HEADER TRANSCRIPTION 07-JUL-16 5KRF TITLE CRYSTAL STRUCTURE OF THE ER-ALPHA LIGAND-BINDING DOMAIN (Y537S) IN TITLE 2 COMPLEX WITH THE DYNAMIC WAY DERIVATIVE, 1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 6 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: KHKILHRLLQDSSS PEPTIDE; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, LIGAND BINDING, PROTEIN- KEYWDS 2 LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,N.E.BRUNO,J.NOWAK,D.J.KOJETIN,O.ELEMENTO, AUTHOR 2 J.A.KATZENELLENBOGEN,K.W.NETTLES REVDAT 2 06-MAR-24 5KRF 1 REMARK REVDAT 1 15-FEB-17 5KRF 0 JRNL AUTH J.C.NWACHUKWU,S.SRINIVASAN,N.E.BRUNO,J.NOWAK,N.J.WRIGHT, JRNL AUTH 2 F.MINUTOLO,E.S.RANGARAJAN,T.IZARD,X.Q.YAO,B.J.GRANT, JRNL AUTH 3 D.J.KOJETIN,O.ELEMENTO,J.A.KATZENELLENBOGEN,K.W.NETTLES JRNL TITL SYSTEMS STRUCTURAL BIOLOGY ANALYSIS OF LIGAND EFFECTS ON ER JRNL TITL 2 ALPHA PREDICTS CELLULAR RESPONSE TO ENVIRONMENTAL ESTROGENS JRNL TITL 3 AND ANTI-HORMONE THERAPIES. JRNL REF CELL CHEM BIOL V. 24 35 2017 JRNL REFN ESSN 2451-9456 JRNL PMID 28042045 JRNL DOI 10.1016/J.CHEMBIOL.2016.11.014 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 22143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8418 - 5.1537 0.98 1735 155 0.1932 0.2613 REMARK 3 2 5.1537 - 4.0915 0.97 1672 153 0.1837 0.2093 REMARK 3 3 4.0915 - 3.5745 0.92 1570 144 0.1905 0.2051 REMARK 3 4 3.5745 - 3.2478 0.96 1648 148 0.2277 0.2703 REMARK 3 5 3.2478 - 3.0150 0.95 1639 152 0.2479 0.2628 REMARK 3 6 3.0150 - 2.8373 0.94 1633 142 0.2503 0.2869 REMARK 3 7 2.8373 - 2.6952 0.88 1498 133 0.2852 0.3291 REMARK 3 8 2.6952 - 2.5779 0.90 1566 140 0.2805 0.3275 REMARK 3 9 2.5779 - 2.4787 0.90 1529 135 0.2819 0.3053 REMARK 3 10 2.4787 - 2.3932 0.88 1498 141 0.2717 0.3378 REMARK 3 11 2.3932 - 2.3183 0.87 1472 132 0.2877 0.3590 REMARK 3 12 2.3183 - 2.2521 0.84 1447 136 0.2873 0.3242 REMARK 3 13 2.2521 - 2.1928 0.80 1402 123 0.3086 0.3627 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3989 REMARK 3 ANGLE : 0.956 5408 REMARK 3 CHIRALITY : 0.215 638 REMARK 3 PLANARITY : 0.002 670 REMARK 3 DIHEDRAL : 13.535 1473 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0383 40.7344 -1.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.3929 T22: 0.5541 REMARK 3 T33: 0.7935 T12: -0.0150 REMARK 3 T13: -0.1399 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.2855 L22: 6.3026 REMARK 3 L33: 5.3168 L12: 2.8089 REMARK 3 L13: 2.5908 L23: 5.6777 REMARK 3 S TENSOR REMARK 3 S11: -0.5571 S12: 0.1920 S13: 0.3136 REMARK 3 S21: 0.4309 S22: 0.4828 S23: -0.5782 REMARK 3 S31: -0.6499 S32: -0.2658 S33: 0.0522 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7922 30.2948 -7.0275 REMARK 3 T TENSOR REMARK 3 T11: 0.4245 T22: 0.4399 REMARK 3 T33: 0.4097 T12: -0.0050 REMARK 3 T13: -0.0341 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 5.5595 L22: 5.4846 REMARK 3 L33: 4.3017 L12: -5.4295 REMARK 3 L13: 0.9431 L23: -0.5037 REMARK 3 S TENSOR REMARK 3 S11: 0.3187 S12: 1.3902 S13: 0.5967 REMARK 3 S21: -1.1831 S22: -0.6798 S23: -0.5079 REMARK 3 S31: -0.1490 S32: -0.4377 S33: 0.0465 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9022 9.0201 -6.3876 REMARK 3 T TENSOR REMARK 3 T11: 0.4112 T22: 0.6836 REMARK 3 T33: 0.4101 T12: -0.0335 REMARK 3 T13: 0.0174 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 3.4989 L22: 5.8564 REMARK 3 L33: 1.6632 L12: -2.0489 REMARK 3 L13: 0.9139 L23: -0.8620 REMARK 3 S TENSOR REMARK 3 S11: 0.5193 S12: 0.2354 S13: -0.1327 REMARK 3 S21: -0.6791 S22: -0.5908 S23: -0.6946 REMARK 3 S31: 0.3616 S32: 0.1849 S33: 0.0876 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4988 23.2940 2.0820 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.3009 REMARK 3 T33: 0.3061 T12: -0.0141 REMARK 3 T13: -0.0239 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.9923 L22: 1.0066 REMARK 3 L33: 1.5544 L12: -0.4781 REMARK 3 L13: -0.2308 L23: 0.4878 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: -0.0104 S13: 0.1645 REMARK 3 S21: -0.0452 S22: 0.0626 S23: -0.2828 REMARK 3 S31: -0.1653 S32: 0.2372 S33: -0.0217 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1805 5.8514 -2.8215 REMARK 3 T TENSOR REMARK 3 T11: 0.4881 T22: 0.4232 REMARK 3 T33: 0.4148 T12: -0.0132 REMARK 3 T13: 0.0475 T23: -0.0765 REMARK 3 L TENSOR REMARK 3 L11: 4.0446 L22: 1.1090 REMARK 3 L33: 3.7204 L12: 1.5490 REMARK 3 L13: -2.5394 L23: 0.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.1243 S12: 0.6713 S13: -0.6207 REMARK 3 S21: -0.3609 S22: -0.0136 S23: -0.0106 REMARK 3 S31: 0.7387 S32: -0.1659 S33: 0.0760 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4722 4.8911 7.6324 REMARK 3 T TENSOR REMARK 3 T11: 0.4617 T22: 0.3082 REMARK 3 T33: 0.3951 T12: 0.0078 REMARK 3 T13: 0.0687 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 4.8322 L22: 3.5587 REMARK 3 L33: 3.8705 L12: -1.8108 REMARK 3 L13: 0.4974 L23: 0.0713 REMARK 3 S TENSOR REMARK 3 S11: -0.3614 S12: -0.0416 S13: -0.2500 REMARK 3 S21: 0.1652 S22: 0.2034 S23: -0.1079 REMARK 3 S31: 0.2657 S32: 0.3675 S33: 0.0969 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6680 27.3208 4.0908 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.3133 REMARK 3 T33: 0.2743 T12: 0.0197 REMARK 3 T13: 0.0138 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 6.7068 L22: 3.8647 REMARK 3 L33: 3.1433 L12: 0.6554 REMARK 3 L13: 0.0584 L23: 0.7648 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: -0.2397 S13: 0.6095 REMARK 3 S21: -0.2359 S22: -0.0876 S23: 0.0638 REMARK 3 S31: -0.4073 S32: -0.1592 S33: -0.0242 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 497 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4774 17.0974 11.3791 REMARK 3 T TENSOR REMARK 3 T11: 0.3342 T22: 0.2173 REMARK 3 T33: 0.1928 T12: 0.0324 REMARK 3 T13: 0.0124 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 9.2468 L22: 2.0486 REMARK 3 L33: 2.6170 L12: -0.0682 REMARK 3 L13: 1.5519 L23: -0.2595 REMARK 3 S TENSOR REMARK 3 S11: 0.2383 S12: -0.4771 S13: 0.2647 REMARK 3 S21: 0.1032 S22: -0.2288 S23: -0.1011 REMARK 3 S31: 0.4129 S32: 0.0283 S33: -0.0252 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 532 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8984 20.0469 8.7472 REMARK 3 T TENSOR REMARK 3 T11: 0.5332 T22: 0.4846 REMARK 3 T33: 0.5512 T12: 0.0929 REMARK 3 T13: -0.0842 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 4.4946 L22: 4.9024 REMARK 3 L33: 7.5163 L12: 1.3930 REMARK 3 L13: -1.3322 L23: 1.0799 REMARK 3 S TENSOR REMARK 3 S11: -0.3884 S12: -0.6351 S13: 0.3343 REMARK 3 S21: 1.1488 S22: 0.1641 S23: -0.7690 REMARK 3 S31: 1.7824 S32: 0.8531 S33: 0.0389 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 305 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2360 21.4577 35.8421 REMARK 3 T TENSOR REMARK 3 T11: 0.4137 T22: 0.5192 REMARK 3 T33: 0.3970 T12: 0.0394 REMARK 3 T13: 0.0823 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 3.8920 L22: 2.5746 REMARK 3 L33: 2.8883 L12: 1.4906 REMARK 3 L13: 1.1780 L23: 0.8576 REMARK 3 S TENSOR REMARK 3 S11: 0.1987 S12: -0.1164 S13: -0.0281 REMARK 3 S21: 0.3203 S22: -0.0254 S23: 0.1858 REMARK 3 S31: -0.0111 S32: -0.2822 S33: -0.1298 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1245 18.2220 32.6092 REMARK 3 T TENSOR REMARK 3 T11: 0.3291 T22: 0.3562 REMARK 3 T33: 0.2433 T12: -0.0035 REMARK 3 T13: 0.0196 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.9003 L22: 2.7617 REMARK 3 L33: 3.4849 L12: 0.1108 REMARK 3 L13: 0.4780 L23: 1.4449 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.2105 S13: -0.1479 REMARK 3 S21: 0.1778 S22: 0.0125 S23: 0.0328 REMARK 3 S31: 0.1412 S32: 0.1215 S33: 0.0450 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 411 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5266 31.5225 32.9483 REMARK 3 T TENSOR REMARK 3 T11: 0.7227 T22: 0.6931 REMARK 3 T33: 1.4456 T12: -0.1630 REMARK 3 T13: 0.0494 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.2278 L22: 3.2142 REMARK 3 L33: 3.7709 L12: 0.9177 REMARK 3 L13: -1.2090 L23: -3.3434 REMARK 3 S TENSOR REMARK 3 S11: 1.0900 S12: -0.1291 S13: 0.6174 REMARK 3 S21: 0.9051 S22: -0.0548 S23: -0.7383 REMARK 3 S31: -1.1636 S32: 0.7254 S33: -0.5329 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 422 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7522 32.1716 24.8008 REMARK 3 T TENSOR REMARK 3 T11: 0.4697 T22: 0.3740 REMARK 3 T33: 0.2768 T12: -0.0822 REMARK 3 T13: 0.0116 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 6.3728 L22: 4.7676 REMARK 3 L33: 5.2788 L12: 0.4346 REMARK 3 L13: 0.7636 L23: 0.0490 REMARK 3 S TENSOR REMARK 3 S11: -0.5129 S12: 0.0299 S13: 0.7410 REMARK 3 S21: 0.1600 S22: 0.2377 S23: -0.4636 REMARK 3 S31: -0.9687 S32: 0.6246 S33: 0.0435 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 438 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5260 23.6101 23.7298 REMARK 3 T TENSOR REMARK 3 T11: 0.3616 T22: 0.3894 REMARK 3 T33: 0.2730 T12: 0.0438 REMARK 3 T13: -0.0065 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.2973 L22: 4.2497 REMARK 3 L33: 3.9357 L12: 0.9191 REMARK 3 L13: 0.3243 L23: 0.0236 REMARK 3 S TENSOR REMARK 3 S11: 0.3044 S12: 0.1536 S13: 0.2716 REMARK 3 S21: -0.2164 S22: -0.3114 S23: 0.0159 REMARK 3 S31: -0.2790 S32: -0.6767 S33: -0.0488 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 456 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6258 3.8499 15.3954 REMARK 3 T TENSOR REMARK 3 T11: 0.9514 T22: 1.1858 REMARK 3 T33: 0.5307 T12: -0.0182 REMARK 3 T13: 0.2264 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 7.3564 L22: 6.0321 REMARK 3 L33: 4.1090 L12: 2.7067 REMARK 3 L13: 5.4167 L23: 1.9291 REMARK 3 S TENSOR REMARK 3 S11: -0.5943 S12: -0.5884 S13: -0.5882 REMARK 3 S21: 0.4720 S22: -0.7975 S23: -0.3361 REMARK 3 S31: 0.8998 S32: 0.0445 S33: 1.0823 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 470 THROUGH 531 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3208 21.2367 18.6741 REMARK 3 T TENSOR REMARK 3 T11: 0.3254 T22: 0.3017 REMARK 3 T33: 0.2914 T12: 0.0014 REMARK 3 T13: 0.0780 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.9335 L22: 2.6619 REMARK 3 L33: 2.4501 L12: -1.3416 REMARK 3 L13: 0.3797 L23: -0.8903 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: 0.0567 S13: -0.1266 REMARK 3 S21: 0.0755 S22: 0.0726 S23: 0.2977 REMARK 3 S31: -0.0676 S32: -0.2098 S33: 0.0842 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 532 THROUGH 549 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0749 9.3240 32.6227 REMARK 3 T TENSOR REMARK 3 T11: 0.4862 T22: 0.4936 REMARK 3 T33: 0.5558 T12: 0.0296 REMARK 3 T13: -0.0444 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 6.3774 L22: 3.4521 REMARK 3 L33: 3.1878 L12: 1.3129 REMARK 3 L13: -0.1270 L23: -0.4198 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: -0.2794 S13: -0.1273 REMARK 3 S21: -0.3406 S22: -0.1027 S23: -0.4000 REMARK 3 S31: 0.0039 S32: 0.5212 S33: 0.2544 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 687 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5957 33.6605 1.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.4616 T22: 0.6058 REMARK 3 T33: 0.6412 T12: -0.0859 REMARK 3 T13: 0.1062 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 5.0061 L22: 2.2287 REMARK 3 L33: 6.5134 L12: -2.2931 REMARK 3 L13: -1.7478 L23: 1.5601 REMARK 3 S TENSOR REMARK 3 S11: 0.1795 S12: 0.0258 S13: 0.4931 REMARK 3 S21: -0.0926 S22: -0.3648 S23: -0.9460 REMARK 3 S31: -1.0553 S32: 1.2913 S33: -0.0918 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 687 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7134 1.6696 35.3135 REMARK 3 T TENSOR REMARK 3 T11: 0.6246 T22: 0.5384 REMARK 3 T33: 0.5275 T12: -0.0227 REMARK 3 T13: -0.1027 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 6.5506 L22: 1.5293 REMARK 3 L33: 0.5246 L12: -0.1939 REMARK 3 L13: -1.0774 L23: 0.3749 REMARK 3 S TENSOR REMARK 3 S11: -0.3349 S12: -0.6842 S13: -1.2119 REMARK 3 S21: 0.1256 S22: 0.1077 S23: 0.3059 REMARK 3 S31: 0.2351 S32: -0.0230 S33: 0.2012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1000222650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.96700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MGCL2, 0.067M REMARK 280 NACL, 0.1M TRIS, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.43750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 CYS B 417 REMARK 465 VAL B 418 REMARK 465 GLU B 419 REMARK 465 GLY B 420 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 SER C 697 REMARK 465 SER C 698 REMARK 465 SER C 699 REMARK 465 LYS D 686 REMARK 465 SER D 697 REMARK 465 SER D 698 REMARK 465 SER D 699 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 PHE B 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 MET B 342 CG SD CE REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 ARG B 412 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 TYR B 459 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 466 CG CD1 CD2 REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 GLU B 471 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 HIS C 687 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 687 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 331 21.53 -77.97 REMARK 500 TYR B 459 47.22 -105.60 REMARK 500 LYS B 467 -5.23 61.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 762 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 763 DISTANCE = 6.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6WL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6WL B 601 DBREF 5KRF A 298 554 UNP P03372 ESR1_HUMAN 125 381 DBREF 5KRF B 298 554 UNP P03372 ESR1_HUMAN 125 381 DBREF 5KRF C 686 699 PDB 5KRF 5KRF 686 699 DBREF 5KRF D 686 699 PDB 5KRF 5KRF 686 699 SEQADV 5KRF SER A 537 UNP P03372 TYR 364 ENGINEERED MUTATION SEQADV 5KRF SER B 537 UNP P03372 TYR 364 ENGINEERED MUTATION SEQRES 1 A 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 257 ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 257 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 257 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 257 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 257 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 257 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 257 VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 257 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 257 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 257 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 257 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 257 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 257 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 257 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 257 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 257 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 257 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 257 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 B 257 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 257 ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 SER HET 6WL A 601 22 HET 6WL B 601 22 HETNAM 6WL 4-[1-METHYL-7-(TRIFLUOROMETHYL)INDAZOL-3-YL]BENZENE-1, HETNAM 2 6WL 3-DIOL FORMUL 5 6WL 2(C15 H11 F3 N2 O2) FORMUL 7 HOH *141(H2 O) HELIX 1 AA1 SER A 305 LEU A 310 1 6 HELIX 2 AA2 THR A 311 ALA A 322 1 12 HELIX 3 AA3 SER A 338 ARG A 363 1 26 HELIX 4 AA4 THR A 371 SER A 395 1 25 HELIX 5 AA5 ASP A 411 LYS A 416 1 6 HELIX 6 AA6 GLY A 420 MET A 438 1 19 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 ASP A 473 ALA A 493 1 21 HELIX 9 AA9 THR A 496 ASN A 532 1 37 HELIX 10 AB1 SER A 537 ARG A 548 1 12 HELIX 11 AB2 THR B 311 ALA B 322 1 12 HELIX 12 AB3 SER B 338 ARG B 363 1 26 HELIX 13 AB4 THR B 371 SER B 395 1 25 HELIX 14 AB5 VAL B 422 ASN B 439 1 18 HELIX 15 AB6 GLN B 441 SER B 456 1 16 HELIX 16 AB7 SER B 468 ALA B 493 1 26 HELIX 17 AB8 THR B 496 ASN B 532 1 37 HELIX 18 AB9 SER B 537 ARG B 548 1 12 HELIX 19 AC1 LYS C 688 LEU C 694 1 7 HELIX 20 AC2 LYS D 688 ASP D 696 1 9 SHEET 1 AA1 2 LEU A 402 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 LEU A 410 -1 O LEU A 408 N ALA A 405 SHEET 1 AA2 2 LYS B 401 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 ASP B 411 -1 O LEU B 408 N ALA B 405 SITE 1 AC1 11 MET A 343 GLU A 353 LEU A 387 MET A 388 SITE 2 AC1 11 LEU A 391 ARG A 394 MET A 421 GLY A 521 SITE 3 AC1 11 HIS A 524 LEU A 525 HOH A 732 SITE 1 AC2 7 GLU B 353 LEU B 387 MET B 388 ARG B 394 SITE 2 AC2 7 GLY B 521 HIS B 524 HOH B 721 CRYST1 54.361 80.875 58.113 90.00 109.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018396 0.000000 0.006525 0.00000 SCALE2 0.000000 0.012365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018258 0.00000