data_5L74 # _entry.id 5L74 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5L74 WWPDB D_1200000225 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5L74 _pdbx_database_status.recvd_initial_deposition_date 2016-06-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kong, Y.' 1 'Janssen, B.J.C.' 2 'Malinauskas, T.' 3 'Vangoor, V.R.' 4 'Coles, C.H.' 5 'Kaufmann, R.' 6 'Ni, T.' 7 'Gilbert, R.J.C.' 8 'Padilla-Parra, S.' 9 'Pasterkamp, R.J.' 10 'Jones, E.Y.' 11 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Neuron _citation.journal_id_ASTM NERNET _citation.journal_id_CSD 2038 _citation.journal_id_ISSN 1097-4199 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 91 _citation.language ? _citation.page_first 548 _citation.page_last 560 _citation.title 'Structural Basis for Plexin Activation and Regulation.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.neuron.2016.06.018 _citation.pdbx_database_id_PubMed 27397516 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kong, Y.' 1 ? primary 'Janssen, B.J.' 2 ? primary 'Malinauskas, T.' 3 ? primary 'Vangoor, V.R.' 4 ? primary 'Coles, C.H.' 5 ? primary 'Kaufmann, R.' 6 ? primary 'Ni, T.' 7 ? primary 'Gilbert, R.J.' 8 ? primary 'Padilla-Parra, S.' 9 ? primary 'Pasterkamp, R.J.' 10 ? primary 'Jones, E.Y.' 11 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 104.70 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5L74 _cell.details ? _cell.formula_units_Z ? _cell.length_a 107.710 _cell.length_a_esd ? _cell.length_b 44.560 _cell.length_b_esd ? _cell.length_c 33.010 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5L74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Plexin-A2 16905.119 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 3 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 97 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Plexin-2 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TGNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPTTCSFQEGRINVSEDCPQLVPTEEILIPVGEVKPITLKARNLPQPQS GQRGYECVLSIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFIIDNPQDLKVHLYK ; _entity_poly.pdbx_seq_one_letter_code_can ;TGNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPTTCSFQEGRINVSEDCPQLVPTEEILIPVGEVKPITLKARNLPQPQS GQRGYECVLSIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFIIDNPQDLKVHLYK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLY n 1 3 ASN n 1 4 CYS n 1 5 SER n 1 6 ALA n 1 7 HIS n 1 8 GLN n 1 9 LEU n 1 10 CYS n 1 11 LEU n 1 12 SER n 1 13 CYS n 1 14 VAL n 1 15 ASN n 1 16 SER n 1 17 ALA n 1 18 PHE n 1 19 ARG n 1 20 CYS n 1 21 HIS n 1 22 TRP n 1 23 CYS n 1 24 LYS n 1 25 TYR n 1 26 ARG n 1 27 ASN n 1 28 LEU n 1 29 CYS n 1 30 THR n 1 31 HIS n 1 32 ASP n 1 33 PRO n 1 34 THR n 1 35 THR n 1 36 CYS n 1 37 SER n 1 38 PHE n 1 39 GLN n 1 40 GLU n 1 41 GLY n 1 42 ARG n 1 43 ILE n 1 44 ASN n 1 45 VAL n 1 46 SER n 1 47 GLU n 1 48 ASP n 1 49 CYS n 1 50 PRO n 1 51 GLN n 1 52 LEU n 1 53 VAL n 1 54 PRO n 1 55 THR n 1 56 GLU n 1 57 GLU n 1 58 ILE n 1 59 LEU n 1 60 ILE n 1 61 PRO n 1 62 VAL n 1 63 GLY n 1 64 GLU n 1 65 VAL n 1 66 LYS n 1 67 PRO n 1 68 ILE n 1 69 THR n 1 70 LEU n 1 71 LYS n 1 72 ALA n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 PRO n 1 77 GLN n 1 78 PRO n 1 79 GLN n 1 80 SER n 1 81 GLY n 1 82 GLN n 1 83 ARG n 1 84 GLY n 1 85 TYR n 1 86 GLU n 1 87 CYS n 1 88 VAL n 1 89 LEU n 1 90 SER n 1 91 ILE n 1 92 GLN n 1 93 GLY n 1 94 ALA n 1 95 VAL n 1 96 HIS n 1 97 ARG n 1 98 VAL n 1 99 PRO n 1 100 ALA n 1 101 LEU n 1 102 ARG n 1 103 PHE n 1 104 ASN n 1 105 SER n 1 106 SER n 1 107 SER n 1 108 VAL n 1 109 GLN n 1 110 CYS n 1 111 GLN n 1 112 ASN n 1 113 SER n 1 114 SER n 1 115 TYR n 1 116 GLN n 1 117 TYR n 1 118 ASP n 1 119 GLY n 1 120 MET n 1 121 ASP n 1 122 ILE n 1 123 SER n 1 124 ASN n 1 125 LEU n 1 126 ALA n 1 127 VAL n 1 128 ASP n 1 129 PHE n 1 130 ALA n 1 131 VAL n 1 132 VAL n 1 133 TRP n 1 134 ASN n 1 135 GLY n 1 136 ASN n 1 137 PHE n 1 138 ILE n 1 139 ILE n 1 140 ASP n 1 141 ASN n 1 142 PRO n 1 143 GLN n 1 144 ASP n 1 145 LEU n 1 146 LYS n 1 147 VAL n 1 148 HIS n 1 149 LEU n 1 150 TYR n 1 151 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 151 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Plxna2, Kiaa0463' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name Human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293S _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLXA2_MOUSE _struct_ref.pdbx_db_accession P70207 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPTTCSFQEGRINVSEDCPQLVPTEEILIPVGEVKPITLKARNLPQPQSGQ RGYECVLSIQGAVHRVPALRFNSSSVQCQNSSYQYDGMDISNLAVDFAVVWNGNFIIDNPQDLKVHLYK ; _struct_ref.pdbx_align_begin 655 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5L74 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 151 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P70207 _struct_ref_seq.db_align_beg 655 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 803 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 655 _struct_ref_seq.pdbx_auth_seq_align_end 803 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5L74 THR A 1 ? UNP P70207 ? ? 'expression tag' 653 1 1 5L74 GLY A 2 ? UNP P70207 ? ? 'expression tag' 654 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5L74 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.5 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25% (w/v) polyethylene glycol 3,350 and 100 mM BIS-TRIS pH 5.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 300K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-12-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0163 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0163 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5L74 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.36 _reflns.d_resolution_low 52.1 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27859 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 85.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5L74 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.360 _refine.ls_d_res_low 52.092 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27856 _refine.ls_number_reflns_R_free 1400 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 85.38 _refine.ls_percent_reflns_R_free 5.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1759 _refine.ls_R_factor_R_free 0.2025 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1745 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.79 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.13 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1181 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1323 _refine_hist.d_res_high 1.360 _refine_hist.d_res_low 52.092 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 ? 1279 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.298 ? 1755 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 19.700 ? 490 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.105 ? 201 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 230 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.3601 1.4087 . . 61 1302 43.00 . . . 0.2309 . 0.2499 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4087 1.4651 . . 101 1773 57.00 . . . 0.2377 . 0.2079 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4651 1.5318 . . 136 2527 82.00 . . . 0.2172 . 0.1939 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5318 1.6125 . . 151 2888 95.00 . . . 0.2116 . 0.1840 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6125 1.7136 . . 165 2945 95.00 . . . 0.2102 . 0.1816 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7136 1.8459 . . 142 2957 95.00 . . . 0.1984 . 0.1817 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8459 2.0317 . . 165 2974 97.00 . . . 0.2105 . 0.1690 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0317 2.3257 . . 162 3010 97.00 . . . 0.2135 . 0.1714 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3257 2.9301 . . 162 3040 97.00 . . . 0.2259 . 0.1817 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9301 52.1304 . . 155 3040 96.00 . . . 0.1754 . 0.1625 . . . . . . . . . . # _struct.entry_id 5L74 _struct.title 'Plexin A2 extracellular segment domains 4-5 (PSI2-IPT2), resolution 1.36 Angstrom' _struct.pdbx_descriptor Plexin-A2 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5L74 _struct_keywords.text 'signaling protein, receptor, axon guidance, PSI-IPT domains' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 3 ? HIS A 7 ? ASN A 655 HIS A 659 5 ? 5 HELX_P HELX_P2 AA2 LEU A 9 ? ASN A 15 ? LEU A 661 ASN A 667 1 ? 7 HELX_P HELX_P3 AA3 ASP A 32 ? CYS A 36 ? ASP A 684 CYS A 688 5 ? 5 HELX_P HELX_P4 AA4 PHE A 38 ? GLU A 40 ? PHE A 690 GLU A 692 5 ? 3 HELX_P HELX_P5 AA5 VAL A 45 ? CYS A 49 ? VAL A 697 CYS A 701 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 20 SG ? ? A CYS 656 A CYS 672 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf2 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 49 SG ? ? A CYS 662 A CYS 701 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf3 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 665 A CYS 681 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf4 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 675 A CYS 688 1_555 ? ? ? ? ? ? ? 2.014 ? ? disulf5 disulf ? ? A CYS 87 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 739 A CYS 762 1_555 ? ? ? ? ? ? ? 2.060 ? ? covale1 covale one ? A ASN 3 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 655 A NAG 903 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation covale2 covale one ? A ASN 104 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 756 A NAG 901 1_555 ? ? ? ? ? ? ? 1.408 ? N-Glycosylation covale3 covale one ? A ASN 112 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 764 A NAG 902 1_555 ? ? ? ? ? ? ? 1.460 ? N-Glycosylation metalc1 metalc ? ? A LYS 24 O ? ? ? 1_555 E NA . NA ? ? A LYS 676 A NA 904 1_555 ? ? ? ? ? ? ? 2.707 ? ? metalc2 metalc ? ? A LEU 52 O ? ? ? 1_555 F NA . NA ? ? A LEU 704 A NA 905 1_555 ? ? ? ? ? ? ? 2.963 ? ? metalc3 metalc ? ? A ASN 141 OD1 ? ? ? 1_555 F NA . NA ? ? A ASN 793 A NA 905 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 904 A HOH 1044 1_555 ? ? ? ? ? ? ? 2.441 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 904 A HOH 1089 1_555 ? ? ? ? ? ? ? 2.607 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 8 ? AA3 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 28 ? THR A 30 ? LEU A 680 THR A 682 AA1 2 HIS A 21 ? CYS A 23 ? HIS A 673 CYS A 675 AA1 3 ARG A 42 ? ILE A 43 ? ARG A 694 ILE A 695 AA2 1 GLN A 51 ? LEU A 52 ? GLN A 703 LEU A 704 AA2 2 LYS A 66 ? ARG A 73 ? LYS A 718 ARG A 725 AA2 3 SER A 107 ? SER A 113 ? SER A 759 SER A 765 AA2 4 ALA A 94 ? ASN A 104 ? ALA A 746 ASN A 756 AA2 5 TYR A 85 ? ILE A 91 ? TYR A 737 ILE A 743 AA2 6 ASN A 124 ? TRP A 133 ? ASN A 776 TRP A 785 AA2 7 VAL A 147 ? TYR A 150 ? VAL A 799 TYR A 802 AA2 8 ILE A 58 ? PRO A 61 ? ILE A 710 PRO A 713 AA3 1 GLN A 51 ? LEU A 52 ? GLN A 703 LEU A 704 AA3 2 LYS A 66 ? ARG A 73 ? LYS A 718 ARG A 725 AA3 3 SER A 107 ? SER A 113 ? SER A 759 SER A 765 AA3 4 ALA A 94 ? ASN A 104 ? ALA A 746 ASN A 756 AA3 5 TYR A 85 ? ILE A 91 ? TYR A 737 ILE A 743 AA3 6 ASN A 124 ? TRP A 133 ? ASN A 776 TRP A 785 AA3 7 PHE A 137 ? ILE A 138 ? PHE A 789 ILE A 790 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 28 ? O LEU A 680 N CYS A 23 ? N CYS A 675 AA1 2 3 N TRP A 22 ? N TRP A 674 O ILE A 43 ? O ILE A 695 AA2 1 2 N GLN A 51 ? N GLN A 703 O ARG A 73 ? O ARG A 725 AA2 2 3 N LEU A 70 ? N LEU A 722 O VAL A 108 ? O VAL A 760 AA2 3 4 O GLN A 111 ? O GLN A 763 N PRO A 99 ? N PRO A 751 AA2 4 5 O HIS A 96 ? O HIS A 748 N LEU A 89 ? N LEU A 741 AA2 5 6 N VAL A 88 ? N VAL A 740 O ALA A 130 ? O ALA A 782 AA2 6 7 N VAL A 127 ? N VAL A 779 O VAL A 147 ? O VAL A 799 AA2 7 8 O HIS A 148 ? O HIS A 800 N ILE A 60 ? N ILE A 712 AA3 1 2 N GLN A 51 ? N GLN A 703 O ARG A 73 ? O ARG A 725 AA3 2 3 N LEU A 70 ? N LEU A 722 O VAL A 108 ? O VAL A 760 AA3 3 4 O GLN A 111 ? O GLN A 763 N PRO A 99 ? N PRO A 751 AA3 4 5 O HIS A 96 ? O HIS A 748 N LEU A 89 ? N LEU A 741 AA3 5 6 N VAL A 88 ? N VAL A 740 O ALA A 130 ? O ALA A 782 AA3 6 7 N TRP A 133 ? N TRP A 785 O PHE A 137 ? O PHE A 789 # _atom_sites.entry_id 5L74 _atom_sites.fract_transf_matrix[1][1] 0.009284 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002436 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022442 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031319 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 653 653 THR THR A . n A 1 2 GLY 2 654 654 GLY GLY A . n A 1 3 ASN 3 655 655 ASN ASN A . n A 1 4 CYS 4 656 656 CYS CYS A . n A 1 5 SER 5 657 657 SER SER A . n A 1 6 ALA 6 658 658 ALA ALA A . n A 1 7 HIS 7 659 659 HIS HIS A . n A 1 8 GLN 8 660 660 GLN GLN A . n A 1 9 LEU 9 661 661 LEU LEU A . n A 1 10 CYS 10 662 662 CYS CYS A . n A 1 11 LEU 11 663 663 LEU LEU A . n A 1 12 SER 12 664 664 SER SER A . n A 1 13 CYS 13 665 665 CYS CYS A . n A 1 14 VAL 14 666 666 VAL VAL A . n A 1 15 ASN 15 667 667 ASN ASN A . n A 1 16 SER 16 668 668 SER SER A . n A 1 17 ALA 17 669 669 ALA ALA A . n A 1 18 PHE 18 670 670 PHE PHE A . n A 1 19 ARG 19 671 671 ARG ARG A . n A 1 20 CYS 20 672 672 CYS CYS A . n A 1 21 HIS 21 673 673 HIS HIS A . n A 1 22 TRP 22 674 674 TRP TRP A . n A 1 23 CYS 23 675 675 CYS CYS A . n A 1 24 LYS 24 676 676 LYS LYS A . n A 1 25 TYR 25 677 677 TYR TYR A . n A 1 26 ARG 26 678 678 ARG ARG A . n A 1 27 ASN 27 679 679 ASN ASN A . n A 1 28 LEU 28 680 680 LEU LEU A . n A 1 29 CYS 29 681 681 CYS CYS A . n A 1 30 THR 30 682 682 THR THR A . n A 1 31 HIS 31 683 683 HIS HIS A . n A 1 32 ASP 32 684 684 ASP ASP A . n A 1 33 PRO 33 685 685 PRO PRO A . n A 1 34 THR 34 686 686 THR THR A . n A 1 35 THR 35 687 687 THR THR A . n A 1 36 CYS 36 688 688 CYS CYS A . n A 1 37 SER 37 689 689 SER SER A . n A 1 38 PHE 38 690 690 PHE PHE A . n A 1 39 GLN 39 691 691 GLN GLN A . n A 1 40 GLU 40 692 692 GLU GLU A . n A 1 41 GLY 41 693 693 GLY GLY A . n A 1 42 ARG 42 694 694 ARG ARG A . n A 1 43 ILE 43 695 695 ILE ILE A . n A 1 44 ASN 44 696 696 ASN ASN A . n A 1 45 VAL 45 697 697 VAL VAL A . n A 1 46 SER 46 698 698 SER SER A . n A 1 47 GLU 47 699 699 GLU GLU A . n A 1 48 ASP 48 700 700 ASP ASP A . n A 1 49 CYS 49 701 701 CYS CYS A . n A 1 50 PRO 50 702 702 PRO PRO A . n A 1 51 GLN 51 703 703 GLN GLN A . n A 1 52 LEU 52 704 704 LEU LEU A . n A 1 53 VAL 53 705 705 VAL VAL A . n A 1 54 PRO 54 706 706 PRO PRO A . n A 1 55 THR 55 707 707 THR THR A . n A 1 56 GLU 56 708 708 GLU GLU A . n A 1 57 GLU 57 709 709 GLU GLU A . n A 1 58 ILE 58 710 710 ILE ILE A . n A 1 59 LEU 59 711 711 LEU LEU A . n A 1 60 ILE 60 712 712 ILE ILE A . n A 1 61 PRO 61 713 713 PRO PRO A . n A 1 62 VAL 62 714 714 VAL VAL A . n A 1 63 GLY 63 715 715 GLY GLY A . n A 1 64 GLU 64 716 716 GLU GLU A . n A 1 65 VAL 65 717 717 VAL VAL A . n A 1 66 LYS 66 718 718 LYS LYS A . n A 1 67 PRO 67 719 719 PRO PRO A . n A 1 68 ILE 68 720 720 ILE ILE A . n A 1 69 THR 69 721 721 THR THR A . n A 1 70 LEU 70 722 722 LEU LEU A . n A 1 71 LYS 71 723 723 LYS LYS A . n A 1 72 ALA 72 724 724 ALA ALA A . n A 1 73 ARG 73 725 725 ARG ARG A . n A 1 74 ASN 74 726 726 ASN ASN A . n A 1 75 LEU 75 727 727 LEU LEU A . n A 1 76 PRO 76 728 728 PRO PRO A . n A 1 77 GLN 77 729 729 GLN GLN A . n A 1 78 PRO 78 730 730 PRO PRO A . n A 1 79 GLN 79 731 731 GLN GLN A . n A 1 80 SER 80 732 732 SER SER A . n A 1 81 GLY 81 733 733 GLY GLY A . n A 1 82 GLN 82 734 734 GLN GLN A . n A 1 83 ARG 83 735 735 ARG ARG A . n A 1 84 GLY 84 736 736 GLY GLY A . n A 1 85 TYR 85 737 737 TYR TYR A . n A 1 86 GLU 86 738 738 GLU GLU A . n A 1 87 CYS 87 739 739 CYS CYS A . n A 1 88 VAL 88 740 740 VAL VAL A . n A 1 89 LEU 89 741 741 LEU LEU A . n A 1 90 SER 90 742 742 SER SER A . n A 1 91 ILE 91 743 743 ILE ILE A . n A 1 92 GLN 92 744 744 GLN GLN A . n A 1 93 GLY 93 745 745 GLY GLY A . n A 1 94 ALA 94 746 746 ALA ALA A . n A 1 95 VAL 95 747 747 VAL VAL A . n A 1 96 HIS 96 748 748 HIS HIS A . n A 1 97 ARG 97 749 749 ARG ARG A . n A 1 98 VAL 98 750 750 VAL VAL A . n A 1 99 PRO 99 751 751 PRO PRO A . n A 1 100 ALA 100 752 752 ALA ALA A . n A 1 101 LEU 101 753 753 LEU LEU A . n A 1 102 ARG 102 754 754 ARG ARG A . n A 1 103 PHE 103 755 755 PHE PHE A . n A 1 104 ASN 104 756 756 ASN ASN A . n A 1 105 SER 105 757 757 SER SER A . n A 1 106 SER 106 758 758 SER SER A . n A 1 107 SER 107 759 759 SER SER A . n A 1 108 VAL 108 760 760 VAL VAL A . n A 1 109 GLN 109 761 761 GLN GLN A . n A 1 110 CYS 110 762 762 CYS CYS A . n A 1 111 GLN 111 763 763 GLN GLN A . n A 1 112 ASN 112 764 764 ASN ASN A . n A 1 113 SER 113 765 765 SER SER A . n A 1 114 SER 114 766 766 SER SER A . n A 1 115 TYR 115 767 767 TYR TYR A . n A 1 116 GLN 116 768 768 GLN GLN A . n A 1 117 TYR 117 769 769 TYR TYR A . n A 1 118 ASP 118 770 770 ASP ASP A . n A 1 119 GLY 119 771 771 GLY GLY A . n A 1 120 MET 120 772 772 MET MET A . n A 1 121 ASP 121 773 773 ASP ASP A . n A 1 122 ILE 122 774 774 ILE ILE A . n A 1 123 SER 123 775 775 SER SER A . n A 1 124 ASN 124 776 776 ASN ASN A . n A 1 125 LEU 125 777 777 LEU LEU A . n A 1 126 ALA 126 778 778 ALA ALA A . n A 1 127 VAL 127 779 779 VAL VAL A . n A 1 128 ASP 128 780 780 ASP ASP A . n A 1 129 PHE 129 781 781 PHE PHE A . n A 1 130 ALA 130 782 782 ALA ALA A . n A 1 131 VAL 131 783 783 VAL VAL A . n A 1 132 VAL 132 784 784 VAL VAL A . n A 1 133 TRP 133 785 785 TRP TRP A . n A 1 134 ASN 134 786 786 ASN ASN A . n A 1 135 GLY 135 787 787 GLY GLY A . n A 1 136 ASN 136 788 788 ASN ASN A . n A 1 137 PHE 137 789 789 PHE PHE A . n A 1 138 ILE 138 790 790 ILE ILE A . n A 1 139 ILE 139 791 791 ILE ILE A . n A 1 140 ASP 140 792 792 ASP ASP A . n A 1 141 ASN 141 793 793 ASN ASN A . n A 1 142 PRO 142 794 794 PRO PRO A . n A 1 143 GLN 143 795 795 GLN GLN A . n A 1 144 ASP 144 796 796 ASP ASP A . n A 1 145 LEU 145 797 797 LEU LEU A . n A 1 146 LYS 146 798 798 LYS LYS A . n A 1 147 VAL 147 799 799 VAL VAL A . n A 1 148 HIS 148 800 800 HIS HIS A . n A 1 149 LEU 149 801 801 LEU LEU A . n A 1 150 TYR 150 802 802 TYR TYR A . n A 1 151 LYS 151 803 803 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 901 804 NAG NAG A . C 2 NAG 1 902 805 NAG NAG A . D 2 NAG 1 903 806 NAG NAG A . E 3 NA 1 904 910 NA NA A . F 3 NA 1 905 911 NA NA A . G 4 CL 1 906 912 CL CL A . H 5 HOH 1 1001 906 HOH HOH A . H 5 HOH 2 1002 904 HOH HOH A . H 5 HOH 3 1003 882 HOH HOH A . H 5 HOH 4 1004 856 HOH HOH A . H 5 HOH 5 1005 896 HOH HOH A . H 5 HOH 6 1006 815 HOH HOH A . H 5 HOH 7 1007 843 HOH HOH A . H 5 HOH 8 1008 840 HOH HOH A . H 5 HOH 9 1009 884 HOH HOH A . H 5 HOH 10 1010 826 HOH HOH A . H 5 HOH 11 1011 814 HOH HOH A . H 5 HOH 12 1012 890 HOH HOH A . H 5 HOH 13 1013 898 HOH HOH A . H 5 HOH 14 1014 845 HOH HOH A . H 5 HOH 15 1015 872 HOH HOH A . H 5 HOH 16 1016 876 HOH HOH A . H 5 HOH 17 1017 820 HOH HOH A . H 5 HOH 18 1018 846 HOH HOH A . H 5 HOH 19 1019 875 HOH HOH A . H 5 HOH 20 1020 842 HOH HOH A . H 5 HOH 21 1021 821 HOH HOH A . H 5 HOH 22 1022 818 HOH HOH A . H 5 HOH 23 1023 808 HOH HOH A . H 5 HOH 24 1024 888 HOH HOH A . H 5 HOH 25 1025 902 HOH HOH A . H 5 HOH 26 1026 816 HOH HOH A . H 5 HOH 27 1027 807 HOH HOH A . H 5 HOH 28 1028 858 HOH HOH A . H 5 HOH 29 1029 891 HOH HOH A . H 5 HOH 30 1030 811 HOH HOH A . H 5 HOH 31 1031 899 HOH HOH A . H 5 HOH 32 1032 881 HOH HOH A . H 5 HOH 33 1033 841 HOH HOH A . H 5 HOH 34 1034 847 HOH HOH A . H 5 HOH 35 1035 867 HOH HOH A . H 5 HOH 36 1036 889 HOH HOH A . H 5 HOH 37 1037 824 HOH HOH A . H 5 HOH 38 1038 883 HOH HOH A . H 5 HOH 39 1039 877 HOH HOH A . H 5 HOH 40 1040 866 HOH HOH A . H 5 HOH 41 1041 893 HOH HOH A . H 5 HOH 42 1042 837 HOH HOH A . H 5 HOH 43 1043 836 HOH HOH A . H 5 HOH 44 1044 855 HOH HOH A . H 5 HOH 45 1045 870 HOH HOH A . H 5 HOH 46 1046 897 HOH HOH A . H 5 HOH 47 1047 850 HOH HOH A . H 5 HOH 48 1048 817 HOH HOH A . H 5 HOH 49 1049 851 HOH HOH A . H 5 HOH 50 1050 810 HOH HOH A . H 5 HOH 51 1051 813 HOH HOH A . H 5 HOH 52 1052 909 HOH HOH A . H 5 HOH 53 1053 865 HOH HOH A . H 5 HOH 54 1054 828 HOH HOH A . H 5 HOH 55 1055 863 HOH HOH A . H 5 HOH 56 1056 838 HOH HOH A . H 5 HOH 57 1057 849 HOH HOH A . H 5 HOH 58 1058 914 HOH HOH A . H 5 HOH 59 1059 908 HOH HOH A . H 5 HOH 60 1060 861 HOH HOH A . H 5 HOH 61 1061 819 HOH HOH A . H 5 HOH 62 1062 825 HOH HOH A . H 5 HOH 63 1063 886 HOH HOH A . H 5 HOH 64 1064 885 HOH HOH A . H 5 HOH 65 1065 823 HOH HOH A . H 5 HOH 66 1066 839 HOH HOH A . H 5 HOH 67 1067 900 HOH HOH A . H 5 HOH 68 1068 878 HOH HOH A . H 5 HOH 69 1069 879 HOH HOH A . H 5 HOH 70 1070 871 HOH HOH A . H 5 HOH 71 1071 895 HOH HOH A . H 5 HOH 72 1072 812 HOH HOH A . H 5 HOH 73 1073 844 HOH HOH A . H 5 HOH 74 1074 907 HOH HOH A . H 5 HOH 75 1075 822 HOH HOH A . H 5 HOH 76 1076 809 HOH HOH A . H 5 HOH 77 1077 894 HOH HOH A . H 5 HOH 78 1078 852 HOH HOH A . H 5 HOH 79 1079 854 HOH HOH A . H 5 HOH 80 1080 892 HOH HOH A . H 5 HOH 81 1081 874 HOH HOH A . H 5 HOH 82 1082 905 HOH HOH A . H 5 HOH 83 1083 869 HOH HOH A . H 5 HOH 84 1084 848 HOH HOH A . H 5 HOH 85 1085 862 HOH HOH A . H 5 HOH 86 1086 827 HOH HOH A . H 5 HOH 87 1087 903 HOH HOH A . H 5 HOH 88 1088 864 HOH HOH A . H 5 HOH 89 1089 887 HOH HOH A . H 5 HOH 90 1090 901 HOH HOH A . H 5 HOH 91 1091 853 HOH HOH A . H 5 HOH 92 1092 868 HOH HOH A . H 5 HOH 93 1093 880 HOH HOH A . H 5 HOH 94 1094 913 HOH HOH A . H 5 HOH 95 1095 857 HOH HOH A . H 5 HOH 96 1096 859 HOH HOH A . H 5 HOH 97 1097 873 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 920 ? 1 MORE -30 ? 1 'SSA (A^2)' 8820 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 24 ? A LYS 676 ? 1_555 NA ? E NA . ? A NA 904 ? 1_555 O ? H HOH . ? A HOH 1044 ? 1_555 109.0 ? 2 O ? A LYS 24 ? A LYS 676 ? 1_555 NA ? E NA . ? A NA 904 ? 1_555 O ? H HOH . ? A HOH 1089 ? 1_555 126.6 ? 3 O ? H HOH . ? A HOH 1044 ? 1_555 NA ? E NA . ? A NA 904 ? 1_555 O ? H HOH . ? A HOH 1089 ? 1_555 52.7 ? 4 O ? A LEU 52 ? A LEU 704 ? 1_555 NA ? F NA . ? A NA 905 ? 1_555 OD1 ? A ASN 141 ? A ASN 793 ? 1_555 128.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-15 2 'Structure model' 1 1 2017-08-30 3 'Structure model' 1 2 2019-10-16 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' reflns_shell 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_chem_comp.name' 3 4 'Structure model' '_chem_comp.type' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.value' 9 4 'Structure model' '_struct_conn.conn_type_id' 10 4 'Structure model' '_struct_conn.id' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 4 'Structure model' '_struct_conn.pdbx_role' 14 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 36.6580 5.7355 22.4117 0.1628 0.1406 0.1134 0.0273 -0.0062 -0.0056 1.2439 0.7523 0.8494 0.1057 0.2042 -0.0852 0.0089 -0.0718 0.0264 0.2635 0.0504 -0.1650 -0.0281 0.1325 0.0089 'X-RAY DIFFRACTION' 2 ? refined 20.0285 3.3488 4.9054 0.0985 0.1021 0.1118 -0.0002 0.0281 0.0094 1.3743 1.2294 1.2185 -0.4669 0.4848 -0.1726 0.0169 0.1391 -0.0464 0.0394 -0.0192 0.1823 0.0757 -0.0161 0.0043 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 653 through 700 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 701 through 803 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2283: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 1045 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1094 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.79 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 1092 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 1094 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 671 ? ? 64.95 81.13 2 1 ASN A 788 ? ? -145.85 21.37 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Cancer Research UK' 'United Kingdom' A10976 1 'Medical Research Council (United Kingdom)' 'United Kingdom' G9900061 2 'Wellcome Trust' 'United Kingdom' 090532/Z/09/Z 3 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 water HOH #