HEADER HYDROLASE/INHIBITOR 31-MAR-16 5J47 TITLE THE X-RAY STRUCTURE OF INHIBITOR BOUND TO JCV HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARGE T ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 261-628; COMPND 5 SYNONYM: LT-AG; COMPND 6 EC: 3.6.4.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JC POLYOMAVIRUS; SOURCE 3 ORGANISM_COMMON: JCPYV; SOURCE 4 ORGANISM_TAXID: 10632; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICASE, HEXAMER, ZN, ATP, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.TER HAAR REVDAT 3 06-MAR-24 5J47 1 JRNL REMARK REVDAT 2 24-AUG-16 5J47 1 JRNL REVDAT 1 20-JUL-16 5J47 0 JRNL AUTH D.BONAFOUX,S.NANTHAKUMAR,U.K.BANDARAGE,C.MEMMOTT,D.LOWE, JRNL AUTH 2 A.M.ARONOV,G.R.BHISETTI,K.C.BONANNO,J.COLL,J.LEEMAN, JRNL AUTH 3 C.A.LEPRE,F.LU,E.PEROLA,R.RIJNBRAND,W.P.TAYLOR,D.WILSON, JRNL AUTH 4 Y.ZHOU,J.ZWAHLEN,E.TER HAAR JRNL TITL FRAGMENT-BASED DISCOVERY OF DUAL JC VIRUS AND BK VIRUS JRNL TITL 2 HELICASE INHIBITORS. JRNL REF J.MED.CHEM. V. 59 7138 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27385654 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00486 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 31960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1620 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2976 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1931 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2821 REMARK 3 BIN R VALUE (WORKING SET) : 0.1899 REMARK 3 BIN FREE R VALUE : 0.2537 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.21 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2854 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09730 REMARK 3 B22 (A**2) : 0.09730 REMARK 3 B33 (A**2) : -0.19460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.257 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.161 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.151 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.140 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2968 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4029 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1041 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 73 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 449 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2968 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 374 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3609 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.59 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.45 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|701 - A|701 A|266 - A|356 } REMARK 3 ORIGIN FOR THE GROUP (A): -23.9670 7.2293 -13.1755 REMARK 3 T TENSOR REMARK 3 T11: -0.1580 T22: -0.1214 REMARK 3 T33: 0.1824 T12: 0.0097 REMARK 3 T13: 0.0028 T23: 0.0813 REMARK 3 L TENSOR REMARK 3 L11: 2.1614 L22: 5.0116 REMARK 3 L33: 1.1608 L12: 0.7530 REMARK 3 L13: -0.8897 L23: 1.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.0743 S12: 0.2503 S13: 0.1261 REMARK 3 S21: -0.1118 S22: -0.0151 S23: 0.2596 REMARK 3 S31: 0.0325 S32: -0.1630 S33: -0.0591 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|357 - A|512 A|516 - A|627 } REMARK 3 ORIGIN FOR THE GROUP (A): -31.7149 19.4534 15.3559 REMARK 3 T TENSOR REMARK 3 T11: -0.2001 T22: -0.2071 REMARK 3 T33: 0.2198 T12: -0.0151 REMARK 3 T13: 0.0159 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 2.9571 L22: 1.3011 REMARK 3 L33: 0.7678 L12: 0.5338 REMARK 3 L13: 0.0304 L23: -0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.1770 S12: -0.1542 S13: -0.0998 REMARK 3 S21: 0.1113 S22: -0.1113 S23: -0.1775 REMARK 3 S31: -0.0190 S32: 0.0828 S33: -0.0656 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999971 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 31.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL BUTTON REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-30% PEG400, 0.1 M LISO4, 0.1M HEPES REMARK 280 (PH 7.0), 0.2 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 94010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 257 REMARK 465 SER A 258 REMARK 465 HIS A 259 REMARK 465 MET A 260 REMARK 465 GLU A 261 REMARK 465 GLU A 262 REMARK 465 PRO A 263 REMARK 465 GLU A 264 REMARK 465 GLU A 265 REMARK 465 LYS A 513 REMARK 465 HIS A 514 REMARK 465 GLN A 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 266 OG1 CG2 REMARK 470 HIS A 355 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 517 CG CD CE NZ REMARK 470 ARG A 536 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 314 -64.27 -104.78 REMARK 500 LYS A 419 -7.94 69.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1141 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1142 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1143 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1144 DISTANCE = 8.61 ANGSTROMS REMARK 525 HOH A1145 DISTANCE = 9.13 ANGSTROMS REMARK 525 HOH A1146 DISTANCE = 9.43 ANGSTROMS REMARK 525 HOH A1147 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH A1148 DISTANCE = 10.17 ANGSTROMS REMARK 525 HOH A1149 DISTANCE = 11.88 ANGSTROMS REMARK 525 HOH A1150 DISTANCE = 15.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 303 SG REMARK 620 2 CYS A 306 SG 123.6 REMARK 620 3 HIS A 314 NE2 97.0 119.3 REMARK 620 4 HIS A 318 ND1 105.3 106.7 102.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6JJ A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J40 RELATED DB: PDB REMARK 900 RELATED ID: 5J4V RELATED DB: PDB REMARK 900 RELATED ID: 5J4Y RELATED DB: PDB DBREF 5J47 A 261 628 UNP P03072 LT_POVJC 261 628 SEQADV 5J47 GLY A 257 UNP P03072 EXPRESSION TAG SEQADV 5J47 SER A 258 UNP P03072 EXPRESSION TAG SEQADV 5J47 HIS A 259 UNP P03072 EXPRESSION TAG SEQADV 5J47 MET A 260 UNP P03072 EXPRESSION TAG SEQADV 5J47 ASP A 280 UNP P03072 GLU 280 ENGINEERED MUTATION SEQADV 5J47 ASN A 295 UNP P03072 ASP 295 ENGINEERED MUTATION SEQADV 5J47 ALA A 299 UNP P03072 ASN 299 ENGINEERED MUTATION SEQADV 5J47 ALA A 301 UNP P03072 GLN 301 ENGINEERED MUTATION SEQADV 5J47 ALA A 302 UNP P03072 GLN 302 ENGINEERED MUTATION SEQADV 5J47 ALA A 304 UNP P03072 LYS 304 ENGINEERED MUTATION SEQADV 5J47 ALA A 305 UNP P03072 LYS 305 ENGINEERED MUTATION SEQADV 5J47 ALA A 307 UNP P03072 GLU 307 ENGINEERED MUTATION SEQADV 5J47 ALA A 308 UNP P03072 LYS 308 ENGINEERED MUTATION SEQADV 5J47 ALA A 309 UNP P03072 LYS 309 ENGINEERED MUTATION SEQADV 5J47 LEU A 354 UNP P03072 ILE 354 ENGINEERED MUTATION SEQADV 5J47 GLU A 408 UNP P03072 ASP 408 ENGINEERED MUTATION SEQADV 5J47 ALA A 624 UNP P03072 ARG 624 ENGINEERED MUTATION SEQRES 1 A 372 GLY SER HIS MET GLU GLU PRO GLU GLU THR LYS GLN VAL SEQRES 2 A 372 SER TRP LYS LEU VAL THR GLN TYR ALA LEU ASP THR LYS SEQRES 3 A 372 CYS GLU ASP VAL PHE LEU LEU MET GLY MET TYR LEU ASN SEQRES 4 A 372 PHE GLN GLU ALA PRO ALA ALA CYS ALA ALA CYS ALA ALA SEQRES 5 A 372 ALA ASP GLN PRO ASN HIS PHE ASN HIS HIS GLU LYS HIS SEQRES 6 A 372 TYR TYR ASN ALA GLN ILE PHE ALA ASP SER LYS ASN GLN SEQRES 7 A 372 LYS SER ILE CYS GLN GLN ALA VAL ASP THR VAL ALA ALA SEQRES 8 A 372 LYS GLN ARG VAL ASP SER LEU HIS MET THR ARG GLU GLU SEQRES 9 A 372 MET LEU VAL GLU ARG PHE ASN PHE LEU LEU ASP LYS MET SEQRES 10 A 372 ASP LEU ILE PHE GLY ALA HIS GLY ASN ALA VAL LEU GLU SEQRES 11 A 372 GLN TYR MET ALA GLY VAL ALA TRP ILE HIS CYS LEU LEU SEQRES 12 A 372 PRO GLN MET ASP THR VAL ILE TYR GLU PHE LEU LYS CYS SEQRES 13 A 372 ILE VAL LEU ASN ILE PRO LYS LYS ARG TYR TRP LEU PHE SEQRES 14 A 372 LYS GLY PRO ILE ASP SER GLY LYS THR THR LEU ALA ALA SEQRES 15 A 372 ALA LEU LEU ASP LEU CYS GLY GLY LYS SER LEU ASN VAL SEQRES 16 A 372 ASN MET PRO LEU GLU ARG LEU ASN PHE GLU LEU GLY VAL SEQRES 17 A 372 GLY ILE ASP GLN PHE MET VAL VAL PHE GLU ASP VAL LYS SEQRES 18 A 372 GLY THR GLY ALA GLU SER ARG ASP LEU PRO SER GLY HIS SEQRES 19 A 372 GLY ILE SER ASN LEU ASP CYS LEU ARG ASP TYR LEU ASP SEQRES 20 A 372 GLY SER VAL LYS VAL ASN LEU GLU ARG LYS HIS GLN ASN SEQRES 21 A 372 LYS ARG THR GLN VAL PHE PRO PRO GLY ILE VAL THR MET SEQRES 22 A 372 ASN GLU TYR SER VAL PRO ARG THR LEU GLN ALA ARG PHE SEQRES 23 A 372 VAL ARG GLN ILE ASP PHE ARG PRO LYS ALA TYR LEU ARG SEQRES 24 A 372 LYS SER LEU SER CYS SER GLU TYR LEU LEU GLU LYS ARG SEQRES 25 A 372 ILE LEU GLN SER GLY MET THR LEU LEU LEU LEU LEU ILE SEQRES 26 A 372 TRP PHE ARG PRO VAL ALA ASP PHE ALA ALA ALA ILE HIS SEQRES 27 A 372 GLU ARG ILE VAL GLN TRP LYS GLU ARG LEU ASP LEU GLU SEQRES 28 A 372 ILE SER MET TYR THR PHE SER THR MET LYS ALA ASN VAL SEQRES 29 A 372 GLY MET GLY ALA PRO ILE LEU ASP HET ZN A 701 1 HET MES A 702 24 HET 6JJ A 703 21 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM 6JJ 6-(2-PHENOXYPHENYL)[1,2,4]TRIAZOLO[3,4-B][1,3, HETNAM 2 6JJ 4]THIADIAZOLE FORMUL 2 ZN ZN 2+ FORMUL 3 MES C6 H13 N O4 S FORMUL 4 6JJ C15 H10 N4 O S FORMUL 5 HOH *350(H2 O) HELIX 1 AA1 SER A 270 THR A 281 1 12 HELIX 2 AA2 ASP A 285 ASN A 295 1 11 HELIX 3 AA3 ALA A 299 ALA A 302 5 4 HELIX 4 AA4 CYS A 303 ALA A 309 1 7 HELIX 5 AA5 GLN A 311 ASN A 316 1 6 HELIX 6 AA6 HIS A 317 ASP A 330 1 14 HELIX 7 AA7 ASN A 333 MET A 356 1 24 HELIX 8 AA8 THR A 357 PHE A 377 1 21 HELIX 9 AA9 VAL A 384 LEU A 399 1 16 HELIX 10 AB1 GLN A 401 ASN A 416 1 16 HELIX 11 AB2 GLY A 432 GLY A 445 1 14 HELIX 12 AB3 PRO A 454 GLY A 463 1 10 HELIX 13 AB4 VAL A 464 ILE A 466 5 3 HELIX 14 AB5 ALA A 481 ASP A 485 5 5 HELIX 15 AB6 HIS A 490 ASP A 496 1 7 HELIX 16 AB7 LEU A 498 GLY A 504 1 7 HELIX 17 AB8 PRO A 535 ALA A 540 1 6 HELIX 18 AB9 LYS A 551 CYS A 560 1 10 HELIX 19 AC1 GLU A 562 LYS A 567 1 6 HELIX 20 AC2 SER A 572 ARG A 584 1 13 HELIX 21 AC3 PRO A 585 PHE A 589 5 5 HELIX 22 AC4 ALA A 590 ALA A 592 5 3 HELIX 23 AC5 ILE A 593 ILE A 608 1 16 HELIX 24 AC6 SER A 609 MET A 622 1 14 SHEET 1 AA1 5 LYS A 447 LEU A 449 0 SHEET 2 AA1 5 VAL A 471 VAL A 476 1 O VAL A 472 N LEU A 449 SHEET 3 AA1 5 GLY A 525 MET A 529 1 O ILE A 526 N PHE A 473 SHEET 4 AA1 5 TYR A 422 LYS A 426 1 N PHE A 425 O VAL A 527 SHEET 5 AA1 5 ARG A 544 ASP A 547 1 O ILE A 546 N LEU A 424 SHEET 1 AA2 2 VAL A 508 LEU A 510 0 SHEET 2 AA2 2 ARG A 518 GLN A 520 -1 O GLN A 520 N VAL A 508 LINK SG CYS A 303 ZN ZN A 701 1555 1555 2.33 LINK SG CYS A 306 ZN ZN A 701 1555 1555 2.17 LINK NE2 HIS A 314 ZN ZN A 701 1555 1555 2.15 LINK ND1 HIS A 318 ZN ZN A 701 1555 1555 2.01 SITE 1 AC1 4 CYS A 303 CYS A 306 HIS A 314 HIS A 318 SITE 1 AC2 7 ILE A 581 TRP A 582 LYS A 601 ASP A 605 SITE 2 AC2 7 SER A 609 MET A 610 HOH A 906 SITE 1 AC3 11 TRP A 394 LYS A 419 ASP A 430 THR A 435 SITE 2 AC3 11 PRO A 550 LYS A 551 LEU A 554 ARG A 555 SITE 3 AC3 11 LEU A 558 LEU A 565 HOH A 921 CRYST1 110.710 110.710 67.750 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009033 0.005215 0.000000 0.00000 SCALE2 0.000000 0.010430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014760 0.00000