data_5LR4 # _entry.id 5LR4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LR4 WWPDB D_1200001231 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LR4 _pdbx_database_status.recvd_initial_deposition_date 2016-08-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, L.' 1 'Lilley, D.M.J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'EMBO Rep.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1469-3178 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 1631 _citation.page_last 1645 _citation.title 'Control of box C/D snoRNP assembly by N(6)-methylation of adenine.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.15252/embr.201743967 _citation.pdbx_database_id_PubMed 28623187 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Ashraf, S.' 2 ? primary 'Wang, J.' 3 ? primary 'Lilley, D.M.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5LR4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 49.870 _cell.length_a_esd ? _cell.length_b 49.870 _cell.length_b_esd ? _cell.length_c 123.735 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3') ; 3324.911 4 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 3 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'G(CBV)CGG(6MZ)UGGC' _entity_poly.pdbx_seq_one_letter_code_can GCCGGAUGGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 CBV n 1 3 C n 1 4 G n 1 5 G n 1 6 6MZ n 1 7 U n 1 8 G n 1 9 G n 1 10 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LR4 _struct_ref.pdbx_db_accession 5LR4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LR4 A 1 ? 10 ? 5LR4 1 ? 10 ? 1 10 2 1 5LR4 B 1 ? 10 ? 5LR4 1 ? 10 ? 1 10 3 1 5LR4 C 1 ? 10 ? 5LR4 1 ? 10 ? 1 10 4 1 5LR4 D 1 ? 10 ? 5LR4 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6MZ 'RNA linking' n "N6-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LR4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Sodium Chloride, 0.1M Bis-Tris pH 6.5, 1.5 M Ammonium Sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-02-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9196 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9196 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5LR4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.72 _reflns.d_resolution_low 46.26 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17404 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.0 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.7 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.72 _reflns_shell.d_res_low 1.76 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.2 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.898 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LR4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 46.255 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14934 _refine.ls_number_reflns_R_free 1268 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.81 _refine.ls_percent_reflns_R_free 4.74 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2704 _refine.ls_R_factor_R_free 0.2888 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2694 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 40.73 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.38 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 872 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 932 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 46.255 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 972 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 4.218 ? 1524 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 20.309 ? 468 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.060 ? 188 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 40 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8000 1.8721 . . 127 2949 100.00 . . . 0.5255 . 0.5114 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8721 1.9573 . . 155 2693 93.00 . . . 0.5091 . 0.4684 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9573 2.0605 . . 127 2842 96.00 . . . 0.3781 . 0.4036 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0605 2.1896 . . 165 2854 98.00 . . . 0.3552 . 0.3766 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1896 2.3586 . . 162 2835 98.00 . . . 0.3661 . 0.3682 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3586 2.5960 . . 113 2834 96.00 . . . 0.3480 . 0.3500 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5960 2.9716 . . 130 2811 96.00 . . . 0.3204 . 0.3031 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9716 3.7436 . . 147 2807 96.00 . . . 0.2624 . 0.2362 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7436 46.2701 . . 142 2873 98.00 . . . 0.1960 . 0.1670 . . . . . . . . . . # _struct.entry_id 5LR4 _struct.title 'RNA duplex has central consecutive GA pairs flanked by G-U basepairs with a methyl group on the adenine N6' _struct.pdbx_descriptor ;RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LR4 _struct_keywords.text 'N6-methyladenine, RNA folding, Watson-Crick basepairs, Hoogsteen-sugar edge A-G basepair, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A G 1 "O3'" ? ? ? 1_555 A CBV 2 P ? ? A G 1 A CBV 2 1_555 ? ? ? ? ? ? ? 1.619 ? covale2 covale one ? A CBV 2 "O3'" ? ? ? 1_555 A C 3 P ? ? A CBV 2 A C 3 1_555 ? ? ? ? ? ? ? 1.609 ? covale3 covale both ? A G 5 "O3'" ? ? ? 1_555 A 6MZ 6 P ? ? A G 5 A 6MZ 6 1_555 ? ? ? ? ? ? ? 1.612 ? covale4 covale both ? A 6MZ 6 "O3'" ? ? ? 1_555 A U 7 P ? ? A 6MZ 6 A U 7 1_555 ? ? ? ? ? ? ? 1.580 ? covale5 covale both ? B G 1 "O3'" ? ? ? 1_555 B CBV 2 P ? ? B G 1 B CBV 2 1_555 ? ? ? ? ? ? ? 1.624 ? covale6 covale one ? B CBV 2 "O3'" ? ? ? 1_555 B C 3 P ? ? B CBV 2 B C 3 1_555 ? ? ? ? ? ? ? 1.604 ? covale7 covale both ? B G 5 "O3'" ? ? ? 1_555 B 6MZ 6 P ? ? B G 5 B 6MZ 6 1_555 ? ? ? ? ? ? ? 1.602 ? covale8 covale both ? B 6MZ 6 "O3'" ? ? ? 1_555 B U 7 P ? ? B 6MZ 6 B U 7 1_555 ? ? ? ? ? ? ? 1.602 ? covale9 covale both ? C G 1 "O3'" ? ? ? 1_555 C CBV 2 P ? ? C G 1 C CBV 2 1_555 ? ? ? ? ? ? ? 1.623 ? covale10 covale one ? C CBV 2 "O3'" ? ? ? 1_555 C C 3 P ? ? C CBV 2 C C 3 1_555 ? ? ? ? ? ? ? 1.607 ? metalc1 metalc ? ? C CBV 2 "O2'" ? ? ? 1_555 F NA . NA ? ? C CBV 2 C NA 101 1_555 ? ? ? ? ? ? ? 2.985 ? covale11 covale both ? C G 5 "O3'" ? ? ? 1_555 C 6MZ 6 P ? ? C G 5 C 6MZ 6 1_555 ? ? ? ? ? ? ? 1.622 ? covale12 covale both ? C 6MZ 6 "O3'" ? ? ? 1_555 C U 7 P ? ? C 6MZ 6 C U 7 1_555 ? ? ? ? ? ? ? 1.601 ? covale13 covale both ? D G 1 "O3'" ? ? ? 1_555 D CBV 2 P ? ? D G 1 D CBV 2 1_555 ? ? ? ? ? ? ? 1.622 ? covale14 covale one ? D CBV 2 "O3'" ? ? ? 1_555 D C 3 P ? ? D CBV 2 D C 3 1_555 ? ? ? ? ? ? ? 1.600 ? covale15 covale both ? D G 5 "O3'" ? ? ? 1_555 D 6MZ 6 P ? ? D G 5 D 6MZ 6 1_555 ? ? ? ? ? ? ? 1.613 ? covale16 covale both ? D 6MZ 6 "O3'" ? ? ? 1_555 D U 7 P ? ? D 6MZ 6 D U 7 1_555 ? ? ? ? ? ? ? 1.611 ? metalc2 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? C NA 101 C HOH 207 1_555 ? ? ? ? ? ? ? 2.600 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A CBV 2 N3 ? ? ? 1_555 B G 9 N1 ? ? A CBV 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A CBV 2 N4 ? ? ? 1_555 B G 9 O6 ? ? A CBV 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A CBV 2 O2 ? ? ? 1_555 B G 9 N2 ? ? A CBV 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B U 7 O4 ? ? A G 4 B U 7 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog11 hydrog ? ? A U 7 O4 ? ? ? 1_555 B G 4 N2 ? ? A U 7 B G 4 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog12 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 9 N1 ? ? ? 1_555 B CBV 2 N3 ? ? A G 9 B CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 9 N2 ? ? ? 1_555 B CBV 2 O2 ? ? A G 9 B CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 B CBV 2 N4 ? ? A G 9 B CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 1 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 1 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 1 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C CBV 2 N3 ? ? ? 1_555 D G 9 N1 ? ? C CBV 2 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C CBV 2 N4 ? ? ? 1_555 D G 9 O6 ? ? C CBV 2 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C CBV 2 O2 ? ? ? 1_555 D G 9 N2 ? ? C CBV 2 D G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C G 4 N2 ? ? ? 1_555 D U 7 O4 ? ? C G 4 D U 7 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog31 hydrog ? ? C U 7 O4 ? ? ? 1_555 D G 4 N2 ? ? C U 7 D G 4 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog32 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C G 9 N1 ? ? ? 1_555 D CBV 2 N3 ? ? C G 9 D CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C G 9 N2 ? ? ? 1_555 D CBV 2 O2 ? ? C G 9 D CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C G 9 O6 ? ? ? 1_555 D CBV 2 N4 ? ? C G 9 D CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 10 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 10 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 10 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 1 'binding site for residue NA A 101' AC2 Software C NA 101 ? 3 'binding site for residue NA C 101' AC3 Software C NA 102 ? 1 'binding site for residue NA C 102' AC4 Software D NA 101 ? 1 'binding site for residue NA D 101' AC5 Software B G 1 ? 9 'binding site for Di-nucleotide G B 1 and CBV B 2' AC6 Software B CBV 2 ? 9 'binding site for Di-nucleotide CBV B 2 and C B 3' AC7 Software B G 5 ? 7 'binding site for Di-nucleotide G B 5 and 6MZ B 6' AC8 Software C G 1 ? 9 'binding site for Di-nucleotide G C 1 and CBV C 2' AC9 Software C CBV 2 ? 12 'binding site for Di-nucleotide CBV C 2 and C C 3' AD1 Software C G 5 ? 7 'binding site for Di-nucleotide G C 5 and 6MZ C 6' AD2 Software D G 1 ? 8 'binding site for Di-nucleotide G D 1 and CBV D 2' AD3 Software D CBV 2 ? 8 'binding site for Di-nucleotide CBV D 2 and C D 3' AD4 Software D G 5 ? 10 'binding site for Di-nucleotide G D 5 and 6MZ D 6' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 CBV A 2 ? CBV A 2 . ? 1_555 ? 2 AC2 3 CBV C 2 ? CBV C 2 . ? 1_555 ? 3 AC2 3 C C 3 ? C C 3 . ? 1_555 ? 4 AC2 3 HOH K . ? HOH C 207 . ? 1_555 ? 5 AC3 1 CBV C 2 ? CBV C 2 . ? 1_555 ? 6 AC4 1 G D 1 ? G D 1 . ? 1_555 ? 7 AC5 9 G A 1 ? G A 1 . ? 4_455 ? 8 AC5 9 G A 9 ? G A 9 . ? 1_555 ? 9 AC5 9 C A 10 ? C A 10 . ? 1_555 ? 10 AC5 9 HOH I . ? HOH A 207 . ? 1_555 ? 11 AC5 9 C B 3 ? C B 3 . ? 1_555 ? 12 AC5 9 C B 10 ? C B 10 . ? 4_455 ? 13 AC5 9 HOH J . ? HOH B 103 . ? 1_555 ? 14 AC5 9 HOH J . ? HOH B 104 . ? 1_555 ? 15 AC5 9 HOH J . ? HOH B 109 . ? 1_555 ? 16 AC6 9 G A 8 ? G A 8 . ? 1_555 ? 17 AC6 9 G A 9 ? G A 9 . ? 1_555 ? 18 AC6 9 C A 10 ? C A 10 . ? 1_555 ? 19 AC6 9 HOH I . ? HOH A 207 . ? 1_555 ? 20 AC6 9 G B 1 ? G B 1 . ? 1_555 ? 21 AC6 9 G B 4 ? G B 4 . ? 1_555 ? 22 AC6 9 HOH J . ? HOH B 109 . ? 1_555 ? 23 AC6 9 HOH J . ? HOH B 111 . ? 1_555 ? 24 AC6 9 HOH J . ? HOH B 115 . ? 1_555 ? 25 AC7 7 G A 5 ? G A 5 . ? 1_555 ? 26 AC7 7 6MZ A 6 ? 6MZ A 6 . ? 1_555 ? 27 AC7 7 G B 4 ? G B 4 . ? 1_555 ? 28 AC7 7 U B 7 ? U B 7 . ? 1_555 ? 29 AC7 7 HOH J . ? HOH B 113 . ? 1_555 ? 30 AC7 7 G C 9 ? G C 9 . ? 4_445 ? 31 AC7 7 C C 10 ? C C 10 . ? 4_445 ? 32 AC8 9 C C 3 ? C C 3 . ? 1_555 ? 33 AC8 9 NA F . ? NA C 101 . ? 1_555 ? 34 AC8 9 NA G . ? NA C 102 . ? 1_555 ? 35 AC8 9 HOH K . ? HOH C 206 . ? 1_555 ? 36 AC8 9 HOH K . ? HOH C 207 . ? 1_555 ? 37 AC8 9 HOH K . ? HOH C 210 . ? 1_555 ? 38 AC8 9 G D 9 ? G D 9 . ? 1_555 ? 39 AC8 9 C D 10 ? C D 10 . ? 1_555 ? 40 AC8 9 C D 10 ? C D 10 . ? 7_465 ? 41 AC9 12 C B 10 ? C B 10 . ? 1_555 ? 42 AC9 12 G C 1 ? G C 1 . ? 1_555 ? 43 AC9 12 G C 4 ? G C 4 . ? 1_555 ? 44 AC9 12 NA F . ? NA C 101 . ? 1_555 ? 45 AC9 12 NA G . ? NA C 102 . ? 1_555 ? 46 AC9 12 HOH K . ? HOH C 202 . ? 1_555 ? 47 AC9 12 HOH K . ? HOH C 205 . ? 1_555 ? 48 AC9 12 HOH K . ? HOH C 207 . ? 1_555 ? 49 AC9 12 HOH K . ? HOH C 211 . ? 1_555 ? 50 AC9 12 G D 8 ? G D 8 . ? 1_555 ? 51 AC9 12 G D 9 ? G D 9 . ? 1_555 ? 52 AC9 12 C D 10 ? C D 10 . ? 1_555 ? 53 AD1 7 G C 4 ? G C 4 . ? 1_555 ? 54 AD1 7 U C 7 ? U C 7 . ? 1_555 ? 55 AD1 7 HOH K . ? HOH C 208 . ? 1_555 ? 56 AD1 7 G D 5 ? G D 5 . ? 1_555 ? 57 AD1 7 6MZ D 6 ? 6MZ D 6 . ? 1_555 ? 58 AD1 7 HOH L . ? HOH D 205 . ? 1_555 ? 59 AD1 7 HOH L . ? HOH D 208 . ? 1_555 ? 60 AD2 8 G C 9 ? G C 9 . ? 1_555 ? 61 AD2 8 C C 10 ? C C 10 . ? 8_554 ? 62 AD2 8 C C 10 ? C C 10 . ? 1_555 ? 63 AD2 8 HOH K . ? HOH C 204 . ? 8_554 ? 64 AD2 8 C D 3 ? C D 3 . ? 1_555 ? 65 AD2 8 NA H . ? NA D 101 . ? 1_555 ? 66 AD2 8 HOH L . ? HOH D 207 . ? 1_555 ? 67 AD2 8 HOH L . ? HOH D 214 . ? 1_555 ? 68 AD3 8 U A 7 ? U A 7 . ? 3_454 ? 69 AD3 8 G C 8 ? G C 8 . ? 1_555 ? 70 AD3 8 G C 9 ? G C 9 . ? 1_555 ? 71 AD3 8 C C 10 ? C C 10 . ? 1_555 ? 72 AD3 8 G D 1 ? G D 1 . ? 1_555 ? 73 AD3 8 G D 4 ? G D 4 . ? 1_555 ? 74 AD3 8 HOH L . ? HOH D 207 . ? 1_555 ? 75 AD3 8 HOH L . ? HOH D 211 . ? 1_555 ? 76 AD4 10 G C 5 ? G C 5 . ? 1_555 ? 77 AD4 10 6MZ C 6 ? 6MZ C 6 . ? 1_555 ? 78 AD4 10 U C 7 ? U C 7 . ? 1_555 ? 79 AD4 10 G D 4 ? G D 4 . ? 1_555 ? 80 AD4 10 U D 7 ? U D 7 . ? 1_555 ? 81 AD4 10 HOH L . ? HOH D 201 . ? 1_555 ? 82 AD4 10 HOH L . ? HOH D 204 . ? 1_555 ? 83 AD4 10 HOH L . ? HOH D 205 . ? 1_555 ? 84 AD4 10 HOH L . ? HOH D 208 . ? 1_555 ? 85 AD4 10 HOH L . ? HOH D 212 . ? 1_555 ? # _atom_sites.entry_id 5LR4 _atom_sites.fract_transf_matrix[1][1] 0.020052 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020052 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008082 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C H N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 CBV 2 2 2 CBV CBV A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 6MZ 6 6 6 6MZ 6MZ A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 CBV 2 2 2 CBV CBV B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 6MZ 6 6 6 6MZ 6MZ B . n B 1 7 U 7 7 7 U U B . n B 1 8 G 8 8 8 G G B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 CBV 2 2 2 CBV CBV C . n C 1 3 C 3 3 3 C C C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 6MZ 6 6 6 6MZ 6MZ C . n C 1 7 U 7 7 7 U U C . n C 1 8 G 8 8 8 G G C . n C 1 9 G 9 9 9 G G C . n C 1 10 C 10 10 10 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 CBV 2 2 2 CBV CBV D . n D 1 3 C 3 3 3 C C D . n D 1 4 G 4 4 4 G G D . n D 1 5 G 5 5 5 G G D . n D 1 6 6MZ 6 6 6 6MZ 6MZ D . n D 1 7 U 7 7 7 U U D . n D 1 8 G 8 8 8 G G D . n D 1 9 G 9 9 9 G G D . n D 1 10 C 10 10 10 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA 1 101 2 NA NA A . F 2 NA 1 101 1 NA NA C . G 2 NA 1 102 4 NA NA C . H 2 NA 1 101 3 NA NA D . I 3 HOH 1 201 49 HOH HOH A . I 3 HOH 2 202 29 HOH HOH A . I 3 HOH 3 203 45 HOH HOH A . I 3 HOH 4 204 52 HOH HOH A . I 3 HOH 5 205 21 HOH HOH A . I 3 HOH 6 206 5 HOH HOH A . I 3 HOH 7 207 33 HOH HOH A . I 3 HOH 8 208 38 HOH HOH A . I 3 HOH 9 209 43 HOH HOH A . I 3 HOH 10 210 25 HOH HOH A . I 3 HOH 11 211 46 HOH HOH A . J 3 HOH 1 101 26 HOH HOH B . J 3 HOH 2 102 15 HOH HOH B . J 3 HOH 3 103 47 HOH HOH B . J 3 HOH 4 104 19 HOH HOH B . J 3 HOH 5 105 4 HOH HOH B . J 3 HOH 6 106 30 HOH HOH B . J 3 HOH 7 107 1 HOH HOH B . J 3 HOH 8 108 37 HOH HOH B . J 3 HOH 9 109 31 HOH HOH B . J 3 HOH 10 110 8 HOH HOH B . J 3 HOH 11 111 42 HOH HOH B . J 3 HOH 12 112 32 HOH HOH B . J 3 HOH 13 113 34 HOH HOH B . J 3 HOH 14 114 44 HOH HOH B . J 3 HOH 15 115 48 HOH HOH B . J 3 HOH 16 116 13 HOH HOH B . K 3 HOH 1 201 24 HOH HOH C . K 3 HOH 2 202 2 HOH HOH C . K 3 HOH 3 203 56 HOH HOH C . K 3 HOH 4 204 22 HOH HOH C . K 3 HOH 5 205 18 HOH HOH C . K 3 HOH 6 206 23 HOH HOH C . K 3 HOH 7 207 12 HOH HOH C . K 3 HOH 8 208 28 HOH HOH C . K 3 HOH 9 209 51 HOH HOH C . K 3 HOH 10 210 36 HOH HOH C . K 3 HOH 11 211 7 HOH HOH C . K 3 HOH 12 212 39 HOH HOH C . L 3 HOH 1 201 41 HOH HOH D . L 3 HOH 2 202 3 HOH HOH D . L 3 HOH 3 203 6 HOH HOH D . L 3 HOH 4 204 54 HOH HOH D . L 3 HOH 5 205 17 HOH HOH D . L 3 HOH 6 206 16 HOH HOH D . L 3 HOH 7 207 14 HOH HOH D . L 3 HOH 8 208 40 HOH HOH D . L 3 HOH 9 209 10 HOH HOH D . L 3 HOH 10 210 11 HOH HOH D . L 3 HOH 11 211 20 HOH HOH D . L 3 HOH 12 212 27 HOH HOH D . L 3 HOH 13 213 9 HOH HOH D . L 3 HOH 14 214 55 HOH HOH D . L 3 HOH 15 215 53 HOH HOH D . L 3 HOH 16 216 35 HOH HOH D . L 3 HOH 17 217 50 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,I,J 2 1 C,D,F,G,H,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id "O2'" _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id C _pdbx_struct_conn_angle.ptnr1_label_comp_id CBV _pdbx_struct_conn_angle.ptnr1_label_seq_id 2 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id C _pdbx_struct_conn_angle.ptnr1_auth_comp_id CBV _pdbx_struct_conn_angle.ptnr1_auth_seq_id 2 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id F _pdbx_struct_conn_angle.ptnr2_label_comp_id NA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id C _pdbx_struct_conn_angle.ptnr2_auth_comp_id NA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 101 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id K _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id C _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 207 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 100.7 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-21 2 'Structure model' 1 1 2017-06-28 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 2 0 2019-02-20 5 'Structure model' 2 1 2019-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Polymer sequence' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' diffrn_source 5 4 'Structure model' entity_poly 6 4 'Structure model' pdbx_seq_map_depositor_info 7 5 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.pdbx_database_id_DOI' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 10 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 11 4 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 12 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -4.5595 27.1027 -1.8188 0.4792 0.3438 0.3345 0.0460 -0.0329 -0.0490 7.6916 6.2127 3.5589 3.2877 -5.1216 -2.1760 0.2361 -0.8306 0.3165 0.6493 0.1215 -0.1151 -0.5464 0.6427 -0.3292 'X-RAY DIFFRACTION' 2 ? refined 2.2278 17.6981 13.6024 0.8878 0.6981 0.5320 0.1217 -0.2608 0.0452 7.0525 6.4568 4.2036 5.6718 4.6444 5.0237 0.8312 -0.0013 -0.8422 0.0855 0.0082 -0.5863 1.0857 0.0357 -0.6876 'X-RAY DIFFRACTION' 3 ? refined 3.5097 26.2594 11.1502 0.6448 0.5045 0.4017 -0.0131 -0.1114 -0.0723 6.7259 3.3216 5.3013 0.1838 0.6270 1.3986 0.6935 0.6323 -0.6248 -0.7282 -0.2778 -0.0827 -0.0723 0.0525 -0.3858 'X-RAY DIFFRACTION' 4 ? refined -5.8704 18.2876 -3.6959 0.5733 0.2615 0.3402 0.0566 -0.0716 -0.0751 6.2088 8.2511 3.6191 -4.9681 2.2955 -5.2811 -0.2049 -0.3990 -0.1960 0.1941 0.5441 -0.2517 0.1690 0.2112 -0.3374 'X-RAY DIFFRACTION' 5 ? refined -18.9737 27.8314 -8.9138 0.5461 0.5524 0.3344 0.0831 -0.0989 -0.0352 2.9182 8.5667 6.4287 -0.6610 -2.7771 4.4099 0.4156 0.5227 -0.3109 -0.9472 -0.0465 0.2534 -0.2814 -1.4860 -0.3252 'X-RAY DIFFRACTION' 6 ? refined -27.6328 18.0519 -23.0861 1.1682 0.6183 0.6367 -0.2197 -0.4147 -0.0301 0.9225 2.8405 0.5558 1.4088 -0.6423 -0.6959 0.7742 -0.0792 -1.0497 0.6893 0.3771 -0.1947 1.2628 0.0964 -0.0983 'X-RAY DIFFRACTION' 7 ? refined -27.6564 27.7818 -23.4264 0.4596 0.3906 0.3915 0.0052 -0.1147 0.0016 2.0023 8.8021 8.6419 -4.6734 0.5017 -1.8252 0.9015 -1.4882 -0.4167 1.0152 0.0588 -0.3251 -0.2217 -0.2646 -0.7433 'X-RAY DIFFRACTION' 8 ? refined -20.2491 19.8793 -7.7171 0.6561 0.7347 0.3908 -0.2203 -0.1533 0.2915 1.4734 3.8231 0.2338 -0.5166 0.2752 0.7252 -0.0459 -0.4444 -0.6034 -0.3855 0.9227 0.1987 0.7195 -1.8512 -0.4067 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 1:5)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 6:10)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain B and resid 1:5)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain B and resid 6:10)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain C and resid 1:5)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain C and resid 6:10)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain D and resid 1:4)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain D and resid 5:10)' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2481: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" C G 5 ? ? O3P C 6MZ 6 ? ? 0.42 2 1 "O3'" B G 1 ? ? O3P B CBV 2 ? ? 0.46 3 1 "HO2'" A C 3 ? ? "HO2'" D C 10 ? ? 1.30 4 1 "HO2'" B C 10 ? ? "HO2'" C C 3 ? ? 1.31 5 1 O C HOH 210 ? ? O C HOH 212 ? ? 2.05 6 1 "O2'" C G 8 ? ? O C HOH 201 ? ? 2.05 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 6MZ _pdbx_validate_rmsd_angle.auth_seq_id_2 6 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 6MZ _pdbx_validate_rmsd_angle.auth_seq_id_3 6 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 90.02 _pdbx_validate_rmsd_angle.angle_target_value 104.00 _pdbx_validate_rmsd_angle.angle_deviation -13.98 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.90 _pdbx_validate_rmsd_angle.linker_flag Y # _ndb_struct_conf_na.entry_id 5LR4 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 10 1_555 -0.139 -0.084 0.158 1.750 -2.552 -0.831 1 A_G1:C10_B A 1 ? B 10 ? 19 1 1 A CBV 2 1_555 B G 9 1_555 0.170 -0.021 -0.059 3.379 -6.115 0.103 2 A_CBV2:G9_B A 2 ? B 9 ? 19 1 1 A C 3 1_555 B G 8 1_555 0.229 -0.043 -0.048 -1.197 -6.143 0.860 3 A_C3:G8_B A 3 ? B 8 ? 19 1 1 A G 4 1_555 B U 7 1_555 7.713 -2.884 -0.880 -9.093 -4.921 -0.263 4 A_G4:U7_B A 4 ? B 7 ? ? ? 1 A U 7 1_555 B G 4 1_555 -7.464 -3.004 -0.923 8.518 2.980 -8.647 5 A_U7:G4_B A 7 ? B 4 ? ? ? 1 A G 8 1_555 B C 3 1_555 -0.146 -0.138 0.013 -0.903 -2.207 -2.700 6 A_G8:C3_B A 8 ? B 3 ? 19 1 1 A G 9 1_555 B CBV 2 1_555 -0.013 0.013 -0.131 -8.259 -8.489 2.374 7 A_G9:CBV2_B A 9 ? B 2 ? 19 1 1 A C 10 1_555 B G 1 1_555 0.496 -0.148 0.053 1.293 -4.218 -1.154 8 A_C10:G1_B A 10 ? B 1 ? 19 1 1 C G 1 1_555 D C 10 1_555 -0.335 -0.130 0.124 -0.636 -1.694 0.589 9 C_G1:C10_D C 1 ? D 10 ? 19 1 1 C CBV 2 1_555 D G 9 1_555 0.110 -0.019 -0.239 4.479 -8.906 1.327 10 C_CBV2:G9_D C 2 ? D 9 ? 19 1 1 C C 3 1_555 D G 8 1_555 0.270 -0.097 0.025 -2.014 -8.219 -1.394 11 C_C3:G8_D C 3 ? D 8 ? 19 1 1 C G 4 1_555 D U 7 1_555 7.726 -3.240 -0.548 -10.594 -5.327 -5.295 12 C_G4:U7_D C 4 ? D 7 ? ? ? 1 C U 7 1_555 D G 4 1_555 -7.534 -3.366 -0.625 12.707 -3.162 -5.203 13 C_U7:G4_D C 7 ? D 4 ? ? ? 1 C G 8 1_555 D C 3 1_555 -0.245 -0.065 -0.124 -0.083 -5.959 4.316 14 C_G8:C3_D C 8 ? D 3 ? 19 1 1 C G 9 1_555 D CBV 2 1_555 0.075 -0.014 -0.258 -6.664 -6.238 1.045 15 C_G9:CBV2_D C 9 ? D 2 ? 19 1 1 C C 10 1_555 D G 1 1_555 0.622 0.004 0.067 1.084 -5.055 3.767 16 C_C10:G1_D C 10 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 10 1_555 A CBV 2 1_555 B G 9 1_555 -0.291 -2.215 3.300 -0.452 0.531 31.825 -4.136 0.447 3.268 0.969 0.824 31.832 1 AA_G1CBV2:G9C10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A CBV 2 1_555 B G 9 1_555 A C 3 1_555 B G 8 1_555 -0.070 -2.262 3.285 0.374 7.430 31.847 -5.212 0.184 2.702 13.315 -0.670 32.682 2 AA_CBV2C3:G8G9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A C 3 1_555 B G 8 1_555 A G 4 1_555 B U 7 1_555 0.315 -1.161 3.839 9.815 3.856 56.760 -1.448 0.293 3.762 4.017 -10.227 57.651 3 AA_C3G4:U7G8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A U 7 1_555 B G 4 1_555 A G 8 1_555 B C 3 1_555 0.793 -1.557 3.793 -7.557 2.621 56.689 -1.789 -1.298 3.600 2.745 7.915 57.204 4 AA_U7G8:C3G4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A G 8 1_555 B C 3 1_555 A G 9 1_555 B CBV 2 1_555 -0.056 -2.005 3.385 0.892 5.093 34.191 -4.153 0.231 3.061 8.602 -1.506 34.568 5 AA_G8G9:CBV2C3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A G 9 1_555 B CBV 2 1_555 A C 10 1_555 B G 1 1_555 0.479 -2.045 3.136 1.415 -2.359 32.091 -3.273 -0.616 3.291 -4.257 -2.554 32.206 6 AA_G9C10:G1CBV2_BB A 9 ? B 2 ? A 10 ? B 1 ? 1 C G 1 1_555 D C 10 1_555 C CBV 2 1_555 D G 9 1_555 -0.279 -2.085 3.235 0.941 -1.016 32.809 -3.515 0.654 3.287 -1.797 -1.666 32.837 7 CC_G1CBV2:G9C10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C CBV 2 1_555 D G 9 1_555 C C 3 1_555 D G 8 1_555 -0.109 -2.295 3.374 -1.955 9.428 31.267 -5.603 -0.122 2.593 16.995 3.523 32.681 8 CC_CBV2C3:G8G9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C C 3 1_555 D G 8 1_555 C G 4 1_555 D U 7 1_555 -0.029 -1.316 3.836 9.271 6.445 58.203 -1.711 0.574 3.642 6.558 -9.434 59.193 9 CC_C3G4:U7G8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C U 7 1_555 D G 4 1_555 C G 8 1_555 D C 3 1_555 0.491 -1.211 3.870 -7.449 5.686 60.085 -1.515 -0.903 3.674 5.641 7.390 60.744 10 CC_U7G8:C3G4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C G 8 1_555 D C 3 1_555 C G 9 1_555 D CBV 2 1_555 -0.572 -1.810 3.413 -0.734 4.697 33.932 -3.819 0.855 3.153 7.999 1.250 34.253 11 CC_G8G9:CBV2C3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C G 9 1_555 D CBV 2 1_555 C C 10 1_555 D G 1 1_555 0.648 -1.953 3.179 0.034 -0.568 32.587 -3.383 -1.148 3.212 -1.012 -0.060 32.592 12 CC_G9C10:G1CBV2_DD C 9 ? D 2 ? C 10 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 water HOH #