HEADER VIRAL PROTEIN 04-MAY-16 5JQ3 TITLE CRYSTAL STRUCTURE OF EBOLA GLYCOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN 1,ENVELOPE GLYCOPROTEIN 1,ENVELOPE COMPND 3 GLYCOPROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GP1,2,GP,GP1,2,GP,GP1,2,GP; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENVELOPE GLYCOPROTEIN 2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: GP1,2,GP; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976; SOURCE 3 ORGANISM_TAXID: 128952; SOURCE 4 GENE: GP; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976; SOURCE 11 ORGANISM_TAXID: 128952; SOURCE 12 GENE: GP; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS EBOLA VIRUS, FILOVIRIDAE, ENVELOPE GLYCOPROTEIN, PROTEIN INHIBITOR KEYWDS 2 COMPLEX, IBUPROFEN, TOREMIFENE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,J.REN,D.I.STUART REVDAT 4 10-JAN-24 5JQ3 1 HETSYN LINK REVDAT 3 29-JUL-20 5JQ3 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 13-JUL-16 5JQ3 1 JRNL REVDAT 1 29-JUN-16 5JQ3 0 JRNL AUTH Y.ZHAO,J.REN,K.HARLOS,D.M.JONES,A.ZELTINA,T.A.BOWDEN, JRNL AUTH 2 S.PADILLA-PARRA,E.E.FRY,D.I.STUART JRNL TITL TOREMIFENE INTERACTS WITH AND DESTABILIZES THE EBOLA VIRUS JRNL TITL 2 GLYCOPROTEIN. JRNL REF NATURE V. 535 168 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27362232 JRNL DOI 10.1038/NATURE18615 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2569 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3297 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3010 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4494 ; 1.244 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6936 ; 0.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 6.028 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;34.769 ;24.150 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;13.099 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3642 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 753 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 1.257 ; 4.142 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1565 ; 1.257 ; 4.139 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1947 ; 2.327 ; 6.188 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1948 ; 2.326 ; 6.192 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1731 ; 1.585 ; 4.744 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1731 ; 1.585 ; 4.744 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2548 ; 2.738 ; 7.059 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3555 ; 6.465 ;35.117 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3555 ; 6.465 ;35.117 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 478 REMARK 3 ORIGIN FOR THE GROUP (A): -52.4458 6.0476 -27.0355 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.1634 REMARK 3 T33: 0.0545 T12: -0.0174 REMARK 3 T13: 0.0359 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.8411 L22: 2.5901 REMARK 3 L33: 3.0502 L12: -0.5851 REMARK 3 L13: -0.3893 L23: 0.9463 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.1151 S13: -0.2476 REMARK 3 S21: -0.0767 S22: -0.0309 S23: -0.1252 REMARK 3 S31: 0.5848 S32: 0.1608 S33: 0.0503 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 502 B 631 REMARK 3 ORIGIN FOR THE GROUP (A): -52.0967 20.3186 -0.7096 REMARK 3 T TENSOR REMARK 3 T11: 0.3660 T22: 0.3590 REMARK 3 T33: 0.0467 T12: 0.0068 REMARK 3 T13: -0.0311 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.8969 L22: 1.8072 REMARK 3 L33: 1.2309 L12: -0.2307 REMARK 3 L13: -0.4139 L23: 0.2622 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: -0.4070 S13: 0.1401 REMARK 3 S21: 0.5845 S22: 0.0126 S23: -0.1499 REMARK 3 S31: 0.2026 S32: 0.2576 S33: 0.0519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07193 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 94.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 57.80 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3CSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% (W/V) PEG 6000 AND 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, PH 5.2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.12900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.98344 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 102.45900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.12900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.98344 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 102.45900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.12900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.98344 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 102.45900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.12900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.98344 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 102.45900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.12900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.98344 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.45900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.12900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.98344 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 102.45900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.96689 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 204.91800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.96689 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 204.91800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.96689 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 204.91800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.96689 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 204.91800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.96689 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 204.91800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.96689 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 204.91800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 39820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -57.12900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 98.95033 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -114.25800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 GLY A 30 REMARK 465 ARG A 31 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 PRO A 198 REMARK 465 LEU A 199 REMARK 465 ARG A 200 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 204 REMARK 465 ALA A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 ILE A 285 REMARK 465 GLY A 286 REMARK 465 LYS A 293A REMARK 465 LYS A 293B REMARK 465 ASN A 293C REMARK 465 LEU A 293D REMARK 465 THR A 293E REMARK 465 ARG A 293F REMARK 465 LYS A 293G REMARK 465 ILE A 293H REMARK 465 ARG A 293I REMARK 465 SER A 431 REMARK 465 THR A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 GLN A 435 REMARK 465 ASP A 436 REMARK 465 THR A 437 REMARK 465 GLY A 438 REMARK 465 GLU A 439 REMARK 465 GLU A 440 REMARK 465 SER A 441 REMARK 465 ALA A 442 REMARK 465 SER A 443 REMARK 465 SER A 444 REMARK 465 GLY A 445 REMARK 465 LYS A 446 REMARK 465 LEU A 447 REMARK 465 GLY A 448 REMARK 465 LEU A 449 REMARK 465 ILE A 450 REMARK 465 THR A 451 REMARK 465 ASN A 452 REMARK 465 THR A 453 REMARK 465 ILE A 454 REMARK 465 ALA A 455 REMARK 465 GLY A 456 REMARK 465 VAL A 457 REMARK 465 ALA A 458 REMARK 465 GLY A 459 REMARK 465 LEU A 460 REMARK 465 ILE A 461 REMARK 465 THR A 462 REMARK 465 GLY A 463 REMARK 465 GLY A 464 REMARK 465 ARG A 465 REMARK 465 ARG A 466 REMARK 465 THR A 467 REMARK 465 ARG A 468 REMARK 465 ARG A 469 REMARK 465 ASP B 632 REMARK 465 GLY B 633 REMARK 465 SER B 634 REMARK 465 GLY B 635 REMARK 465 TYR B 636 REMARK 465 ILE B 637 REMARK 465 PRO B 638 REMARK 465 GLU B 639 REMARK 465 ALA B 640 REMARK 465 PRO B 641 REMARK 465 ARG B 642 REMARK 465 ASP B 643 REMARK 465 GLY B 644 REMARK 465 GLN B 645 REMARK 465 ALA B 646 REMARK 465 TYR B 647 REMARK 465 VAL B 648 REMARK 465 ARG B 649 REMARK 465 LYS B 650 REMARK 465 ASP B 651 REMARK 465 GLY B 652 REMARK 465 GLU B 653 REMARK 465 TRP B 654 REMARK 465 VAL B 655 REMARK 465 LEU B 656 REMARK 465 LEU B 657 REMARK 465 SER B 658 REMARK 465 THR B 659 REMARK 465 PHE B 660 REMARK 465 LEU B 661 REMARK 465 GLY B 662 REMARK 465 THR B 663 REMARK 465 HIS B 664 REMARK 465 HIS B 665 REMARK 465 HIS B 666 REMARK 465 HIS B 667 REMARK 465 HIS B 668 REMARK 465 HIS B 669 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 162 -158.81 -114.65 REMARK 500 LYS A 190 95.26 -60.96 REMARK 500 GLU A 229 53.35 -98.75 REMARK 500 ASN A 268 54.66 -115.64 REMARK 500 ASN B 550 39.24 -88.12 REMARK 500 LEU B 604 -5.39 76.18 REMARK 500 CYS B 609 54.67 -94.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 5JQ3 A 32 431 UNP Q05320 VGP_EBOZM 32 312 DBREF 5JQ3 A 432 469 UNP Q05320 VGP_EBOZM 464 501 DBREF 5JQ3 A 470 478 PDB 5JQ3 5JQ3 470 478 DBREF 5JQ3 B 502 632 UNP Q05320 VGP_EBOZM 502 632 SEQADV 5JQ3 GLU A 28 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 THR A 29 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLY A 30 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ARG A 31 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ALA A 42 UNP Q05320 THR 42 ENGINEERED MUTATION SEQADV 5JQ3 GLY B 633 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 SER B 634 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLY B 635 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 TYR B 636 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ILE B 637 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 PRO B 638 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLU B 639 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ALA B 640 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 PRO B 641 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ARG B 642 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ASP B 643 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLY B 644 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLN B 645 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ALA B 646 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 TYR B 647 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 VAL B 648 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ARG B 649 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 LYS B 650 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 ASP B 651 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLY B 652 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLU B 653 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 TRP B 654 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 VAL B 655 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 LEU B 656 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 LEU B 657 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 SER B 658 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 THR B 659 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 PHE B 660 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 LEU B 661 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 GLY B 662 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 THR B 663 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 HIS B 664 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 HIS B 665 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 HIS B 666 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 HIS B 667 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 HIS B 668 UNP Q05320 EXPRESSION TAG SEQADV 5JQ3 HIS B 669 UNP Q05320 EXPRESSION TAG SEQRES 1 A 332 GLU THR GLY ARG SER ILE PRO LEU GLY VAL ILE HIS ASN SEQRES 2 A 332 SER ALA LEU GLN VAL SER ASP VAL ASP LYS LEU VAL CYS SEQRES 3 A 332 ARG ASP LYS LEU SER SER THR ASN GLN LEU ARG SER VAL SEQRES 4 A 332 GLY LEU ASN LEU GLU GLY ASN GLY VAL ALA THR ASP VAL SEQRES 5 A 332 PRO SER ALA THR LYS ARG TRP GLY PHE ARG SER GLY VAL SEQRES 6 A 332 PRO PRO LYS VAL VAL ASN TYR GLU ALA GLY GLU TRP ALA SEQRES 7 A 332 GLU ASN CYS TYR ASN LEU GLU ILE LYS LYS PRO ASP GLY SEQRES 8 A 332 SER GLU CYS LEU PRO ALA ALA PRO ASP GLY ILE ARG GLY SEQRES 9 A 332 PHE PRO ARG CYS ARG TYR VAL HIS LYS VAL SER GLY THR SEQRES 10 A 332 GLY PRO CYS ALA GLY ASP PHE ALA PHE HIS LYS GLU GLY SEQRES 11 A 332 ALA PHE PHE LEU TYR ASP ARG LEU ALA SER THR VAL ILE SEQRES 12 A 332 TYR ARG GLY THR THR PHE ALA GLU GLY VAL VAL ALA PHE SEQRES 13 A 332 LEU ILE LEU PRO GLN ALA LYS LYS ASP PHE PHE SER SER SEQRES 14 A 332 HIS PRO LEU ARG GLU PRO VAL ASN ALA THR GLU ASP PRO SEQRES 15 A 332 SER SER GLY TYR TYR SER THR THR ILE ARG TYR GLN ALA SEQRES 16 A 332 THR GLY PHE GLY THR ASN GLU THR GLU TYR LEU PHE GLU SEQRES 17 A 332 VAL ASP ASN LEU THR TYR VAL GLN LEU GLU SER ARG PHE SEQRES 18 A 332 THR PRO GLN PHE LEU LEU GLN LEU ASN GLU THR ILE TYR SEQRES 19 A 332 THR SER GLY LYS ARG SER ASN THR THR GLY LYS LEU ILE SEQRES 20 A 332 TRP LYS VAL ASN PRO GLU ILE ASP THR THR ILE GLY GLU SEQRES 21 A 332 TRP ALA PHE TRP GLU THR LYS LYS ASN LEU THR ARG LYS SEQRES 22 A 332 ILE ARG SER GLU GLU LEU SER PHE THR VAL VAL SER THR SEQRES 23 A 332 HIS HIS GLN ASP THR GLY GLU GLU SER ALA SER SER GLY SEQRES 24 A 332 LYS LEU GLY LEU ILE THR ASN THR ILE ALA GLY VAL ALA SEQRES 25 A 332 GLY LEU ILE THR GLY GLY ARG ARG THR ARG ARG UNK UNK SEQRES 26 A 332 UNK UNK UNK UNK UNK UNK UNK SEQRES 1 B 168 GLU ALA ILE VAL ASN ALA GLN PRO LYS CYS ASN PRO ASN SEQRES 2 B 168 LEU HIS TYR TRP THR THR GLN ASP GLU GLY ALA ALA ILE SEQRES 3 B 168 GLY LEU ALA TRP ILE PRO TYR PHE GLY PRO ALA ALA GLU SEQRES 4 B 168 GLY ILE TYR ILE GLU GLY LEU MET HIS ASN GLN ASP GLY SEQRES 5 B 168 LEU ILE CYS GLY LEU ARG GLN LEU ALA ASN GLU THR THR SEQRES 6 B 168 GLN ALA LEU GLN LEU PHE LEU ARG ALA THR THR GLU LEU SEQRES 7 B 168 ARG THR PHE SER ILE LEU ASN ARG LYS ALA ILE ASP PHE SEQRES 8 B 168 LEU LEU GLN ARG TRP GLY GLY THR CYS HIS ILE LEU GLY SEQRES 9 B 168 PRO ASP CYS CYS ILE GLU PRO HIS ASP TRP THR LYS ASN SEQRES 10 B 168 ILE THR ASP LYS ILE ASP GLN ILE ILE HIS ASP PHE VAL SEQRES 11 B 168 ASP GLY SER GLY TYR ILE PRO GLU ALA PRO ARG ASP GLY SEQRES 12 B 168 GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL LEU LEU SEQRES 13 B 168 SER THR PHE LEU GLY THR HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET GOL A 605 6 HET GOL A 606 6 HET NAG B 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *119(H2 O) HELIX 1 AA1 SER A 59 ASN A 61 5 3 HELIX 2 AA2 GLU A 71 GLY A 74 5 4 HELIX 3 AA3 ASP A 78 LYS A 84 1 7 HELIX 4 AA4 THR A 249 GLY A 264 1 16 HELIX 5 AA5 ALA B 538 GLY B 541 5 4 HELIX 6 AA6 ASN B 550 ASP B 552 5 3 HELIX 7 AA7 GLY B 553 THR B 576 1 24 HELIX 8 AA8 SER B 583 GLY B 598 1 16 HELIX 9 AA9 PRO B 612 ASP B 621 1 10 HELIX 10 AB1 LYS B 622 ASP B 624 5 3 SHEET 1 AA1 2 GLY A 36 HIS A 39 0 SHEET 2 AA1 2 ALA A 42 VAL A 45 -1 O GLN A 44 N VAL A 37 SHEET 1 AA2 6 LEU A 63 ASN A 69 0 SHEET 2 AA2 6 ALA A 177 ILE A 185 -1 O VAL A 180 N LEU A 68 SHEET 3 AA2 6 PHE A 159 LEU A 161 -1 N LEU A 161 O ALA A 177 SHEET 4 AA2 6 LEU A 165 SER A 167 -1 O SER A 167 N PHE A 160 SHEET 5 AA2 6 VAL A 96 ASN A 98 -1 N VAL A 97 O ALA A 166 SHEET 6 AA2 6 ARG B 580 THR B 581 1 O THR B 581 N VAL A 96 SHEET 1 AA3 2 TRP A 86 ARG A 89 0 SHEET 2 AA3 2 PHE A 151 HIS A 154 -1 O PHE A 153 N GLY A 87 SHEET 1 AA4 3 ALA A 101 GLU A 103 0 SHEET 2 AA4 3 LEU B 515 THR B 520 -1 O TRP B 518 N GLY A 102 SHEET 3 AA4 3 TYR B 543 MET B 548 -1 O ILE B 544 N THR B 519 SHEET 1 AA5 8 ALA A 105 LYS A 114 0 SHEET 2 AA5 8 CYS A 135 THR A 144 1 O HIS A 139 N CYS A 108 SHEET 3 AA5 8 THR A 216 THR A 223 1 O ILE A 218 N VAL A 138 SHEET 4 AA5 8 GLU A 231 ASP A 237 -1 O GLU A 235 N ARG A 219 SHEET 5 AA5 8 THR A 240 GLN A 243 -1 O VAL A 242 N PHE A 234 SHEET 6 AA5 8 LEU A 273 VAL A 277 1 O LEU A 273 N TYR A 241 SHEET 7 AA5 8 UNK A 472 UNK A 477 1 O UNK A 472 N ILE A 274 SHEET 8 AA5 8 SER A 306 VAL A 309 -1 N SER A 306 O UNK A 477 SSBOND 1 CYS A 53 CYS B 609 1555 1555 2.05 SSBOND 2 CYS A 108 CYS A 135 1555 1555 2.06 SSBOND 3 CYS A 121 CYS A 147 1555 1555 2.05 SSBOND 4 CYS B 511 CYS B 556 1555 1555 2.07 SSBOND 5 CYS B 601 CYS B 608 1555 1555 2.05 LINK ND2 ASN A 228 C1 NAG A 603 1555 1555 1.45 LINK ND2 ASN A 238 C1 NAG A 602 1555 1555 1.45 LINK ND2 ASN A 257 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 268 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN B 563 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 618 C1 NAG B 701 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.44 CRYST1 114.258 114.258 307.377 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008752 0.005053 0.000000 0.00000 SCALE2 0.000000 0.010106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003253 0.00000