data_5LW8 # _entry.id 5LW8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LW8 pdb_00005lw8 10.2210/pdb5lw8/pdb WWPDB D_1200001453 ? ? BMRB 34043 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Salt-inducible protein splicing by inteins from extremely halophilic archaea and application to scarless segmental labeling of TonB protein ; _pdbx_database_related.db_id 34043 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5LW8 _pdbx_database_status.recvd_initial_deposition_date 2016-09-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ciragan, A.' 1 'Aranko, A.S.' 2 'Tascon, I.' 3 'Iwai, H.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 428 _citation.language ? _citation.page_first 4573 _citation.page_last 4588 _citation.title 'Salt-inducible Protein Splicing in cis and trans by Inteins from Extremely Halophilic Archaea as a Novel Protein-Engineering Tool.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2016.10.006 _citation.pdbx_database_id_PubMed 27720988 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ciragan, A.' 1 ? primary 'Aranko, A.S.' 2 ? primary 'Tascon, I.' 3 ? primary 'Iwai, H.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein TonB' _entity.formula_weight 10151.667 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSFTINADGSVTDIKVVKSNTTDILNHAALEAIKSAAHLFPKPEETVH LKIPIAYSLKED ; _entity_poly.pdbx_seq_one_letter_code_can ;SNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSFTINADGSVTDIKVVKSNTTDILNHAALEAIKSAAHLFPKPEETVH LKIPIAYSLKED ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 GLU n 1 4 PHE n 1 5 LEU n 1 6 MET n 1 7 LYS n 1 8 ILE n 1 9 GLN n 1 10 THR n 1 11 ALA n 1 12 ILE n 1 13 SER n 1 14 SER n 1 15 LYS n 1 16 ASN n 1 17 ARG n 1 18 TYR n 1 19 PRO n 1 20 LYS n 1 21 MET n 1 22 ALA n 1 23 GLN n 1 24 ILE n 1 25 ARG n 1 26 GLY n 1 27 ILE n 1 28 GLU n 1 29 GLY n 1 30 GLU n 1 31 VAL n 1 32 LEU n 1 33 VAL n 1 34 SER n 1 35 PHE n 1 36 THR n 1 37 ILE n 1 38 ASN n 1 39 ALA n 1 40 ASP n 1 41 GLY n 1 42 SER n 1 43 VAL n 1 44 THR n 1 45 ASP n 1 46 ILE n 1 47 LYS n 1 48 VAL n 1 49 VAL n 1 50 LYS n 1 51 SER n 1 52 ASN n 1 53 THR n 1 54 THR n 1 55 ASP n 1 56 ILE n 1 57 LEU n 1 58 ASN n 1 59 HIS n 1 60 ALA n 1 61 ALA n 1 62 LEU n 1 63 GLU n 1 64 ALA n 1 65 ILE n 1 66 LYS n 1 67 SER n 1 68 ALA n 1 69 ALA n 1 70 HIS n 1 71 LEU n 1 72 PHE n 1 73 PRO n 1 74 LYS n 1 75 PRO n 1 76 GLU n 1 77 GLU n 1 78 THR n 1 79 VAL n 1 80 HIS n 1 81 LEU n 1 82 LYS n 1 83 ILE n 1 84 PRO n 1 85 ILE n 1 86 ALA n 1 87 TYR n 1 88 SER n 1 89 LEU n 1 90 LYS n 1 91 GLU n 1 92 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 92 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'tonB, HP_1341' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori (strain ATCC 700392 / 26695)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 85962 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TONB_HELPY _struct_ref.pdbx_db_accession O25899 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLVSFTINADGSVTDIKVVKSNTTDILNHAALEAIKSAAHLFPKPEETVH LKIPIAYSLKED ; _struct_ref.pdbx_align_begin 194 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LW8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 92 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O25899 _struct_ref_seq.db_align_beg 194 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 285 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 194 _struct_ref_seq.pdbx_auth_seq_align_end 285 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D HNCA' 1 isotropic 2 1 1 '2D 1H-15N HSQC' 1 isotropic 3 1 1 '3D HNCO' 1 isotropic 4 1 1 '3D HNCACB' 1 isotropic 5 1 1 '3D HN(CO)CA' 1 isotropic 9 1 1 '3D 1H-15N TOCSY' 1 isotropic 8 1 1 '3D CBCA(CO)NH' 1 isotropic 7 1 1 '3D 1H-15N NOESY' 1 isotropic 6 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 11 1 1 '3D HCCH-COSY' 1 isotropic 10 1 1 '2D 1H-13C HSQC' 1 isotropic 13 1 1 '3D H(CCO)NH' 1 isotropic 12 1 1 '3D HNCA' 1 isotropic 14 1 1 '3D HBHA(CO)NH' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.02 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 0 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.5 mM [U-100% 13C; U-100% 15N] TonB CTD, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 15N13C _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '20 mM sodium phosphate buffer, pH 6.0' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 850 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5LW8 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 6 # _pdbx_nmr_details.entry_id 5LW8 _pdbx_nmr_details.text '3D 1H-15N NOESY and 3D 1H-13C NOESY spectra were recorded with a mixing time of 90 ms.' # _pdbx_nmr_ensemble.entry_id 5LW8 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5LW8 _pdbx_nmr_representative.conformer_id 11 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' 2.4.1 CCPN 5 'structure calculation' CYANA 3.0 'Guntert, Mumenthaler and Wuthrich' 6 refinement Amber 14.0 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'data analysis' PSVS 1.5 'Bhattacharya and Montelione' 7 'chemical shift assignment' TALOS ? ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LW8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5LW8 _struct.title 'NMR solution structure of Helicobacter pylori TonB-CTD (residues 194-285)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LW8 _struct_keywords.text 'TonB-dependent iron uptake, C-terminal domain, proline rich domain, METAL TRANSPORT' _struct_keywords.pdbx_keywords 'METAL TRANSPORT' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 3 ? ASN A 16 ? GLU A 196 ASN A 209 1 ? 14 HELX_P HELX_P2 AA2 MET A 21 ? GLY A 26 ? MET A 214 GLY A 219 1 ? 6 HELX_P HELX_P3 AA3 THR A 54 ? ALA A 68 ? THR A 247 ALA A 261 1 ? 15 HELX_P HELX_P4 AA4 ALA A 69 ? PHE A 72 ? ALA A 262 PHE A 265 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 43 ? SER A 51 ? VAL A 236 SER A 244 AA1 2 GLY A 29 ? ILE A 37 ? GLY A 222 ILE A 230 AA1 3 LEU A 81 ? TYR A 87 ? LEU A 274 TYR A 280 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LYS A 47 ? O LYS A 240 N SER A 34 ? N SER A 227 AA1 2 3 N VAL A 33 ? N VAL A 226 O ILE A 83 ? O ILE A 276 # _atom_sites.entry_id 5LW8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 194 194 SER SER A . n A 1 2 ASN 2 195 195 ASN ASN A . n A 1 3 GLU 3 196 196 GLU GLU A . n A 1 4 PHE 4 197 197 PHE PHE A . n A 1 5 LEU 5 198 198 LEU LEU A . n A 1 6 MET 6 199 199 MET MET A . n A 1 7 LYS 7 200 200 LYS LYS A . n A 1 8 ILE 8 201 201 ILE ILE A . n A 1 9 GLN 9 202 202 GLN GLN A . n A 1 10 THR 10 203 203 THR THR A . n A 1 11 ALA 11 204 204 ALA ALA A . n A 1 12 ILE 12 205 205 ILE ILE A . n A 1 13 SER 13 206 206 SER SER A . n A 1 14 SER 14 207 207 SER SER A . n A 1 15 LYS 15 208 208 LYS LYS A . n A 1 16 ASN 16 209 209 ASN ASN A . n A 1 17 ARG 17 210 210 ARG ARG A . n A 1 18 TYR 18 211 211 TYR TYR A . n A 1 19 PRO 19 212 212 PRO PRO A . n A 1 20 LYS 20 213 213 LYS LYS A . n A 1 21 MET 21 214 214 MET MET A . n A 1 22 ALA 22 215 215 ALA ALA A . n A 1 23 GLN 23 216 216 GLN GLN A . n A 1 24 ILE 24 217 217 ILE ILE A . n A 1 25 ARG 25 218 218 ARG ARG A . n A 1 26 GLY 26 219 219 GLY GLY A . n A 1 27 ILE 27 220 220 ILE ILE A . n A 1 28 GLU 28 221 221 GLU GLU A . n A 1 29 GLY 29 222 222 GLY GLY A . n A 1 30 GLU 30 223 223 GLU GLU A . n A 1 31 VAL 31 224 224 VAL VAL A . n A 1 32 LEU 32 225 225 LEU LEU A . n A 1 33 VAL 33 226 226 VAL VAL A . n A 1 34 SER 34 227 227 SER SER A . n A 1 35 PHE 35 228 228 PHE PHE A . n A 1 36 THR 36 229 229 THR THR A . n A 1 37 ILE 37 230 230 ILE ILE A . n A 1 38 ASN 38 231 231 ASN ASN A . n A 1 39 ALA 39 232 232 ALA ALA A . n A 1 40 ASP 40 233 233 ASP ASP A . n A 1 41 GLY 41 234 234 GLY GLY A . n A 1 42 SER 42 235 235 SER SER A . n A 1 43 VAL 43 236 236 VAL VAL A . n A 1 44 THR 44 237 237 THR THR A . n A 1 45 ASP 45 238 238 ASP ASP A . n A 1 46 ILE 46 239 239 ILE ILE A . n A 1 47 LYS 47 240 240 LYS LYS A . n A 1 48 VAL 48 241 241 VAL VAL A . n A 1 49 VAL 49 242 242 VAL VAL A . n A 1 50 LYS 50 243 243 LYS LYS A . n A 1 51 SER 51 244 244 SER SER A . n A 1 52 ASN 52 245 245 ASN ASN A . n A 1 53 THR 53 246 246 THR THR A . n A 1 54 THR 54 247 247 THR THR A . n A 1 55 ASP 55 248 248 ASP ASP A . n A 1 56 ILE 56 249 249 ILE ILE A . n A 1 57 LEU 57 250 250 LEU LEU A . n A 1 58 ASN 58 251 251 ASN ASN A . n A 1 59 HIS 59 252 252 HIS HIS A . n A 1 60 ALA 60 253 253 ALA ALA A . n A 1 61 ALA 61 254 254 ALA ALA A . n A 1 62 LEU 62 255 255 LEU LEU A . n A 1 63 GLU 63 256 256 GLU GLU A . n A 1 64 ALA 64 257 257 ALA ALA A . n A 1 65 ILE 65 258 258 ILE ILE A . n A 1 66 LYS 66 259 259 LYS LYS A . n A 1 67 SER 67 260 260 SER SER A . n A 1 68 ALA 68 261 261 ALA ALA A . n A 1 69 ALA 69 262 262 ALA ALA A . n A 1 70 HIS 70 263 263 HIS HIS A . n A 1 71 LEU 71 264 264 LEU LEU A . n A 1 72 PHE 72 265 265 PHE PHE A . n A 1 73 PRO 73 266 266 PRO PRO A . n A 1 74 LYS 74 267 267 LYS LYS A . n A 1 75 PRO 75 268 268 PRO PRO A . n A 1 76 GLU 76 269 269 GLU GLU A . n A 1 77 GLU 77 270 270 GLU GLU A . n A 1 78 THR 78 271 271 THR THR A . n A 1 79 VAL 79 272 272 VAL VAL A . n A 1 80 HIS 80 273 273 HIS HIS A . n A 1 81 LEU 81 274 274 LEU LEU A . n A 1 82 LYS 82 275 275 LYS LYS A . n A 1 83 ILE 83 276 276 ILE ILE A . n A 1 84 PRO 84 277 277 PRO PRO A . n A 1 85 ILE 85 278 278 ILE ILE A . n A 1 86 ALA 86 279 279 ALA ALA A . n A 1 87 TYR 87 280 280 TYR TYR A . n A 1 88 SER 88 281 281 SER SER A . n A 1 89 LEU 89 282 282 LEU LEU A . n A 1 90 LYS 90 283 283 LYS LYS A . n A 1 91 GLU 91 284 284 GLU GLU A . n A 1 92 ASP 92 285 285 ASP ASP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-10-19 2 'Structure model' 1 1 2016-11-02 3 'Structure model' 1 2 2016-11-30 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_nmr_software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_database_status 4 5 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_nmr_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 5 5 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'TonB CTD' _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 13C; U-100% 15N]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 10 OD2 A ASP 233 ? ? HG A SER 235 ? ? 1.57 2 19 OD2 A ASP 233 ? ? HG A SER 235 ? ? 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 123.72 120.30 3.42 0.50 N 2 1 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 124.09 120.30 3.79 0.50 N 3 3 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 124.11 120.30 3.81 0.50 N 4 4 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 123.91 120.30 3.61 0.50 N 5 4 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.46 120.30 3.16 0.50 N 6 5 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 124.12 120.30 3.82 0.50 N 7 5 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 124.38 120.30 4.08 0.50 N 8 6 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.40 120.30 3.10 0.50 N 9 7 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 123.72 120.30 3.42 0.50 N 10 7 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 124.17 120.30 3.87 0.50 N 11 8 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 124.43 120.30 4.13 0.50 N 12 8 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.99 120.30 3.69 0.50 N 13 9 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 123.31 120.30 3.01 0.50 N 14 9 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.98 120.30 3.68 0.50 N 15 10 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 123.46 120.30 3.16 0.50 N 16 10 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.52 120.30 3.22 0.50 N 17 11 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.85 120.30 3.55 0.50 N 18 13 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 123.97 120.30 3.67 0.50 N 19 14 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 124.48 120.30 4.18 0.50 N 20 15 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 124.07 120.30 3.77 0.50 N 21 16 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 124.10 120.30 3.80 0.50 N 22 17 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 123.64 120.30 3.34 0.50 N 23 17 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.60 120.30 3.30 0.50 N 24 18 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 124.41 120.30 4.11 0.50 N 25 19 NE A ARG 210 ? ? CZ A ARG 210 ? ? NH1 A ARG 210 ? ? 124.03 120.30 3.73 0.50 N 26 19 NE A ARG 218 ? ? CZ A ARG 218 ? ? NH1 A ARG 218 ? ? 123.43 120.30 3.13 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 196 ? ? -129.37 -82.62 2 1 THR A 271 ? ? -62.63 83.22 3 1 VAL A 272 ? ? -82.69 -125.25 4 2 GLU A 196 ? ? -131.57 -107.00 5 2 VAL A 242 ? ? -90.46 -61.84 6 2 VAL A 272 ? ? -126.59 -143.31 7 5 GLU A 196 ? ? -146.94 -51.05 8 5 LYS A 213 ? ? -59.51 -9.35 9 6 VAL A 272 ? ? -65.36 -168.76 10 7 THR A 271 ? ? -68.70 79.57 11 7 VAL A 272 ? ? -79.49 -148.23 12 8 ASN A 195 ? ? -154.93 2.50 13 9 THR A 271 ? ? -58.85 96.87 14 9 LYS A 283 ? ? -84.36 47.89 15 10 ASN A 195 ? ? -143.81 -18.54 16 11 ASN A 195 ? ? -144.71 -12.73 17 11 LYS A 213 ? ? -61.97 5.03 18 11 MET A 214 ? ? -137.78 -36.75 19 11 GLU A 284 ? ? -140.37 -22.89 20 13 ASP A 238 ? ? 70.14 46.84 21 14 ARG A 210 ? ? -95.19 47.36 22 15 GLU A 196 ? ? -154.90 -46.46 23 16 GLU A 196 ? ? -157.07 -32.74 24 16 LYS A 213 ? ? -77.52 34.94 25 16 MET A 214 ? ? -152.28 -30.63 26 17 LEU A 282 ? ? 62.55 -23.12 27 18 ARG A 210 ? ? -144.33 56.09 28 18 THR A 271 ? ? -66.94 79.27 29 19 ASP A 238 ? ? 71.02 36.37 30 20 MET A 214 ? ? -62.60 24.88 31 20 THR A 271 ? ? -63.68 69.43 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 10 _pdbx_validate_peptide_omega.auth_comp_id_1 THR _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 229 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ILE _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 230 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.93 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 211 ? ? 0.066 'SIDE CHAIN' 2 4 ARG A 218 ? ? 0.084 'SIDE CHAIN' 3 11 ARG A 218 ? ? 0.079 'SIDE CHAIN' 4 20 TYR A 211 ? ? 0.063 'SIDE CHAIN' #