNL REFN ESSN 2373-8227 JRNL PMID 28183184 JRNL DOI 10.1021/ACSINFECDIS.6B00079 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1117 - 5.3638 0.94 2811 143 0.1866 0.2104 REMARK 3 2 5.3638 - 4.2594 0.97 2797 163 0.1596 0.2193 REMARK 3 3 4.2594 - 3.7216 0.98 2775 155 0.2014 0.2416 REMARK 3 4 3.7216 - 3.3815 0.99 2786 143 0.2217 0.2732 REMARK 3 5 3.3815 - 3.1393 0.99 2787 144 0.2316 0.3124 REMARK 3 6 3.1393 - 2.9543 0.99 2781 149 0.2519 0.3017 REMARK 3 7 2.9543 - 2.8064 0.99 2734 165 0.2733 0.3239 REMARK 3 8 2.8064 - 2.6843 0.95 2649 125 0.3038 0.3642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4003 REMARK 3 ANGLE : 1.587 5441 REMARK 3 CHIRALITY : 0.076 657 REMARK 3 PLANARITY : 0.013 687 REMARK 3 DIHEDRAL : 20.445 1462 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2772 70.9092 75.9575 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.1786 REMARK 3 T33: 0.1779 T12: 0.0221 REMARK 3 T13: 0.0053 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.0129 L22: 0.0405 REMARK 3 L33: 0.0105 L12: -0.0240 REMARK 3 L13: -0.0081 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: 0.0597 S13: 0.1110 REMARK 3 S21: 0.0155 S22: -0.0167 S23: -0.1007 REMARK 3 S31: -0.0407 S32: -0.0143 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5233 74.7625 73.1392 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.2614 REMARK 3 T33: 0.3139 T12: 0.0207 REMARK 3 T13: 0.1290 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.0315 L22: 0.0119 REMARK 3 L33: 0.0556 L12: 0.0030 REMARK 3 L13: 0.0401 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0070 S13: 0.0649 REMARK 3 S21: -0.0246 S22: -0.0444 S23: -0.0060 REMARK 3 S31: -0.0665 S32: 0.0155 S33: -0.0348 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2448 91.6490 64.2843 REMARK 3 T TENSOR REMARK 3 T11: 0.2376 T22: 0.2278 REMARK 3 T33: 0.2138 T12: 0.0672 REMARK 3 T13: -0.0153 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 0.0061 L22: 0.0266 REMARK 3 L33: 0.0849 L12: -0.0114 REMARK 3 L13: -0.0156 L23: 0.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: 0.1428 S13: 0.1374 REMARK 3 S21: 0.0233 S22: -0.0921 S23: -0.0105 REMARK 3 S31: -0.0225 S32: -0.1129 S33: -0.0116 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7490 43.0159 68.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.1703 REMARK 3 T33: 0.1786 T12: -0.0171 REMARK 3 T13: 0.0351 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.0162 L22: 0.0229 REMARK 3 L33: 0.0191 L12: 0.0170 REMARK 3 L13: -0.0177 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.0685 S13: -0.0042 REMARK 3 S21: -0.0769 S22: -0.0487 S23: -0.0408 REMARK 3 S31: -0.0195 S32: -0.0582 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1606 39.0101 72.3338 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.1602 REMARK 3 T33: 0.2707 T12: -0.0246 REMARK 3 T13: 0.0056 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.0169 L22: 0.0058 REMARK 3 L33: 0.0113 L12: -0.0097 REMARK 3 L13: 0.0038 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0368 S13: -0.0463 REMARK 3 S21: 0.0072 S22: -0.0272 S23: 0.0006 REMARK 3 S31: 0.0329 S32: 0.0423 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7064 26.0528 55.1148 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1890 REMARK 3 T33: 0.1479 T12: -0.1446 REMARK 3 T13: -0.0186 T23: -0.2789 REMARK 3 L TENSOR REMARK 3 L11: 0.0182 L22: 0.0725 REMARK 3 L33: 0.0142 L12: 0.0071 REMARK 3 L13: 0.0144 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.0071 S13: 0.0106 REMARK 3 S21: -0.0745 S22: -0.0195 S23: 0.1329 REMARK 3 S31: 0.0036 S32: 0.0015 S33: 0.0150 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.684 REMARK 200 RESOLUTION RANGE LOW (A) : 37.108 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1T6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 MICROLITER OF 8 MG/ML UL44 IN THE REMARK 280 STORAGE BUFFER (20 MM TRIS (PH 7.5), 500 MM NACL, 0.1 MM EDTA, 2 REMARK 280 MM DTT AND 5% GLYCEROL) AND 0.2 MICROLITER CRYSTALLIZATION REMARK 280 BUFFER (0.1 M HEPES (PH 7.0) AND 18% PEG12K) WERE MIXED AND REMARK 280 CRYSTALLIZED IN SITTING DROPS OVER THE CRYSTALLIZATION BUFFER AT REMARK 280 ROOM TEMPERATURE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.51300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.81950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.41450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.81950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.51300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.41450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 THR A 164 REMARK 465 ARG A 165 REMARK 465 VAL A 166 REMARK 465 LYS A 167 REMARK 465 ARG A 168 REMARK 465 ASN A 169 REMARK 465 VAL A 170 REMARK 465 LYS A 171 REMARK 465 LYS A 172 REMARK 465 ALA A 173 REMARK 465 PRO A 174 REMARK 465 CYS A 175 REMARK 465 PRO A 176 REMARK 465 PRO A 271 REMARK 465 PHE A 272 REMARK 465 GLN A 273 REMARK 465 ARG A 274 REMARK 465 GLY A 275 REMARK 465 ASP A 276 REMARK 465 PRO A 277 REMARK 465 PHE A 278 REMARK 465 ASP A 279 REMARK 465 LYS A 280 REMARK 465 ASN A 281 REMARK 465 TYR A 282 REMARK 465 VAL A 283 REMARK 465 GLY A 284 REMARK 465 ASN A 285 REMARK 465 SER A 286 REMARK 465 GLY A 287 REMARK 465 LYS A 288 REMARK 465 SER A 289 REMARK 465 ARG A 290 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 THR B 5 REMARK 465 ARG B 6 REMARK 465 LEU B 7 REMARK 465 HIS B 163 REMARK 465 THR B 164 REMARK 465 ARG B 165 REMARK 465 VAL B 166 REMARK 465 LYS B 167 REMARK 465 ARG B 168 REMARK 465 ASN B 169 REMARK 465 VAL B 170 REMARK 465 LYS B 171 REMARK 465 LYS B 172 REMARK 465 ALA B 173 REMARK 465 PRO B 174 REMARK 465 CYS B 175 REMARK 465 PRO B 176 REMARK 465 GLN B 273 REMARK 465 ARG B 274 REMARK 465 GLY B 275 REMARK 465 ASP B 276 REMARK 465 PRO B 277 REMARK 465 PHE B 278 REMARK 465 ASP B 279 REMARK 465 LYS B 280 REMARK 465 ASN B 281 REMARK 465 TYR B 282 REMARK 465 VAL B 283 REMARK 465 GLY B 284 REMARK 465 ASN B 285 REMARK 465 SER B 286 REMARK 465 GLY B 287 REMARK 465 LYS B 288 REMARK 465 SER B 289 REMARK 465 ARG B 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 163 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASP A 120 O HOH A 301 1.81 REMARK 500 O HOH B 329 O HOH B 347 1.83 REMARK 500 O HOH B 327 O HOH B 331 1.85 REMARK 500 O HOH B 316 O HOH B 349 1.89 REMARK 500 OD1 ASP B 249 O HOH B 301 1.92 REMARK 500 O HOH B 351 O HOH B 352 1.96 REMARK 500 N LYS B 35 O HOH B 302 1.97 REMARK 500 OE1 GLN A 76 O HOH A 302 2.01 REMARK 500 NZ LYS A 224 O HOH A 303 2.01 REMARK 500 OE2 GLU B 264 O HOH B 303 2.04 REMARK 500 CB LYS B 35 O HOH B 302 2.08 REMARK 500 O ALA B 128 O HOH B 304 2.12 REMARK 500 ND2 ASN B 37 O VAL B 53 2.17 REMARK 500 O SER A 111 O HOH A 304 2.18 REMARK 500 NZ LYS B 73 O HOH B 305 2.18 REMARK 500 O HOH B 330 O HOH B 354 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 339 O HOH B 317 3656 2.12 REMARK 500 O HOH A 336 O HOH B 350 4466 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 84 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 LYS A 224 CB - CG - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 LYS A 224 CG - CD - CE ANGL. DEV. = 24.5 DEGREES REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 CYS B 129 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 -162.43 -117.74 REMARK 500 ARG A 54 -154.52 -141.60 REMARK 500 SER A 55 -71.24 -62.43 REMARK 500 LYS A 73 2.86 -69.52 REMARK 500 ALA A 186 -67.48 -91.36 REMARK 500 SER A 205 96.00 -56.29 REMARK 500 ASN A 206 -143.20 -130.91 REMARK 500 HIS A 212 30.56 -92.19 REMARK 500 LYS A 215 -166.76 -72.50 REMARK 500 PRO A 239 150.82 -49.66 REMARK 500 GLU A 247 -102.02 -84.21 REMARK 500 LYS B 35 -164.73 -115.98 REMARK 500 ARG B 54 -152.12 -137.72 REMARK 500 SER B 55 -75.29 -61.66 REMARK 500 LYS B 158 34.27 -73.94 REMARK 500 TRP B 159 -14.40 -146.25 REMARK 500 ALA B 186 -64.09 -90.52 REMARK 500 SER B 205 102.80 -55.00 REMARK 500 ASN B 206 -133.16 -131.59 REMARK 500 HIS B 212 -70.13 -95.69 REMARK 500 ASP B 249 142.53 177.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YYP RELATED DB: PDB REMARK 900 RELATED ID: 1T6L RELATED DB: PDB REMARK 900 RELATED ID: 5IWD RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT THE SER 205 IS INDEED CORRECT DBREF 5IXA A 1 290 UNP P16790 VPAP_HCMVA 1 290 DBREF 5IXA B 1 290 UNP P16790 VPAP_HCMVA 1 290 SEQADV 5IXA SER A 205 UNP P16790 ALA 205 SEE REMARK 999 SEQADV 5IXA SER B 205 UNP P16790 ALA 205 SEE REMARK 999 SEQRES 1 A 290 MET ASP ARG LYS THR ARG LEU SER GLU PRO PRO THR LEU SEQRES 2 A 290 ALA LEU ARG LEU LYS PRO TYR LYS THR ALA ILE GLN GLN SEQRES 3 A 290 LEU ARG SER VAL ILE ARG ALA LEU LYS GLU ASN THR THR SEQRES 4 A 290 VAL THR PHE LEU PRO THR PRO SER LEU ILE LEU GLN THR SEQRES 5 A 290 VAL ARG SER HIS CYS VAL SER LYS ILE THR PHE ASN SER SEQRES 6 A 290 SER CYS LEU TYR ILE THR ASP LYS SER PHE GLN PRO LYS SEQRES 7 A 290 THR ILE ASN ASN SER THR PRO LEU LEU GLY ASN PHE MET SEQRES 8 A 290 TYR LEU THR SER SER LYS ASP LEU THR LYS PHE TYR VAL SEQRES 9 A 290 GLN ASP ILE SER ASP LEU SER ALA LYS ILE SER MET CYS SEQRES 10 A 290 ALA PRO ASP PHE ASN MET GLU PHE SER SER ALA CYS VAL SEQRES 11 A 290 HIS GLY GLN ASP ILE VAL ARG GLU SER GLU ASN SER ALA SEQRES 12 A 290 VAL HIS VAL ASP LEU ASP PHE GLY VAL VAL ALA ASP LEU SEQRES 13 A 290 LEU LYS TRP ILE GLY PRO HIS THR ARG VAL LYS ARG ASN SEQRES 14 A 290 VAL LYS LYS ALA PRO CYS PRO THR GLY THR VAL GLN ILE SEQRES 15 A 290 LEU VAL HIS ALA GLY PRO PRO ALA ILE LYS PHE ILE LEU SEQRES 16 A 290 THR ASN GLY SER GLU LEU GLU PHE THR SER ASN ASN ARG SEQRES 17 A 290 VAL SER PHE HIS GLY VAL LYS ASN MET ARG ILE ASN VAL SEQRES 18 A 290 GLN LEU LYS ASN PHE TYR GLN THR LEU LEU ASN CYS ALA SEQRES 19 A 290 VAL THR LYS LEU PRO CYS THR LEU ARG ILE VAL THR GLU SEQRES 20 A 290 HIS ASP THR LEU LEU TYR VAL ALA SER ARG ASN GLY LEU SEQRES 21 A 290 PHE ALA VAL GLU ASN PHE LEU THR GLU GLU PRO PHE GLN SEQRES 22 A 290 ARG GLY ASP PRO PHE ASP LYS ASN TYR VAL GLY ASN SER SEQRES 23 A 290 GLY LYS SER ARG SEQRES 1 B 290 MET ASP ARG LYS THR ARG LEU SER GLU PRO PRO THR LEU SEQRES 2 B 290 ALA LEU ARG LEU LYS PRO TYR LYS THR ALA ILE GLN GLN SEQRES 3 B 290 LEU ARG SER VAL ILE ARG ALA LEU LYS GLU ASN THR THR SEQRES 4 B 290 VAL THR PHE LEU PRO THR PRO SER LEU ILE LEU GLN THR SEQRES 5 B 290 VAL ARG SER HIS CYS VAL SER LYS ILE THR PHE ASN SER SEQRES 6 B 290 SER CYS LEU TYR ILE THR ASP LYS SER PHE GLN PRO LYS SEQRES 7 B 290 THR ILE ASN ASN SER THR PRO LEU LEU GLY ASN PHE MET SEQRES 8 B 290 TYR LEU THR SER SER LYS ASP LEU THR LYS PHE TYR VAL SEQRES 9 B 290 GLN ASP ILE SER ASP LEU SER ALA LYS ILE SER MET CYS SEQRES 10 B 290 ALA PRO ASP PHE ASN MET GLU PHE SER SER ALA CYS VAL SEQRES 11 B 290 HIS GLY GLN ASP ILE VAL ARG GLU SER GLU ASN SER ALA SEQRES 12 B 290 VAL HIS VAL ASP LEU ASP PHE GLY VAL VAL ALA ASP LEU SEQRES 13 B 290 LEU LYS TRP ILE GLY PRO HIS THR ARG VAL LYS ARG ASN SEQRES 14 B 290 VAL LYS LYS ALA PRO CYS PRO THR GLY THR VAL GLN ILE SEQRES 15 B 290 LEU VAL HIS ALA GLY PRO PRO ALA ILE LYS PHE ILE LEU SEQRES 16 B 290 THR ASN GLY SER GLU LEU GLU PHE THR SER ASN ASN ARG SEQRES 17 B 290 VAL SER PHE HIS GLY VAL LYS ASN MET ARG ILE ASN VAL SEQRES 18 B 290 GLN LEU LYS ASN PHE TYR GLN THR LEU LEU ASN CYS ALA SEQRES 19 B 290 VAL THR LYS LEU PRO CYS THR LEU ARG ILE VAL THR GLU SEQRES 20 B 290 HIS ASP THR LEU LEU TYR VAL ALA SER ARG ASN GLY LEU SEQRES 21 B 290 PHE ALA VAL GLU ASN PHE LEU THR GLU GLU PRO PHE GLN SEQRES 22 B 290 ARG GLY ASP PRO PHE ASP LYS ASN TYR VAL GLY ASN SER SEQRES 23 B 290 GLY LYS SER ARG FORMUL 3 HOH *98(H2 O) HELIX 1 AA1 ARG A 16 LEU A 27 1 12 HELIX 2 AA2 LEU A 27 LEU A 34 1 8 HELIX 3 AA3 PHE A 90 SER A 95 1 6 HELIX 4 AA4 ASP A 149 GLY A 161 1 13 HELIX 5 AA5 LEU A 223 VAL A 235 1 13 HELIX 6 AA6 ARG B 16 LEU B 27 1 12 HELIX 7 AA7 LEU B 27 LEU B 34 1 8 HELIX 8 AA8 PHE B 90 SER B 95 1 6 HELIX 9 AA9 ASP B 149 LYS B 158 1 10 HELIX 10 AB1 LEU B 223 VAL B 235 1 13 SHEET 1 AA110 LEU A 68 ILE A 70 0 SHEET 2 AA110 THR A 12 LEU A 15 -1 N ALA A 14 O TYR A 69 SHEET 3 AA110 LYS A 101 GLN A 105 -1 O VAL A 104 N LEU A 13 SHEET 4 AA110 SER A 111 ALA A 118 -1 O SER A 115 N TYR A 103 SHEET 5 AA110 PHE A 121 ALA A 128 -1 O PHE A 125 N ILE A 114 SHEET 6 AA110 PHE B 121 ALA B 128 -1 O GLU B 124 N GLU A 124 SHEET 7 AA110 SER B 111 ALA B 118 -1 N MET B 116 O MET B 123 SHEET 8 AA110 LYS B 101 GLN B 105 -1 N GLN B 105 O LYS B 113 SHEET 9 AA110 THR B 12 LEU B 15 -1 N LEU B 13 O VAL B 104 SHEET 10 AA110 LEU B 68 ILE B 70 -1 O TYR B 69 N ALA B 14 SHEET 1 AA2 9 LYS A 78 ASN A 81 0 SHEET 2 AA2 9 THR A 38 LEU A 43 -1 N PHE A 42 O LYS A 78 SHEET 3 AA2 9 SER A 47 VAL A 53 -1 O ILE A 49 N THR A 41 SHEET 4 AA2 9 CYS A 57 PHE A 63 -1 O ILE A 61 N LEU A 50 SHEET 5 AA2 9 PHE A 261 THR A 268 -1 O GLU A 264 N LYS A 60 SHEET 6 AA2 9 LEU A 251 ARG A 257 -1 N LEU A 252 O LEU A 267 SHEET 7 AA2 9 CYS A 240 VAL A 245 -1 N ARG A 243 O TYR A 253 SHEET 8 AA2 9 VAL A 144 LEU A 148 -1 N VAL A 146 O LEU A 242 SHEET 9 AA2 9 VAL A 209 PHE A 211 -1 O SER A 210 N ASP A 147 SHEET 1 AA3 2 SER A 83 THR A 84 0 SHEET 2 AA3 2 GLY A 88 ASN A 89 -1 O GLY A 88 N THR A 84 SHEET 1 AA4 4 GLU A 200 THR A 204 0 SHEET 2 AA4 4 ALA A 190 LEU A 195 -1 N ILE A 191 O PHE A 203 SHEET 3 AA4 4 THR A 179 HIS A 185 -1 N GLN A 181 O ILE A 194 SHEET 4 AA4 4 MET A 217 GLN A 222 -1 O ILE A 219 N ILE A 182 SHEET 1 AA5 9 LYS B 78 ASN B 81 0 SHEET 2 AA5 9 THR B 38 LEU B 43 -1 N PHE B 42 O LYS B 78 SHEET 3 AA5 9 SER B 47 VAL B 53 -1 O GLN B 51 N THR B 39 SHEET 4 AA5 9 CYS B 57 PHE B 63 -1 O ILE B 61 N LEU B 50 SHEET 5 AA5 9 PHE B 261 THR B 268 -1 O GLU B 264 N LYS B 60 SHEET 6 AA5 9 LEU B 251 ARG B 257 -1 N LEU B 252 O LEU B 267 SHEET 7 AA5 9 CYS B 240 VAL B 245 -1 N THR B 241 O ALA B 255 SHEET 8 AA5 9 VAL B 144 LEU B 148 -1 N LEU B 148 O CYS B 240 SHEET 9 AA5 9 VAL B 209 GLY B 213 -1 O GLY B 213 N HIS B 145 SHEET 1 AA6 2 SER B 83 THR B 84 0 SHEET 2 AA6 2 GLY B 88 ASN B 89 -1 O GLY B 88 N THR B 84 SHEET 1 AA7 4 GLU B 200 THR B 204 0 SHEET 2 AA7 4 ALA B 190 ILE B 194 -1 N ILE B 191 O PHE B 203 SHEET 3 AA7 4 THR B 179 HIS B 185 -1 N LEU B 183 O LYS B 192 SHEET 4 AA7 4 MET B 217 GLN B 222 -1 O ILE B 219 N ILE B 182 CISPEP 1 THR A 45 PRO A 46 0 3.48 CISPEP 2 GLY A 187 PRO A 188 0 -1.08 CISPEP 3 THR B 45 PRO B 46 0 3.25 CISPEP 4 GLY B 187 PRO B 188 0 -1.15 CRYST1 75.026 100.829 109.639 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009121 0.00000