data_5LMW # _entry.id 5LMW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LMW pdb_00005lmw 10.2210/pdb5lmw/pdb WWPDB D_1200001009 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-05-03 2 'Structure model' 1 1 2017-05-10 3 'Structure model' 1 2 2017-05-17 4 'Structure model' 1 3 2017-09-06 5 'Structure model' 1 4 2017-11-29 6 'Structure model' 1 5 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Database references' 5 6 'Structure model' Advisory 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 5 'Structure model' pdbx_database_related 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_initial_refinement_model 7 6 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LMW _pdbx_database_status.recvd_initial_deposition_date 2016-08-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'nb130, other nanobodies raised against PorM' 5FWO unspecified PDB 'nb19, other nanobodies raised against PorM' 5LMJ unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Roche, J.' 1 'Gaubert, A.' 2 'Leone, P.' 3 'Roussel, A.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr F Struct Biol Commun' _citation.journal_id_ASTM ACSFEN _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-230X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 73 _citation.language ? _citation.page_first 286 _citation.page_last 293 _citation.title ;Camelid nanobodies used as crystallization chaperones for different constructs of PorM, a component of the type IX secretion system from Porphyromonas gingivalis. ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053230X17005969 _citation.pdbx_database_id_PubMed 28471361 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Duhoo, Y.' 1 ? primary 'Roche, J.' 2 ? primary 'Trinh, T.T.N.' 3 ? primary 'Desmyter, A.' 4 ? primary 'Gaubert, A.' 5 ? primary 'Kellenberger, C.' 6 ? primary 'Cambillau, C.' 7 ? primary 'Roussel, A.' 8 ? primary 'Leone, P.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Nanobody 14518.129 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 213 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAQVQLVESGGGLVQAGDSLRLSCAASGLTFNRYNMGWFRQAPGREREFVASISWSGDRTYGTDSVKGRFAISRDNAKNT MYLQMNSLKPEDTAVYYCAADRFLTRSVKYDYWGQGTQVTVSSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MAQVQLVESGGGLVQAGDSLRLSCAASGLTFNRYNMGWFRQAPGREREFVASISWSGDRTYGTDSVKGRFAISRDNAKNT MYLQMNSLKPEDTAVYYCAADRFLTRSVKYDYWGQGTQVTVSSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLN n 1 4 VAL n 1 5 GLN n 1 6 LEU n 1 7 VAL n 1 8 GLU n 1 9 SER n 1 10 GLY n 1 11 GLY n 1 12 GLY n 1 13 LEU n 1 14 VAL n 1 15 GLN n 1 16 ALA n 1 17 GLY n 1 18 ASP n 1 19 SER n 1 20 LEU n 1 21 ARG n 1 22 LEU n 1 23 SER n 1 24 CYS n 1 25 ALA n 1 26 ALA n 1 27 SER n 1 28 GLY n 1 29 LEU n 1 30 THR n 1 31 PHE n 1 32 ASN n 1 33 ARG n 1 34 TYR n 1 35 ASN n 1 36 MET n 1 37 GLY n 1 38 TRP n 1 39 PHE n 1 40 ARG n 1 41 GLN n 1 42 ALA n 1 43 PRO n 1 44 GLY n 1 45 ARG n 1 46 GLU n 1 47 ARG n 1 48 GLU n 1 49 PHE n 1 50 VAL n 1 51 ALA n 1 52 SER n 1 53 ILE n 1 54 SER n 1 55 TRP n 1 56 SER n 1 57 GLY n 1 58 ASP n 1 59 ARG n 1 60 THR n 1 61 TYR n 1 62 GLY n 1 63 THR n 1 64 ASP n 1 65 SER n 1 66 VAL n 1 67 LYS n 1 68 GLY n 1 69 ARG n 1 70 PHE n 1 71 ALA n 1 72 ILE n 1 73 SER n 1 74 ARG n 1 75 ASP n 1 76 ASN n 1 77 ALA n 1 78 LYS n 1 79 ASN n 1 80 THR n 1 81 MET n 1 82 TYR n 1 83 LEU n 1 84 GLN n 1 85 MET n 1 86 ASN n 1 87 SER n 1 88 LEU n 1 89 LYS n 1 90 PRO n 1 91 GLU n 1 92 ASP n 1 93 THR n 1 94 ALA n 1 95 VAL n 1 96 TYR n 1 97 TYR n 1 98 CYS n 1 99 ALA n 1 100 ALA n 1 101 ASP n 1 102 ARG n 1 103 PHE n 1 104 LEU n 1 105 THR n 1 106 ARG n 1 107 SER n 1 108 VAL n 1 109 LYS n 1 110 TYR n 1 111 ASP n 1 112 TYR n 1 113 TRP n 1 114 GLY n 1 115 GLN n 1 116 GLY n 1 117 THR n 1 118 GLN n 1 119 VAL n 1 120 THR n 1 121 VAL n 1 122 SER n 1 123 SER n 1 124 HIS n 1 125 HIS n 1 126 HIS n 1 127 HIS n 1 128 HIS n 1 129 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 129 _entity_src_gen.gene_src_common_name llama _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lama glama' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9844 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell WK6 _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHEN6 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -1 ? ? ? A . n A 1 2 ALA 2 0 ? ? ? A . n A 1 3 GLN 3 1 ? ? ? A . n A 1 4 VAL 4 2 2 VAL VAL A . n A 1 5 GLN 5 3 3 GLN GLN A . n A 1 6 LEU 6 4 4 LEU LEU A . n A 1 7 VAL 7 5 5 VAL VAL A . n A 1 8 GLU 8 6 6 GLU GLU A . n A 1 9 SER 9 7 7 SER SER A . n A 1 10 GLY 10 8 8 GLY GLY A . n A 1 11 GLY 11 9 9 GLY GLY A . n A 1 12 GLY 12 10 10 GLY GLY A . n A 1 13 LEU 13 11 11 LEU LEU A . n A 1 14 VAL 14 12 12 VAL VAL A . n A 1 15 GLN 15 13 13 GLN GLN A . n A 1 16 ALA 16 14 14 ALA ALA A . n A 1 17 GLY 17 15 15 GLY GLY A . n A 1 18 ASP 18 16 16 ASP ASP A . n A 1 19 SER 19 17 17 SER SER A . n A 1 20 LEU 20 18 18 LEU LEU A . n A 1 21 ARG 21 19 19 ARG ARG A . n A 1 22 LEU 22 20 20 LEU LEU A . n A 1 23 SER 23 21 21 SER SER A . n A 1 24 CYS 24 22 22 CYS CYS A . n A 1 25 ALA 25 23 23 ALA ALA A . n A 1 26 ALA 26 24 24 ALA ALA A . n A 1 27 SER 27 25 25 SER SER A . n A 1 28 GLY 28 26 26 GLY GLY A . n A 1 29 LEU 29 27 27 LEU LEU A . n A 1 30 THR 30 28 28 THR THR A . n A 1 31 PHE 31 29 29 PHE PHE A . n A 1 32 ASN 32 30 30 ASN ASN A . n A 1 33 ARG 33 31 31 ARG ARG A . n A 1 34 TYR 34 32 32 TYR TYR A . n A 1 35 ASN 35 33 33 ASN ASN A . n A 1 36 MET 36 34 34 MET MET A . n A 1 37 GLY 37 35 35 GLY GLY A . n A 1 38 TRP 38 36 36 TRP TRP A . n A 1 39 PHE 39 37 37 PHE PHE A . n A 1 40 ARG 40 38 38 ARG ARG A . n A 1 41 GLN 41 39 39 GLN GLN A . n A 1 42 ALA 42 40 40 ALA ALA A . n A 1 43 PRO 43 41 41 PRO PRO A . n A 1 44 GLY 44 42 42 GLY GLY A . n A 1 45 ARG 45 43 43 ARG ARG A . n A 1 46 GLU 46 44 44 GLU GLU A . n A 1 47 ARG 47 45 45 ARG ARG A . n A 1 48 GLU 48 46 46 GLU GLU A . n A 1 49 PHE 49 47 47 PHE PHE A . n A 1 50 VAL 50 48 48 VAL VAL A . n A 1 51 ALA 51 49 49 ALA ALA A . n A 1 52 SER 52 50 50 SER SER A . n A 1 53 ILE 53 51 51 ILE ILE A . n A 1 54 SER 54 52 52 SER SER A . n A 1 55 TRP 55 52 52 TRP TRP A A n A 1 56 SER 56 53 53 SER SER A . n A 1 57 GLY 57 54 54 GLY GLY A . n A 1 58 ASP 58 55 55 ASP ASP A . n A 1 59 ARG 59 56 56 ARG ARG A . n A 1 60 THR 60 57 57 THR THR A . n A 1 61 TYR 61 58 58 TYR TYR A . n A 1 62 GLY 62 59 59 GLY GLY A . n A 1 63 THR 63 60 60 THR THR A . n A 1 64 ASP 64 61 61 ASP ASP A . n A 1 65 SER 65 62 62 SER SER A . n A 1 66 VAL 66 63 63 VAL VAL A . n A 1 67 LYS 67 64 64 LYS LYS A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 PHE 70 67 67 PHE PHE A . n A 1 71 ALA 71 68 68 ALA ALA A . n A 1 72 ILE 72 69 69 ILE ILE A . n A 1 73 SER 73 70 70 SER SER A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 ASP 75 72 72 ASP ASP A . n A 1 76 ASN 76 73 73 ASN ASN A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 LYS 78 75 75 LYS LYS A . n A 1 79 ASN 79 76 76 ASN ASN A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 MET 81 78 78 MET MET A . n A 1 82 TYR 82 79 79 TYR TYR A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 GLN 84 81 81 GLN GLN A . n A 1 85 MET 85 82 82 MET MET A . n A 1 86 ASN 86 82 82 ASN ASN A A n A 1 87 SER 87 82 82 SER SER A B n A 1 88 LEU 88 82 82 LEU LEU A C n A 1 89 LYS 89 83 83 LYS LYS A . n A 1 90 PRO 90 84 84 PRO PRO A . n A 1 91 GLU 91 85 85 GLU GLU A . n A 1 92 ASP 92 86 86 ASP ASP A . n A 1 93 THR 93 87 87 THR THR A . n A 1 94 ALA 94 88 88 ALA ALA A . n A 1 95 VAL 95 89 89 VAL VAL A . n A 1 96 TYR 96 90 90 TYR TYR A . n A 1 97 TYR 97 91 91 TYR TYR A . n A 1 98 CYS 98 92 92 CYS CYS A . n A 1 99 ALA 99 93 93 ALA ALA A . n A 1 100 ALA 100 94 94 ALA ALA A . n A 1 101 ASP 101 95 95 ASP ASP A . n A 1 102 ARG 102 96 96 ARG ARG A . n A 1 103 PHE 103 97 97 PHE PHE A . n A 1 104 LEU 104 98 98 LEU LEU A . n A 1 105 THR 105 99 99 THR THR A . n A 1 106 ARG 106 100 100 ARG ARG A . n A 1 107 SER 107 100 100 SER SER A A n A 1 108 VAL 108 100 100 VAL VAL A B n A 1 109 LYS 109 100 100 LYS LYS A C n A 1 110 TYR 110 100 100 TYR TYR A D n A 1 111 ASP 111 101 101 ASP ASP A . n A 1 112 TYR 112 102 102 TYR TYR A . n A 1 113 TRP 113 103 103 TRP TRP A . n A 1 114 GLY 114 104 104 GLY GLY A . n A 1 115 GLN 115 105 105 GLN GLN A . n A 1 116 GLY 116 106 106 GLY GLY A . n A 1 117 THR 117 107 107 THR THR A . n A 1 118 GLN 118 108 108 GLN GLN A . n A 1 119 VAL 119 109 109 VAL VAL A . n A 1 120 THR 120 110 110 THR THR A . n A 1 121 VAL 121 111 111 VAL VAL A . n A 1 122 SER 122 112 112 SER SER A . n A 1 123 SER 123 113 113 SER SER A . n A 1 124 HIS 124 114 ? ? ? A . n A 1 125 HIS 125 115 ? ? ? A . n A 1 126 HIS 126 116 ? ? ? A . n A 1 127 HIS 127 117 ? ? ? A . n A 1 128 HIS 128 118 ? ? ? A . n A 1 129 HIS 129 119 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 200 200 GOL GOL A . C 3 HOH 1 301 221 HOH HOH A . C 3 HOH 2 302 5 HOH HOH A . C 3 HOH 3 303 152 HOH HOH A . C 3 HOH 4 304 53 HOH HOH A . C 3 HOH 5 305 12 HOH HOH A . C 3 HOH 6 306 78 HOH HOH A . C 3 HOH 7 307 40 HOH HOH A . C 3 HOH 8 308 67 HOH HOH A . C 3 HOH 9 309 173 HOH HOH A . C 3 HOH 10 310 134 HOH HOH A . C 3 HOH 11 311 82 HOH HOH A . C 3 HOH 12 312 151 HOH HOH A . C 3 HOH 13 313 209 HOH HOH A . C 3 HOH 14 314 135 HOH HOH A . C 3 HOH 15 315 42 HOH HOH A . C 3 HOH 16 316 99 HOH HOH A . C 3 HOH 17 317 23 HOH HOH A . C 3 HOH 18 318 1 HOH HOH A . C 3 HOH 19 319 2 HOH HOH A . C 3 HOH 20 320 30 HOH HOH A . C 3 HOH 21 321 200 HOH HOH A . C 3 HOH 22 322 51 HOH HOH A . C 3 HOH 23 323 44 HOH HOH A . C 3 HOH 24 324 81 HOH HOH A . C 3 HOH 25 325 157 HOH HOH A . C 3 HOH 26 326 63 HOH HOH A . C 3 HOH 27 327 167 HOH HOH A . C 3 HOH 28 328 32 HOH HOH A . C 3 HOH 29 329 175 HOH HOH A . C 3 HOH 30 330 171 HOH HOH A . C 3 HOH 31 331 77 HOH HOH A . C 3 HOH 32 332 50 HOH HOH A . C 3 HOH 33 333 174 HOH HOH A . C 3 HOH 34 334 33 HOH HOH A . C 3 HOH 35 335 85 HOH HOH A . C 3 HOH 36 336 89 HOH HOH A . C 3 HOH 37 337 204 HOH HOH A . C 3 HOH 38 338 136 HOH HOH A . C 3 HOH 39 339 6 HOH HOH A . C 3 HOH 40 340 94 HOH HOH A . C 3 HOH 41 341 137 HOH HOH A . C 3 HOH 42 342 46 HOH HOH A . C 3 HOH 43 343 145 HOH HOH A . C 3 HOH 44 344 131 HOH HOH A . C 3 HOH 45 345 106 HOH HOH A . C 3 HOH 46 346 66 HOH HOH A . C 3 HOH 47 347 208 HOH HOH A . C 3 HOH 48 348 188 HOH HOH A . C 3 HOH 49 349 62 HOH HOH A . C 3 HOH 50 350 20 HOH HOH A . C 3 HOH 51 351 218 HOH HOH A . C 3 HOH 52 352 180 HOH HOH A . C 3 HOH 53 353 205 HOH HOH A . C 3 HOH 54 354 76 HOH HOH A . C 3 HOH 55 355 11 HOH HOH A . C 3 HOH 56 356 16 HOH HOH A . C 3 HOH 57 357 83 HOH HOH A . C 3 HOH 58 358 35 HOH HOH A . C 3 HOH 59 359 198 HOH HOH A . C 3 HOH 60 360 75 HOH HOH A . C 3 HOH 61 361 27 HOH HOH A . C 3 HOH 62 362 13 HOH HOH A . C 3 HOH 63 363 79 HOH HOH A . C 3 HOH 64 364 88 HOH HOH A . C 3 HOH 65 365 128 HOH HOH A . C 3 HOH 66 366 212 HOH HOH A . C 3 HOH 67 367 4 HOH HOH A . C 3 HOH 68 368 3 HOH HOH A . C 3 HOH 69 369 116 HOH HOH A . C 3 HOH 70 370 132 HOH HOH A . C 3 HOH 71 371 139 HOH HOH A . C 3 HOH 72 372 181 HOH HOH A . C 3 HOH 73 373 14 HOH HOH A . C 3 HOH 74 374 43 HOH HOH A . C 3 HOH 75 375 155 HOH HOH A . C 3 HOH 76 376 10 HOH HOH A . C 3 HOH 77 377 36 HOH HOH A . C 3 HOH 78 378 201 HOH HOH A . C 3 HOH 79 379 31 HOH HOH A . C 3 HOH 80 380 47 HOH HOH A . C 3 HOH 81 381 29 HOH HOH A . C 3 HOH 82 382 65 HOH HOH A . C 3 HOH 83 383 104 HOH HOH A . C 3 HOH 84 384 112 HOH HOH A . C 3 HOH 85 385 102 HOH HOH A . C 3 HOH 86 386 126 HOH HOH A . C 3 HOH 87 387 54 HOH HOH A . C 3 HOH 88 388 49 HOH HOH A . C 3 HOH 89 389 168 HOH HOH A . C 3 HOH 90 390 39 HOH HOH A . C 3 HOH 91 391 72 HOH HOH A . C 3 HOH 92 392 161 HOH HOH A . C 3 HOH 93 393 124 HOH HOH A . C 3 HOH 94 394 34 HOH HOH A . C 3 HOH 95 395 60 HOH HOH A . C 3 HOH 96 396 19 HOH HOH A . C 3 HOH 97 397 115 HOH HOH A . C 3 HOH 98 398 74 HOH HOH A . C 3 HOH 99 399 87 HOH HOH A . C 3 HOH 100 400 133 HOH HOH A . C 3 HOH 101 401 15 HOH HOH A . C 3 HOH 102 402 114 HOH HOH A . C 3 HOH 103 403 92 HOH HOH A . C 3 HOH 104 404 21 HOH HOH A . C 3 HOH 105 405 28 HOH HOH A . C 3 HOH 106 406 8 HOH HOH A . C 3 HOH 107 407 170 HOH HOH A . C 3 HOH 108 408 121 HOH HOH A . C 3 HOH 109 409 48 HOH HOH A . C 3 HOH 110 410 17 HOH HOH A . C 3 HOH 111 411 37 HOH HOH A . C 3 HOH 112 412 24 HOH HOH A . C 3 HOH 113 413 84 HOH HOH A . C 3 HOH 114 414 70 HOH HOH A . C 3 HOH 115 415 130 HOH HOH A . C 3 HOH 116 416 57 HOH HOH A . C 3 HOH 117 417 105 HOH HOH A . C 3 HOH 118 418 73 HOH HOH A . C 3 HOH 119 419 159 HOH HOH A . C 3 HOH 120 420 113 HOH HOH A . C 3 HOH 121 421 98 HOH HOH A . C 3 HOH 122 422 154 HOH HOH A . C 3 HOH 123 423 7 HOH HOH A . C 3 HOH 124 424 18 HOH HOH A . C 3 HOH 125 425 166 HOH HOH A . C 3 HOH 126 426 22 HOH HOH A . C 3 HOH 127 427 216 HOH HOH A . C 3 HOH 128 428 195 HOH HOH A . C 3 HOH 129 429 109 HOH HOH A . C 3 HOH 130 430 9 HOH HOH A . C 3 HOH 131 431 165 HOH HOH A . C 3 HOH 132 432 146 HOH HOH A . C 3 HOH 133 433 199 HOH HOH A . C 3 HOH 134 434 143 HOH HOH A . C 3 HOH 135 435 71 HOH HOH A . C 3 HOH 136 436 38 HOH HOH A . C 3 HOH 137 437 162 HOH HOH A . C 3 HOH 138 438 108 HOH HOH A . C 3 HOH 139 439 120 HOH HOH A . C 3 HOH 140 440 25 HOH HOH A . C 3 HOH 141 441 41 HOH HOH A . C 3 HOH 142 442 202 HOH HOH A . C 3 HOH 143 443 111 HOH HOH A . C 3 HOH 144 444 80 HOH HOH A . C 3 HOH 145 445 97 HOH HOH A . C 3 HOH 146 446 107 HOH HOH A . C 3 HOH 147 447 59 HOH HOH A . C 3 HOH 148 448 147 HOH HOH A . C 3 HOH 149 449 217 HOH HOH A . C 3 HOH 150 450 141 HOH HOH A . C 3 HOH 151 451 127 HOH HOH A . C 3 HOH 152 452 164 HOH HOH A . C 3 HOH 153 453 182 HOH HOH A . C 3 HOH 154 454 194 HOH HOH A . C 3 HOH 155 455 103 HOH HOH A . C 3 HOH 156 456 176 HOH HOH A . C 3 HOH 157 457 193 HOH HOH A . C 3 HOH 158 458 185 HOH HOH A . C 3 HOH 159 459 214 HOH HOH A . C 3 HOH 160 460 129 HOH HOH A . C 3 HOH 161 461 45 HOH HOH A . C 3 HOH 162 462 148 HOH HOH A . C 3 HOH 163 463 210 HOH HOH A . C 3 HOH 164 464 153 HOH HOH A . C 3 HOH 165 465 186 HOH HOH A . C 3 HOH 166 466 163 HOH HOH A . C 3 HOH 167 467 69 HOH HOH A . C 3 HOH 168 468 142 HOH HOH A . C 3 HOH 169 469 160 HOH HOH A . C 3 HOH 170 470 56 HOH HOH A . C 3 HOH 171 471 119 HOH HOH A . C 3 HOH 172 472 101 HOH HOH A . C 3 HOH 173 473 117 HOH HOH A . C 3 HOH 174 474 197 HOH HOH A . C 3 HOH 175 475 215 HOH HOH A . C 3 HOH 176 476 90 HOH HOH A . C 3 HOH 177 477 123 HOH HOH A . C 3 HOH 178 478 140 HOH HOH A . C 3 HOH 179 479 100 HOH HOH A . C 3 HOH 180 480 220 HOH HOH A . C 3 HOH 181 481 178 HOH HOH A . C 3 HOH 182 482 177 HOH HOH A . C 3 HOH 183 483 96 HOH HOH A . C 3 HOH 184 484 26 HOH HOH A . C 3 HOH 185 485 187 HOH HOH A . C 3 HOH 186 486 156 HOH HOH A . C 3 HOH 187 487 172 HOH HOH A . C 3 HOH 188 488 91 HOH HOH A . C 3 HOH 189 489 169 HOH HOH A . C 3 HOH 190 490 93 HOH HOH A . C 3 HOH 191 491 206 HOH HOH A . C 3 HOH 192 492 192 HOH HOH A . C 3 HOH 193 493 64 HOH HOH A . C 3 HOH 194 494 189 HOH HOH A . C 3 HOH 195 495 196 HOH HOH A . C 3 HOH 196 496 138 HOH HOH A . C 3 HOH 197 497 122 HOH HOH A . C 3 HOH 198 498 52 HOH HOH A . C 3 HOH 199 499 144 HOH HOH A . C 3 HOH 200 500 179 HOH HOH A . C 3 HOH 201 501 158 HOH HOH A . C 3 HOH 202 502 219 HOH HOH A . C 3 HOH 203 503 211 HOH HOH A . C 3 HOH 204 504 58 HOH HOH A . C 3 HOH 205 505 184 HOH HOH A . C 3 HOH 206 506 150 HOH HOH A . C 3 HOH 207 507 213 HOH HOH A . C 3 HOH 208 508 207 HOH HOH A . C 3 HOH 209 509 61 HOH HOH A . C 3 HOH 210 510 86 HOH HOH A . C 3 HOH 211 511 110 HOH HOH A . C 3 HOH 212 512 55 HOH HOH A . C 3 HOH 213 513 149 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 64 ? CG ? A LYS 67 CG 2 1 Y 0 A LYS 64 ? CD ? A LYS 67 CD 3 1 Y 0 A LYS 64 ? CE ? A LYS 67 CE 4 1 Y 0 A LYS 64 ? NZ ? A LYS 67 NZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.entry_id 5LMW _cell.length_a 65.680 _cell.length_b 65.680 _cell.length_c 88.802 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LMW _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LMW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.35 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 63.3 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Tri-sodium Citrate PEG 3000 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-09-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8729 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8729 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5LMW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.44 _reflns.d_resolution_high 1.5 _reflns.number_obs 31805 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22 _reflns.B_iso_Wilson_estimate 23.68 _reflns.pdbx_redundancy 6.8 _reflns.pdbx_CC_half ? # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.58 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.627 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5LMW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 31733 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.58 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.196 _refine.ls_R_factor_R_free_error 0.000 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.020 _refine.ls_number_reflns_R_free 1592 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 30.98 _refine.aniso_B[1][1] 3.09360 _refine.aniso_B[2][2] 3.09360 _refine.aniso_B[3][3] -6.18720 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 4Y7M _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.059 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.056 _refine.pdbx_overall_SU_R_Blow_DPI 0.066 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.062 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 5LMW _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 934 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 213 _refine_hist.number_atoms_total 1153 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 19.58 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 978 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 0.98 ? 2.00 1321 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 344 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 22 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 149 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 978 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 4.43 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 14.51 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 119 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1199 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 16 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.55 _refine_ls_shell.number_reflns_R_work 2708 _refine_ls_shell.R_factor_R_work 0.218 _refine_ls_shell.percent_reflns_obs 99.48 _refine_ls_shell.R_factor_R_free 0.216 _refine_ls_shell.R_factor_R_free_error 0.000 _refine_ls_shell.percent_reflns_R_free 5.02 _refine_ls_shell.number_reflns_R_free 143 _refine_ls_shell.number_reflns_all 2851 _refine_ls_shell.R_factor_all 0.218 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5LMW _struct.title 'Llama nanobody PorM_02' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LMW _struct_keywords.text 'NANOBODY, PORPHYROMONAS GINGIVALIS, TYPE 9 SECRETION SYSTEM, immune system' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LMW _struct_ref.pdbx_db_accession 5LMW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LMW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5LMW _struct_ref_seq.db_align_beg -1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 119 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 119 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 110 ? 1 MORE -0 ? 1 'SSA (A^2)' 6520 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 30 ? TYR A 34 ? THR A 28 TYR A 32 5 ? 5 HELX_P HELX_P2 AA2 LYS A 89 ? THR A 93 ? LYS A 83 THR A 87 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 24 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 98 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.023 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 5 ? SER A 9 ? GLN A 3 SER A 7 AA1 2 LEU A 20 ? SER A 27 ? LEU A 18 SER A 25 AA1 3 THR A 80 ? MET A 85 ? THR A 77 MET A 82 AA1 4 PHE A 70 ? ASP A 75 ? PHE A 67 ASP A 72 AA2 1 GLY A 12 ? GLN A 15 ? GLY A 10 GLN A 13 AA2 2 THR A 117 ? SER A 122 ? THR A 107 SER A 112 AA2 3 ALA A 94 ? ASP A 101 ? ALA A 88 ASP A 95 AA2 4 ASN A 35 ? GLN A 41 ? ASN A 33 GLN A 39 AA2 5 GLU A 48 ? ILE A 53 ? GLU A 46 ILE A 51 AA2 6 ARG A 59 ? TYR A 61 ? ARG A 56 TYR A 58 AA3 1 GLY A 12 ? GLN A 15 ? GLY A 10 GLN A 13 AA3 2 THR A 117 ? SER A 122 ? THR A 107 SER A 112 AA3 3 ALA A 94 ? ASP A 101 ? ALA A 88 ASP A 95 AA3 4 TYR A 112 ? TRP A 113 ? TYR A 102 TRP A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 9 ? N SER A 7 O SER A 23 ? O SER A 21 AA1 2 3 N LEU A 20 ? N LEU A 18 O MET A 85 ? O MET A 82 AA1 3 4 O THR A 80 ? O THR A 77 N ASP A 75 ? N ASP A 72 AA2 1 2 N VAL A 14 ? N VAL A 12 O THR A 120 ? O THR A 110 AA2 2 3 O THR A 117 ? O THR A 107 N TYR A 96 ? N TYR A 90 AA2 3 4 O ALA A 99 ? O ALA A 93 N GLY A 37 ? N GLY A 35 AA2 4 5 N TRP A 38 ? N TRP A 36 O ALA A 51 ? O ALA A 49 AA2 5 6 N SER A 52 ? N SER A 50 O THR A 60 ? O THR A 57 AA3 1 2 N VAL A 14 ? N VAL A 12 O THR A 120 ? O THR A 110 AA3 2 3 O THR A 117 ? O THR A 107 N TYR A 96 ? N TYR A 90 AA3 3 4 N ALA A 100 ? N ALA A 94 O TYR A 112 ? O TYR A 102 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 200 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue GOL A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LEU A 104 ? LEU A 98 . ? 8_555 ? 2 AC1 5 THR A 105 ? THR A 99 . ? 8_555 ? 3 AC1 5 ARG A 106 ? ARG A 100 . ? 8_555 ? 4 AC1 5 SER A 107 A SER A 100 . ? 8_555 ? 5 AC1 5 HOH C . ? HOH A 366 . ? 8_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 61 ? ? 59.43 -97.95 2 1 SER A 62 ? ? -88.11 42.05 3 1 THR A 99 ? ? -126.17 -70.59 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 4.5416 _pdbx_refine_tls.origin_y -19.3186 _pdbx_refine_tls.origin_z 9.4822 _pdbx_refine_tls.T[1][1] -0.0727 _pdbx_refine_tls.T[2][2] -0.0048 _pdbx_refine_tls.T[3][3] -0.0001 _pdbx_refine_tls.T[1][2] 0.0062 _pdbx_refine_tls.T[1][3] -0.0093 _pdbx_refine_tls.T[2][3] 0.0108 _pdbx_refine_tls.L[1][1] 2.0951 _pdbx_refine_tls.L[2][2] 1.1975 _pdbx_refine_tls.L[3][3] 0.7778 _pdbx_refine_tls.L[1][2] 0.6078 _pdbx_refine_tls.L[1][3] 0.4695 _pdbx_refine_tls.L[2][3] 0.0095 _pdbx_refine_tls.S[1][1] -0.0221 _pdbx_refine_tls.S[1][2] 0.1178 _pdbx_refine_tls.S[1][3] -0.0094 _pdbx_refine_tls.S[2][1] -0.0573 _pdbx_refine_tls.S[2][2] 0.0287 _pdbx_refine_tls.S[2][3] -0.0116 _pdbx_refine_tls.S[3][1] 0.0339 _pdbx_refine_tls.S[3][2] -0.0196 _pdbx_refine_tls.S[3][3] -0.0065 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{ A|* }' # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 513 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.85 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -1 ? A MET 1 2 1 Y 1 A ALA 0 ? A ALA 2 3 1 Y 1 A GLN 1 ? A GLN 3 4 1 Y 1 A HIS 114 ? A HIS 124 5 1 Y 1 A HIS 115 ? A HIS 125 6 1 Y 1 A HIS 116 ? A HIS 126 7 1 Y 1 A HIS 117 ? A HIS 127 8 1 Y 1 A HIS 118 ? A HIS 128 9 1 Y 1 A HIS 119 ? A HIS 129 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # _pdbx_audit_support.funding_organization 'French National Research Agency' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4Y7M _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5LMW _atom_sites.fract_transf_matrix[1][1] 0.015225 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015225 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011261 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_