data_5JCV # _entry.id 5JCV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5JCV WWPDB D_1000220350 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id CSGID-IDP02804 _pdbx_database_related.db_name TargetTrack _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JCV _pdbx_database_status.recvd_initial_deposition_date 2016-04-15 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Zhou, M.' 2 'Grimshaw, S.' 3 'Anderson, W.F.' 4 'Joachimiak, A.' 5 'Center for Structural Genomics of Infectious Diseases (CSGID)' 6 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Sortase B from Listeria monocytogenes.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Osipiuk, J.' 1 ? primary 'Zhou, M.' 2 ? primary 'Grimshaw, S.' 3 ? primary 'Anderson, W.F.' 4 ? primary 'Joachimiak, A.' 5 ? primary 'Center for Structural Genomics of Infectious Diseases (CSGID)' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5JCV _cell.details ? _cell.formula_units_Z ? _cell.length_a 70.155 _cell.length_a_esd ? _cell.length_b 70.155 _cell.length_b_esd ? _cell.length_c 224.471 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lmo2181 protein' 21754.641 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNALRDLQKLNKD(MSE)VGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHN (MSE)KDGS(MSE)FADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQS VYTSNVKVSGKDRIITLSTCDTEKDYEKGR(MSE)VIQGKL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNALRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSM FADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRI ITLSTCDTEKDYEKGRMVIQGKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier CSGID-IDP02804 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 LEU n 1 5 ARG n 1 6 ASP n 1 7 LEU n 1 8 GLN n 1 9 LYS n 1 10 LEU n 1 11 ASN n 1 12 LYS n 1 13 ASP n 1 14 MSE n 1 15 VAL n 1 16 GLY n 1 17 TRP n 1 18 LEU n 1 19 THR n 1 20 ILE n 1 21 ILE n 1 22 ASP n 1 23 THR n 1 24 GLU n 1 25 ILE n 1 26 ASP n 1 27 TYR n 1 28 PRO n 1 29 ILE n 1 30 LEU n 1 31 GLN n 1 32 SER n 1 33 LYS n 1 34 ASP n 1 35 ASN n 1 36 ASP n 1 37 TYR n 1 38 TYR n 1 39 LEU n 1 40 HIS n 1 41 HIS n 1 42 ASN n 1 43 TYR n 1 44 LYS n 1 45 ASN n 1 46 GLU n 1 47 LYS n 1 48 ALA n 1 49 ARG n 1 50 ALA n 1 51 GLY n 1 52 SER n 1 53 ILE n 1 54 PHE n 1 55 LYS n 1 56 ASP n 1 57 TYR n 1 58 ARG n 1 59 ASN n 1 60 THR n 1 61 ASN n 1 62 GLU n 1 63 PHE n 1 64 LEU n 1 65 ASP n 1 66 LYS n 1 67 ASN n 1 68 THR n 1 69 ILE n 1 70 ILE n 1 71 TYR n 1 72 GLY n 1 73 HIS n 1 74 ASN n 1 75 MSE n 1 76 LYS n 1 77 ASP n 1 78 GLY n 1 79 SER n 1 80 MSE n 1 81 PHE n 1 82 ALA n 1 83 ASP n 1 84 LEU n 1 85 ARG n 1 86 LYS n 1 87 TYR n 1 88 LEU n 1 89 ASP n 1 90 LYS n 1 91 ASP n 1 92 PHE n 1 93 LEU n 1 94 VAL n 1 95 ALA n 1 96 HIS n 1 97 PRO n 1 98 THR n 1 99 PHE n 1 100 SER n 1 101 TYR n 1 102 GLU n 1 103 SER n 1 104 GLY n 1 105 LEU n 1 106 THR n 1 107 ASN n 1 108 TYR n 1 109 GLU n 1 110 VAL n 1 111 GLU n 1 112 ILE n 1 113 PHE n 1 114 ALA n 1 115 VAL n 1 116 TYR n 1 117 GLU n 1 118 THR n 1 119 THR n 1 120 THR n 1 121 ASP n 1 122 PHE n 1 123 TYR n 1 124 TYR n 1 125 ILE n 1 126 GLU n 1 127 THR n 1 128 GLU n 1 129 PHE n 1 130 PRO n 1 131 GLU n 1 132 THR n 1 133 THR n 1 134 ASP n 1 135 PHE n 1 136 GLU n 1 137 ASP n 1 138 TYR n 1 139 LEU n 1 140 GLN n 1 141 LYS n 1 142 VAL n 1 143 LYS n 1 144 GLN n 1 145 GLN n 1 146 SER n 1 147 VAL n 1 148 TYR n 1 149 THR n 1 150 SER n 1 151 ASN n 1 152 VAL n 1 153 LYS n 1 154 VAL n 1 155 SER n 1 156 GLY n 1 157 LYS n 1 158 ASP n 1 159 ARG n 1 160 ILE n 1 161 ILE n 1 162 THR n 1 163 LEU n 1 164 SER n 1 165 THR n 1 166 CYS n 1 167 ASP n 1 168 THR n 1 169 GLU n 1 170 LYS n 1 171 ASP n 1 172 TYR n 1 173 GLU n 1 174 LYS n 1 175 GLY n 1 176 ARG n 1 177 MSE n 1 178 VAL n 1 179 ILE n 1 180 GLN n 1 181 GLY n 1 182 LYS n 1 183 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 183 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lmo2181 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC BAA-679 / EGD-e' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 169963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG53 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8Y588_LISMO _struct_ref.pdbx_db_accession Q8Y588 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFAD LRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITL STCDTEKDYEKGRMVIQGKL ; _struct_ref.pdbx_align_begin 64 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5JCV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8Y588 _struct_ref_seq.db_align_beg 64 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 243 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 64 _struct_ref_seq.pdbx_auth_seq_align_end 243 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5JCV SER A 1 ? UNP Q8Y588 ? ? 'expression tag' 61 1 1 5JCV ASN A 2 ? UNP Q8Y588 ? ? 'expression tag' 62 2 1 5JCV ALA A 3 ? UNP Q8Y588 ? ? 'expression tag' 63 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JCV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M lithium sulfate, 2 M ammonium sulfate, 0.1 M Tris-Cl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JCV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.23 _reflns.d_resolution_low 33.6 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14055 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.9 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 11.1 _reflns.pdbx_netI_over_sigmaI 36.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.23 _reflns_shell.d_res_low 2.27 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.88 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.890 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.2100 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.2100 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -0.4100 _refine.B_iso_max 142.570 _refine.B_iso_mean 65.8910 _refine.B_iso_min 37.770 _refine.correlation_coeff_Fo_to_Fc 0.9550 _refine.correlation_coeff_Fo_to_Fc_free 0.9310 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5JCV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.2300 _refine.ls_d_res_low 33.6000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13369 _refine.ls_number_reflns_R_free 683 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.1800 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2087 _refine.ls_R_factor_R_free 0.2487 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2066 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2110 _refine.pdbx_overall_ESU_R_Free 0.1890 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 13.4230 _refine.overall_SU_ML 0.1560 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.2300 _refine_hist.d_res_low 33.6000 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1480 _refine_hist.pdbx_number_residues_total 175 _refine_hist.pdbx_B_iso_mean_ligand 94.59 _refine_hist.pdbx_B_iso_mean_solvent 52.11 _refine_hist.pdbx_number_atoms_protein 1452 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 0.020 1498 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1383 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.560 1.964 2026 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.795 3.000 3193 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.014 5.000 177 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 33.775 24.937 79 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 16.210 15.000 260 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 10.264 15.000 6 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.099 0.200 221 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 1683 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 351 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 3.178 4.309 702 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.177 4.307 701 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.645 6.439 875 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.2330 _refine_ls_shell.d_res_low 2.2900 _refine_ls_shell.number_reflns_all 1003 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_R_work 958 _refine_ls_shell.percent_reflns_obs 98.7200 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2980 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2850 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5JCV _struct.title 'Sortase B from Listeria monocytogenes.' _struct.pdbx_descriptor 'Lmo2181 protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JCV _struct_keywords.text 'sortase, structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 3 ? ASP A 13 ? ALA A 63 ASP A 73 1 ? 11 HELX_P HELX_P2 AA2 ASP A 36 ? HIS A 41 ? ASP A 96 HIS A 101 1 ? 6 HELX_P HELX_P3 AA3 PHE A 81 ? LEU A 88 ? PHE A 141 LEU A 148 5 ? 8 HELX_P HELX_P4 AA4 ASP A 89 ? HIS A 96 ? ASP A 149 HIS A 156 1 ? 8 HELX_P HELX_P5 AA5 PHE A 122 ? GLU A 126 ? PHE A 182 GLU A 186 5 ? 5 HELX_P HELX_P6 AA6 GLU A 131 ? SER A 146 ? GLU A 191 SER A 206 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASP 13 C ? ? ? 1_555 A MSE 14 N ? ? A ASP 73 A MSE 74 1_555 ? ? ? ? ? ? ? 1.345 ? covale2 covale both ? A MSE 14 C ? ? ? 1_555 A VAL 15 N ? ? A MSE 74 A VAL 75 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale both ? A ASN 74 C ? ? ? 1_555 A MSE 75 N ? ? A ASN 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A MSE 75 C ? ? ? 1_555 A LYS 76 N ? ? A MSE 135 A LYS 136 1_555 ? ? ? ? ? ? ? 1.319 ? covale5 covale both ? A SER 79 C ? ? ? 1_555 A MSE 80 N ? ? A SER 139 A MSE 140 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? A MSE 80 C ? ? ? 1_555 A PHE 81 N ? ? A MSE 140 A PHE 141 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale both ? A ARG 176 C ? ? ? 1_555 A MSE 177 N ? ? A ARG 236 A MSE 237 1_555 ? ? ? ? ? ? ? 1.323 ? covale8 covale both ? A MSE 177 C ? ? ? 1_555 A VAL 178 N ? ? A MSE 237 A VAL 238 1_555 ? ? ? ? ? ? ? 1.320 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MSE A 14 ? THR A 19 ? MSE A 74 THR A 79 AA1 2 ASP A 26 ? LEU A 30 ? ASP A 86 LEU A 90 AA1 3 ILE A 53 ? LYS A 55 ? ILE A 113 LYS A 115 AA1 4 ASN A 67 ? GLY A 72 ? ASN A 127 GLY A 132 AA1 5 ILE A 160 ? THR A 165 ? ILE A 220 THR A 225 AA1 6 ARG A 176 ? LYS A 182 ? ARG A 236 LYS A 242 AA1 7 ASN A 107 ? THR A 118 ? ASN A 167 THR A 178 AA1 8 THR A 98 ? GLU A 102 ? THR A 158 GLU A 162 AA1 9 MSE A 14 ? THR A 19 ? MSE A 74 THR A 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 15 ? N VAL A 75 O ILE A 29 ? O ILE A 89 AA1 2 3 N LEU A 30 ? N LEU A 90 O ILE A 53 ? O ILE A 113 AA1 3 4 N PHE A 54 ? N PHE A 114 O TYR A 71 ? O TYR A 131 AA1 4 5 N THR A 68 ? N THR A 128 O THR A 162 ? O THR A 222 AA1 5 6 N LEU A 163 ? N LEU A 223 O ILE A 179 ? O ILE A 239 AA1 6 7 O LYS A 182 ? O LYS A 242 N GLU A 111 ? N GLU A 171 AA1 7 8 O VAL A 110 ? O VAL A 170 N PHE A 99 ? N PHE A 159 AA1 8 9 O GLU A 102 ? O GLU A 162 N TRP A 17 ? N TRP A 77 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 501 ? 3 'binding site for residue SO4 A 501' AC2 Software A CL 502 ? 3 'binding site for residue CL A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ALA A 48 ? ALA A 108 . ? 1_555 ? 2 AC1 3 ARG A 49 ? ARG A 109 . ? 1_555 ? 3 AC1 3 HOH D . ? HOH A 611 . ? 1_555 ? 4 AC2 3 THR A 118 ? THR A 178 . ? 1_555 ? 5 AC2 3 THR A 119 ? THR A 179 . ? 1_555 ? 6 AC2 3 THR A 120 ? THR A 180 . ? 1_555 ? # _atom_sites.entry_id 5JCV _atom_sites.fract_transf_matrix[1][1] 0.014254 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014254 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004455 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 61 ? ? ? A . n A 1 2 ASN 2 62 ? ? ? A . n A 1 3 ALA 3 63 63 ALA ALA A . n A 1 4 LEU 4 64 64 LEU LEU A . n A 1 5 ARG 5 65 65 ARG ARG A . n A 1 6 ASP 6 66 66 ASP ASP A . n A 1 7 LEU 7 67 67 LEU LEU A . n A 1 8 GLN 8 68 68 GLN GLN A . n A 1 9 LYS 9 69 69 LYS LYS A . n A 1 10 LEU 10 70 70 LEU LEU A . n A 1 11 ASN 11 71 71 ASN ASN A . n A 1 12 LYS 12 72 72 LYS LYS A . n A 1 13 ASP 13 73 73 ASP ASP A . n A 1 14 MSE 14 74 74 MSE MSE A . n A 1 15 VAL 15 75 75 VAL VAL A . n A 1 16 GLY 16 76 76 GLY GLY A . n A 1 17 TRP 17 77 77 TRP TRP A . n A 1 18 LEU 18 78 78 LEU LEU A . n A 1 19 THR 19 79 79 THR THR A . n A 1 20 ILE 20 80 80 ILE ILE A . n A 1 21 ILE 21 81 81 ILE ILE A . n A 1 22 ASP 22 82 82 ASP ASP A . n A 1 23 THR 23 83 83 THR THR A . n A 1 24 GLU 24 84 84 GLU GLU A . n A 1 25 ILE 25 85 85 ILE ILE A . n A 1 26 ASP 26 86 86 ASP ASP A . n A 1 27 TYR 27 87 87 TYR TYR A . n A 1 28 PRO 28 88 88 PRO PRO A . n A 1 29 ILE 29 89 89 ILE ILE A . n A 1 30 LEU 30 90 90 LEU LEU A . n A 1 31 GLN 31 91 91 GLN GLN A . n A 1 32 SER 32 92 92 SER SER A . n A 1 33 LYS 33 93 93 LYS LYS A . n A 1 34 ASP 34 94 94 ASP ASP A . n A 1 35 ASN 35 95 95 ASN ASN A . n A 1 36 ASP 36 96 96 ASP ASP A . n A 1 37 TYR 37 97 97 TYR TYR A . n A 1 38 TYR 38 98 98 TYR TYR A . n A 1 39 LEU 39 99 99 LEU LEU A . n A 1 40 HIS 40 100 100 HIS HIS A . n A 1 41 HIS 41 101 101 HIS HIS A . n A 1 42 ASN 42 102 102 ASN ASN A . n A 1 43 TYR 43 103 103 TYR TYR A . n A 1 44 LYS 44 104 104 LYS LYS A . n A 1 45 ASN 45 105 105 ASN ASN A . n A 1 46 GLU 46 106 106 GLU GLU A . n A 1 47 LYS 47 107 107 LYS LYS A . n A 1 48 ALA 48 108 108 ALA ALA A . n A 1 49 ARG 49 109 109 ARG ARG A . n A 1 50 ALA 50 110 110 ALA ALA A . n A 1 51 GLY 51 111 111 GLY GLY A . n A 1 52 SER 52 112 112 SER SER A . n A 1 53 ILE 53 113 113 ILE ILE A . n A 1 54 PHE 54 114 114 PHE PHE A . n A 1 55 LYS 55 115 115 LYS LYS A . n A 1 56 ASP 56 116 116 ASP ASP A . n A 1 57 TYR 57 117 117 TYR TYR A . n A 1 58 ARG 58 118 118 ARG ARG A . n A 1 59 ASN 59 119 119 ASN ASN A . n A 1 60 THR 60 120 120 THR THR A . n A 1 61 ASN 61 121 121 ASN ASN A . n A 1 62 GLU 62 122 122 GLU GLU A . n A 1 63 PHE 63 123 123 PHE PHE A . n A 1 64 LEU 64 124 124 LEU LEU A . n A 1 65 ASP 65 125 125 ASP ASP A . n A 1 66 LYS 66 126 126 LYS LYS A . n A 1 67 ASN 67 127 127 ASN ASN A . n A 1 68 THR 68 128 128 THR THR A . n A 1 69 ILE 69 129 129 ILE ILE A . n A 1 70 ILE 70 130 130 ILE ILE A . n A 1 71 TYR 71 131 131 TYR TYR A . n A 1 72 GLY 72 132 132 GLY GLY A . n A 1 73 HIS 73 133 133 HIS HIS A . n A 1 74 ASN 74 134 134 ASN ASN A . n A 1 75 MSE 75 135 135 MSE MSE A . n A 1 76 LYS 76 136 136 LYS LYS A . n A 1 77 ASP 77 137 137 ASP ASP A . n A 1 78 GLY 78 138 138 GLY GLY A . n A 1 79 SER 79 139 139 SER SER A . n A 1 80 MSE 80 140 140 MSE MSE A . n A 1 81 PHE 81 141 141 PHE PHE A . n A 1 82 ALA 82 142 142 ALA ALA A . n A 1 83 ASP 83 143 143 ASP ASP A . n A 1 84 LEU 84 144 144 LEU LEU A . n A 1 85 ARG 85 145 145 ARG ARG A . n A 1 86 LYS 86 146 146 LYS LYS A . n A 1 87 TYR 87 147 147 TYR TYR A . n A 1 88 LEU 88 148 148 LEU LEU A . n A 1 89 ASP 89 149 149 ASP ASP A . n A 1 90 LYS 90 150 150 LYS LYS A . n A 1 91 ASP 91 151 151 ASP ASP A . n A 1 92 PHE 92 152 152 PHE PHE A . n A 1 93 LEU 93 153 153 LEU LEU A . n A 1 94 VAL 94 154 154 VAL VAL A . n A 1 95 ALA 95 155 155 ALA ALA A . n A 1 96 HIS 96 156 156 HIS HIS A . n A 1 97 PRO 97 157 157 PRO PRO A . n A 1 98 THR 98 158 158 THR THR A . n A 1 99 PHE 99 159 159 PHE PHE A . n A 1 100 SER 100 160 160 SER SER A . n A 1 101 TYR 101 161 161 TYR TYR A . n A 1 102 GLU 102 162 162 GLU GLU A . n A 1 103 SER 103 163 163 SER SER A . n A 1 104 GLY 104 164 164 GLY GLY A . n A 1 105 LEU 105 165 165 LEU LEU A . n A 1 106 THR 106 166 166 THR THR A . n A 1 107 ASN 107 167 167 ASN ASN A . n A 1 108 TYR 108 168 168 TYR TYR A . n A 1 109 GLU 109 169 169 GLU GLU A . n A 1 110 VAL 110 170 170 VAL VAL A . n A 1 111 GLU 111 171 171 GLU GLU A . n A 1 112 ILE 112 172 172 ILE ILE A . n A 1 113 PHE 113 173 173 PHE PHE A . n A 1 114 ALA 114 174 174 ALA ALA A . n A 1 115 VAL 115 175 175 VAL VAL A . n A 1 116 TYR 116 176 176 TYR TYR A . n A 1 117 GLU 117 177 177 GLU GLU A . n A 1 118 THR 118 178 178 THR THR A . n A 1 119 THR 119 179 179 THR THR A . n A 1 120 THR 120 180 180 THR THR A . n A 1 121 ASP 121 181 181 ASP ASP A . n A 1 122 PHE 122 182 182 PHE PHE A . n A 1 123 TYR 123 183 183 TYR TYR A . n A 1 124 TYR 124 184 184 TYR TYR A . n A 1 125 ILE 125 185 185 ILE ILE A . n A 1 126 GLU 126 186 186 GLU GLU A . n A 1 127 THR 127 187 187 THR THR A . n A 1 128 GLU 128 188 188 GLU GLU A . n A 1 129 PHE 129 189 189 PHE PHE A . n A 1 130 PRO 130 190 190 PRO PRO A . n A 1 131 GLU 131 191 191 GLU GLU A . n A 1 132 THR 132 192 192 THR THR A . n A 1 133 THR 133 193 193 THR THR A . n A 1 134 ASP 134 194 194 ASP ASP A . n A 1 135 PHE 135 195 195 PHE PHE A . n A 1 136 GLU 136 196 196 GLU GLU A . n A 1 137 ASP 137 197 197 ASP ASP A . n A 1 138 TYR 138 198 198 TYR TYR A . n A 1 139 LEU 139 199 199 LEU LEU A . n A 1 140 GLN 140 200 200 GLN GLN A . n A 1 141 LYS 141 201 201 LYS LYS A . n A 1 142 VAL 142 202 202 VAL VAL A . n A 1 143 LYS 143 203 203 LYS LYS A . n A 1 144 GLN 144 204 204 GLN GLN A . n A 1 145 GLN 145 205 205 GLN GLN A . n A 1 146 SER 146 206 206 SER SER A . n A 1 147 VAL 147 207 207 VAL VAL A . n A 1 148 TYR 148 208 208 TYR TYR A . n A 1 149 THR 149 209 209 THR THR A . n A 1 150 SER 150 210 210 SER SER A . n A 1 151 ASN 151 211 211 ASN ASN A . n A 1 152 VAL 152 212 212 VAL VAL A . n A 1 153 LYS 153 213 213 LYS LYS A . n A 1 154 VAL 154 214 214 VAL VAL A . n A 1 155 SER 155 215 215 SER SER A . n A 1 156 GLY 156 216 216 GLY GLY A . n A 1 157 LYS 157 217 217 LYS LYS A . n A 1 158 ASP 158 218 218 ASP ASP A . n A 1 159 ARG 159 219 219 ARG ARG A . n A 1 160 ILE 160 220 220 ILE ILE A . n A 1 161 ILE 161 221 221 ILE ILE A . n A 1 162 THR 162 222 222 THR THR A . n A 1 163 LEU 163 223 223 LEU LEU A . n A 1 164 SER 164 224 224 SER SER A . n A 1 165 THR 165 225 225 THR THR A . n A 1 166 CYS 166 226 226 CYS CYS A . n A 1 167 ASP 167 227 227 ASP ASP A . n A 1 168 THR 168 228 ? ? ? A . n A 1 169 GLU 169 229 ? ? ? A . n A 1 170 LYS 170 230 ? ? ? A . n A 1 171 ASP 171 231 ? ? ? A . n A 1 172 TYR 172 232 ? ? ? A . n A 1 173 GLU 173 233 ? ? ? A . n A 1 174 LYS 174 234 234 LYS LYS A . n A 1 175 GLY 175 235 235 GLY GLY A . n A 1 176 ARG 176 236 236 ARG ARG A . n A 1 177 MSE 177 237 237 MSE MSE A . n A 1 178 VAL 178 238 238 VAL VAL A . n A 1 179 ILE 179 239 239 ILE ILE A . n A 1 180 GLN 180 240 240 GLN GLN A . n A 1 181 GLY 181 241 241 GLY GLY A . n A 1 182 LYS 182 242 242 LYS LYS A . n A 1 183 LEU 183 243 243 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 3 CL 1 502 502 CL CL A . D 4 HOH 1 601 11 HOH HOH A . D 4 HOH 2 602 6 HOH HOH A . D 4 HOH 3 603 4 HOH HOH A . D 4 HOH 4 604 20 HOH HOH A . D 4 HOH 5 605 8 HOH HOH A . D 4 HOH 6 606 7 HOH HOH A . D 4 HOH 7 607 2 HOH HOH A . D 4 HOH 8 608 12 HOH HOH A . D 4 HOH 9 609 3 HOH HOH A . D 4 HOH 10 610 13 HOH HOH A . D 4 HOH 11 611 9 HOH HOH A . D 4 HOH 12 612 5 HOH HOH A . D 4 HOH 13 613 19 HOH HOH A . D 4 HOH 14 614 1 HOH HOH A . D 4 HOH 15 615 14 HOH HOH A . D 4 HOH 16 616 15 HOH HOH A . D 4 HOH 17 617 17 HOH HOH A . D 4 HOH 18 618 10 HOH HOH A . D 4 HOH 19 619 18 HOH HOH A . D 4 HOH 20 620 21 HOH HOH A . D 4 HOH 21 621 22 HOH HOH A . D 4 HOH 22 622 16 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 74 ? MET 'modified residue' 2 A MSE 75 A MSE 135 ? MET 'modified residue' 3 A MSE 80 A MSE 140 ? MET 'modified residue' 4 A MSE 177 A MSE 237 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1860 ? 1 MORE -47 ? 1 'SSA (A^2)' 18260 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 35.0775000000 -1.0000000000 0.0000000000 0.0000000000 35.0775000000 0.0000000000 0.0000000000 -1.0000000000 112.2355000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-04-27 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2019-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' 4 3 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_struct_oper_list 3 2 'Structure model' software 4 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 2 'Structure model' '_software.name' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 17.2656 _pdbx_refine_tls.origin_y -1.8639 _pdbx_refine_tls.origin_z 67.2407 _pdbx_refine_tls.T[1][1] 0.0701 _pdbx_refine_tls.T[2][2] 0.4001 _pdbx_refine_tls.T[3][3] 0.0550 _pdbx_refine_tls.T[1][2] -0.0855 _pdbx_refine_tls.T[1][3] 0.0174 _pdbx_refine_tls.T[2][3] -0.0752 _pdbx_refine_tls.L[1][1] 0.5364 _pdbx_refine_tls.L[2][2] 1.3363 _pdbx_refine_tls.L[3][3] 2.3883 _pdbx_refine_tls.L[1][2] 0.0243 _pdbx_refine_tls.L[1][3] 0.2210 _pdbx_refine_tls.L[2][3] 0.4876 _pdbx_refine_tls.S[1][1] -0.1051 _pdbx_refine_tls.S[2][2] 0.2936 _pdbx_refine_tls.S[3][3] -0.1886 _pdbx_refine_tls.S[1][2] 0.2127 _pdbx_refine_tls.S[1][3] -0.0281 _pdbx_refine_tls.S[2][3] 0.1203 _pdbx_refine_tls.S[2][1] -0.0597 _pdbx_refine_tls.S[3][1] 0.0396 _pdbx_refine_tls.S[3][2] 0.5836 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 63 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 502 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? SBC-Collect ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0069 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9-1692 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 5 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 86 ? ? -156.01 78.43 2 1 SER A 92 ? ? -126.58 -164.95 3 1 MSE A 140 ? ? 61.36 -127.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 61 ? A SER 1 2 1 Y 1 A ASN 62 ? A ASN 2 3 1 Y 1 A THR 228 ? A THR 168 4 1 Y 1 A GLU 229 ? A GLU 169 5 1 Y 1 A LYS 230 ? A LYS 170 6 1 Y 1 A ASP 231 ? A ASP 171 7 1 Y 1 A TYR 232 ? A TYR 172 8 1 Y 1 A GLU 233 ? A GLU 173 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' HHSN272200700058C 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' HHSN272201200026C 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH #