data_5KVM # _entry.id 5KVM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5KVM WWPDB D_1000222801 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KVM _pdbx_database_status.recvd_initial_deposition_date 2016-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Salzman, G.S.' 1 'Ding, C.' 2 'Koide, S.' 3 'Arac, D.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Neuron _citation.journal_id_ASTM NERNET _citation.journal_id_CSD 2038 _citation.journal_id_ISSN 1097-4199 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 91 _citation.language ? _citation.page_first 1292 _citation.page_last 1304 _citation.title 'Structural Basis for Regulation of GPR56/ADGRG1 by Its Alternatively Spliced Extracellular Domains.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.neuron.2016.08.022 _citation.pdbx_database_id_PubMed 27657451 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Salzman, G.S.' 1 ? primary 'Ackerman, S.D.' 2 ? primary 'Ding, C.' 3 ? primary 'Koide, A.' 4 ? primary 'Leon, K.' 5 ? primary 'Luo, R.' 6 ? primary 'Stoveken, H.M.' 7 ? primary 'Fernandez, C.G.' 8 ? primary 'Tall, G.G.' 9 ? primary 'Piao, X.' 10 ? primary 'Monk, K.R.' 11 ? primary 'Koide, S.' 12 ? primary 'Arac, D.' 13 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5KVM _cell.details ? _cell.formula_units_Z ? _cell.length_a 120.336 _cell.length_a_esd ? _cell.length_b 120.336 _cell.length_b_esd ? _cell.length_c 72.850 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Adhesion G-protein coupled receptor G1' 40330.262 1 ? ? 'N-terminal Fragment (UNP residues 28-382)' ? 2 polymer man 'Adhesion G-protein coupled receptor G1' 1030.237 1 ? ? 'C-terminal fragment (UNP residues 383-391)' ? 3 polymer man 'FN3 monobody alpha5' 10390.479 1 ? ? ? ? 4 branched man ;beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 748.682 1 ? ? ? ? 5 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 6 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 7 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 8 water nat water 18.015 24 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'G-protein coupled receptor 56,Serpentine receptor cyt28' 2 'G-protein coupled receptor 56,Serpentine receptor cyt28' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PREDFRFCGQRNQTQQSTLHYDQSSEPHIFVWNTEETLTIRAPFLAAPDIPRFFPEPRGLYHFCLYWSRHTGRLHLRYGK HDYLLSSQASRLLCFQKQEQSLKQGAPLIATSVSSWQIPQNTSLPGAPSFIFSFHNAPHKVSHNASVDMCDLKKELQQLS RYLQHPQKAAKRPTAAFISQQLQSLESKLTSVSFLGDTLSFEEDRVNATVWKLPPTAGLEDLHIHSQKEEEQSEVQAYSL LLPRAVFQQTRGRRRDDAKRLLVVDFSSQALFQDKNSSQVLGEKVLGIVVQNTKVTNLSDPVVLTFQHQPQPKNVTLQCV FWVEDPASSSTGSWSSAGCETVSRDTQTSCLCNHL ; ;PREDFRFCGQRNQTQQSTLHYDQSSEPHIFVWNTEETLTIRAPFLAAPDIPRFFPEPRGLYHFCLYWSRHTGRLHLRYGK HDYLLSSQASRLLCFQKQEQSLKQGAPLIATSVSSWQIPQNTSLPGAPSFIFSFHNAPHKVSHNASVDMCDLKKELQQLS RYLQHPQKAAKRPTAAFISQQLQSLESKLTSVSFLGDTLSFEEDRVNATVWKLPPTAGLEDLHIHSQKEEEQSEVQAYSL LLPRAVFQQTRGRRRDDAKRLLVVDFSSQALFQDKNSSQVLGEKVLGIVVQNTKVTNLSDPVVLTFQHQPQPKNVTLQCV FWVEDPASSSTGSWSSAGCETVSRDTQTSCLCNHL ; A ? 2 'polypeptide(L)' no no TYFAVLMVS TYFAVLMVS B ? 3 'polypeptide(L)' no no ;SVPTKLEVVAATPTSLLISWDAPAVTVDHYVITYGETGGSPWSWQEFEVPGSKSTATISGLKPGVDYTITVYASSFDWTI FPNYYSSPISINYRT ; ;SVPTKLEVVAATPTSLLISWDAPAVTVDHYVITYGETGGSPWSWQEFEVPGSKSTATISGLKPGVDYTITVYASSFDWTI FPNYYSSPISINYRT ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ARG n 1 3 GLU n 1 4 ASP n 1 5 PHE n 1 6 ARG n 1 7 PHE n 1 8 CYS n 1 9 GLY n 1 10 GLN n 1 11 ARG n 1 12 ASN n 1 13 GLN n 1 14 THR n 1 15 GLN n 1 16 GLN n 1 17 SER n 1 18 THR n 1 19 LEU n 1 20 HIS n 1 21 TYR n 1 22 ASP n 1 23 GLN n 1 24 SER n 1 25 SER n 1 26 GLU n 1 27 PRO n 1 28 HIS n 1 29 ILE n 1 30 PHE n 1 31 VAL n 1 32 TRP n 1 33 ASN n 1 34 THR n 1 35 GLU n 1 36 GLU n 1 37 THR n 1 38 LEU n 1 39 THR n 1 40 ILE n 1 41 ARG n 1 42 ALA n 1 43 PRO n 1 44 PHE n 1 45 LEU n 1 46 ALA n 1 47 ALA n 1 48 PRO n 1 49 ASP n 1 50 ILE n 1 51 PRO n 1 52 ARG n 1 53 PHE n 1 54 PHE n 1 55 PRO n 1 56 GLU n 1 57 PRO n 1 58 ARG n 1 59 GLY n 1 60 LEU n 1 61 TYR n 1 62 HIS n 1 63 PHE n 1 64 CYS n 1 65 LEU n 1 66 TYR n 1 67 TRP n 1 68 SER n 1 69 ARG n 1 70 HIS n 1 71 THR n 1 72 GLY n 1 73 ARG n 1 74 LEU n 1 75 HIS n 1 76 LEU n 1 77 ARG n 1 78 TYR n 1 79 GLY n 1 80 LYS n 1 81 HIS n 1 82 ASP n 1 83 TYR n 1 84 LEU n 1 85 LEU n 1 86 SER n 1 87 SER n 1 88 GLN n 1 89 ALA n 1 90 SER n 1 91 ARG n 1 92 LEU n 1 93 LEU n 1 94 CYS n 1 95 PHE n 1 96 GLN n 1 97 LYS n 1 98 GLN n 1 99 GLU n 1 100 GLN n 1 101 SER n 1 102 LEU n 1 103 LYS n 1 104 GLN n 1 105 GLY n 1 106 ALA n 1 107 PRO n 1 108 LEU n 1 109 ILE n 1 110 ALA n 1 111 THR n 1 112 SER n 1 113 VAL n 1 114 SER n 1 115 SER n 1 116 TRP n 1 117 GLN n 1 118 ILE n 1 119 PRO n 1 120 GLN n 1 121 ASN n 1 122 THR n 1 123 SER n 1 124 LEU n 1 125 PRO n 1 126 GLY n 1 127 ALA n 1 128 PRO n 1 129 SER n 1 130 PHE n 1 131 ILE n 1 132 PHE n 1 133 SER n 1 134 PHE n 1 135 HIS n 1 136 ASN n 1 137 ALA n 1 138 PRO n 1 139 HIS n 1 140 LYS n 1 141 VAL n 1 142 SER n 1 143 HIS n 1 144 ASN n 1 145 ALA n 1 146 SER n 1 147 VAL n 1 148 ASP n 1 149 MET n 1 150 CYS n 1 151 ASP n 1 152 LEU n 1 153 LYS n 1 154 LYS n 1 155 GLU n 1 156 LEU n 1 157 GLN n 1 158 GLN n 1 159 LEU n 1 160 SER n 1 161 ARG n 1 162 TYR n 1 163 LEU n 1 164 GLN n 1 165 HIS n 1 166 PRO n 1 167 GLN n 1 168 LYS n 1 169 ALA n 1 170 ALA n 1 171 LYS n 1 172 ARG n 1 173 PRO n 1 174 THR n 1 175 ALA n 1 176 ALA n 1 177 PHE n 1 178 ILE n 1 179 SER n 1 180 GLN n 1 181 GLN n 1 182 LEU n 1 183 GLN n 1 184 SER n 1 185 LEU n 1 186 GLU n 1 187 SER n 1 188 LYS n 1 189 LEU n 1 190 THR n 1 191 SER n 1 192 VAL n 1 193 SER n 1 194 PHE n 1 195 LEU n 1 196 GLY n 1 197 ASP n 1 198 THR n 1 199 LEU n 1 200 SER n 1 201 PHE n 1 202 GLU n 1 203 GLU n 1 204 ASP n 1 205 ARG n 1 206 VAL n 1 207 ASN n 1 208 ALA n 1 209 THR n 1 210 VAL n 1 211 TRP n 1 212 LYS n 1 213 LEU n 1 214 PRO n 1 215 PRO n 1 216 THR n 1 217 ALA n 1 218 GLY n 1 219 LEU n 1 220 GLU n 1 221 ASP n 1 222 LEU n 1 223 HIS n 1 224 ILE n 1 225 HIS n 1 226 SER n 1 227 GLN n 1 228 LYS n 1 229 GLU n 1 230 GLU n 1 231 GLU n 1 232 GLN n 1 233 SER n 1 234 GLU n 1 235 VAL n 1 236 GLN n 1 237 ALA n 1 238 TYR n 1 239 SER n 1 240 LEU n 1 241 LEU n 1 242 LEU n 1 243 PRO n 1 244 ARG n 1 245 ALA n 1 246 VAL n 1 247 PHE n 1 248 GLN n 1 249 GLN n 1 250 THR n 1 251 ARG n 1 252 GLY n 1 253 ARG n 1 254 ARG n 1 255 ARG n 1 256 ASP n 1 257 ASP n 1 258 ALA n 1 259 LYS n 1 260 ARG n 1 261 LEU n 1 262 LEU n 1 263 VAL n 1 264 VAL n 1 265 ASP n 1 266 PHE n 1 267 SER n 1 268 SER n 1 269 GLN n 1 270 ALA n 1 271 LEU n 1 272 PHE n 1 273 GLN n 1 274 ASP n 1 275 LYS n 1 276 ASN n 1 277 SER n 1 278 SER n 1 279 GLN n 1 280 VAL n 1 281 LEU n 1 282 GLY n 1 283 GLU n 1 284 LYS n 1 285 VAL n 1 286 LEU n 1 287 GLY n 1 288 ILE n 1 289 VAL n 1 290 VAL n 1 291 GLN n 1 292 ASN n 1 293 THR n 1 294 LYS n 1 295 VAL n 1 296 THR n 1 297 ASN n 1 298 LEU n 1 299 SER n 1 300 ASP n 1 301 PRO n 1 302 VAL n 1 303 VAL n 1 304 LEU n 1 305 THR n 1 306 PHE n 1 307 GLN n 1 308 HIS n 1 309 GLN n 1 310 PRO n 1 311 GLN n 1 312 PRO n 1 313 LYS n 1 314 ASN n 1 315 VAL n 1 316 THR n 1 317 LEU n 1 318 GLN n 1 319 CYS n 1 320 VAL n 1 321 PHE n 1 322 TRP n 1 323 VAL n 1 324 GLU n 1 325 ASP n 1 326 PRO n 1 327 ALA n 1 328 SER n 1 329 SER n 1 330 SER n 1 331 THR n 1 332 GLY n 1 333 SER n 1 334 TRP n 1 335 SER n 1 336 SER n 1 337 ALA n 1 338 GLY n 1 339 CYS n 1 340 GLU n 1 341 THR n 1 342 VAL n 1 343 SER n 1 344 ARG n 1 345 ASP n 1 346 THR n 1 347 GLN n 1 348 THR n 1 349 SER n 1 350 CYS n 1 351 LEU n 1 352 CYS n 1 353 ASN n 1 354 HIS n 1 355 LEU n 2 1 THR n 2 2 TYR n 2 3 PHE n 2 4 ALA n 2 5 VAL n 2 6 LEU n 2 7 MET n 2 8 VAL n 2 9 SER n 3 1 SER n 3 2 VAL n 3 3 PRO n 3 4 THR n 3 5 LYS n 3 6 LEU n 3 7 GLU n 3 8 VAL n 3 9 VAL n 3 10 ALA n 3 11 ALA n 3 12 THR n 3 13 PRO n 3 14 THR n 3 15 SER n 3 16 LEU n 3 17 LEU n 3 18 ILE n 3 19 SER n 3 20 TRP n 3 21 ASP n 3 22 ALA n 3 23 PRO n 3 24 ALA n 3 25 VAL n 3 26 THR n 3 27 VAL n 3 28 ASP n 3 29 HIS n 3 30 TYR n 3 31 VAL n 3 32 ILE n 3 33 THR n 3 34 TYR n 3 35 GLY n 3 36 GLU n 3 37 THR n 3 38 GLY n 3 39 GLY n 3 40 SER n 3 41 PRO n 3 42 TRP n 3 43 SER n 3 44 TRP n 3 45 GLN n 3 46 GLU n 3 47 PHE n 3 48 GLU n 3 49 VAL n 3 50 PRO n 3 51 GLY n 3 52 SER n 3 53 LYS n 3 54 SER n 3 55 THR n 3 56 ALA n 3 57 THR n 3 58 ILE n 3 59 SER n 3 60 GLY n 3 61 LEU n 3 62 LYS n 3 63 PRO n 3 64 GLY n 3 65 VAL n 3 66 ASP n 3 67 TYR n 3 68 THR n 3 69 ILE n 3 70 THR n 3 71 VAL n 3 72 TYR n 3 73 ALA n 3 74 SER n 3 75 SER n 3 76 PHE n 3 77 ASP n 3 78 TRP n 3 79 THR n 3 80 ILE n 3 81 PHE n 3 82 PRO n 3 83 ASN n 3 84 TYR n 3 85 TYR n 3 86 SER n 3 87 SER n 3 88 PRO n 3 89 ILE n 3 90 SER n 3 91 ILE n 3 92 ASN n 3 93 TYR n 3 94 ARG n 3 95 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 355 Mouse ? 'Adgrg1, Cyt28, Gpr56' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Trichoplusia ni' 7111 ? ? ? ? ? ? ? ? ? ? ? 'High Five' ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 9 Mouse ? 'Adgrg1, Cyt28, Gpr56' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Trichoplusia ni' 7111 ? ? ? ? ? ? ? ? ? ? ? 'High Five' ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 95 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP AGRG1_MOUSE Q8K209 ? 1 ;PREDFRFCGQRNQTQQSTLHYDQSSEPHIFVWNTEETLTIRAPFLAAPDIPRFFPEPRGLYHFCLYWSRHTGRLHLRYGK HDYLLSSQASRLLCFQKQEQSLKQGAPLIATSVSSWQIPQNTSLPGAPSFIFSFHNAPHKVSHNASVDMCDLKKELQQLS RYLQHPQKAAKRPTAAFISQQLQSLESKLTSVSFLGDTLSFEEDRVNATVWKLPPTAGLEDLHIHSQKEEEQSEVQAYSL LLPRAVFQQTRGRRRDDAKRLLVVDFSSQALFQDKNSSQVLGEKVLGIVVQNTKVTNLSDPVVLTFQHQPQPKNVTLQCV FWVEDPASSSTGSWSSAGCETVSRDTQTSCLCNHL ; 28 2 UNP AGRG1_MOUSE Q8K209 ? 2 TYFAVLMVS 383 3 PDB 5KVM 5KVM ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5KVM A 1 ? 355 ? Q8K209 28 ? 382 ? 28 382 2 2 5KVM B 1 ? 9 ? Q8K209 383 ? 391 ? 383 391 3 3 5KVM C 1 ? 95 ? 5KVM 5 ? 99 ? 5 99 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KVM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '80 mM sodium acetate pH 4.6, 19.5% glycerol, 16.9% PEG 600, 7.6% PEG 1000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.033 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5KVM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.449 _reflns.d_resolution_low 46.391 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22286 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.7 _reflns.pdbx_Rmerge_I_obs .035 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.75 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half .923 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.45 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.421 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half .663 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5KVM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.449 _refine.ls_d_res_low 46.391 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22242 _refine.ls_number_reflns_R_free 1162 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.89 _refine.ls_percent_reflns_R_free 5.22 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2171 _refine.ls_R_factor_R_free 0.2633 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2146 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.66 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.38 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3576 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 3698 _refine_hist.d_res_high 2.449 _refine_hist.d_res_low 46.391 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 3783 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.611 ? 5182 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.315 ? 2237 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.043 ? 601 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 656 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.4488 2.5602 . . 144 2617 99.00 . . . 0.3463 . 0.2927 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5602 2.6952 . . 140 2617 100.00 . . . 0.3091 . 0.2740 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6952 2.8640 . . 144 2629 100.00 . . . 0.3397 . 0.2542 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8640 3.0851 . . 148 2602 100.00 . . . 0.3267 . 0.2501 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0851 3.3955 . . 145 2624 100.00 . . . 0.2792 . 0.2242 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3955 3.8866 . . 136 2659 100.00 . . . 0.2834 . 0.2225 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8866 4.8958 . . 162 2624 100.00 . . . 0.2410 . 0.1838 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.8958 46.3994 . . 143 2708 100.00 . . . 0.2221 . 0.1982 . . . . . . . . . . # _struct.entry_id 5KVM _struct.title 'Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody' _struct.pdbx_descriptor 'Adhesion G-protein coupled receptor G1, FN3 monobody alpha5' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KVM _struct_keywords.text 'adhesion-GPCR, monobody, PLL, GAIN, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 8 ? J N N 8 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 148 ? HIS A 165 ? ASP A 175 HIS A 192 1 ? 18 HELX_P HELX_P2 AA2 PRO A 166 ? ALA A 169 ? PRO A 193 ALA A 196 5 ? 4 HELX_P HELX_P3 AA3 THR A 174 ? VAL A 192 ? THR A 201 VAL A 219 1 ? 19 HELX_P HELX_P4 AA4 PRO A 214 ? GLU A 220 ? PRO A 241 GLU A 247 5 ? 7 HELX_P HELX_P5 AA5 PRO A 243 ? GLN A 248 ? PRO A 270 GLN A 275 1 ? 6 HELX_P HELX_P6 AA6 VAL A 280 ? GLY A 282 ? VAL A 307 GLY A 309 5 ? 3 HELX_P HELX_P7 AA7 SER C 40 ? TRP C 44 ? SER C 44 TRP C 48 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 64 SG ? ? A CYS 35 A CYS 91 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? A CYS 94 SG ? ? ? 1_555 A CYS 150 SG ? ? A CYS 121 A CYS 177 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? A CYS 319 SG ? ? ? 1_555 A CYS 350 SG ? ? A CYS 346 A CYS 377 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf4 disulf ? ? A CYS 339 SG ? ? ? 1_555 A CYS 352 SG ? ? A CYS 366 A CYS 379 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 12 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 39 A NAG 900 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale2 covale one ? A ASN 121 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 148 D NAG 1 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale3 covale one ? A ASN 207 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 234 E NAG 1 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale4 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale5 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? D NAG 2 D BMA 3 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale6 covale one ? D BMA . O6 ? ? ? 1_555 D BMA . C1 ? ? D BMA 3 D BMA 4 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale7 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 5 ? AA3 ? 7 ? AA4 ? 5 ? AA5 ? 3 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 81 ? SER A 86 ? HIS A 108 SER A 113 AA1 2 ARG A 73 ? TYR A 78 ? ARG A 100 TYR A 105 AA1 3 GLY A 59 ? SER A 68 ? GLY A 86 SER A 95 AA1 4 PHE A 5 ? GLN A 13 ? PHE A 32 GLN A 40 AA1 5 ILE A 109 ? SER A 115 ? ILE A 136 SER A 142 AA1 6 THR A 122 ? SER A 123 ? THR A 149 SER A 150 AA2 1 THR A 18 ? GLN A 23 ? THR A 45 GLN A 50 AA2 2 THR A 37 ? ALA A 42 ? THR A 64 ALA A 69 AA2 3 ILE A 29 ? ASN A 33 ? ILE A 56 ASN A 60 AA2 4 SER A 129 ? SER A 133 ? SER A 156 SER A 160 AA2 5 LYS A 97 ? GLU A 99 ? LYS A 124 GLU A 126 AA3 1 THR A 198 ? GLU A 203 ? THR A 225 GLU A 230 AA3 2 VAL A 206 ? LYS A 212 ? VAL A 233 LYS A 239 AA3 3 ARG A 260 ? SER A 267 ? ARG A 287 SER A 294 AA3 4 LYS A 284 ? VAL A 290 ? LYS A 311 VAL A 317 AA3 5 TYR B 2 ? VAL B 8 ? TYR B 384 VAL B 390 AA3 6 THR A 316 ? VAL A 323 ? THR A 343 VAL A 350 AA3 7 SER A 333 ? SER A 335 ? SER A 360 SER A 362 AA4 1 LEU A 222 ? HIS A 225 ? LEU A 249 HIS A 252 AA4 2 VAL A 235 ? LEU A 242 ? VAL A 262 LEU A 269 AA4 3 VAL A 302 ? HIS A 308 ? VAL A 329 HIS A 335 AA4 4 GLN A 347 ? CYS A 352 ? GLN A 374 CYS A 379 AA4 5 CYS A 339 ? SER A 343 ? CYS A 366 SER A 370 AA5 1 LEU C 6 ? ALA C 11 ? LEU C 10 ALA C 15 AA5 2 LEU C 16 ? TRP C 20 ? LEU C 20 TRP C 24 AA5 3 THR C 55 ? ILE C 58 ? THR C 59 ILE C 62 AA6 1 GLN C 45 ? PRO C 50 ? GLN C 49 PRO C 54 AA6 2 HIS C 29 ? GLU C 36 ? HIS C 33 GLU C 40 AA6 3 TYR C 67 ? SER C 74 ? TYR C 71 SER C 78 AA6 4 ILE C 89 ? TYR C 93 ? ILE C 93 TYR C 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TYR A 83 ? O TYR A 110 N LEU A 76 ? N LEU A 103 AA1 2 3 O HIS A 75 ? O HIS A 102 N TYR A 66 ? N TYR A 93 AA1 3 4 O LEU A 65 ? O LEU A 92 N PHE A 7 ? N PHE A 34 AA1 4 5 N GLN A 10 ? N GLN A 37 O ILE A 109 ? O ILE A 136 AA1 5 6 N VAL A 113 ? N VAL A 140 O THR A 122 ? O THR A 149 AA2 1 2 N HIS A 20 ? N HIS A 47 O ILE A 40 ? O ILE A 67 AA2 2 3 O THR A 39 ? O THR A 66 N TRP A 32 ? N TRP A 59 AA2 3 4 N VAL A 31 ? N VAL A 58 O PHE A 130 ? O PHE A 157 AA2 4 5 O SER A 133 ? O SER A 160 N LYS A 97 ? N LYS A 124 AA3 1 2 N PHE A 201 ? N PHE A 228 O ALA A 208 ? O ALA A 235 AA3 2 3 N ASN A 207 ? N ASN A 234 O ASP A 265 ? O ASP A 292 AA3 3 4 N VAL A 264 ? N VAL A 291 O GLY A 287 ? O GLY A 314 AA3 4 5 N LEU A 286 ? N LEU A 313 O PHE B 3 ? O PHE B 385 AA3 5 6 O VAL B 8 ? O VAL B 390 N THR A 316 ? N THR A 343 AA3 6 7 N PHE A 321 ? N PHE A 348 O SER A 335 ? O SER A 362 AA4 1 2 N LEU A 222 ? N LEU A 249 O LEU A 242 ? O LEU A 269 AA4 2 3 N GLN A 236 ? N GLN A 263 O GLN A 307 ? O GLN A 334 AA4 3 4 N LEU A 304 ? N LEU A 331 O CYS A 350 ? O CYS A 377 AA4 4 5 O LEU A 351 ? O LEU A 378 N GLU A 340 ? N GLU A 367 AA5 1 2 N GLU C 7 ? N GLU C 11 O SER C 19 ? O SER C 23 AA5 2 3 N LEU C 16 ? N LEU C 20 O ILE C 58 ? O ILE C 62 AA6 1 2 O VAL C 49 ? O VAL C 53 N TYR C 30 ? N TYR C 34 AA6 2 3 N VAL C 31 ? N VAL C 35 O TYR C 72 ? O TYR C 76 AA6 3 4 N TYR C 67 ? N TYR C 71 O TYR C 93 ? O TYR C 97 # _atom_sites.entry_id 5KVM _atom_sites.fract_transf_matrix[1][1] 0.008310 _atom_sites.fract_transf_matrix[1][2] 0.004798 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009596 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013727 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 28 28 PRO PRO A . n A 1 2 ARG 2 29 29 ARG ARG A . n A 1 3 GLU 3 30 30 GLU GLU A . n A 1 4 ASP 4 31 31 ASP ASP A . n A 1 5 PHE 5 32 32 PHE PHE A . n A 1 6 ARG 6 33 33 ARG ARG A . n A 1 7 PHE 7 34 34 PHE PHE A . n A 1 8 CYS 8 35 35 CYS CYS A . n A 1 9 GLY 9 36 36 GLY GLY A . n A 1 10 GLN 10 37 37 GLN GLN A . n A 1 11 ARG 11 38 38 ARG ARG A . n A 1 12 ASN 12 39 39 ASN ASN A . n A 1 13 GLN 13 40 40 GLN GLN A . n A 1 14 THR 14 41 41 THR THR A . n A 1 15 GLN 15 42 42 GLN GLN A . n A 1 16 GLN 16 43 43 GLN GLN A . n A 1 17 SER 17 44 44 SER SER A . n A 1 18 THR 18 45 45 THR THR A . n A 1 19 LEU 19 46 46 LEU LEU A . n A 1 20 HIS 20 47 47 HIS HIS A . n A 1 21 TYR 21 48 48 TYR TYR A . n A 1 22 ASP 22 49 49 ASP ASP A . n A 1 23 GLN 23 50 50 GLN GLN A . n A 1 24 SER 24 51 51 SER SER A . n A 1 25 SER 25 52 52 SER SER A . n A 1 26 GLU 26 53 53 GLU GLU A . n A 1 27 PRO 27 54 54 PRO PRO A . n A 1 28 HIS 28 55 55 HIS HIS A . n A 1 29 ILE 29 56 56 ILE ILE A . n A 1 30 PHE 30 57 57 PHE PHE A . n A 1 31 VAL 31 58 58 VAL VAL A . n A 1 32 TRP 32 59 59 TRP TRP A . n A 1 33 ASN 33 60 60 ASN ASN A . n A 1 34 THR 34 61 61 THR THR A . n A 1 35 GLU 35 62 62 GLU GLU A . n A 1 36 GLU 36 63 63 GLU GLU A . n A 1 37 THR 37 64 64 THR THR A . n A 1 38 LEU 38 65 65 LEU LEU A . n A 1 39 THR 39 66 66 THR THR A . n A 1 40 ILE 40 67 67 ILE ILE A . n A 1 41 ARG 41 68 68 ARG ARG A . n A 1 42 ALA 42 69 69 ALA ALA A . n A 1 43 PRO 43 70 70 PRO PRO A . n A 1 44 PHE 44 71 71 PHE PHE A . n A 1 45 LEU 45 72 72 LEU LEU A . n A 1 46 ALA 46 73 73 ALA ALA A . n A 1 47 ALA 47 74 74 ALA ALA A . n A 1 48 PRO 48 75 75 PRO PRO A . n A 1 49 ASP 49 76 76 ASP ASP A . n A 1 50 ILE 50 77 77 ILE ILE A . n A 1 51 PRO 51 78 78 PRO PRO A . n A 1 52 ARG 52 79 79 ARG ARG A . n A 1 53 PHE 53 80 80 PHE PHE A . n A 1 54 PHE 54 81 81 PHE PHE A . n A 1 55 PRO 55 82 82 PRO PRO A . n A 1 56 GLU 56 83 83 GLU GLU A . n A 1 57 PRO 57 84 84 PRO PRO A . n A 1 58 ARG 58 85 85 ARG ARG A . n A 1 59 GLY 59 86 86 GLY GLY A . n A 1 60 LEU 60 87 87 LEU LEU A . n A 1 61 TYR 61 88 88 TYR TYR A . n A 1 62 HIS 62 89 89 HIS HIS A . n A 1 63 PHE 63 90 90 PHE PHE A . n A 1 64 CYS 64 91 91 CYS CYS A . n A 1 65 LEU 65 92 92 LEU LEU A . n A 1 66 TYR 66 93 93 TYR TYR A . n A 1 67 TRP 67 94 94 TRP TRP A . n A 1 68 SER 68 95 95 SER SER A . n A 1 69 ARG 69 96 96 ARG ARG A . n A 1 70 HIS 70 97 97 HIS HIS A . n A 1 71 THR 71 98 98 THR THR A . n A 1 72 GLY 72 99 99 GLY GLY A . n A 1 73 ARG 73 100 100 ARG ARG A . n A 1 74 LEU 74 101 101 LEU LEU A . n A 1 75 HIS 75 102 102 HIS HIS A . n A 1 76 LEU 76 103 103 LEU LEU A . n A 1 77 ARG 77 104 104 ARG ARG A . n A 1 78 TYR 78 105 105 TYR TYR A . n A 1 79 GLY 79 106 106 GLY GLY A . n A 1 80 LYS 80 107 107 LYS LYS A . n A 1 81 HIS 81 108 108 HIS HIS A . n A 1 82 ASP 82 109 109 ASP ASP A . n A 1 83 TYR 83 110 110 TYR TYR A . n A 1 84 LEU 84 111 111 LEU LEU A . n A 1 85 LEU 85 112 112 LEU LEU A . n A 1 86 SER 86 113 113 SER SER A . n A 1 87 SER 87 114 114 SER SER A . n A 1 88 GLN 88 115 115 GLN GLN A . n A 1 89 ALA 89 116 116 ALA ALA A . n A 1 90 SER 90 117 117 SER SER A . n A 1 91 ARG 91 118 118 ARG ARG A . n A 1 92 LEU 92 119 119 LEU LEU A . n A 1 93 LEU 93 120 120 LEU LEU A . n A 1 94 CYS 94 121 121 CYS CYS A . n A 1 95 PHE 95 122 122 PHE PHE A . n A 1 96 GLN 96 123 123 GLN GLN A . n A 1 97 LYS 97 124 124 LYS LYS A . n A 1 98 GLN 98 125 125 GLN GLN A . n A 1 99 GLU 99 126 126 GLU GLU A . n A 1 100 GLN 100 127 127 GLN GLN A . n A 1 101 SER 101 128 128 SER SER A . n A 1 102 LEU 102 129 129 LEU LEU A . n A 1 103 LYS 103 130 130 LYS LYS A . n A 1 104 GLN 104 131 131 GLN GLN A . n A 1 105 GLY 105 132 132 GLY GLY A . n A 1 106 ALA 106 133 133 ALA ALA A . n A 1 107 PRO 107 134 134 PRO PRO A . n A 1 108 LEU 108 135 135 LEU LEU A . n A 1 109 ILE 109 136 136 ILE ILE A . n A 1 110 ALA 110 137 137 ALA ALA A . n A 1 111 THR 111 138 138 THR THR A . n A 1 112 SER 112 139 139 SER SER A . n A 1 113 VAL 113 140 140 VAL VAL A . n A 1 114 SER 114 141 141 SER SER A . n A 1 115 SER 115 142 142 SER SER A . n A 1 116 TRP 116 143 143 TRP TRP A . n A 1 117 GLN 117 144 144 GLN GLN A . n A 1 118 ILE 118 145 145 ILE ILE A . n A 1 119 PRO 119 146 146 PRO PRO A . n A 1 120 GLN 120 147 147 GLN GLN A . n A 1 121 ASN 121 148 148 ASN ASN A . n A 1 122 THR 122 149 149 THR THR A . n A 1 123 SER 123 150 150 SER SER A . n A 1 124 LEU 124 151 151 LEU LEU A . n A 1 125 PRO 125 152 152 PRO PRO A . n A 1 126 GLY 126 153 153 GLY GLY A . n A 1 127 ALA 127 154 154 ALA ALA A . n A 1 128 PRO 128 155 155 PRO PRO A . n A 1 129 SER 129 156 156 SER SER A . n A 1 130 PHE 130 157 157 PHE PHE A . n A 1 131 ILE 131 158 158 ILE ILE A . n A 1 132 PHE 132 159 159 PHE PHE A . n A 1 133 SER 133 160 160 SER SER A . n A 1 134 PHE 134 161 161 PHE PHE A . n A 1 135 HIS 135 162 162 HIS HIS A . n A 1 136 ASN 136 163 163 ASN ASN A . n A 1 137 ALA 137 164 164 ALA ALA A . n A 1 138 PRO 138 165 165 PRO PRO A . n A 1 139 HIS 139 166 166 HIS HIS A . n A 1 140 LYS 140 167 167 LYS LYS A . n A 1 141 VAL 141 168 168 VAL VAL A . n A 1 142 SER 142 169 169 SER SER A . n A 1 143 HIS 143 170 170 HIS HIS A . n A 1 144 ASN 144 171 171 ASN ASN A . n A 1 145 ALA 145 172 172 ALA ALA A . n A 1 146 SER 146 173 173 SER SER A . n A 1 147 VAL 147 174 174 VAL VAL A . n A 1 148 ASP 148 175 175 ASP ASP A . n A 1 149 MET 149 176 176 MET MET A . n A 1 150 CYS 150 177 177 CYS CYS A . n A 1 151 ASP 151 178 178 ASP ASP A . n A 1 152 LEU 152 179 179 LEU LEU A . n A 1 153 LYS 153 180 180 LYS LYS A . n A 1 154 LYS 154 181 181 LYS LYS A . n A 1 155 GLU 155 182 182 GLU GLU A . n A 1 156 LEU 156 183 183 LEU LEU A . n A 1 157 GLN 157 184 184 GLN GLN A . n A 1 158 GLN 158 185 185 GLN GLN A . n A 1 159 LEU 159 186 186 LEU LEU A . n A 1 160 SER 160 187 187 SER SER A . n A 1 161 ARG 161 188 188 ARG ARG A . n A 1 162 TYR 162 189 189 TYR TYR A . n A 1 163 LEU 163 190 190 LEU LEU A . n A 1 164 GLN 164 191 191 GLN GLN A . n A 1 165 HIS 165 192 192 HIS HIS A . n A 1 166 PRO 166 193 193 PRO PRO A . n A 1 167 GLN 167 194 194 GLN GLN A . n A 1 168 LYS 168 195 195 LYS LYS A . n A 1 169 ALA 169 196 196 ALA ALA A . n A 1 170 ALA 170 197 197 ALA ALA A . n A 1 171 LYS 171 198 198 LYS LYS A . n A 1 172 ARG 172 199 199 ARG ARG A . n A 1 173 PRO 173 200 200 PRO PRO A . n A 1 174 THR 174 201 201 THR THR A . n A 1 175 ALA 175 202 202 ALA ALA A . n A 1 176 ALA 176 203 203 ALA ALA A . n A 1 177 PHE 177 204 204 PHE PHE A . n A 1 178 ILE 178 205 205 ILE ILE A . n A 1 179 SER 179 206 206 SER SER A . n A 1 180 GLN 180 207 207 GLN GLN A . n A 1 181 GLN 181 208 208 GLN GLN A . n A 1 182 LEU 182 209 209 LEU LEU A . n A 1 183 GLN 183 210 210 GLN GLN A . n A 1 184 SER 184 211 211 SER SER A . n A 1 185 LEU 185 212 212 LEU LEU A . n A 1 186 GLU 186 213 213 GLU GLU A . n A 1 187 SER 187 214 214 SER SER A . n A 1 188 LYS 188 215 215 LYS LYS A . n A 1 189 LEU 189 216 216 LEU LEU A . n A 1 190 THR 190 217 217 THR THR A . n A 1 191 SER 191 218 218 SER SER A . n A 1 192 VAL 192 219 219 VAL VAL A . n A 1 193 SER 193 220 220 SER SER A . n A 1 194 PHE 194 221 221 PHE PHE A . n A 1 195 LEU 195 222 222 LEU LEU A . n A 1 196 GLY 196 223 223 GLY GLY A . n A 1 197 ASP 197 224 224 ASP ASP A . n A 1 198 THR 198 225 225 THR THR A . n A 1 199 LEU 199 226 226 LEU LEU A . n A 1 200 SER 200 227 227 SER SER A . n A 1 201 PHE 201 228 228 PHE PHE A . n A 1 202 GLU 202 229 229 GLU GLU A . n A 1 203 GLU 203 230 230 GLU GLU A . n A 1 204 ASP 204 231 231 ASP ASP A . n A 1 205 ARG 205 232 232 ARG ARG A . n A 1 206 VAL 206 233 233 VAL VAL A . n A 1 207 ASN 207 234 234 ASN ASN A . n A 1 208 ALA 208 235 235 ALA ALA A . n A 1 209 THR 209 236 236 THR THR A . n A 1 210 VAL 210 237 237 VAL VAL A . n A 1 211 TRP 211 238 238 TRP TRP A . n A 1 212 LYS 212 239 239 LYS LYS A . n A 1 213 LEU 213 240 240 LEU LEU A . n A 1 214 PRO 214 241 241 PRO PRO A . n A 1 215 PRO 215 242 242 PRO PRO A . n A 1 216 THR 216 243 243 THR THR A . n A 1 217 ALA 217 244 244 ALA ALA A . n A 1 218 GLY 218 245 245 GLY GLY A . n A 1 219 LEU 219 246 246 LEU LEU A . n A 1 220 GLU 220 247 247 GLU GLU A . n A 1 221 ASP 221 248 248 ASP ASP A . n A 1 222 LEU 222 249 249 LEU LEU A . n A 1 223 HIS 223 250 250 HIS HIS A . n A 1 224 ILE 224 251 251 ILE ILE A . n A 1 225 HIS 225 252 252 HIS HIS A . n A 1 226 SER 226 253 253 SER SER A . n A 1 227 GLN 227 254 254 GLN GLN A . n A 1 228 LYS 228 255 255 LYS LYS A . n A 1 229 GLU 229 256 256 GLU GLU A . n A 1 230 GLU 230 257 257 GLU GLU A . n A 1 231 GLU 231 258 258 GLU GLU A . n A 1 232 GLN 232 259 259 GLN GLN A . n A 1 233 SER 233 260 260 SER SER A . n A 1 234 GLU 234 261 261 GLU GLU A . n A 1 235 VAL 235 262 262 VAL VAL A . n A 1 236 GLN 236 263 263 GLN GLN A . n A 1 237 ALA 237 264 264 ALA ALA A . n A 1 238 TYR 238 265 265 TYR TYR A . n A 1 239 SER 239 266 266 SER SER A . n A 1 240 LEU 240 267 267 LEU LEU A . n A 1 241 LEU 241 268 268 LEU LEU A . n A 1 242 LEU 242 269 269 LEU LEU A . n A 1 243 PRO 243 270 270 PRO PRO A . n A 1 244 ARG 244 271 271 ARG ARG A . n A 1 245 ALA 245 272 272 ALA ALA A . n A 1 246 VAL 246 273 273 VAL VAL A . n A 1 247 PHE 247 274 274 PHE PHE A . n A 1 248 GLN 248 275 275 GLN GLN A . n A 1 249 GLN 249 276 276 GLN GLN A . n A 1 250 THR 250 277 277 THR THR A . n A 1 251 ARG 251 278 278 ARG ARG A . n A 1 252 GLY 252 279 279 GLY GLY A . n A 1 253 ARG 253 280 280 ARG ARG A . n A 1 254 ARG 254 281 281 ARG ARG A . n A 1 255 ARG 255 282 282 ARG ARG A . n A 1 256 ASP 256 283 283 ASP ASP A . n A 1 257 ASP 257 284 284 ASP ASP A . n A 1 258 ALA 258 285 285 ALA ALA A . n A 1 259 LYS 259 286 286 LYS LYS A . n A 1 260 ARG 260 287 287 ARG ARG A . n A 1 261 LEU 261 288 288 LEU LEU A . n A 1 262 LEU 262 289 289 LEU LEU A . n A 1 263 VAL 263 290 290 VAL VAL A . n A 1 264 VAL 264 291 291 VAL VAL A . n A 1 265 ASP 265 292 292 ASP ASP A . n A 1 266 PHE 266 293 293 PHE PHE A . n A 1 267 SER 267 294 294 SER SER A . n A 1 268 SER 268 295 295 SER SER A . n A 1 269 GLN 269 296 296 GLN GLN A . n A 1 270 ALA 270 297 297 ALA ALA A . n A 1 271 LEU 271 298 298 LEU LEU A . n A 1 272 PHE 272 299 299 PHE PHE A . n A 1 273 GLN 273 300 300 GLN GLN A . n A 1 274 ASP 274 301 301 ASP ASP A . n A 1 275 LYS 275 302 302 LYS LYS A . n A 1 276 ASN 276 303 303 ASN ASN A . n A 1 277 SER 277 304 304 SER SER A . n A 1 278 SER 278 305 305 SER SER A . n A 1 279 GLN 279 306 306 GLN GLN A . n A 1 280 VAL 280 307 307 VAL VAL A . n A 1 281 LEU 281 308 308 LEU LEU A . n A 1 282 GLY 282 309 309 GLY GLY A . n A 1 283 GLU 283 310 310 GLU GLU A . n A 1 284 LYS 284 311 311 LYS LYS A . n A 1 285 VAL 285 312 312 VAL VAL A . n A 1 286 LEU 286 313 313 LEU LEU A . n A 1 287 GLY 287 314 314 GLY GLY A . n A 1 288 ILE 288 315 315 ILE ILE A . n A 1 289 VAL 289 316 316 VAL VAL A . n A 1 290 VAL 290 317 317 VAL VAL A . n A 1 291 GLN 291 318 318 GLN GLN A . n A 1 292 ASN 292 319 319 ASN ASN A . n A 1 293 THR 293 320 320 THR THR A . n A 1 294 LYS 294 321 321 LYS LYS A . n A 1 295 VAL 295 322 322 VAL VAL A . n A 1 296 THR 296 323 323 THR THR A . n A 1 297 ASN 297 324 324 ASN ASN A . n A 1 298 LEU 298 325 325 LEU LEU A . n A 1 299 SER 299 326 326 SER SER A . n A 1 300 ASP 300 327 327 ASP ASP A . n A 1 301 PRO 301 328 328 PRO PRO A . n A 1 302 VAL 302 329 329 VAL VAL A . n A 1 303 VAL 303 330 330 VAL VAL A . n A 1 304 LEU 304 331 331 LEU LEU A . n A 1 305 THR 305 332 332 THR THR A . n A 1 306 PHE 306 333 333 PHE PHE A . n A 1 307 GLN 307 334 334 GLN GLN A . n A 1 308 HIS 308 335 335 HIS HIS A . n A 1 309 GLN 309 336 336 GLN GLN A . n A 1 310 PRO 310 337 337 PRO PRO A . n A 1 311 GLN 311 338 338 GLN GLN A . n A 1 312 PRO 312 339 339 PRO PRO A . n A 1 313 LYS 313 340 340 LYS LYS A . n A 1 314 ASN 314 341 341 ASN ASN A . n A 1 315 VAL 315 342 342 VAL VAL A . n A 1 316 THR 316 343 343 THR THR A . n A 1 317 LEU 317 344 344 LEU LEU A . n A 1 318 GLN 318 345 345 GLN GLN A . n A 1 319 CYS 319 346 346 CYS CYS A . n A 1 320 VAL 320 347 347 VAL VAL A . n A 1 321 PHE 321 348 348 PHE PHE A . n A 1 322 TRP 322 349 349 TRP TRP A . n A 1 323 VAL 323 350 350 VAL VAL A . n A 1 324 GLU 324 351 351 GLU GLU A . n A 1 325 ASP 325 352 352 ASP ASP A . n A 1 326 PRO 326 353 353 PRO PRO A . n A 1 327 ALA 327 354 354 ALA ALA A . n A 1 328 SER 328 355 355 SER SER A . n A 1 329 SER 329 356 356 SER SER A . n A 1 330 SER 330 357 357 SER SER A . n A 1 331 THR 331 358 358 THR THR A . n A 1 332 GLY 332 359 359 GLY GLY A . n A 1 333 SER 333 360 360 SER SER A . n A 1 334 TRP 334 361 361 TRP TRP A . n A 1 335 SER 335 362 362 SER SER A . n A 1 336 SER 336 363 363 SER SER A . n A 1 337 ALA 337 364 364 ALA ALA A . n A 1 338 GLY 338 365 365 GLY GLY A . n A 1 339 CYS 339 366 366 CYS CYS A . n A 1 340 GLU 340 367 367 GLU GLU A . n A 1 341 THR 341 368 368 THR THR A . n A 1 342 VAL 342 369 369 VAL VAL A . n A 1 343 SER 343 370 370 SER SER A . n A 1 344 ARG 344 371 371 ARG ARG A . n A 1 345 ASP 345 372 372 ASP ASP A . n A 1 346 THR 346 373 373 THR THR A . n A 1 347 GLN 347 374 374 GLN GLN A . n A 1 348 THR 348 375 375 THR THR A . n A 1 349 SER 349 376 376 SER SER A . n A 1 350 CYS 350 377 377 CYS CYS A . n A 1 351 LEU 351 378 378 LEU LEU A . n A 1 352 CYS 352 379 379 CYS CYS A . n A 1 353 ASN 353 380 380 ASN ASN A . n A 1 354 HIS 354 381 381 HIS HIS A . n A 1 355 LEU 355 382 382 LEU LEU A . n B 2 1 THR 1 383 383 THR THR B . n B 2 2 TYR 2 384 384 TYR TYR B . n B 2 3 PHE 3 385 385 PHE PHE B . n B 2 4 ALA 4 386 386 ALA ALA B . n B 2 5 VAL 5 387 387 VAL VAL B . n B 2 6 LEU 6 388 388 LEU LEU B . n B 2 7 MET 7 389 389 MET MET B . n B 2 8 VAL 8 390 390 VAL VAL B . n B 2 9 SER 9 391 391 SER SER B . n C 3 1 SER 1 5 5 SER SER C . n C 3 2 VAL 2 6 6 VAL VAL C . n C 3 3 PRO 3 7 7 PRO PRO C . n C 3 4 THR 4 8 8 THR THR C . n C 3 5 LYS 5 9 9 LYS LYS C . n C 3 6 LEU 6 10 10 LEU LEU C . n C 3 7 GLU 7 11 11 GLU GLU C . n C 3 8 VAL 8 12 12 VAL VAL C . n C 3 9 VAL 9 13 13 VAL VAL C . n C 3 10 ALA 10 14 14 ALA ALA C . n C 3 11 ALA 11 15 15 ALA ALA C . n C 3 12 THR 12 16 16 THR THR C . n C 3 13 PRO 13 17 17 PRO PRO C . n C 3 14 THR 14 18 18 THR THR C . n C 3 15 SER 15 19 19 SER SER C . n C 3 16 LEU 16 20 20 LEU LEU C . n C 3 17 LEU 17 21 21 LEU LEU C . n C 3 18 ILE 18 22 22 ILE ILE C . n C 3 19 SER 19 23 23 SER SER C . n C 3 20 TRP 20 24 24 TRP TRP C . n C 3 21 ASP 21 25 25 ASP ASP C . n C 3 22 ALA 22 26 26 ALA ALA C . n C 3 23 PRO 23 27 27 PRO PRO C . n C 3 24 ALA 24 28 28 ALA ALA C . n C 3 25 VAL 25 29 29 VAL VAL C . n C 3 26 THR 26 30 30 THR THR C . n C 3 27 VAL 27 31 31 VAL VAL C . n C 3 28 ASP 28 32 32 ASP ASP C . n C 3 29 HIS 29 33 33 HIS HIS C . n C 3 30 TYR 30 34 34 TYR TYR C . n C 3 31 VAL 31 35 35 VAL VAL C . n C 3 32 ILE 32 36 36 ILE ILE C . n C 3 33 THR 33 37 37 THR THR C . n C 3 34 TYR 34 38 38 TYR TYR C . n C 3 35 GLY 35 39 39 GLY GLY C . n C 3 36 GLU 36 40 40 GLU GLU C . n C 3 37 THR 37 41 41 THR THR C . n C 3 38 GLY 38 42 42 GLY GLY C . n C 3 39 GLY 39 43 43 GLY GLY C . n C 3 40 SER 40 44 44 SER SER C . n C 3 41 PRO 41 45 45 PRO PRO C . n C 3 42 TRP 42 46 46 TRP TRP C . n C 3 43 SER 43 47 47 SER SER C . n C 3 44 TRP 44 48 48 TRP TRP C . n C 3 45 GLN 45 49 49 GLN GLN C . n C 3 46 GLU 46 50 50 GLU GLU C . n C 3 47 PHE 47 51 51 PHE PHE C . n C 3 48 GLU 48 52 52 GLU GLU C . n C 3 49 VAL 49 53 53 VAL VAL C . n C 3 50 PRO 50 54 54 PRO PRO C . n C 3 51 GLY 51 55 55 GLY GLY C . n C 3 52 SER 52 56 56 SER SER C . n C 3 53 LYS 53 57 57 LYS LYS C . n C 3 54 SER 54 58 58 SER SER C . n C 3 55 THR 55 59 59 THR THR C . n C 3 56 ALA 56 60 60 ALA ALA C . n C 3 57 THR 57 61 61 THR THR C . n C 3 58 ILE 58 62 62 ILE ILE C . n C 3 59 SER 59 63 63 SER SER C . n C 3 60 GLY 60 64 64 GLY GLY C . n C 3 61 LEU 61 65 65 LEU LEU C . n C 3 62 LYS 62 66 66 LYS LYS C . n C 3 63 PRO 63 67 67 PRO PRO C . n C 3 64 GLY 64 68 68 GLY GLY C . n C 3 65 VAL 65 69 69 VAL VAL C . n C 3 66 ASP 66 70 70 ASP ASP C . n C 3 67 TYR 67 71 71 TYR TYR C . n C 3 68 THR 68 72 72 THR THR C . n C 3 69 ILE 69 73 73 ILE ILE C . n C 3 70 THR 70 74 74 THR THR C . n C 3 71 VAL 71 75 75 VAL VAL C . n C 3 72 TYR 72 76 76 TYR TYR C . n C 3 73 ALA 73 77 77 ALA ALA C . n C 3 74 SER 74 78 78 SER SER C . n C 3 75 SER 75 79 79 SER SER C . n C 3 76 PHE 76 80 80 PHE PHE C . n C 3 77 ASP 77 81 81 ASP ASP C . n C 3 78 TRP 78 82 82 TRP TRP C . n C 3 79 THR 79 83 83 THR THR C . n C 3 80 ILE 80 84 84 ILE ILE C . n C 3 81 PHE 81 85 85 PHE PHE C . n C 3 82 PRO 82 86 86 PRO PRO C . n C 3 83 ASN 83 87 87 ASN ASN C . n C 3 84 TYR 84 88 88 TYR TYR C . n C 3 85 TYR 85 89 89 TYR TYR C . n C 3 86 SER 86 90 90 SER SER C . n C 3 87 SER 87 91 91 SER SER C . n C 3 88 PRO 88 92 92 PRO PRO C . n C 3 89 ILE 89 93 93 ILE ILE C . n C 3 90 SER 90 94 94 SER SER C . n C 3 91 ILE 91 95 95 ILE ILE C . n C 3 92 ASN 92 96 96 ASN ASN C . n C 3 93 TYR 93 97 97 TYR TYR C . n C 3 94 ARG 94 98 98 ARG ARG C . n C 3 95 THR 95 99 99 THR THR C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG 1 900 900 NAG NAG A . G 7 GOL 1 907 907 GOL GOL A . H 8 HOH 1 1001 10 HOH HOH A . H 8 HOH 2 1002 6 HOH HOH A . H 8 HOH 3 1003 13 HOH HOH A . H 8 HOH 4 1004 16 HOH HOH A . H 8 HOH 5 1005 18 HOH HOH A . H 8 HOH 6 1006 11 HOH HOH A . H 8 HOH 7 1007 2 HOH HOH A . H 8 HOH 8 1008 20 HOH HOH A . H 8 HOH 9 1009 5 HOH HOH A . H 8 HOH 10 1010 23 HOH HOH A . H 8 HOH 11 1011 12 HOH HOH A . H 8 HOH 12 1012 8 HOH HOH A . I 8 HOH 1 401 17 HOH HOH B . J 8 HOH 1 101 14 HOH HOH C . J 8 HOH 2 102 3 HOH HOH C . J 8 HOH 3 103 7 HOH HOH C . J 8 HOH 4 104 19 HOH HOH C . J 8 HOH 5 105 4 HOH HOH C . J 8 HOH 6 106 1 HOH HOH C . J 8 HOH 7 107 22 HOH HOH C . J 8 HOH 8 108 9 HOH HOH C . J 8 HOH 9 109 24 HOH HOH C . J 8 HOH 10 110 15 HOH HOH C . J 8 HOH 11 111 21 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6620 ? 1 MORE -7 ? 1 'SSA (A^2)' 22360 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-28 2 'Structure model' 1 1 2017-09-27 3 'Structure model' 1 2 2018-04-18 4 'Structure model' 1 3 2019-12-25 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 4 'Structure model' 'Author supporting evidence' 7 5 'Structure model' 'Atomic model' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' pdbx_audit_support 3 2 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' citation 5 3 'Structure model' citation_author 6 4 'Structure model' pdbx_audit_support 7 5 'Structure model' atom_site 8 5 'Structure model' chem_comp 9 5 'Structure model' entity 10 5 'Structure model' pdbx_branch_scheme 11 5 'Structure model' pdbx_chem_comp_identifier 12 5 'Structure model' pdbx_entity_branch 13 5 'Structure model' pdbx_entity_branch_descriptor 14 5 'Structure model' pdbx_entity_branch_link 15 5 'Structure model' pdbx_entity_branch_list 16 5 'Structure model' pdbx_entity_nonpoly 17 5 'Structure model' pdbx_nonpoly_scheme 18 5 'Structure model' pdbx_struct_assembly_gen 19 5 'Structure model' struct_asym 20 5 'Structure model' struct_conn 21 5 'Structure model' struct_site 22 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_pdbx_audit_support.funding_organization' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 3 'Structure model' '_citation.journal_id_ISSN' 5 3 'Structure model' '_citation.pdbx_database_id_PubMed' 6 3 'Structure model' '_citation.title' 7 3 'Structure model' '_citation_author.name' 8 4 'Structure model' '_pdbx_audit_support.funding_organization' 9 5 'Structure model' '_atom_site.B_iso_or_equiv' 10 5 'Structure model' '_atom_site.Cartn_x' 11 5 'Structure model' '_atom_site.Cartn_y' 12 5 'Structure model' '_atom_site.Cartn_z' 13 5 'Structure model' '_atom_site.auth_asym_id' 14 5 'Structure model' '_atom_site.auth_atom_id' 15 5 'Structure model' '_atom_site.auth_comp_id' 16 5 'Structure model' '_atom_site.auth_seq_id' 17 5 'Structure model' '_atom_site.label_asym_id' 18 5 'Structure model' '_atom_site.label_atom_id' 19 5 'Structure model' '_atom_site.label_comp_id' 20 5 'Structure model' '_atom_site.label_entity_id' 21 5 'Structure model' '_atom_site.type_symbol' 22 5 'Structure model' '_chem_comp.name' 23 5 'Structure model' '_chem_comp.type' 24 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 25 5 'Structure model' '_struct_conn.pdbx_role' 26 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 35.0126 17.3927 19.4839 0.6885 0.6684 0.5559 0.2151 -0.0055 0.0083 7.0355 4.7209 4.5864 -0.7876 -1.1051 0.9204 -0.0373 0.6548 -0.0504 0.1365 -0.0729 0.3793 -0.0629 -0.9045 0.0485 'X-RAY DIFFRACTION' 2 ? refined 50.6748 12.5054 -15.9711 0.9274 0.4696 0.5396 0.3188 -0.1937 -0.0854 2.5490 2.4503 5.4765 0.1498 0.5413 1.2037 -0.1029 0.3214 0.2804 -0.4666 -0.3331 0.3630 -1.0900 -0.7760 0.2165 'X-RAY DIFFRACTION' 3 ? refined 55.7722 15.4427 -24.6810 1.2221 0.5103 0.6703 0.2346 -0.2258 -0.0478 5.9618 3.5443 7.0465 -0.1495 -2.3020 -0.8512 0.4870 0.5650 -0.2391 -0.5418 -0.2884 -0.1913 -1.7588 -0.1374 -0.0625 'X-RAY DIFFRACTION' 4 ? refined 71.5185 7.2707 11.6813 0.9129 0.7348 0.9064 -0.0923 0.0979 0.6588 4.7600 4.9559 7.2750 -4.6158 1.7702 0.0337 0.5855 0.3476 0.2598 -2.0944 0.8379 0.6415 0.3367 -0.1174 -0.1167 'X-RAY DIFFRACTION' 5 ? refined 67.8725 12.2997 20.3869 0.9115 0.3851 0.4853 -0.0586 -0.1261 -0.0094 4.0852 5.6740 6.1394 0.4313 -2.7213 -3.4267 -0.1665 -0.4888 0.1252 0.4259 -0.1323 0.0630 -1.0742 0.6129 0.2897 'X-RAY DIFFRACTION' 6 ? refined 55.1252 11.8808 20.8186 0.9964 0.3448 0.5865 0.0716 -0.0339 -0.0948 5.1246 1.5763 0.8735 -0.4077 -0.5343 -0.9947 -0.3351 -0.2492 -0.8920 0.4297 0.3397 0.1122 -1.2428 -0.3034 -0.0689 'X-RAY DIFFRACTION' 7 ? refined 63.5589 10.9936 23.5303 0.9293 0.3492 0.5102 0.0023 -0.0062 -0.0263 5.2438 1.5331 5.9118 0.3110 -3.2123 -1.8790 0.1512 -0.5726 -0.3636 0.6312 -0.0934 0.0166 -0.5900 0.6674 -0.0283 'X-RAY DIFFRACTION' 8 ? refined 63.7790 10.9546 10.4944 0.7636 0.2350 0.4982 -0.0229 -0.0720 -0.0383 1.2092 3.0281 0.2069 -0.7460 -0.1401 0.1536 -0.0963 -0.0016 -0.0604 0.3238 -0.2669 0.0373 -1.2850 0.0264 0.2007 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 28 through 175 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 176 through 382 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 383 through 391 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 5 through 9 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 10 through 40 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 41 through 54 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 55 through 78 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 79 through 99 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? CRANK2 ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 213 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1001 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 160 ? ? -129.39 -165.87 2 1 GLN A 259 ? ? -90.55 57.89 3 1 GLU A 261 ? ? 84.37 -9.56 4 1 ARG A 282 ? ? 85.61 -9.04 5 1 ASN A 303 ? ? 77.36 -2.28 6 1 ASN A 380 ? ? -92.98 31.52 7 1 ALA C 28 ? ? -81.68 37.93 8 1 TYR C 88 ? ? 65.72 -40.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 79 ? CG ? A ARG 52 CG 2 1 Y 1 A ARG 79 ? CD ? A ARG 52 CD 3 1 Y 1 A ARG 79 ? NE ? A ARG 52 NE 4 1 Y 1 A ARG 79 ? CZ ? A ARG 52 CZ 5 1 Y 1 A ARG 79 ? NH1 ? A ARG 52 NH1 6 1 Y 1 A ARG 79 ? NH2 ? A ARG 52 NH2 7 1 Y 1 A LYS 107 ? CG ? A LYS 80 CG 8 1 Y 1 A LYS 107 ? CD ? A LYS 80 CD 9 1 Y 1 A LYS 107 ? CE ? A LYS 80 CE 10 1 Y 1 A LYS 107 ? NZ ? A LYS 80 NZ 11 1 Y 1 A VAL 168 ? CG1 ? A VAL 141 CG1 12 1 Y 1 A VAL 168 ? CG2 ? A VAL 141 CG2 13 1 Y 1 A LYS 195 ? CG ? A LYS 168 CG 14 1 Y 1 A LYS 195 ? CD ? A LYS 168 CD 15 1 Y 1 A LYS 195 ? CE ? A LYS 168 CE 16 1 Y 1 A LYS 195 ? NZ ? A LYS 168 NZ 17 1 Y 1 A LEU 246 ? CG ? A LEU 219 CG 18 1 Y 1 A LEU 246 ? CD1 ? A LEU 219 CD1 19 1 Y 1 A LEU 246 ? CD2 ? A LEU 219 CD2 20 1 Y 1 A GLU 247 ? CG ? A GLU 220 CG 21 1 Y 1 A GLU 247 ? CD ? A GLU 220 CD 22 1 Y 1 A GLU 247 ? OE1 ? A GLU 220 OE1 23 1 Y 1 A GLU 247 ? OE2 ? A GLU 220 OE2 24 1 Y 1 A LYS 255 ? CG ? A LYS 228 CG 25 1 Y 1 A LYS 255 ? CD ? A LYS 228 CD 26 1 Y 1 A LYS 255 ? CE ? A LYS 228 CE 27 1 Y 1 A LYS 255 ? NZ ? A LYS 228 NZ 28 1 Y 1 A GLU 256 ? CG ? A GLU 229 CG 29 1 Y 1 A GLU 256 ? CD ? A GLU 229 CD 30 1 Y 1 A GLU 256 ? OE1 ? A GLU 229 OE1 31 1 Y 1 A GLU 256 ? OE2 ? A GLU 229 OE2 32 1 Y 1 A GLU 258 ? CG ? A GLU 231 CG 33 1 Y 1 A GLU 258 ? CD ? A GLU 231 CD 34 1 Y 1 A GLU 258 ? OE1 ? A GLU 231 OE1 35 1 Y 1 A GLU 258 ? OE2 ? A GLU 231 OE2 36 1 Y 1 A GLN 259 ? CG ? A GLN 232 CG 37 1 Y 1 A GLN 259 ? CD ? A GLN 232 CD 38 1 Y 1 A GLN 259 ? OE1 ? A GLN 232 OE1 39 1 Y 1 A GLN 259 ? NE2 ? A GLN 232 NE2 40 1 Y 1 A SER 260 ? OG ? A SER 233 OG 41 1 Y 1 A GLU 261 ? CG ? A GLU 234 CG 42 1 Y 1 A GLU 261 ? CD ? A GLU 234 CD 43 1 Y 1 A GLU 261 ? OE1 ? A GLU 234 OE1 44 1 Y 1 A GLU 261 ? OE2 ? A GLU 234 OE2 45 1 Y 1 A ARG 280 ? CG ? A ARG 253 CG 46 1 Y 1 A ARG 280 ? CD ? A ARG 253 CD 47 1 Y 1 A ARG 280 ? NE ? A ARG 253 NE 48 1 Y 1 A ARG 280 ? CZ ? A ARG 253 CZ 49 1 Y 1 A ARG 280 ? NH1 ? A ARG 253 NH1 50 1 Y 1 A ARG 280 ? NH2 ? A ARG 253 NH2 51 1 Y 1 A ARG 281 ? CG ? A ARG 254 CG 52 1 Y 1 A ARG 281 ? CD ? A ARG 254 CD 53 1 Y 1 A ARG 281 ? NE ? A ARG 254 NE 54 1 Y 1 A ARG 281 ? CZ ? A ARG 254 CZ 55 1 Y 1 A ARG 281 ? NH1 ? A ARG 254 NH1 56 1 Y 1 A ARG 281 ? NH2 ? A ARG 254 NH2 57 1 Y 1 A ARG 282 ? CG ? A ARG 255 CG 58 1 Y 1 A ARG 282 ? CD ? A ARG 255 CD 59 1 Y 1 A ARG 282 ? NE ? A ARG 255 NE 60 1 Y 1 A ARG 282 ? CZ ? A ARG 255 CZ 61 1 Y 1 A ARG 282 ? NH1 ? A ARG 255 NH1 62 1 Y 1 A ARG 282 ? NH2 ? A ARG 255 NH2 63 1 Y 1 A ASP 283 ? CG ? A ASP 256 CG 64 1 Y 1 A ASP 283 ? OD1 ? A ASP 256 OD1 65 1 Y 1 A ASP 283 ? OD2 ? A ASP 256 OD2 66 1 Y 1 A ASP 284 ? CG ? A ASP 257 CG 67 1 Y 1 A ASP 284 ? OD1 ? A ASP 257 OD1 68 1 Y 1 A ASP 284 ? OD2 ? A ASP 257 OD2 69 1 Y 1 A LYS 302 ? CG ? A LYS 275 CG 70 1 Y 1 A LYS 302 ? CD ? A LYS 275 CD 71 1 Y 1 A LYS 302 ? CE ? A LYS 275 CE 72 1 Y 1 A LYS 302 ? NZ ? A LYS 275 NZ 73 1 Y 1 A LYS 340 ? CG ? A LYS 313 CG 74 1 Y 1 A LYS 340 ? CD ? A LYS 313 CD 75 1 Y 1 A LYS 340 ? CE ? A LYS 313 CE 76 1 Y 1 A LYS 340 ? NZ ? A LYS 313 NZ # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F30-GM116455 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' U54-GM087519 2 'Brain Research Foundation' 'United States' ? 3 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 D NAG 1 A NAG 901 n D 4 NAG 2 D NAG 2 A NAG 902 n D 4 BMA 3 D BMA 3 A BMA 903 n D 4 BMA 4 D BMA 4 A BMA 904 n E 5 NAG 1 E NAG 1 A NAG 905 n E 5 NAG 2 E NAG 2 A NAG 906 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DManpb1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2-2/a4-b1_b4-c1_c6-d1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(6+1)][b-D-Manp]{}}}}}' LINUCS PDB-CARE ? 4 5 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 5 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 5 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 4 4 BMA C1 O1 3 BMA O6 HO6 sing ? 4 5 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n 4 BMA 4 n 5 NAG 1 n 5 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 6 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 7 GLYCEROL GOL 8 water HOH #