HEADER OXIDOREDUCTASE 16-JUN-16 5KIA TITLE CRYSTAL STRUCTURE OF L-THREONINE 3-DEHYDROGENASE FROM BURKHOLDERIA TITLE 2 THAILANDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-THREONINE 3-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TDH; COMPND 5 EC: 1.1.1.103; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS (STRAIN ATCC 700388 SOURCE 3 / DSM 13276 / CIP 106301 / E264); SOURCE 4 ORGANISM_TAXID: 271848; SOURCE 5 STRAIN: ATCC 700388 / DSM 13276 / CIP 106301 / E264; SOURCE 6 ATCC: 700388; SOURCE 7 GENE: TDH, BTH_II0006; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BUTHA.10611.B.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 5KIA 1 LINK REVDAT 1 15-FEB-17 5KIA 0 JRNL AUTH J.ABENDROTH,C.M.LUKACS,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF L-THREONINE 3-DEHYDROGENASE FROM JRNL TITL 2 BURKHOLDERIA THAILANDENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9715 - 5.0598 0.99 1553 153 0.1866 0.2237 REMARK 3 2 5.0598 - 4.0167 1.00 1452 154 0.1404 0.1857 REMARK 3 3 4.0167 - 3.5091 1.00 1453 145 0.1544 0.1956 REMARK 3 4 3.5091 - 3.1883 1.00 1441 141 0.1624 0.2346 REMARK 3 5 3.1883 - 2.9599 1.00 1447 127 0.1886 0.2464 REMARK 3 6 2.9599 - 2.7854 1.00 1404 162 0.1911 0.2465 REMARK 3 7 2.7854 - 2.6459 1.00 1395 167 0.1868 0.2104 REMARK 3 8 2.6459 - 2.5307 1.00 1431 140 0.1871 0.2414 REMARK 3 9 2.5307 - 2.4333 1.00 1409 150 0.1902 0.2479 REMARK 3 10 2.4333 - 2.3493 1.00 1408 119 0.1937 0.2719 REMARK 3 11 2.3493 - 2.2759 1.00 1432 130 0.1901 0.2817 REMARK 3 12 2.2759 - 2.2108 1.00 1390 151 0.1966 0.2710 REMARK 3 13 2.2108 - 2.1526 1.00 1422 139 0.2002 0.2692 REMARK 3 14 2.1526 - 2.1001 1.00 1395 149 0.2167 0.2792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2558 REMARK 3 ANGLE : 0.771 3476 REMARK 3 CHIRALITY : 0.055 400 REMARK 3 PLANARITY : 0.006 448 REMARK 3 DIHEDRAL : 17.461 1500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9490 -21.4189 -29.1557 REMARK 3 T TENSOR REMARK 3 T11: 0.4551 T22: 0.5516 REMARK 3 T33: 0.5309 T12: -0.2024 REMARK 3 T13: -0.0233 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 2.0363 L22: 2.3227 REMARK 3 L33: 3.0095 L12: -0.4635 REMARK 3 L13: 0.6799 L23: -2.0173 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: 0.0758 S13: -0.4139 REMARK 3 S21: -0.4514 S22: 0.5807 S23: 0.8580 REMARK 3 S31: 0.6579 S32: -0.8595 S33: -0.2731 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 341 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3295 -23.8193 -3.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.2502 T22: 0.1614 REMARK 3 T33: 0.2274 T12: -0.0120 REMARK 3 T13: 0.0253 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 1.9342 L22: 1.5228 REMARK 3 L33: 2.4885 L12: -0.0974 REMARK 3 L13: -0.9371 L23: 0.1969 REMARK 3 S TENSOR REMARK 3 S11: -0.1035 S12: 0.0292 S13: -0.2676 REMARK 3 S21: -0.1343 S22: -0.0036 S23: 0.0298 REMARK 3 S31: 0.3088 S32: -0.0311 S33: 0.0871 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.958 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.208 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.33 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES, PHASER REMARK 200 STARTING MODEL: 2DQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTIC MCSG 1 SCREEN A10, 28% PEG REMARK 280 400, 200MM CACL2, 100MM HEPES/NAOH, BUTHA.10611.B.B1.PS01804 AT REMARK 280 20MG/ML + 2.5MM NAD; CRYO: DIRECT; TRAY 257666A10, PUCK XBM5-5, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 45.88500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.82500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.41250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.88500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.23750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.23750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.41250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 45.88500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.82500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.88500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 86.82500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.88500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 130.23750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 43.41250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.88500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 43.41250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 130.23750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.88500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.88500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 86.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 642 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 654 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ARG A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 58 REMARK 465 ALA A 342 REMARK 465 ALA A 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LEU A 7 CG CD1 CD2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 THR A 16 OG1 CG2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 ASP A 49 CG OD1 OD2 REMARK 470 TRP A 50 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 50 CZ3 CH2 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 VAL A 57 CG1 CG2 REMARK 470 VAL A 61 CG1 CG2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 111 CG1 CG2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 ARG A 221 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 637 O HOH A 643 2.13 REMARK 500 O HOH A 647 O HOH A 648 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 16 -162.72 -100.52 REMARK 500 ASP A 48 -138.08 -88.18 REMARK 500 ASP A 49 -73.72 -66.44 REMARK 500 VAL A 61 -166.05 -109.77 REMARK 500 HIS A 63 4.75 -157.01 REMARK 500 SER A 86 -162.10 -107.56 REMARK 500 VAL A 115 -65.15 -132.19 REMARK 500 ARG A 189 -98.74 -85.55 REMARK 500 GLN A 268 42.62 -96.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 109.9 REMARK 620 3 CYS A 99 SG 110.6 104.2 REMARK 620 4 CYS A 107 SG 106.9 123.9 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 148 O REMARK 620 2 ASP A 148 OD1 76.9 REMARK 620 3 ASP A 148 OD2 92.6 43.9 REMARK 620 4 ASN A 152 OD1 101.6 127.4 161.1 REMARK 620 5 GLU A 290 OE1 124.1 158.2 122.1 59.0 REMARK 620 6 GLU A 290 OE2 84.2 136.5 99.5 94.4 50.7 REMARK 620 7 HOH A 520 O 156.8 84.9 83.8 78.3 76.1 119.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 234 OD1 REMARK 620 2 ASP A 234 OD2 49.4 REMARK 620 3 HOH A 507 O 81.1 104.6 REMARK 620 4 HOH A 586 O 78.0 120.0 91.4 REMARK 620 5 HOH A 644 O 132.7 86.3 98.4 148.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUTHA.10611.B RELATED DB: TARGETTRACK DBREF 5KIA A 1 343 UNP Q2T9E1 TDH_BURTA 1 343 SEQADV 5KIA MET A -7 UNP Q2T9E1 INITIATING METHIONINE SEQADV 5KIA ALA A -6 UNP Q2T9E1 EXPRESSION TAG SEQADV 5KIA HIS A -5 UNP Q2T9E1 EXPRESSION TAG SEQADV 5KIA HIS A -4 UNP Q2T9E1 EXPRESSION TAG SEQADV 5KIA HIS A -3 UNP Q2T9E1 EXPRESSION TAG SEQADV 5KIA HIS A -2 UNP Q2T9E1 EXPRESSION TAG SEQADV 5KIA HIS A -1 UNP Q2T9E1 EXPRESSION TAG SEQADV 5KIA HIS A 0 UNP Q2T9E1 EXPRESSION TAG SEQRES 1 A 351 MET ALA HIS HIS HIS HIS HIS HIS MET LYS ALA LEU ALA SEQRES 2 A 351 LYS LEU GLU ARG GLY PRO GLY LEU THR LEU THR ARG VAL SEQRES 3 A 351 LYS LYS PRO GLU VAL GLY HIS ASN ASP VAL LEU ILE LYS SEQRES 4 A 351 ILE ARG ARG THR ALA ILE CYS GLY THR ASP ILE HIS ILE SEQRES 5 A 351 TRP LYS TRP ASP ASP TRP ALA GLN LYS THR ILE PRO VAL SEQRES 6 A 351 PRO MET HIS VAL GLY HIS GLU TYR VAL GLY GLU ILE VAL SEQRES 7 A 351 GLU MET GLY GLN GLU VAL ARG GLY PHE SER ILE GLY ASP SEQRES 8 A 351 ARG VAL SER GLY GLU GLY HIS ILE THR CYS GLY PHE CYS SEQRES 9 A 351 ARG ASN CYS ARG ALA GLY ARG ARG HIS LEU CYS ARG ASN SEQRES 10 A 351 THR VAL GLY VAL GLY VAL ASN ARG GLU GLY ALA PHE ALA SEQRES 11 A 351 GLU TYR LEU ALA ILE PRO ALA PHE ASN ALA PHE LYS ILE SEQRES 12 A 351 PRO PRO GLU ILE SER ASP ASP LEU ALA ALA ILE PHE ASP SEQRES 13 A 351 PRO PHE GLY ASN ALA THR HIS THR ALA LEU SER PHE ASN SEQRES 14 A 351 LEU VAL GLY GLU ASP VAL LEU ILE THR GLY ALA GLY PRO SEQRES 15 A 351 ILE GLY VAL MET ALA VAL ALA ILE ALA LYS HIS VAL GLY SEQRES 16 A 351 ALA ARG ASN VAL VAL ILE THR ASP ILE ASN ASP TYR ARG SEQRES 17 A 351 LEU ASP LEU ALA ARG ARG MET GLY ALA THR ARG ALA VAL SEQRES 18 A 351 ASN VAL SER ARG GLU SER LEU ARG ASP VAL MET ALA ASP SEQRES 19 A 351 LEU HIS MET THR GLU GLY PHE ASP VAL GLY LEU GLU MET SEQRES 20 A 351 SER GLY VAL PRO SER ALA PHE THR SER LEU LEU GLU SER SEQRES 21 A 351 MET ASN HIS GLY GLY LYS VAL ALA LEU LEU GLY ILE PRO SEQRES 22 A 351 PRO ALA GLN THR ALA ILE ASP TRP ASN GLN VAL ILE PHE SEQRES 23 A 351 LYS GLY LEU GLU ILE LYS GLY ILE TYR GLY ARG GLU MET SEQRES 24 A 351 PHE GLU THR TRP TYR LYS MET VAL ALA MET LEU GLN SER SEQRES 25 A 351 GLY LEU ASP LEU SER PRO ILE ILE THR HIS ARG PHE ALA SEQRES 26 A 351 VAL ASP ASP TYR GLU LYS GLY PHE ALA ALA MET LEU SER SEQRES 27 A 351 GLY GLU SER GLY LYS VAL ILE LEU ASP TRP ALA ALA ALA HET ZN A 400 1 HET CA A 401 1 HET CA A 402 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *158(H2 O) HELIX 1 AA1 CYS A 38 LYS A 46 1 9 HELIX 2 AA2 TRP A 50 ILE A 55 1 6 HELIX 3 AA3 CYS A 96 ALA A 101 1 6 HELIX 4 AA4 ARG A 103 CYS A 107 5 5 HELIX 5 AA5 SER A 140 ALA A 145 1 6 HELIX 6 AA6 ILE A 146 LEU A 158 1 13 HELIX 7 AA7 GLY A 173 VAL A 186 1 14 HELIX 8 AA8 ASN A 197 MET A 207 1 11 HELIX 9 AA9 SER A 219 LEU A 227 1 9 HELIX 10 AB1 VAL A 242 SER A 252 1 11 HELIX 11 AB2 ASP A 272 LYS A 279 1 8 HELIX 12 AB3 MET A 291 SER A 304 1 14 HELIX 13 AB4 LEU A 308 PRO A 310 5 3 HELIX 14 AB5 ASP A 320 GLY A 331 1 12 SHEET 1 AA1 2 MET A 1 ALA A 5 0 SHEET 2 AA1 2 THR A 14 VAL A 18 -1 O VAL A 18 N MET A 1 SHEET 1 AA2 5 TYR A 124 PRO A 128 0 SHEET 2 AA2 5 ASP A 27 ALA A 36 -1 N ILE A 30 O LEU A 125 SHEET 3 AA2 5 GLU A 64 MET A 72 -1 O GLU A 71 N LEU A 29 SHEET 4 AA2 5 ARG A 84 GLY A 87 -1 O VAL A 85 N GLY A 67 SHEET 5 AA2 5 ALA A 132 LYS A 134 -1 O PHE A 133 N SER A 86 SHEET 1 AA3 4 TYR A 124 PRO A 128 0 SHEET 2 AA3 4 ASP A 27 ALA A 36 -1 N ILE A 30 O LEU A 125 SHEET 3 AA3 4 LYS A 335 ASP A 339 -1 O LEU A 338 N THR A 35 SHEET 4 AA3 4 ILE A 312 ALA A 317 1 N PHE A 316 O ASP A 339 SHEET 1 AA4 2 HIS A 90 ILE A 91 0 SHEET 2 AA4 2 VAL A 111 GLY A 112 -1 O VAL A 111 N ILE A 91 SHEET 1 AA5 6 ARG A 211 ASN A 214 0 SHEET 2 AA5 6 VAL A 191 ASP A 195 1 N ILE A 193 O VAL A 213 SHEET 3 AA5 6 VAL A 167 THR A 170 1 N ILE A 169 O VAL A 192 SHEET 4 AA5 6 PHE A 233 GLU A 238 1 O LEU A 237 N LEU A 168 SHEET 5 AA5 6 MET A 253 LEU A 261 1 O ASN A 254 N PHE A 233 SHEET 6 AA5 6 GLU A 282 GLY A 285 1 O GLU A 282 N VAL A 259 LINK SG CYS A 93 ZN ZN A 400 1555 1555 2.53 LINK SG CYS A 96 ZN ZN A 400 1555 1555 2.33 LINK SG CYS A 99 ZN ZN A 400 1555 1555 2.42 LINK SG CYS A 107 ZN ZN A 400 1555 1555 2.45 LINK O ASP A 148 CA CA A 401 1555 1555 2.50 LINK OD1 ASP A 148 CA CA A 401 1555 1555 2.92 LINK OD2 ASP A 148 CA CA A 401 1555 1555 2.99 LINK OD1 ASN A 152 CA CA A 401 1555 1555 2.73 LINK OD1 ASP A 234 CA CA A 402 1555 1555 2.64 LINK OD2 ASP A 234 CA CA A 402 1555 1555 2.67 LINK OE1 GLU A 290 CA CA A 401 1555 1555 2.69 LINK OE2 GLU A 290 CA CA A 401 1555 1555 2.39 LINK CA CA A 401 O HOH A 520 1555 1555 2.36 LINK CA CA A 402 O HOH A 507 1555 1555 2.89 LINK CA CA A 402 O HOH A 586 1555 1555 2.81 LINK CA CA A 402 O HOH A 644 1555 1555 2.37 SITE 1 AC1 5 CYS A 93 GLY A 94 CYS A 96 CYS A 99 SITE 2 AC1 5 CYS A 107 SITE 1 AC2 4 ASP A 148 ASN A 152 GLU A 290 HOH A 520 SITE 1 AC3 4 ASP A 234 HOH A 507 HOH A 586 HOH A 644 CRYST1 91.770 91.770 173.650 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005759 0.00000