data_5JG9 # _entry.id 5JG9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5JG9 WWPDB D_1000220536 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JG9 _pdbx_database_status.recvd_initial_deposition_date 2016-04-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rupert, P.B.' 1 'Johnsen, W.A.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 538 _citation.language ? _citation.page_first 329 _citation.page_last 335 _citation.title 'Accurate de novo design of hyperstable constrained peptides.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature19791 _citation.pdbx_database_id_PubMed 27626386 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bhardwaj, G.' 1 primary 'Mulligan, V.K.' 2 primary 'Bahl, C.D.' 3 primary 'Gilmore, J.M.' 4 primary 'Harvey, P.J.' 5 primary 'Cheneval, O.' 6 primary 'Buchko, G.W.' 7 primary 'Pulavarti, S.V.' 8 primary 'Kaas, Q.' 9 primary 'Eletsky, A.' 10 primary 'Huang, P.S.' 11 primary 'Johnsen, W.A.' 12 primary 'Greisen, P.J.' 13 primary 'Rocklin, G.J.' 14 primary 'Song, Y.' 15 primary 'Linsky, T.W.' 16 primary 'Watkins, A.' 17 primary 'Rettie, S.A.' 18 primary 'Xu, X.' 19 primary 'Carter, L.P.' 20 primary 'Bonneau, R.' 21 primary 'Olson, J.M.' 22 primary 'Coutsias, E.' 23 primary 'Correnti, C.E.' 24 primary 'Szyperski, T.' 25 primary 'Craik, D.J.' 26 primary 'Baker, D.' 27 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 105.09 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5JG9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 34.920 _cell.length_a_esd ? _cell.length_b 45.533 _cell.length_b_esd ? _cell.length_c 49.704 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'de novo design, hyper stable, disulfide-rich mini protein' 5843.565 3 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 68 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSEERRYKRCGQDEERVRRECKERGERQNCQYQIRKEGNCYVCEIRC _entity_poly.pdbx_seq_one_letter_code_can GSEERRYKRCGQDEERVRRECKERGERQNCQYQIRKEGNCYVCEIRC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLU n 1 4 GLU n 1 5 ARG n 1 6 ARG n 1 7 TYR n 1 8 LYS n 1 9 ARG n 1 10 CYS n 1 11 GLY n 1 12 GLN n 1 13 ASP n 1 14 GLU n 1 15 GLU n 1 16 ARG n 1 17 VAL n 1 18 ARG n 1 19 ARG n 1 20 GLU n 1 21 CYS n 1 22 LYS n 1 23 GLU n 1 24 ARG n 1 25 GLY n 1 26 GLU n 1 27 ARG n 1 28 GLN n 1 29 ASN n 1 30 CYS n 1 31 GLN n 1 32 TYR n 1 33 GLN n 1 34 ILE n 1 35 ARG n 1 36 LYS n 1 37 GLU n 1 38 GLY n 1 39 ASN n 1 40 CYS n 1 41 TYR n 1 42 VAL n 1 43 CYS n 1 44 GLU n 1 45 ILE n 1 46 ARG n 1 47 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 47 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5JG9 _struct_ref.pdbx_db_accession 5JG9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5JG9 A 1 ? 47 ? 5JG9 -1 ? 45 ? -1 45 2 1 5JG9 B 1 ? 47 ? 5JG9 -1 ? 45 ? -1 45 3 1 5JG9 C 1 ? 47 ? 5JG9 -1 ? 45 ? -1 45 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JG9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Peg, buffer 7' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-04-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JG9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.09 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8734 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] -0.61 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.40 _refine.aniso_B[2][2] 2.12 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -1.51 _refine.B_iso_max ? _refine.B_iso_mean 35.892 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.918 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5JG9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.09 _refine.ls_d_res_low 47.99 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8310 _refine.ls_number_reflns_R_free 412 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.59 _refine.ls_percent_reflns_R_free 4.7 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20306 _refine.ls_R_factor_R_free 0.25084 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20067 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.279 _refine.pdbx_overall_ESU_R_Free 0.214 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 11.042 _refine.overall_SU_ML 0.156 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5JG9 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1204 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 1279 _refine_hist.d_res_high 2.09 _refine_hist.d_res_low 47.99 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.023 0.019 1249 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.012 0.020 1162 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.199 1.960 1653 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.078 3.000 2657 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.531 5.000 143 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 29.923 21.889 90 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 15.015 15.000 268 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 20.045 15.000 32 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.135 0.200 145 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 0.020 1456 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 340 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.599 2.003 563 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.595 2.004 562 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.302 2.988 700 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.301 2.988 701 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.122 2.382 686 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.122 2.381 686 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.345 3.461 951 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.740 15.736 1357 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.738 15.753 1358 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_type 'X-RAY DIFFRACTION' 1 1 1 ? 0.18 0.05 ? ? A 4820 'interatomic distance' 'X-RAY DIFFRACTION' 2 1 2 ? 0.18 0.05 ? ? B 4820 'interatomic distance' 'X-RAY DIFFRACTION' 1 2 3 ? 0.18 0.05 ? ? A 4934 'interatomic distance' 'X-RAY DIFFRACTION' 2 2 4 ? 0.18 0.05 ? ? C 4934 'interatomic distance' 'X-RAY DIFFRACTION' 1 3 5 ? 0.18 0.05 ? ? B 4820 'interatomic distance' 'X-RAY DIFFRACTION' 2 3 6 ? 0.18 0.05 ? ? C 4820 'interatomic distance' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.093 _refine_ls_shell.d_res_low 2.147 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_R_work 499 _refine_ls_shell.percent_reflns_obs 80.84 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.215 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 1 A 2 2 C 2 1 B 3 2 C 3 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 0 A 44 0 0 ? ? ? ? ? ? ? ? 1 ? 2 B 0 B 44 0 0 ? ? ? ? ? ? ? ? 1 ? 1 A 0 A 44 0 0 ? ? ? ? ? ? ? ? 2 ? 2 C 0 C 44 0 0 ? ? ? ? ? ? ? ? 2 ? 1 B -1 B 45 0 0 ? ? ? ? ? ? ? ? 3 ? 2 C -1 C 45 0 0 ? ? ? ? ? ? ? ? 3 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 5JG9 _struct.title 'Crystal structure of the de novo mini protein gEHEE_06' _struct.pdbx_descriptor 'de novo design, hyper stable, disulfide-rich mini protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JG9 _struct_keywords.text 'de novo design of hyper stable, disulfide-rich, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 13 ? GLN A 28 ? ASP A 11 GLN A 26 1 ? 16 HELX_P HELX_P2 AA2 ASP B 13 ? GLN B 28 ? ASP B 11 GLN B 26 1 ? 16 HELX_P HELX_P3 AA3 ASP C 13 ? ASN C 29 ? ASP C 11 ASN C 27 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 8 A CYS 38 1_555 ? ? ? ? ? ? ? 2.005 ? disulf2 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 19 A CYS 41 1_555 ? ? ? ? ? ? ? 2.076 ? disulf3 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 47 SG ? ? A CYS 28 A CYS 45 1_555 ? ? ? ? ? ? ? 1.989 ? disulf4 disulf ? ? B CYS 10 SG ? ? ? 1_555 B CYS 40 SG ? ? B CYS 8 B CYS 38 1_555 ? ? ? ? ? ? ? 2.021 ? disulf5 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 43 SG ? ? B CYS 19 B CYS 41 1_555 ? ? ? ? ? ? ? 2.067 ? disulf6 disulf ? ? B CYS 30 SG ? ? ? 1_555 B CYS 47 SG ? ? B CYS 28 B CYS 45 1_555 ? ? ? ? ? ? ? 1.975 ? disulf7 disulf ? ? C CYS 10 SG ? ? ? 1_555 C CYS 40 SG ? ? C CYS 8 C CYS 38 1_555 ? ? ? ? ? ? ? 2.037 ? disulf8 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 43 SG ? ? C CYS 19 C CYS 41 1_555 ? ? ? ? ? ? ? 2.063 ? disulf9 disulf ? ? C CYS 30 SG ? ? ? 1_555 C CYS 47 SG ? ? C CYS 28 C CYS 45 1_555 ? ? ? ? ? ? ? 1.988 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN B 31 ? GLU B 37 ? GLN B 29 GLU B 35 AA1 2 CYS B 40 ? CYS B 47 ? CYS B 38 CYS B 45 AA1 3 SER B 2 ? LYS B 8 ? SER B 0 LYS B 6 AA1 4 GLU A 3 ? LYS A 8 ? GLU A 1 LYS A 6 AA1 5 CYS A 40 ? ARG A 46 ? CYS A 38 ARG A 44 AA1 6 GLN A 31 ? GLU A 37 ? GLN A 29 GLU A 35 AA1 7 GLU C 4 ? LYS C 8 ? GLU C 2 LYS C 6 AA1 8 CYS C 40 ? ARG C 46 ? CYS C 38 ARG C 44 AA1 9 GLN C 31 ? GLU C 37 ? GLN C 29 GLU C 35 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN B 33 ? N GLN B 31 O GLU B 44 ? O GLU B 42 AA1 2 3 O ILE B 45 ? O ILE B 43 N ARG B 5 ? N ARG B 3 AA1 3 4 O ARG B 6 ? O ARG B 4 N GLU A 4 ? N GLU A 2 AA1 4 5 N ARG A 5 ? N ARG A 3 O ILE A 45 ? O ILE A 43 AA1 5 6 O GLU A 44 ? O GLU A 42 N GLN A 33 ? N GLN A 31 AA1 6 7 N LYS A 36 ? N LYS A 34 O ARG C 6 ? O ARG C 4 AA1 7 8 N ARG C 5 ? N ARG C 3 O ILE C 45 ? O ILE C 43 AA1 8 9 O GLU C 44 ? O GLU C 42 N GLN C 33 ? N GLN C 31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CL 101 ? 3 'binding site for residue CL B 101' AC2 Software C GOL 101 ? 5 'binding site for residue GOL C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ARG B 9 ? ARG B 7 . ? 1_555 ? 2 AC1 3 GLY B 11 ? GLY B 9 . ? 1_555 ? 3 AC1 3 GLN B 12 ? GLN B 10 . ? 1_555 ? 4 AC2 5 GLY A 38 ? GLY A 36 . ? 1_555 ? 5 AC2 5 TYR C 7 ? TYR C 5 . ? 1_555 ? 6 AC2 5 LYS C 8 ? LYS C 6 . ? 1_555 ? 7 AC2 5 ARG C 9 ? ARG C 7 . ? 1_555 ? 8 AC2 5 HOH H . ? HOH C 206 . ? 1_555 ? # _atom_sites.entry_id 5JG9 _atom_sites.fract_transf_matrix[1][1] 0.028637 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007723 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021962 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020838 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 0 SER SER A . n A 1 3 GLU 3 1 1 GLU GLU A . n A 1 4 GLU 4 2 2 GLU GLU A . n A 1 5 ARG 5 3 3 ARG ARG A . n A 1 6 ARG 6 4 4 ARG ARG A . n A 1 7 TYR 7 5 5 TYR TYR A . n A 1 8 LYS 8 6 6 LYS LYS A . n A 1 9 ARG 9 7 7 ARG ARG A . n A 1 10 CYS 10 8 8 CYS CYS A . n A 1 11 GLY 11 9 9 GLY GLY A . n A 1 12 GLN 12 10 10 GLN GLN A . n A 1 13 ASP 13 11 11 ASP ASP A . n A 1 14 GLU 14 12 12 GLU GLU A . n A 1 15 GLU 15 13 13 GLU GLU A . n A 1 16 ARG 16 14 14 ARG ARG A . n A 1 17 VAL 17 15 15 VAL VAL A . n A 1 18 ARG 18 16 16 ARG ARG A . n A 1 19 ARG 19 17 17 ARG ARG A . n A 1 20 GLU 20 18 18 GLU GLU A . n A 1 21 CYS 21 19 19 CYS CYS A . n A 1 22 LYS 22 20 20 LYS LYS A . n A 1 23 GLU 23 21 21 GLU GLU A . n A 1 24 ARG 24 22 22 ARG ARG A . n A 1 25 GLY 25 23 23 GLY GLY A . n A 1 26 GLU 26 24 24 GLU GLU A . n A 1 27 ARG 27 25 25 ARG ARG A . n A 1 28 GLN 28 26 26 GLN GLN A . n A 1 29 ASN 29 27 27 ASN ASN A . n A 1 30 CYS 30 28 28 CYS CYS A . n A 1 31 GLN 31 29 29 GLN GLN A . n A 1 32 TYR 32 30 30 TYR TYR A . n A 1 33 GLN 33 31 31 GLN GLN A . n A 1 34 ILE 34 32 32 ILE ILE A . n A 1 35 ARG 35 33 33 ARG ARG A . n A 1 36 LYS 36 34 34 LYS LYS A . n A 1 37 GLU 37 35 35 GLU GLU A . n A 1 38 GLY 38 36 36 GLY GLY A . n A 1 39 ASN 39 37 37 ASN ASN A . n A 1 40 CYS 40 38 38 CYS CYS A . n A 1 41 TYR 41 39 39 TYR TYR A . n A 1 42 VAL 42 40 40 VAL VAL A . n A 1 43 CYS 43 41 41 CYS CYS A . n A 1 44 GLU 44 42 42 GLU GLU A . n A 1 45 ILE 45 43 43 ILE ILE A . n A 1 46 ARG 46 44 44 ARG ARG A . n A 1 47 CYS 47 45 45 CYS CYS A . n B 1 1 GLY 1 -1 -1 GLY GLY B . n B 1 2 SER 2 0 0 SER SER B . n B 1 3 GLU 3 1 1 GLU GLU B . n B 1 4 GLU 4 2 2 GLU GLU B . n B 1 5 ARG 5 3 3 ARG ARG B . n B 1 6 ARG 6 4 4 ARG ARG B . n B 1 7 TYR 7 5 5 TYR TYR B . n B 1 8 LYS 8 6 6 LYS LYS B . n B 1 9 ARG 9 7 7 ARG ARG B . n B 1 10 CYS 10 8 8 CYS CYS B . n B 1 11 GLY 11 9 9 GLY GLY B . n B 1 12 GLN 12 10 10 GLN GLN B . n B 1 13 ASP 13 11 11 ASP ASP B . n B 1 14 GLU 14 12 12 GLU GLU B . n B 1 15 GLU 15 13 13 GLU GLU B . n B 1 16 ARG 16 14 14 ARG ARG B . n B 1 17 VAL 17 15 15 VAL VAL B . n B 1 18 ARG 18 16 16 ARG ARG B . n B 1 19 ARG 19 17 17 ARG ARG B . n B 1 20 GLU 20 18 18 GLU GLU B . n B 1 21 CYS 21 19 19 CYS CYS B . n B 1 22 LYS 22 20 20 LYS LYS B . n B 1 23 GLU 23 21 21 GLU GLU B . n B 1 24 ARG 24 22 22 ARG ARG B . n B 1 25 GLY 25 23 23 GLY GLY B . n B 1 26 GLU 26 24 24 GLU GLU B . n B 1 27 ARG 27 25 25 ARG ARG B . n B 1 28 GLN 28 26 26 GLN GLN B . n B 1 29 ASN 29 27 27 ASN ASN B . n B 1 30 CYS 30 28 28 CYS CYS B . n B 1 31 GLN 31 29 29 GLN GLN B . n B 1 32 TYR 32 30 30 TYR TYR B . n B 1 33 GLN 33 31 31 GLN GLN B . n B 1 34 ILE 34 32 32 ILE ILE B . n B 1 35 ARG 35 33 33 ARG ARG B . n B 1 36 LYS 36 34 34 LYS LYS B . n B 1 37 GLU 37 35 35 GLU GLU B . n B 1 38 GLY 38 36 36 GLY GLY B . n B 1 39 ASN 39 37 37 ASN ASN B . n B 1 40 CYS 40 38 38 CYS CYS B . n B 1 41 TYR 41 39 39 TYR TYR B . n B 1 42 VAL 42 40 40 VAL VAL B . n B 1 43 CYS 43 41 41 CYS CYS B . n B 1 44 GLU 44 42 42 GLU GLU B . n B 1 45 ILE 45 43 43 ILE ILE B . n B 1 46 ARG 46 44 44 ARG ARG B . n B 1 47 CYS 47 45 45 CYS CYS B . n C 1 1 GLY 1 -1 -1 GLY GLY C . n C 1 2 SER 2 0 0 SER SER C . n C 1 3 GLU 3 1 1 GLU GLU C . n C 1 4 GLU 4 2 2 GLU GLU C . n C 1 5 ARG 5 3 3 ARG ARG C . n C 1 6 ARG 6 4 4 ARG ARG C . n C 1 7 TYR 7 5 5 TYR TYR C . n C 1 8 LYS 8 6 6 LYS LYS C . n C 1 9 ARG 9 7 7 ARG ARG C . n C 1 10 CYS 10 8 8 CYS CYS C . n C 1 11 GLY 11 9 9 GLY GLY C . n C 1 12 GLN 12 10 10 GLN GLN C . n C 1 13 ASP 13 11 11 ASP ASP C . n C 1 14 GLU 14 12 12 GLU GLU C . n C 1 15 GLU 15 13 13 GLU GLU C . n C 1 16 ARG 16 14 14 ARG ARG C . n C 1 17 VAL 17 15 15 VAL VAL C . n C 1 18 ARG 18 16 16 ARG ARG C . n C 1 19 ARG 19 17 17 ARG ARG C . n C 1 20 GLU 20 18 18 GLU GLU C . n C 1 21 CYS 21 19 19 CYS CYS C . n C 1 22 LYS 22 20 20 LYS LYS C . n C 1 23 GLU 23 21 21 GLU GLU C . n C 1 24 ARG 24 22 22 ARG ARG C . n C 1 25 GLY 25 23 23 GLY GLY C . n C 1 26 GLU 26 24 24 GLU GLU C . n C 1 27 ARG 27 25 25 ARG ARG C . n C 1 28 GLN 28 26 26 GLN GLN C . n C 1 29 ASN 29 27 27 ASN ASN C . n C 1 30 CYS 30 28 28 CYS CYS C . n C 1 31 GLN 31 29 29 GLN GLN C . n C 1 32 TYR 32 30 30 TYR TYR C . n C 1 33 GLN 33 31 31 GLN GLN C . n C 1 34 ILE 34 32 32 ILE ILE C . n C 1 35 ARG 35 33 33 ARG ARG C . n C 1 36 LYS 36 34 34 LYS LYS C . n C 1 37 GLU 37 35 35 GLU GLU C . n C 1 38 GLY 38 36 36 GLY GLY C . n C 1 39 ASN 39 37 37 ASN ASN C . n C 1 40 CYS 40 38 38 CYS CYS C . n C 1 41 TYR 41 39 39 TYR TYR C . n C 1 42 VAL 42 40 40 VAL VAL C . n C 1 43 CYS 43 41 41 CYS CYS C . n C 1 44 GLU 44 42 42 GLU GLU C . n C 1 45 ILE 45 43 43 ILE ILE C . n C 1 46 ARG 46 44 44 ARG ARG C . n C 1 47 CYS 47 45 45 CYS CYS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL 1 101 1 CL CL B . E 3 GOL 1 101 1 GOL GOL C . F 4 HOH 1 101 66 HOH HOH A . F 4 HOH 2 102 30 HOH HOH A . F 4 HOH 3 103 72 HOH HOH A . F 4 HOH 4 104 31 HOH HOH A . F 4 HOH 5 105 16 HOH HOH A . F 4 HOH 6 106 36 HOH HOH A . F 4 HOH 7 107 3 HOH HOH A . F 4 HOH 8 108 14 HOH HOH A . F 4 HOH 9 109 70 HOH HOH A . F 4 HOH 10 110 42 HOH HOH A . F 4 HOH 11 111 23 HOH HOH A . F 4 HOH 12 112 47 HOH HOH A . F 4 HOH 13 113 44 HOH HOH A . F 4 HOH 14 114 73 HOH HOH A . F 4 HOH 15 115 35 HOH HOH A . F 4 HOH 16 116 24 HOH HOH A . F 4 HOH 17 117 22 HOH HOH A . F 4 HOH 18 118 26 HOH HOH A . F 4 HOH 19 119 37 HOH HOH A . F 4 HOH 20 120 50 HOH HOH A . F 4 HOH 21 121 54 HOH HOH A . F 4 HOH 22 122 1 HOH HOH A . F 4 HOH 23 123 38 HOH HOH A . G 4 HOH 1 201 55 HOH HOH B . G 4 HOH 2 202 28 HOH HOH B . G 4 HOH 3 203 56 HOH HOH B . G 4 HOH 4 204 32 HOH HOH B . G 4 HOH 5 205 71 HOH HOH B . G 4 HOH 6 206 65 HOH HOH B . G 4 HOH 7 207 69 HOH HOH B . G 4 HOH 8 208 20 HOH HOH B . G 4 HOH 9 209 12 HOH HOH B . G 4 HOH 10 210 68 HOH HOH B . G 4 HOH 11 211 74 HOH HOH B . G 4 HOH 12 212 11 HOH HOH B . G 4 HOH 13 213 9 HOH HOH B . G 4 HOH 14 214 17 HOH HOH B . G 4 HOH 15 215 13 HOH HOH B . G 4 HOH 16 216 39 HOH HOH B . G 4 HOH 17 217 25 HOH HOH B . G 4 HOH 18 218 61 HOH HOH B . G 4 HOH 19 219 33 HOH HOH B . G 4 HOH 20 220 59 HOH HOH B . G 4 HOH 21 221 57 HOH HOH B . G 4 HOH 22 222 62 HOH HOH B . H 4 HOH 1 201 48 HOH HOH C . H 4 HOH 2 202 5 HOH HOH C . H 4 HOH 3 203 64 HOH HOH C . H 4 HOH 4 204 27 HOH HOH C . H 4 HOH 5 205 52 HOH HOH C . H 4 HOH 6 206 34 HOH HOH C . H 4 HOH 7 207 18 HOH HOH C . H 4 HOH 8 208 41 HOH HOH C . H 4 HOH 9 209 46 HOH HOH C . H 4 HOH 10 210 8 HOH HOH C . H 4 HOH 11 211 63 HOH HOH C . H 4 HOH 12 212 43 HOH HOH C . H 4 HOH 13 213 15 HOH HOH C . H 4 HOH 14 214 7 HOH HOH C . H 4 HOH 15 215 51 HOH HOH C . H 4 HOH 16 216 19 HOH HOH C . H 4 HOH 17 217 40 HOH HOH C . H 4 HOH 18 218 45 HOH HOH C . H 4 HOH 19 219 60 HOH HOH C . H 4 HOH 20 220 21 HOH HOH C . H 4 HOH 21 221 67 HOH HOH C . H 4 HOH 22 222 49 HOH HOH C . H 4 HOH 23 223 4 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,F 2 1 B,D,G 3 1 C,E,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-28 2 'Structure model' 1 1 2016-10-12 3 'Structure model' 1 2 2016-10-26 4 'Structure model' 1 3 2016-11-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -5.1680 -10.0749 -3.1830 0.0152 0.1081 0.0681 -0.0272 0.0033 0.0305 10.7312 3.0466 3.5315 -1.1532 -3.4117 0.1244 -0.0824 0.0100 0.1013 -0.0952 -0.0753 -0.4115 -0.0648 0.0876 0.1577 'X-RAY DIFFRACTION' 2 ? refined -12.4749 -27.7360 -11.2320 0.0393 0.1097 0.0544 0.0176 -0.0154 -0.0049 3.4553 1.3783 11.4777 0.6462 -2.9775 -2.1757 0.1180 0.1590 -0.2748 -0.1828 -0.0249 -0.0397 0.2533 -0.3724 -0.0932 'X-RAY DIFFRACTION' 3 ? refined -21.2446 -5.9396 -16.3155 0.0412 0.1007 0.0041 0.0202 -0.0027 -0.0061 8.9611 3.7624 6.2766 1.7585 -5.2451 -2.2373 -0.1049 -0.0399 -0.0200 0.0268 0.0498 0.0481 -0.2059 0.0439 0.0552 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 45 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B -1 ? ? B 45 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C -1 ? ? C 45 ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0124 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 4 ? ? NE A ARG 4 ? ? CZ A ARG 4 ? ? 132.85 123.60 9.25 1.40 N 2 1 NE A ARG 4 ? ? CZ A ARG 4 ? ? NH1 A ARG 4 ? ? 126.21 120.30 5.91 0.50 N 3 1 NE A ARG 4 ? ? CZ A ARG 4 ? ? NH2 A ARG 4 ? ? 113.38 120.30 -6.92 0.50 N 4 1 NE A ARG 7 ? ? CZ A ARG 7 ? ? NH1 A ARG 7 ? ? 123.54 120.30 3.24 0.50 N 5 1 NE A ARG 7 ? ? CZ A ARG 7 ? ? NH2 A ARG 7 ? ? 115.96 120.30 -4.34 0.50 N 6 1 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 124.55 120.30 4.25 0.50 N 7 1 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH2 A ARG 16 ? ? 116.48 120.30 -3.82 0.50 N 8 1 NE B ARG 7 ? ? CZ B ARG 7 ? ? NH2 B ARG 7 ? ? 116.92 120.30 -3.38 0.50 N 9 1 NE B ARG 25 ? ? CZ B ARG 25 ? ? NH1 B ARG 25 ? ? 124.32 120.30 4.02 0.50 N 10 1 NE B ARG 25 ? ? CZ B ARG 25 ? ? NH2 B ARG 25 ? ? 117.09 120.30 -3.21 0.50 N 11 1 NE C ARG 4 ? ? CZ C ARG 4 ? ? NH2 C ARG 4 ? ? 117.23 120.30 -3.07 0.50 N 12 1 NE C ARG 16 ? ? CZ C ARG 16 ? ? NH1 C ARG 16 ? ? 124.52 120.30 4.22 0.50 N 13 1 NE C ARG 16 ? ? CZ C ARG 16 ? ? NH2 C ARG 16 ? ? 116.67 120.30 -3.63 0.50 N 14 1 NE C ARG 44 ? ? CZ C ARG 44 ? ? NH1 C ARG 44 ? ? 124.38 120.30 4.08 0.50 N # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 0 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id SER _pdbx_unobs_or_zero_occ_atoms.label_seq_id 2 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OG # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id -1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 GLYCEROL GOL 4 water HOH #