data_5J2R # _entry.id 5J2R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5J2R WWPDB D_1000219851 BMRB 30050 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB . 30050 unspecified PDB . 5J17 unspecified PDB . 5J18 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5J2R _pdbx_database_status.recvd_initial_deposition_date 2016-03-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dutta, K.' 1 'Vasquez-Del Carpio, R.' 2 'Aggarwal, A.K.' 3 'Reddy, E.P.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 165 _citation.language ? _citation.page_first 643 _citation.page_last 655 _citation.title 'A Small Molecule RAS-Mimetic Disrupts RAS Association with Effector Proteins to Block Signaling.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2016.03.045 _citation.pdbx_database_id_PubMed 27104980 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Athuluri-Divakar, S.K.' 1 primary 'Vasquez-Del Carpio, R.' 2 primary 'Dutta, K.' 3 primary 'Baker, S.J.' 4 primary 'Cosenza, S.C.' 5 primary 'Basu, I.' 6 primary 'Gupta, Y.K.' 7 primary 'Reddy, M.V.' 8 primary 'Ueno, L.' 9 primary 'Hart, J.R.' 10 primary 'Vogt, P.K.' 11 primary 'Mulholland, D.' 12 primary 'Guha, C.' 13 primary 'Aggarwal, A.K.' 14 primary 'Reddy, E.P.' 15 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase B-raf' 10311.078 1 2.7.11.1 ? 'residues 151-232' ? 2 non-polymer syn 'N-[2-methoxy-5-({[(E)-2-(2,4,6-trimethoxyphenyl)ethenyl]sulfonyl}methyl)phenyl]glycine' 451.490 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proto-oncogene B-Raf,p94,v-Raf murine sarcoma viral oncogene homolog B1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSLEVLFQGPSPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGE ELHVEVLENVPL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSLEVLFQGPSPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGE ELHVEVLENVPL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LEU n 1 4 GLU n 1 5 VAL n 1 6 LEU n 1 7 PHE n 1 8 GLN n 1 9 GLY n 1 10 PRO n 1 11 SER n 1 12 PRO n 1 13 GLN n 1 14 LYS n 1 15 PRO n 1 16 ILE n 1 17 VAL n 1 18 ARG n 1 19 VAL n 1 20 PHE n 1 21 LEU n 1 22 PRO n 1 23 ASN n 1 24 LYS n 1 25 GLN n 1 26 ARG n 1 27 THR n 1 28 VAL n 1 29 VAL n 1 30 PRO n 1 31 ALA n 1 32 ARG n 1 33 CYS n 1 34 GLY n 1 35 VAL n 1 36 THR n 1 37 VAL n 1 38 ARG n 1 39 ASP n 1 40 SER n 1 41 LEU n 1 42 LYS n 1 43 LYS n 1 44 ALA n 1 45 LEU n 1 46 MET n 1 47 MET n 1 48 ARG n 1 49 GLY n 1 50 LEU n 1 51 ILE n 1 52 PRO n 1 53 GLU n 1 54 CYS n 1 55 CYS n 1 56 ALA n 1 57 VAL n 1 58 TYR n 1 59 ARG n 1 60 ILE n 1 61 GLN n 1 62 ASP n 1 63 GLY n 1 64 GLU n 1 65 LYS n 1 66 LYS n 1 67 PRO n 1 68 ILE n 1 69 GLY n 1 70 TRP n 1 71 ASP n 1 72 THR n 1 73 ASP n 1 74 ILE n 1 75 SER n 1 76 TRP n 1 77 LEU n 1 78 THR n 1 79 GLY n 1 80 GLU n 1 81 GLU n 1 82 LEU n 1 83 HIS n 1 84 VAL n 1 85 GLU n 1 86 VAL n 1 87 LEU n 1 88 GLU n 1 89 ASN n 1 90 VAL n 1 91 PRO n 1 92 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 92 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRAF, BRAF1, RAFB1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3 pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRAF_HUMAN _struct_ref.pdbx_db_accession P15056 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SPQKPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKKPIGWDTDISWLTGEELHVEVLENV PL ; _struct_ref.pdbx_align_begin 151 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5J2R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 92 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15056 _struct_ref_seq.db_align_beg 151 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 232 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 151 _struct_ref_seq.pdbx_auth_seq_align_end 232 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5J2R GLY A 1 ? UNP P15056 ? ? 'expression tag' 141 1 1 5J2R SER A 2 ? UNP P15056 ? ? 'expression tag' 142 2 1 5J2R LEU A 3 ? UNP P15056 ? ? 'expression tag' 143 3 1 5J2R GLU A 4 ? UNP P15056 ? ? 'expression tag' 144 4 1 5J2R VAL A 5 ? UNP P15056 ? ? 'expression tag' 145 5 1 5J2R LEU A 6 ? UNP P15056 ? ? 'expression tag' 146 6 1 5J2R PHE A 7 ? UNP P15056 ? ? 'expression tag' 147 7 1 5J2R GLN A 8 ? UNP P15056 ? ? 'expression tag' 148 8 1 5J2R GLY A 9 ? UNP P15056 ? ? 'expression tag' 149 9 1 5J2R PRO A 10 ? UNP P15056 ? ? 'expression tag' 150 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6FS non-polymer . 'N-[2-methoxy-5-({[(E)-2-(2,4,6-trimethoxyphenyl)ethenyl]sulfonyl}methyl)phenyl]glycine' ? 'C21 H25 N O8 S' 451.490 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 2 isotropic 2 1 1 '2D 1H-13C HSQC aliphatic' 2 isotropic 3 1 1 '2D 1H-13C HSQC aromatic' 2 isotropic 4 1 1 '3D 1H-15N NOESY' 1 isotropic 5 1 1 '3D 1H-13C NOESY aliphatic' 2 isotropic 6 1 1 '3D 1H-13C NOESY aromatic' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 200 _pdbx_nmr_exptl_sample_conditions.details '200 uM B-RAF RBD complexed with 1000uM of Rigosertib in 20 mM KH2PO4, 200 mM NaCl, pH 7.4.' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label Condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '200 uM [U-99% 13C; U-99% 15N] B-RAF RBD:Rigosertib Complex II, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 'C13/N15 sample' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '200 uM B-RAF RBD complexed with 1000uM of Rigosertib in 20 mM KH2PO4, 200 mM NaCl, pH 7.4.' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 Avance ? Bruker 800 ? 2 Avance ? Bruker 900 ? # _pdbx_nmr_refine.entry_id 5J2R _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5J2R _pdbx_nmr_ensemble.conformers_calculated_total_number 1024 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5J2R _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement ARIA ? ;Linge, O'Donoghue and Nilges ; 2 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5J2R _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5J2R _struct.title 'Solution structure of Ras Binding Domain (RBD) of B-Raf' _struct.pdbx_descriptor 'Serine/threonine-protein kinase B-raf (E.C.2.7.11.1)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5J2R _struct_keywords.text 'MAPK, PI3K, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 21 ? GLN A 25 ? LEU A 161 GLN A 165 5 ? 5 HELX_P HELX_P2 AA2 THR A 36 ? ARG A 48 ? THR A 176 ARG A 188 1 ? 13 HELX_P HELX_P3 AA3 ASP A 73 ? LEU A 77 ? ASP A 213 LEU A 217 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 27 ? PRO A 30 ? THR A 167 PRO A 170 AA1 2 ILE A 16 ? PHE A 20 ? ILE A 156 PHE A 160 AA1 3 GLU A 81 ? VAL A 86 ? GLU A 221 VAL A 226 AA1 4 CYS A 55 ? ILE A 60 ? CYS A 195 ILE A 200 AA1 5 LYS A 65 ? ILE A 68 ? LYS A 205 ILE A 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 27 ? O THR A 167 N VAL A 19 ? N VAL A 159 AA1 2 3 N PHE A 20 ? N PHE A 160 O LEU A 82 ? O LEU A 222 AA1 3 4 O HIS A 83 ? O HIS A 223 N TYR A 58 ? N TYR A 198 AA1 4 5 N VAL A 57 ? N VAL A 197 O ILE A 68 ? O ILE A 208 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 6FS _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'binding site for residue 6FS A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LYS A 14 ? LYS A 154 . ? 1_555 ? 2 AC1 8 GLN A 25 ? GLN A 165 . ? 1_555 ? 3 AC1 8 ARG A 26 ? ARG A 166 . ? 1_555 ? 4 AC1 8 THR A 27 ? THR A 167 . ? 1_555 ? 5 AC1 8 VAL A 28 ? VAL A 168 . ? 1_555 ? 6 AC1 8 PRO A 30 ? PRO A 170 . ? 1_555 ? 7 AC1 8 LYS A 43 ? LYS A 183 . ? 1_555 ? 8 AC1 8 ARG A 48 ? ARG A 188 . ? 1_555 ? # _atom_sites.entry_id 5J2R _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 141 ? ? ? A . n A 1 2 SER 2 142 ? ? ? A . n A 1 3 LEU 3 143 ? ? ? A . n A 1 4 GLU 4 144 ? ? ? A . n A 1 5 VAL 5 145 ? ? ? A . n A 1 6 LEU 6 146 ? ? ? A . n A 1 7 PHE 7 147 ? ? ? A . n A 1 8 GLN 8 148 ? ? ? A . n A 1 9 GLY 9 149 ? ? ? A . n A 1 10 PRO 10 150 ? ? ? A . n A 1 11 SER 11 151 151 SER SER A . n A 1 12 PRO 12 152 152 PRO PRO A . n A 1 13 GLN 13 153 153 GLN GLN A . n A 1 14 LYS 14 154 154 LYS LYS A . n A 1 15 PRO 15 155 155 PRO PRO A . n A 1 16 ILE 16 156 156 ILE ILE A . n A 1 17 VAL 17 157 157 VAL VAL A . n A 1 18 ARG 18 158 158 ARG ARG A . n A 1 19 VAL 19 159 159 VAL VAL A . n A 1 20 PHE 20 160 160 PHE PHE A . n A 1 21 LEU 21 161 161 LEU LEU A . n A 1 22 PRO 22 162 162 PRO PRO A . n A 1 23 ASN 23 163 163 ASN ASN A . n A 1 24 LYS 24 164 164 LYS LYS A . n A 1 25 GLN 25 165 165 GLN GLN A . n A 1 26 ARG 26 166 166 ARG ARG A . n A 1 27 THR 27 167 167 THR THR A . n A 1 28 VAL 28 168 168 VAL VAL A . n A 1 29 VAL 29 169 169 VAL VAL A . n A 1 30 PRO 30 170 170 PRO PRO A . n A 1 31 ALA 31 171 171 ALA ALA A . n A 1 32 ARG 32 172 172 ARG ARG A . n A 1 33 CYS 33 173 173 CYS CYS A . n A 1 34 GLY 34 174 174 GLY GLY A . n A 1 35 VAL 35 175 175 VAL VAL A . n A 1 36 THR 36 176 176 THR THR A . n A 1 37 VAL 37 177 177 VAL VAL A . n A 1 38 ARG 38 178 178 ARG ARG A . n A 1 39 ASP 39 179 179 ASP ASP A . n A 1 40 SER 40 180 180 SER SER A . n A 1 41 LEU 41 181 181 LEU LEU A . n A 1 42 LYS 42 182 182 LYS LYS A . n A 1 43 LYS 43 183 183 LYS LYS A . n A 1 44 ALA 44 184 184 ALA ALA A . n A 1 45 LEU 45 185 185 LEU LEU A . n A 1 46 MET 46 186 186 MET MET A . n A 1 47 MET 47 187 187 MET MET A . n A 1 48 ARG 48 188 188 ARG ARG A . n A 1 49 GLY 49 189 189 GLY GLY A . n A 1 50 LEU 50 190 190 LEU LEU A . n A 1 51 ILE 51 191 191 ILE ILE A . n A 1 52 PRO 52 192 192 PRO PRO A . n A 1 53 GLU 53 193 193 GLU GLU A . n A 1 54 CYS 54 194 194 CYS CYS A . n A 1 55 CYS 55 195 195 CYS CYS A . n A 1 56 ALA 56 196 196 ALA ALA A . n A 1 57 VAL 57 197 197 VAL VAL A . n A 1 58 TYR 58 198 198 TYR TYR A . n A 1 59 ARG 59 199 199 ARG ARG A . n A 1 60 ILE 60 200 200 ILE ILE A . n A 1 61 GLN 61 201 201 GLN GLN A . n A 1 62 ASP 62 202 202 ASP ASP A . n A 1 63 GLY 63 203 203 GLY GLY A . n A 1 64 GLU 64 204 204 GLU GLU A . n A 1 65 LYS 65 205 205 LYS LYS A . n A 1 66 LYS 66 206 206 LYS LYS A . n A 1 67 PRO 67 207 207 PRO PRO A . n A 1 68 ILE 68 208 208 ILE ILE A . n A 1 69 GLY 69 209 209 GLY GLY A . n A 1 70 TRP 70 210 210 TRP TRP A . n A 1 71 ASP 71 211 211 ASP ASP A . n A 1 72 THR 72 212 212 THR THR A . n A 1 73 ASP 73 213 213 ASP ASP A . n A 1 74 ILE 74 214 214 ILE ILE A . n A 1 75 SER 75 215 215 SER SER A . n A 1 76 TRP 76 216 216 TRP TRP A . n A 1 77 LEU 77 217 217 LEU LEU A . n A 1 78 THR 78 218 218 THR THR A . n A 1 79 GLY 79 219 219 GLY GLY A . n A 1 80 GLU 80 220 220 GLU GLU A . n A 1 81 GLU 81 221 221 GLU GLU A . n A 1 82 LEU 82 222 222 LEU LEU A . n A 1 83 HIS 83 223 223 HIS HIS A . n A 1 84 VAL 84 224 224 VAL VAL A . n A 1 85 GLU 85 225 225 GLU GLU A . n A 1 86 VAL 86 226 226 VAL VAL A . n A 1 87 LEU 87 227 227 LEU LEU A . n A 1 88 GLU 88 228 228 GLU GLU A . n A 1 89 ASN 89 229 229 ASN ASN A . n A 1 90 VAL 90 230 230 VAL VAL A . n A 1 91 PRO 91 231 231 PRO PRO A . n A 1 92 LEU 92 232 232 LEU LEU A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 6FS _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 6FS _pdbx_nonpoly_scheme.auth_mon_id L01 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2016-05-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'B-RAF RBD:Rigosertib Complex II' _pdbx_nmr_exptl_sample.concentration 200 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units uM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-99% 13C; U-99% 15N]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 H A PHE 160 ? ? O A LEU 222 ? ? 1.58 2 6 OD2 A ASP 213 ? ? HG A SER 215 ? ? 1.55 3 7 OD1 A ASP 213 ? ? HG A SER 215 ? ? 1.52 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 152 ? ? -55.84 109.88 2 1 GLN A 201 ? ? -104.23 -138.92 3 1 ASP A 202 ? ? -55.18 81.87 4 2 GLN A 201 ? ? -102.04 -141.15 5 2 ASP A 202 ? ? -56.54 80.99 6 3 PRO A 152 ? ? -57.08 109.78 7 3 GLN A 201 ? ? -103.00 -137.07 8 3 ASP A 202 ? ? -57.45 78.62 9 3 ASN A 229 ? ? -113.63 61.28 10 3 VAL A 230 ? ? 38.35 70.28 11 4 PRO A 152 ? ? -59.58 104.81 12 4 ALA A 171 ? ? -64.10 88.40 13 4 GLN A 201 ? ? -101.45 -140.86 14 4 ASP A 202 ? ? -56.15 81.43 15 5 ALA A 171 ? ? -68.06 82.37 16 5 GLN A 201 ? ? -106.08 -146.79 17 5 ASP A 202 ? ? -49.12 82.03 18 5 LEU A 217 ? ? -88.33 31.07 19 6 PRO A 152 ? ? -64.42 96.46 20 6 ALA A 171 ? ? -62.72 95.19 21 6 GLN A 201 ? ? -111.19 -136.50 22 6 ASP A 202 ? ? -52.94 80.65 23 7 ALA A 171 ? ? -65.30 87.98 24 7 GLN A 201 ? ? -113.34 -138.96 25 7 ASP A 202 ? ? -56.30 78.76 26 8 ASN A 163 ? ? 75.87 43.97 27 8 ALA A 171 ? ? -67.72 85.30 28 8 GLN A 201 ? ? -103.76 -137.66 29 8 ASP A 202 ? ? -57.81 80.17 30 8 ASN A 229 ? ? -158.80 67.78 31 9 GLN A 201 ? ? -99.41 -142.11 32 9 ASP A 202 ? ? -55.23 78.84 33 9 ASN A 229 ? ? -99.94 56.24 34 9 PRO A 231 ? ? -73.86 -73.41 35 10 GLN A 201 ? ? -111.25 -139.45 36 10 ASP A 202 ? ? -53.17 82.71 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 141 ? A GLY 1 2 1 Y 1 A SER 142 ? A SER 2 3 1 Y 1 A LEU 143 ? A LEU 3 4 1 Y 1 A GLU 144 ? A GLU 4 5 1 Y 1 A VAL 145 ? A VAL 5 6 1 Y 1 A LEU 146 ? A LEU 6 7 1 Y 1 A PHE 147 ? A PHE 7 8 1 Y 1 A GLN 148 ? A GLN 8 9 1 Y 1 A GLY 149 ? A GLY 9 10 1 Y 1 A PRO 150 ? A PRO 10 11 2 Y 1 A GLY 141 ? A GLY 1 12 2 Y 1 A SER 142 ? A SER 2 13 2 Y 1 A LEU 143 ? A LEU 3 14 2 Y 1 A GLU 144 ? A GLU 4 15 2 Y 1 A VAL 145 ? A VAL 5 16 2 Y 1 A LEU 146 ? A LEU 6 17 2 Y 1 A PHE 147 ? A PHE 7 18 2 Y 1 A GLN 148 ? A GLN 8 19 2 Y 1 A GLY 149 ? A GLY 9 20 2 Y 1 A PRO 150 ? A PRO 10 21 3 Y 1 A GLY 141 ? A GLY 1 22 3 Y 1 A SER 142 ? A SER 2 23 3 Y 1 A LEU 143 ? A LEU 3 24 3 Y 1 A GLU 144 ? A GLU 4 25 3 Y 1 A VAL 145 ? A VAL 5 26 3 Y 1 A LEU 146 ? A LEU 6 27 3 Y 1 A PHE 147 ? A PHE 7 28 3 Y 1 A GLN 148 ? A GLN 8 29 3 Y 1 A GLY 149 ? A GLY 9 30 3 Y 1 A PRO 150 ? A PRO 10 31 4 Y 1 A GLY 141 ? A GLY 1 32 4 Y 1 A SER 142 ? A SER 2 33 4 Y 1 A LEU 143 ? A LEU 3 34 4 Y 1 A GLU 144 ? A GLU 4 35 4 Y 1 A VAL 145 ? A VAL 5 36 4 Y 1 A LEU 146 ? A LEU 6 37 4 Y 1 A PHE 147 ? A PHE 7 38 4 Y 1 A GLN 148 ? A GLN 8 39 4 Y 1 A GLY 149 ? A GLY 9 40 4 Y 1 A PRO 150 ? A PRO 10 41 5 Y 1 A GLY 141 ? A GLY 1 42 5 Y 1 A SER 142 ? A SER 2 43 5 Y 1 A LEU 143 ? A LEU 3 44 5 Y 1 A GLU 144 ? A GLU 4 45 5 Y 1 A VAL 145 ? A VAL 5 46 5 Y 1 A LEU 146 ? A LEU 6 47 5 Y 1 A PHE 147 ? A PHE 7 48 5 Y 1 A GLN 148 ? A GLN 8 49 5 Y 1 A GLY 149 ? A GLY 9 50 5 Y 1 A PRO 150 ? A PRO 10 51 6 Y 1 A GLY 141 ? A GLY 1 52 6 Y 1 A SER 142 ? A SER 2 53 6 Y 1 A LEU 143 ? A LEU 3 54 6 Y 1 A GLU 144 ? A GLU 4 55 6 Y 1 A VAL 145 ? A VAL 5 56 6 Y 1 A LEU 146 ? A LEU 6 57 6 Y 1 A PHE 147 ? A PHE 7 58 6 Y 1 A GLN 148 ? A GLN 8 59 6 Y 1 A GLY 149 ? A GLY 9 60 6 Y 1 A PRO 150 ? A PRO 10 61 7 Y 1 A GLY 141 ? A GLY 1 62 7 Y 1 A SER 142 ? A SER 2 63 7 Y 1 A LEU 143 ? A LEU 3 64 7 Y 1 A GLU 144 ? A GLU 4 65 7 Y 1 A VAL 145 ? A VAL 5 66 7 Y 1 A LEU 146 ? A LEU 6 67 7 Y 1 A PHE 147 ? A PHE 7 68 7 Y 1 A GLN 148 ? A GLN 8 69 7 Y 1 A GLY 149 ? A GLY 9 70 7 Y 1 A PRO 150 ? A PRO 10 71 8 Y 1 A GLY 141 ? A GLY 1 72 8 Y 1 A SER 142 ? A SER 2 73 8 Y 1 A LEU 143 ? A LEU 3 74 8 Y 1 A GLU 144 ? A GLU 4 75 8 Y 1 A VAL 145 ? A VAL 5 76 8 Y 1 A LEU 146 ? A LEU 6 77 8 Y 1 A PHE 147 ? A PHE 7 78 8 Y 1 A GLN 148 ? A GLN 8 79 8 Y 1 A GLY 149 ? A GLY 9 80 8 Y 1 A PRO 150 ? A PRO 10 81 9 Y 1 A GLY 141 ? A GLY 1 82 9 Y 1 A SER 142 ? A SER 2 83 9 Y 1 A LEU 143 ? A LEU 3 84 9 Y 1 A GLU 144 ? A GLU 4 85 9 Y 1 A VAL 145 ? A VAL 5 86 9 Y 1 A LEU 146 ? A LEU 6 87 9 Y 1 A PHE 147 ? A PHE 7 88 9 Y 1 A GLN 148 ? A GLN 8 89 9 Y 1 A GLY 149 ? A GLY 9 90 9 Y 1 A PRO 150 ? A PRO 10 91 10 Y 1 A GLY 141 ? A GLY 1 92 10 Y 1 A SER 142 ? A SER 2 93 10 Y 1 A LEU 143 ? A LEU 3 94 10 Y 1 A GLU 144 ? A GLU 4 95 10 Y 1 A VAL 145 ? A VAL 5 96 10 Y 1 A LEU 146 ? A LEU 6 97 10 Y 1 A PHE 147 ? A PHE 7 98 10 Y 1 A GLN 148 ? A GLN 8 99 10 Y 1 A GLY 149 ? A GLY 9 100 10 Y 1 A PRO 150 ? A PRO 10 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'N-[2-methoxy-5-({[(E)-2-(2,4,6-trimethoxyphenyl)ethenyl]sulfonyl}methyl)phenyl]glycine' _pdbx_entity_nonpoly.comp_id 6FS #