data_5JEU # _entry.id 5JEU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5JEU pdb_00005jeu 10.2210/pdb5jeu/pdb WWPDB D_1000220439 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-14 2 'Structure model' 1 1 2016-09-21 3 'Structure model' 1 2 2016-09-28 4 'Structure model' 1 3 2016-11-09 5 'Structure model' 1 4 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.value' 6 5 'Structure model' '_struct_conn.pdbx_dist_value' 7 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JEU _pdbx_database_status.recvd_initial_deposition_date 2016-04-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Cardin, C.J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 9472 _citation.page_last 9482 _citation.title ;Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw753 _citation.pdbx_database_id_PubMed 27599841 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, J.P.' 1 ? primary 'Keane, P.M.' 2 ? primary 'Beer, H.' 3 ? primary 'Buchner, K.' 4 ? primary 'Winter, G.' 5 ? primary 'Sorensen, T.L.' 6 ? primary 'Cardin, D.J.' 7 ? primary 'Brazier, J.A.' 8 ? primary 'Cardin, C.J.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') ; 3045.992 1 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 3 non-polymer syn 'Delta-Ru(phen)2(dppz) complex' 743.779 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 'Delta-Ru(phen)2(dppz) complex' 0TN 4 'CHLORIDE ION' CL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0TN non-polymer . 'Delta-Ru(phen)2(dppz) complex' ? 'C42 H26 N8 Ru' 743.779 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA 1 101 1 BA BA A . C 3 0TN 1 102 2 0TN 0TN A . D 3 0TN 1 103 3 0TN 0TN A . E 4 CL 1 104 1 CL CL A . F 5 HOH 1 201 31 HOH HOH A . F 5 HOH 2 202 81 HOH HOH A . F 5 HOH 3 203 39 HOH HOH A . F 5 HOH 4 204 26 HOH HOH A . F 5 HOH 5 205 6 HOH HOH A . F 5 HOH 6 206 44 HOH HOH A . F 5 HOH 7 207 10 HOH HOH A . F 5 HOH 8 208 11 HOH HOH A . F 5 HOH 9 209 85 HOH HOH A . F 5 HOH 10 210 4 HOH HOH A . F 5 HOH 11 211 22 HOH HOH A . F 5 HOH 12 212 46 HOH HOH A . F 5 HOH 13 213 18 HOH HOH A . F 5 HOH 14 214 5 HOH HOH A . F 5 HOH 15 215 13 HOH HOH A . F 5 HOH 16 216 63 HOH HOH A . F 5 HOH 17 217 47 HOH HOH A . F 5 HOH 18 218 84 HOH HOH A . F 5 HOH 19 219 56 HOH HOH A . F 5 HOH 20 220 60 HOH HOH A . F 5 HOH 21 221 23 HOH HOH A . F 5 HOH 22 222 8 HOH HOH A . F 5 HOH 23 223 12 HOH HOH A . F 5 HOH 24 224 92 HOH HOH A . F 5 HOH 25 225 28 HOH HOH A . F 5 HOH 26 226 74 HOH HOH A . F 5 HOH 27 227 32 HOH HOH A . F 5 HOH 28 228 19 HOH HOH A . F 5 HOH 29 229 93 HOH HOH A . F 5 HOH 30 230 55 HOH HOH A . F 5 HOH 31 231 24 HOH HOH A . F 5 HOH 32 232 3 HOH HOH A . F 5 HOH 33 233 9 HOH HOH A . F 5 HOH 34 234 15 HOH HOH A . F 5 HOH 35 235 30 HOH HOH A . F 5 HOH 36 236 51 HOH HOH A . F 5 HOH 37 237 62 HOH HOH A . F 5 HOH 38 238 88 HOH HOH A . F 5 HOH 39 239 21 HOH HOH A . F 5 HOH 40 240 48 HOH HOH A . F 5 HOH 41 241 41 HOH HOH A . F 5 HOH 42 242 67 HOH HOH A . F 5 HOH 43 243 61 HOH HOH A . F 5 HOH 44 244 76 HOH HOH A . F 5 HOH 45 245 33 HOH HOH A . F 5 HOH 46 246 16 HOH HOH A . F 5 HOH 47 247 40 HOH HOH A . F 5 HOH 48 248 90 HOH HOH A . F 5 HOH 49 249 34 HOH HOH A . F 5 HOH 50 250 20 HOH HOH A . F 5 HOH 51 251 43 HOH HOH A . F 5 HOH 52 252 71 HOH HOH A . F 5 HOH 53 253 7 HOH HOH A . F 5 HOH 54 254 25 HOH HOH A . F 5 HOH 55 255 42 HOH HOH A . F 5 HOH 56 256 80 HOH HOH A . F 5 HOH 57 257 27 HOH HOH A . F 5 HOH 58 258 52 HOH HOH A . F 5 HOH 59 259 79 HOH HOH A . F 5 HOH 60 260 78 HOH HOH A . F 5 HOH 61 261 91 HOH HOH A . F 5 HOH 62 262 66 HOH HOH A . F 5 HOH 63 263 36 HOH HOH A . F 5 HOH 64 264 75 HOH HOH A . F 5 HOH 65 265 49 HOH HOH A . F 5 HOH 66 266 70 HOH HOH A . F 5 HOH 67 267 82 HOH HOH A . F 5 HOH 68 268 77 HOH HOH A . F 5 HOH 69 269 57 HOH HOH A . F 5 HOH 70 270 89 HOH HOH A . F 5 HOH 71 271 29 HOH HOH A . F 5 HOH 72 272 45 HOH HOH A . F 5 HOH 73 273 69 HOH HOH A . F 5 HOH 74 274 50 HOH HOH A . F 5 HOH 75 275 59 HOH HOH A . F 5 HOH 76 276 65 HOH HOH A . F 5 HOH 77 277 58 HOH HOH A . F 5 HOH 78 278 86 HOH HOH A . F 5 HOH 79 279 83 HOH HOH A . F 5 HOH 80 280 54 HOH HOH A . F 5 HOH 81 281 72 HOH HOH A . F 5 HOH 82 282 73 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5JEU _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.620 _cell.length_a_esd ? _cell.length_b 48.620 _cell.length_b_esd ? _cell.length_c 29.430 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JEU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1uL 4mM del-[Ru(phen)2(dppz)]2+, 1uL 2mM d(TCGGCGCCGA), 6uL of a solution containing 40mM Na-cacodylate pH 7, 12mM spermine, 80mM KCl, 20mM BaCl2, 10% (v/v) hexylene glycol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-12-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'dual Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8266 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JEU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.97 _reflns.d_resolution_low 25.18 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20581 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F -3 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.4 _reflns.pdbx_Rmerge_I_obs 0.027 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.97 _reflns_shell.d_res_low 1.00 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 97.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.857 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5JEU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.970 _refine.ls_d_res_low 25.177 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 38325 _refine.ls_number_reflns_R_free 1905 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.93 _refine.ls_percent_reflns_R_free 4.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1133 _refine.ls_R_factor_R_free 0.1267 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1125 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 13.45 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.08 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 104 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 388 _refine_hist.d_res_high 0.970 _refine_hist.d_res_low 25.177 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 ? 373 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.525 ? 595 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 28.643 ? 115 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.067 ? 42 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.028 ? 17 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.9701 0.9943 . . 145 2660 97.00 . . . 0.2769 . 0.2652 . . . . . . . . . . 'X-RAY DIFFRACTION' 0.9943 1.0212 . . 147 2628 98.00 . . . 0.2732 . 0.2405 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0212 1.0513 . . 133 2680 98.00 . . . 0.2342 . 0.2054 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0513 1.0852 . . 124 2649 98.00 . . . 0.1824 . 0.1815 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.0852 1.1240 . . 158 2592 98.00 . . . 0.1741 . 0.1524 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1240 1.1690 . . 125 2655 97.00 . . . 0.1245 . 0.1269 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1690 1.2222 . . 151 2587 97.00 . . . 0.1219 . 0.1134 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2222 1.2866 . . 126 2635 96.00 . . . 0.1069 . 0.0968 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2866 1.3672 . . 131 2538 95.00 . . . 0.0972 . 0.0872 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3672 1.4728 . . 140 2581 94.00 . . . 0.0851 . 0.0877 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4728 1.6210 . . 124 2566 94.00 . . . 0.0875 . 0.0816 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6210 1.8555 . . 142 2528 94.00 . . . 0.1145 . 0.0916 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8555 2.3374 . . 129 2571 94.00 . . . 0.1128 . 0.1071 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3374 25.1854 . . 130 2550 94.00 . . . 0.1371 . 0.1146 . . . . . . . . . . # _struct.entry_id 5JEU _struct.title 'del-[Ru(phen)2(dppz)]2+ bound to d(TCGGCGCCGA) with Ba2+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JEU _struct_keywords.text 'DNA, ruthenium, light-switch, semi-intercalation' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5JEU _struct_ref.pdbx_db_accession 5JEU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5JEU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5JEU _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 1 2 A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 B BA . BA ? ? A DG 4 A BA 101 1_555 ? ? ? ? ? ? ? 2.918 ? ? metalc2 metalc ? ? B BA . BA ? ? ? 1_555 F HOH . O ? ? A BA 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.768 ? ? metalc3 metalc ? ? B BA . BA ? ? ? 1_555 F HOH . O ? ? A BA 101 A HOH 222 1_555 ? ? ? ? ? ? ? 2.788 ? ? metalc4 metalc ? ? B BA . BA ? ? ? 1_555 F HOH . O ? ? A BA 101 A HOH 223 1_555 ? ? ? ? ? ? ? 2.880 ? ? metalc5 metalc ? ? B BA . BA ? ? ? 1_555 F HOH . O ? ? A BA 101 A HOH 233 1_555 ? ? ? ? ? ? ? 2.784 ? ? metalc6 metalc ? ? B BA . BA ? ? ? 1_555 F HOH . O ? ? A BA 101 A HOH 248 1_555 ? ? ? ? ? ? ? 2.741 ? ? metalc7 metalc ? ? B BA . BA ? ? ? 1_555 F HOH . O ? ? A BA 101 A HOH 252 1_555 ? ? ? ? ? ? ? 2.673 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 10 N1 ? ? A DG 3 A DA 10 7_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 10 N6 ? ? A DG 3 A DA 10 7_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 10 N1 ? ? ? 1_555 A DG 3 N2 ? ? A DA 10 A DG 3 7_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog28 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DG 3 N3 ? ? A DA 10 A DG 3 7_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 210 ? 1_555 72.4 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 222 ? 1_555 147.6 ? 3 O ? F HOH . ? A HOH 210 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 222 ? 1_555 80.4 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 125.9 ? 5 O ? F HOH . ? A HOH 210 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 139.4 ? 6 O ? F HOH . ? A HOH 222 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 223 ? 1_555 67.4 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 233 ? 1_555 64.5 ? 8 O ? F HOH . ? A HOH 210 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 233 ? 1_555 82.1 ? 9 O ? F HOH . ? A HOH 222 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 233 ? 1_555 129.1 ? 10 O ? F HOH . ? A HOH 223 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 233 ? 1_555 137.5 ? 11 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 248 ? 1_555 113.7 ? 12 O ? F HOH . ? A HOH 210 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 248 ? 1_555 144.6 ? 13 O ? F HOH . ? A HOH 222 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 248 ? 1_555 98.6 ? 14 O ? F HOH . ? A HOH 223 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 248 ? 1_555 67.5 ? 15 O ? F HOH . ? A HOH 233 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 248 ? 1_555 71.1 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 252 ? 1_555 131.0 ? 17 O ? F HOH . ? A HOH 210 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 252 ? 1_555 95.5 ? 18 O ? F HOH . ? A HOH 222 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 252 ? 1_555 67.8 ? 19 O ? F HOH . ? A HOH 223 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 252 ? 1_555 94.5 ? 20 O ? F HOH . ? A HOH 233 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 252 ? 1_555 66.9 ? 21 O ? F HOH . ? A HOH 248 ? 1_555 BA ? B BA . ? A BA 101 ? 1_555 O ? F HOH . ? A HOH 252 ? 1_555 53.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 101 ? 8 'binding site for residue BA A 101' AC2 Software A 0TN 102 ? 7 'binding site for residue 0TN A 102' AC3 Software A 0TN 103 ? 9 'binding site for residue 0TN A 103' AC4 Software A CL 104 ? 3 'binding site for residue CL A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 8 HOH F . ? HOH A 210 . ? 1_555 ? 4 AC1 8 HOH F . ? HOH A 222 . ? 1_555 ? 5 AC1 8 HOH F . ? HOH A 223 . ? 1_555 ? 6 AC1 8 HOH F . ? HOH A 233 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH A 248 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 252 . ? 1_555 ? 9 AC2 7 DT A 1 ? DT A 1 . ? 3_655 ? 10 AC2 7 DT A 1 ? DT A 1 . ? 2_675 ? 11 AC2 7 DC A 2 ? DC A 2 . ? 1_555 ? 12 AC2 7 DG A 3 ? DG A 3 . ? 4_464 ? 13 AC2 7 DG A 3 ? DG A 3 . ? 1_555 ? 14 AC2 7 DG A 9 ? DG A 9 . ? 7_555 ? 15 AC2 7 DA A 10 ? DA A 10 . ? 7_555 ? 16 AC3 9 DG A 3 ? DG A 3 . ? 1_555 ? 17 AC3 9 DG A 4 ? DG A 4 . ? 1_555 ? 18 AC3 9 DC A 7 ? DC A 7 . ? 2_665 ? 19 AC3 9 DC A 7 ? DC A 7 . ? 7_555 ? 20 AC3 9 DC A 8 ? DC A 8 . ? 2_665 ? 21 AC3 9 DC A 8 ? DC A 8 . ? 7_555 ? 22 AC3 9 DG A 9 ? DG A 9 . ? 7_555 ? 23 AC3 9 DA A 10 ? DA A 10 . ? 7_555 ? 24 AC3 9 HOH F . ? HOH A 235 . ? 1_555 ? 25 AC4 3 DG A 3 ? DG A 3 . ? 1_555 ? 26 AC4 3 DA A 10 ? DA A 10 . ? 7_555 ? 27 AC4 3 HOH F . ? HOH A 255 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 244 ? ? O A HOH 268 ? ? 2.17 2 1 O2 A DT 1 ? B O A HOH 201 ? ? 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 B _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DT _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 111.02 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.72 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 232 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 273 ? . 5.81 2 1 O ? A HOH 274 ? . 5.83 3 1 O ? A HOH 275 ? . 5.96 4 1 O ? A HOH 276 ? . 6.02 5 1 O ? A HOH 277 ? . 6.61 6 1 O ? A HOH 278 ? . 6.89 7 1 O ? A HOH 279 ? . 7.52 8 1 O ? A HOH 280 ? . 7.54 9 1 O ? A HOH 281 ? 9.37 . 10 1 O ? A HOH 282 ? 11.79 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0TN RU RU N N 1 0TN C1 C Y N 2 0TN N1 N Y N 3 0TN C2 C Y N 4 0TN N2 N Y N 5 0TN C3 C Y N 6 0TN N3 N Y N 7 0TN C4 C Y N 8 0TN N4 N Y N 9 0TN C5 C Y N 10 0TN N5 N Y N 11 0TN C6 C Y N 12 0TN C7 C Y N 13 0TN C8 C Y N 14 0TN N8 N Y N 15 0TN C9 C Y N 16 0TN N9 N Y N 17 0TN C10 C Y N 18 0TN C11 C Y N 19 0TN C12 C Y N 20 0TN N12 N Y N 21 0TN C13 C Y N 22 0TN C14 C Y N 23 0TN C15 C Y N 24 0TN C16 C Y N 25 0TN C17 C Y N 26 0TN C18 C Y N 27 0TN C19 C Y N 28 0TN C20 C Y N 29 0TN C21 C Y N 30 0TN C22 C Y N 31 0TN C23 C Y N 32 0TN C24 C Y N 33 0TN C25 C Y N 34 0TN C26 C Y N 35 0TN C27 C Y N 36 0TN C28 C Y N 37 0TN C29 C Y N 38 0TN C30 C Y N 39 0TN C31 C Y N 40 0TN C32 C Y N 41 0TN C33 C Y N 42 0TN C34 C Y N 43 0TN C35 C Y N 44 0TN C36 C Y N 45 0TN C37 C Y N 46 0TN C38 C Y N 47 0TN C41 C Y N 48 0TN C42 C Y N 49 0TN C43 C Y N 50 0TN C44 C Y N 51 0TN H1 H N N 52 0TN H2 H N N 53 0TN H3 H N N 54 0TN H4 H N N 55 0TN H5 H N N 56 0TN H6 H N N 57 0TN H7 H N N 58 0TN H8 H N N 59 0TN H9 H N N 60 0TN H10 H N N 61 0TN H11 H N N 62 0TN H12 H N N 63 0TN H13 H N N 64 0TN H14 H N N 65 0TN H15 H N N 66 0TN H16 H N N 67 0TN H17 H N N 68 0TN H18 H N N 69 0TN H19 H N N 70 0TN H20 H N N 71 0TN H21 H N N 72 0TN H22 H N N 73 0TN H23 H N N 74 0TN H24 H N N 75 0TN H25 H N N 76 0TN H26 H N N 77 BA BA BA N N 78 CL CL CL N N 79 DA OP3 O N N 80 DA P P N N 81 DA OP1 O N N 82 DA OP2 O N N 83 DA "O5'" O N N 84 DA "C5'" C N N 85 DA "C4'" C N R 86 DA "O4'" O N N 87 DA "C3'" C N S 88 DA "O3'" O N N 89 DA "C2'" C N N 90 DA "C1'" C N R 91 DA N9 N Y N 92 DA C8 C Y N 93 DA N7 N Y N 94 DA C5 C Y N 95 DA C6 C Y N 96 DA N6 N N N 97 DA N1 N Y N 98 DA C2 C Y N 99 DA N3 N Y N 100 DA C4 C Y N 101 DA HOP3 H N N 102 DA HOP2 H N N 103 DA "H5'" H N N 104 DA "H5''" H N N 105 DA "H4'" H N N 106 DA "H3'" H N N 107 DA "HO3'" H N N 108 DA "H2'" H N N 109 DA "H2''" H N N 110 DA "H1'" H N N 111 DA H8 H N N 112 DA H61 H N N 113 DA H62 H N N 114 DA H2 H N N 115 DC OP3 O N N 116 DC P P N N 117 DC OP1 O N N 118 DC OP2 O N N 119 DC "O5'" O N N 120 DC "C5'" C N N 121 DC "C4'" C N R 122 DC "O4'" O N N 123 DC "C3'" C N S 124 DC "O3'" O N N 125 DC "C2'" C N N 126 DC "C1'" C N R 127 DC N1 N N N 128 DC C2 C N N 129 DC O2 O N N 130 DC N3 N N N 131 DC C4 C N N 132 DC N4 N N N 133 DC C5 C N N 134 DC C6 C N N 135 DC HOP3 H N N 136 DC HOP2 H N N 137 DC "H5'" H N N 138 DC "H5''" H N N 139 DC "H4'" H N N 140 DC "H3'" H N N 141 DC "HO3'" H N N 142 DC "H2'" H N N 143 DC "H2''" H N N 144 DC "H1'" H N N 145 DC H41 H N N 146 DC H42 H N N 147 DC H5 H N N 148 DC H6 H N N 149 DG OP3 O N N 150 DG P P N N 151 DG OP1 O N N 152 DG OP2 O N N 153 DG "O5'" O N N 154 DG "C5'" C N N 155 DG "C4'" C N R 156 DG "O4'" O N N 157 DG "C3'" C N S 158 DG "O3'" O N N 159 DG "C2'" C N N 160 DG "C1'" C N R 161 DG N9 N Y N 162 DG C8 C Y N 163 DG N7 N Y N 164 DG C5 C Y N 165 DG C6 C N N 166 DG O6 O N N 167 DG N1 N N N 168 DG C2 C N N 169 DG N2 N N N 170 DG N3 N N N 171 DG C4 C Y N 172 DG HOP3 H N N 173 DG HOP2 H N N 174 DG "H5'" H N N 175 DG "H5''" H N N 176 DG "H4'" H N N 177 DG "H3'" H N N 178 DG "HO3'" H N N 179 DG "H2'" H N N 180 DG "H2''" H N N 181 DG "H1'" H N N 182 DG H8 H N N 183 DG H1 H N N 184 DG H21 H N N 185 DG H22 H N N 186 DT OP3 O N N 187 DT P P N N 188 DT OP1 O N N 189 DT OP2 O N N 190 DT "O5'" O N N 191 DT "C5'" C N N 192 DT "C4'" C N R 193 DT "O4'" O N N 194 DT "C3'" C N S 195 DT "O3'" O N N 196 DT "C2'" C N N 197 DT "C1'" C N R 198 DT N1 N N N 199 DT C2 C N N 200 DT O2 O N N 201 DT N3 N N N 202 DT C4 C N N 203 DT O4 O N N 204 DT C5 C N N 205 DT C7 C N N 206 DT C6 C N N 207 DT HOP3 H N N 208 DT HOP2 H N N 209 DT "H5'" H N N 210 DT "H5''" H N N 211 DT "H4'" H N N 212 DT "H3'" H N N 213 DT "HO3'" H N N 214 DT "H2'" H N N 215 DT "H2''" H N N 216 DT "H1'" H N N 217 DT H3 H N N 218 DT H71 H N N 219 DT H72 H N N 220 DT H73 H N N 221 DT H6 H N N 222 HOH O O N N 223 HOH H1 H N N 224 HOH H2 H N N 225 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0TN C18 C14 doub Y N 1 0TN C18 C17 sing Y N 2 0TN C14 C13 sing Y N 3 0TN C17 C16 doub Y N 4 0TN C13 N4 doub Y N 5 0TN C13 C15 sing Y N 6 0TN C44 C37 doub Y N 7 0TN C44 C35 sing Y N 8 0TN C34 C35 doub Y N 9 0TN C34 C33 sing Y N 10 0TN N4 C7 sing Y N 11 0TN C16 C15 sing Y N 12 0TN C37 C38 sing Y N 13 0TN C9 C11 doub Y N 14 0TN C9 C8 sing Y N 15 0TN C35 C36 sing Y N 16 0TN C33 C32 doub Y N 17 0TN C15 N3 doub Y N 18 0TN C11 C12 sing Y N 19 0TN C7 C8 doub Y N 20 0TN C7 C6 sing Y N 21 0TN C8 C10 sing Y N 22 0TN N3 C6 sing Y N 23 0TN C38 N12 doub Y N 24 0TN C36 N12 sing Y N 25 0TN C36 C29 doub Y N 26 0TN C32 C29 sing Y N 27 0TN C32 C43 sing Y N 28 0TN C12 N1 doub Y N 29 0TN C6 C5 doub Y N 30 0TN N12 RU sing N N 31 0TN C10 N1 sing Y N 32 0TN C10 C1 doub Y N 33 0TN C29 N9 sing Y N 34 0TN C43 C31 doub Y N 35 0TN N1 RU sing N N 36 0TN C5 C1 sing Y N 37 0TN C5 C4 sing Y N 38 0TN C1 N2 sing Y N 39 0TN N9 RU sing N N 40 0TN N9 C30 doub Y N 41 0TN C4 C3 doub Y N 42 0TN C31 C30 sing Y N 43 0TN RU N2 sing N N 44 0TN RU N5 sing N N 45 0TN RU N8 sing N N 46 0TN N2 C2 doub Y N 47 0TN C3 C2 sing Y N 48 0TN C20 N5 doub Y N 49 0TN C20 C21 sing Y N 50 0TN N5 C19 sing Y N 51 0TN N8 C28 doub Y N 52 0TN N8 C26 sing Y N 53 0TN C28 C27 sing Y N 54 0TN C21 C41 doub Y N 55 0TN C19 C26 doub Y N 56 0TN C19 C22 sing Y N 57 0TN C26 C25 sing Y N 58 0TN C27 C42 doub Y N 59 0TN C41 C22 sing Y N 60 0TN C22 C23 doub Y N 61 0TN C25 C42 sing Y N 62 0TN C25 C24 doub Y N 63 0TN C23 C24 sing Y N 64 0TN C2 H1 sing N N 65 0TN C3 H2 sing N N 66 0TN C4 H3 sing N N 67 0TN C9 H4 sing N N 68 0TN C11 H5 sing N N 69 0TN C12 H6 sing N N 70 0TN C14 H7 sing N N 71 0TN C16 H8 sing N N 72 0TN C17 H9 sing N N 73 0TN C18 H10 sing N N 74 0TN C20 H11 sing N N 75 0TN C21 H12 sing N N 76 0TN C23 H13 sing N N 77 0TN C24 H14 sing N N 78 0TN C27 H15 sing N N 79 0TN C28 H16 sing N N 80 0TN C30 H17 sing N N 81 0TN C31 H18 sing N N 82 0TN C33 H19 sing N N 83 0TN C34 H20 sing N N 84 0TN C37 H21 sing N N 85 0TN C38 H22 sing N N 86 0TN C41 H23 sing N N 87 0TN C42 H24 sing N N 88 0TN C43 H25 sing N N 89 0TN C44 H26 sing N N 90 DA OP3 P sing N N 91 DA OP3 HOP3 sing N N 92 DA P OP1 doub N N 93 DA P OP2 sing N N 94 DA P "O5'" sing N N 95 DA OP2 HOP2 sing N N 96 DA "O5'" "C5'" sing N N 97 DA "C5'" "C4'" sing N N 98 DA "C5'" "H5'" sing N N 99 DA "C5'" "H5''" sing N N 100 DA "C4'" "O4'" sing N N 101 DA "C4'" "C3'" sing N N 102 DA "C4'" "H4'" sing N N 103 DA "O4'" "C1'" sing N N 104 DA "C3'" "O3'" sing N N 105 DA "C3'" "C2'" sing N N 106 DA "C3'" "H3'" sing N N 107 DA "O3'" "HO3'" sing N N 108 DA "C2'" "C1'" sing N N 109 DA "C2'" "H2'" sing N N 110 DA "C2'" "H2''" sing N N 111 DA "C1'" N9 sing N N 112 DA "C1'" "H1'" sing N N 113 DA N9 C8 sing Y N 114 DA N9 C4 sing Y N 115 DA C8 N7 doub Y N 116 DA C8 H8 sing N N 117 DA N7 C5 sing Y N 118 DA C5 C6 sing Y N 119 DA C5 C4 doub Y N 120 DA C6 N6 sing N N 121 DA C6 N1 doub Y N 122 DA N6 H61 sing N N 123 DA N6 H62 sing N N 124 DA N1 C2 sing Y N 125 DA C2 N3 doub Y N 126 DA C2 H2 sing N N 127 DA N3 C4 sing Y N 128 DC OP3 P sing N N 129 DC OP3 HOP3 sing N N 130 DC P OP1 doub N N 131 DC P OP2 sing N N 132 DC P "O5'" sing N N 133 DC OP2 HOP2 sing N N 134 DC "O5'" "C5'" sing N N 135 DC "C5'" "C4'" sing N N 136 DC "C5'" "H5'" sing N N 137 DC "C5'" "H5''" sing N N 138 DC "C4'" "O4'" sing N N 139 DC "C4'" "C3'" sing N N 140 DC "C4'" "H4'" sing N N 141 DC "O4'" "C1'" sing N N 142 DC "C3'" "O3'" sing N N 143 DC "C3'" "C2'" sing N N 144 DC "C3'" "H3'" sing N N 145 DC "O3'" "HO3'" sing N N 146 DC "C2'" "C1'" sing N N 147 DC "C2'" "H2'" sing N N 148 DC "C2'" "H2''" sing N N 149 DC "C1'" N1 sing N N 150 DC "C1'" "H1'" sing N N 151 DC N1 C2 sing N N 152 DC N1 C6 sing N N 153 DC C2 O2 doub N N 154 DC C2 N3 sing N N 155 DC N3 C4 doub N N 156 DC C4 N4 sing N N 157 DC C4 C5 sing N N 158 DC N4 H41 sing N N 159 DC N4 H42 sing N N 160 DC C5 C6 doub N N 161 DC C5 H5 sing N N 162 DC C6 H6 sing N N 163 DG OP3 P sing N N 164 DG OP3 HOP3 sing N N 165 DG P OP1 doub N N 166 DG P OP2 sing N N 167 DG P "O5'" sing N N 168 DG OP2 HOP2 sing N N 169 DG "O5'" "C5'" sing N N 170 DG "C5'" "C4'" sing N N 171 DG "C5'" "H5'" sing N N 172 DG "C5'" "H5''" sing N N 173 DG "C4'" "O4'" sing N N 174 DG "C4'" "C3'" sing N N 175 DG "C4'" "H4'" sing N N 176 DG "O4'" "C1'" sing N N 177 DG "C3'" "O3'" sing N N 178 DG "C3'" "C2'" sing N N 179 DG "C3'" "H3'" sing N N 180 DG "O3'" "HO3'" sing N N 181 DG "C2'" "C1'" sing N N 182 DG "C2'" "H2'" sing N N 183 DG "C2'" "H2''" sing N N 184 DG "C1'" N9 sing N N 185 DG "C1'" "H1'" sing N N 186 DG N9 C8 sing Y N 187 DG N9 C4 sing Y N 188 DG C8 N7 doub Y N 189 DG C8 H8 sing N N 190 DG N7 C5 sing Y N 191 DG C5 C6 sing N N 192 DG C5 C4 doub Y N 193 DG C6 O6 doub N N 194 DG C6 N1 sing N N 195 DG N1 C2 sing N N 196 DG N1 H1 sing N N 197 DG C2 N2 sing N N 198 DG C2 N3 doub N N 199 DG N2 H21 sing N N 200 DG N2 H22 sing N N 201 DG N3 C4 sing N N 202 DT OP3 P sing N N 203 DT OP3 HOP3 sing N N 204 DT P OP1 doub N N 205 DT P OP2 sing N N 206 DT P "O5'" sing N N 207 DT OP2 HOP2 sing N N 208 DT "O5'" "C5'" sing N N 209 DT "C5'" "C4'" sing N N 210 DT "C5'" "H5'" sing N N 211 DT "C5'" "H5''" sing N N 212 DT "C4'" "O4'" sing N N 213 DT "C4'" "C3'" sing N N 214 DT "C4'" "H4'" sing N N 215 DT "O4'" "C1'" sing N N 216 DT "C3'" "O3'" sing N N 217 DT "C3'" "C2'" sing N N 218 DT "C3'" "H3'" sing N N 219 DT "O3'" "HO3'" sing N N 220 DT "C2'" "C1'" sing N N 221 DT "C2'" "H2'" sing N N 222 DT "C2'" "H2''" sing N N 223 DT "C1'" N1 sing N N 224 DT "C1'" "H1'" sing N N 225 DT N1 C2 sing N N 226 DT N1 C6 sing N N 227 DT C2 O2 doub N N 228 DT C2 N3 sing N N 229 DT N3 C4 sing N N 230 DT N3 H3 sing N N 231 DT C4 O4 doub N N 232 DT C4 C5 sing N N 233 DT C5 C7 sing N N 234 DT C5 C6 doub N N 235 DT C7 H71 sing N N 236 DT C7 H72 sing N N 237 DT C7 H73 sing N N 238 DT C6 H6 sing N N 239 HOH O H1 sing N N 240 HOH O H2 sing N N 241 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5JEU 'double helix' 5JEU 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 9 7_555 0.188 -0.180 0.317 -3.847 -10.345 -0.833 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 7_555 -0.195 -0.085 0.429 17.545 -6.033 -1.170 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 4 1_555 A DC 7 7_555 -0.290 -0.142 -0.163 -11.697 -1.220 -0.990 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DC 5 1_555 A DG 6 7_555 0.104 -0.078 0.226 -2.999 -5.423 -1.868 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 7_555 -0.104 -0.078 0.226 2.999 -5.423 -1.868 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 1 A DC 7 1_555 A DG 4 7_555 0.290 -0.142 -0.163 11.697 -1.220 -0.990 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DC 8 1_555 A DG 3 7_555 0.195 -0.085 0.429 -17.545 -6.033 -1.170 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 7_555 -0.188 -0.180 0.317 3.847 -10.345 -0.833 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 7_555 A DG 3 1_555 A DC 8 7_555 0.069 0.416 2.889 4.825 1.332 30.419 0.552 0.705 2.881 2.518 -9.117 30.819 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 7_555 A DG 4 1_555 A DC 7 7_555 -0.044 0.341 5.157 1.395 49.663 21.199 -5.053 0.201 2.409 68.303 -1.918 53.751 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 7_555 A DC 5 1_555 A DG 6 7_555 -0.878 -0.066 3.086 -3.735 2.939 33.027 -0.582 0.936 3.146 5.136 6.528 33.357 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DC 5 1_555 A DG 6 7_555 A DG 6 1_555 A DC 5 7_555 0.000 0.261 3.087 0.000 6.090 32.108 -0.540 0.000 3.083 10.887 0.000 32.666 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DG 6 1_555 A DC 5 7_555 A DC 7 1_555 A DG 4 7_555 0.878 -0.066 3.086 3.735 2.939 33.027 -0.582 -0.936 3.146 5.136 -6.528 33.357 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 7_555 A DC 8 1_555 A DG 3 7_555 0.044 0.341 5.157 -1.395 49.663 21.199 -5.053 -0.201 2.409 68.303 1.918 53.751 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 7_555 A DG 9 1_555 A DC 2 7_555 -0.069 0.416 2.889 -4.825 1.332 30.419 0.552 -0.705 2.881 2.518 9.117 30.819 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? # _atom_sites.entry_id 5JEU _atom_sites.fract_transf_matrix[1][1] 0.020568 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020568 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033979 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C CL H K N O P RU # loop_