data_5M1W # _entry.id 5M1W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5M1W WWPDB D_1200001383 BMRB 34053 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Structure of a stable G-hairpin' _pdbx_database_related.db_id 34053 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5M1W _pdbx_database_status.recvd_initial_deposition_date 2016-10-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gajarsky, M.' 1 'Zivkovic, M.L.' 2 'Stadlbauer, P.' 3 'Pagano, B.' 4 'Fiala, R.' 5 'Amato, J.' 6 'Tomaska, L.' 7 'Sponer, J.' 8 'Plavec, J.' 9 'Trantirek, L.' 10 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 139 _citation.language ? _citation.page_first 3591 _citation.page_last 3594 _citation.title 'Structure of a Stable G-Hairpin.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.6b10786 _citation.pdbx_database_id_PubMed 28217994 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gajarsky, M.' 1 ? primary 'Zivkovic, M.L.' 2 ? primary 'Stadlbauer, P.' 3 ? primary 'Pagano, B.' 4 ? primary 'Fiala, R.' 5 ? primary 'Amato, J.' 6 ? primary 'Tomaska, L.' 7 ? primary 'Sponer, J.' 8 ? primary 'Plavec, J.' 9 ? primary 'Trantirek, L.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3') ; _entity.formula_weight 3476.254 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DT)(DG)(DG)(DG)(DT)(DG)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GTGTGGGTGTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DG n 1 10 DT n 1 11 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Saccharomyces cerevisiae' _pdbx_entity_src_syn.organism_common_name ;baker's yeast ; _pdbx_entity_src_syn.ncbi_taxonomy_id 4932 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5M1W _struct_ref.pdbx_db_accession 5M1W _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5M1W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5M1W _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 2 2 '2D 1H-1H NOESY' 2 isotropic 3 2 2 '2D 1H-1H TOCSY' 2 isotropic 4 2 2 '2D DQF-COSY' 1 isotropic 5 1 1 '2D 1H-1H ROESY' 5 isotropic 6 2 2 '2D 1H-1H ROESY' 5 isotropic 7 3 3 '1D 15N-edited HSQC' 4 isotropic 8 3 3 '1D 13C-edited HSQC' 4 isotropic 9 2 2 'diffusion experiment' 3 isotropic 10 2 2 '2D 1H-1H NOESY' 5 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 atm 1 7.0 100 ? ? mM SC11_H2O ? pH ? ? K 2 283 atm 1 7.4 100 ? ? mM SC11_D2O ? pD ? ? K 3 283 atm 1 7.0 100 ? ? mM SC11_labelled ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.2 mM / SC11, 10 mM / potassium phosphate, 100 mM / potassium chloride, 90% H2O/10% D2O' '90% H2O/10% D2O' SC11_H2O solution ? 2 '0.2 mM / SC11, 10 mM / potassium phosphate, 100 mM / potassium chloride, 100% D2O' '100% D2O' SC11_D2O solution ? 3 ;0.2 mM partial (12%) 15N, 13C residue-specific labelling SC11, 10 mM / potassium phosphate, 100 mM / potassium chloride, 90% H2O/10% D2O ; '90% H2O/10% D2O' SC11_labelled solution 'partially (~12%) residue-specific 15N, 13C-labelled oligonucleotides' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AvanceIII ? Bruker 700 'room temperature inverse (1H-BB) probe' 5 AvanceIII ? Bruker 700 'triple-resonance (1H-13C-15N) cryogenic probe' 2 AvanceIII ? Bruker 850 'triple-resonance (1H-13C-15N) cryogenic probe' 3 AvanceIII ? Bruker 950 'triple-resonance (1H-13C-15N) cryogenic probe' 4 'Uniform NMR System' ? Varian 600 'DD2 console' # _pdbx_nmr_refine.entry_id 5M1W _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 5M1W _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5M1W _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' Sparky ? Goddard 2 processing TopSpin 3.1 'Bruker Biospin' 5 processing VNMR ? Varian 3 'structure calculation' Amber 14.0 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 4 refinement Amber 14.0 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 'chemical shift assignment' VNMR ? Varian # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5M1W _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5M1W _struct.title 'Structure of a stable G-hairpin' _struct.pdbx_descriptor ;DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5M1W _struct_keywords.text 'G-hairpin G:G base pairs NMR spectroscopy conformational exchange, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 5 O6 ? ? A DG 1 A DG 5 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 5 N1 ? ? A DG 1 A DG 5 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? hydrog3 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 6 A DG 9 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? hydrog4 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 6 A DG 9 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? hydrog5 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? hydrog6 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5M1W _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DG 11 11 11 DG DG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 2140 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-01 2 'Structure model' 1 1 2017-03-29 3 'Structure model' 1 2 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_nmr_software 2 3 'Structure model' pdbx_seq_map_depositor_info # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_nmr_software.name' 2 3 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 SC11 0.2 ? mM / 1 'potassium phosphate' 10 ? mM / 1 'potassium chloride' 100 ? mM / 2 SC11 0.2 ? mM / 2 'potassium phosphate' 10 ? mM / 2 'potassium chloride' 100 ? mM / 3 SC11 0.2 ? mM 'partial (12%) 15N, 13C residue-specific labelling' 3 'potassium phosphate' 10 ? mM / 3 'potassium chloride' 100 ? mM / # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.11 108.30 2.81 0.30 N 2 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.16 122.90 -3.74 0.60 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.56 108.30 2.26 0.30 N 4 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.88 108.30 3.58 0.30 N 5 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.20 122.90 -3.70 0.60 N 6 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.43 108.30 5.13 0.30 N 7 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.33 108.30 4.03 0.30 N 8 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.95 108.30 7.65 0.30 N 9 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.43 108.30 2.13 0.30 N 10 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.04 122.90 -3.86 0.60 N 11 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.20 108.30 3.90 0.30 N 12 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.14 108.30 3.84 0.30 N 13 1 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.07 122.90 -3.83 0.60 N 14 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.66 108.30 4.36 0.30 N 15 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.12 108.30 2.82 0.30 N 16 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.51 108.30 3.21 0.30 N 17 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.89 108.30 3.59 0.30 N 18 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.25 122.90 -3.65 0.60 N 19 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.12 108.30 4.82 0.30 N 20 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.85 108.30 4.55 0.30 N 21 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.55 108.30 7.25 0.30 N 22 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.48 108.30 2.18 0.30 N 23 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.00 122.90 -3.90 0.60 N 24 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.69 108.30 3.39 0.30 N 25 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.55 108.30 2.25 0.30 N 26 2 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.07 122.90 -3.83 0.60 N 27 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.67 108.30 3.37 0.30 N 28 3 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 116.25 119.90 -3.65 0.60 N 29 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.21 108.30 2.91 0.30 N 30 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.85 108.30 2.55 0.30 N 31 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.21 108.30 3.91 0.30 N 32 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.95 108.30 4.65 0.30 N 33 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.53 108.30 4.23 0.30 N 34 3 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.33 108.30 7.03 0.30 N 35 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.51 108.30 2.21 0.30 N 36 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.27 122.90 -3.63 0.60 N 37 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.98 108.30 3.68 0.30 N 38 3 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.51 108.30 2.21 0.30 N 39 3 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.97 122.90 -3.93 0.60 N 40 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.80 108.30 3.50 0.30 N 41 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.44 108.30 2.14 0.30 N 42 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.58 108.30 3.28 0.30 N 43 4 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.28 122.90 -3.62 0.60 N 44 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.33 108.30 3.03 0.30 N 45 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.07 108.30 3.77 0.30 N 46 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.24 122.90 -3.66 0.60 N 47 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.33 108.30 5.03 0.30 N 48 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.89 108.30 4.59 0.30 N 49 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.69 108.30 7.39 0.30 N 50 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.56 108.30 2.26 0.30 N 51 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.18 122.90 -3.72 0.60 N 52 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.10 108.30 3.80 0.30 N 53 4 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.90 108.30 3.60 0.30 N 54 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 113.10 108.30 4.80 0.30 N 55 5 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 116.22 119.90 -3.68 0.60 N 56 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.19 108.30 2.89 0.30 N 57 5 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.18 122.90 -3.72 0.60 N 58 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.75 108.30 2.45 0.30 N 59 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.33 108.30 4.03 0.30 N 60 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.01 122.90 -3.89 0.60 N 61 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.21 108.30 4.91 0.30 N 62 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.61 108.30 2.31 0.30 N 63 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.03 108.30 6.73 0.30 N 64 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.61 108.30 2.31 0.30 N 65 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.07 122.90 -3.83 0.60 N 66 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.77 108.30 3.47 0.30 N 67 5 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.83 108.30 3.53 0.30 N 68 5 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.22 122.90 -3.68 0.60 N 69 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.69 108.30 4.39 0.30 N 70 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.10 108.30 2.80 0.30 N 71 6 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.19 122.90 -3.71 0.60 N 72 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.28 108.30 2.98 0.30 N 73 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.94 108.30 3.64 0.30 N 74 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.16 122.90 -3.74 0.60 N 75 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.00 108.30 4.70 0.30 N 76 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.63 108.30 4.33 0.30 N 77 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.29 108.30 6.99 0.30 N 78 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.98 122.90 -3.92 0.60 N 79 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.01 108.30 3.71 0.30 N 80 6 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.31 108.30 2.01 0.30 N 81 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.47 108.30 4.17 0.30 N 82 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.42 108.30 3.12 0.30 N 83 7 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.25 122.90 -3.65 0.60 N 84 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.72 108.30 2.42 0.30 N 85 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.37 108.30 4.07 0.30 N 86 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.63 108.30 5.33 0.30 N 87 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.59 108.30 4.29 0.30 N 88 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.61 108.30 7.31 0.30 N 89 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.61 108.30 2.31 0.30 N 90 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.18 122.90 -3.72 0.60 N 91 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.63 108.30 3.33 0.30 N 92 7 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.92 108.30 3.62 0.30 N 93 7 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.14 122.90 -3.76 0.60 N 94 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.80 108.30 3.50 0.30 N 95 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.26 108.30 1.96 0.30 N 96 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.29 108.30 2.99 0.30 N 97 8 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.15 122.90 -3.75 0.60 N 98 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.38 108.30 3.08 0.30 N 99 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.17 108.30 3.87 0.30 N 100 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.01 122.90 -3.89 0.60 N 101 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.92 108.30 3.62 0.30 N 102 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.63 108.30 4.33 0.30 N 103 8 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.88 108.30 7.58 0.30 N 104 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.58 108.30 2.28 0.30 N 105 8 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.26 122.90 -3.64 0.60 N 106 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.73 108.30 3.43 0.30 N 107 8 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.29 108.30 1.99 0.30 N 108 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.11 108.30 3.81 0.30 N 109 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.76 108.30 2.46 0.30 N 110 9 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 116.15 119.90 -3.75 0.60 N 111 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.93 108.30 3.63 0.30 N 112 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.42 108.30 3.12 0.30 N 113 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.84 108.30 3.54 0.30 N 114 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.19 122.90 -3.71 0.60 N 115 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.86 108.30 5.56 0.30 N 116 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.20 108.30 3.90 0.30 N 117 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 116.05 108.30 7.75 0.30 N 118 9 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.43 108.30 2.13 0.30 N 119 9 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.23 122.90 -3.67 0.60 N 120 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.38 108.30 4.08 0.30 N 121 9 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 112.65 108.30 4.35 0.30 N 122 9 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.29 122.90 -3.61 0.60 N 123 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.69 108.30 4.39 0.30 N 124 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.66 108.30 2.36 0.30 N 125 10 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 115.73 119.90 -4.17 0.60 N 126 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.61 108.30 3.31 0.30 N 127 10 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.17 122.90 -3.73 0.60 N 128 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.90 108.30 2.60 0.30 N 129 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.79 108.30 3.49 0.30 N 130 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.53 108.30 5.23 0.30 N 131 10 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.60 108.30 4.30 0.30 N 132 10 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 115.81 108.30 7.51 0.30 N 133 10 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.51 108.30 2.21 0.30 N 134 10 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.07 122.90 -3.83 0.60 N 135 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.98 108.30 3.68 0.30 N 136 10 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.87 108.30 3.57 0.30 N 137 10 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.09 122.90 -3.81 0.60 N 138 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.27 108.30 3.97 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 8 ? ? 0.070 'SIDE CHAIN' 2 1 DG A 9 ? ? 0.121 'SIDE CHAIN' 3 2 DT A 8 ? ? 0.074 'SIDE CHAIN' 4 2 DG A 9 ? ? 0.113 'SIDE CHAIN' 5 3 DT A 8 ? ? 0.077 'SIDE CHAIN' 6 3 DG A 9 ? ? 0.117 'SIDE CHAIN' 7 4 DT A 8 ? ? 0.064 'SIDE CHAIN' 8 4 DG A 9 ? ? 0.129 'SIDE CHAIN' 9 5 DG A 6 ? ? 0.053 'SIDE CHAIN' 10 5 DT A 8 ? ? 0.078 'SIDE CHAIN' 11 5 DG A 9 ? ? 0.120 'SIDE CHAIN' 12 6 DT A 8 ? ? 0.066 'SIDE CHAIN' 13 6 DG A 9 ? ? 0.135 'SIDE CHAIN' 14 7 DT A 8 ? ? 0.076 'SIDE CHAIN' 15 7 DG A 9 ? ? 0.119 'SIDE CHAIN' 16 8 DT A 8 ? ? 0.070 'SIDE CHAIN' 17 8 DG A 9 ? ? 0.117 'SIDE CHAIN' 18 9 DT A 8 ? ? 0.069 'SIDE CHAIN' 19 9 DG A 9 ? ? 0.135 'SIDE CHAIN' 20 10 DT A 8 ? ? 0.069 'SIDE CHAIN' 21 10 DG A 9 ? ? 0.134 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 5M1W _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 6 1_555 A DG 9 1_555 -0.225 2.050 -1.899 -27.179 39.084 -125.652 1 A_DG6:DG9_A A 6 ? A 9 ? 3 3 1 A DG 7 1_555 A DG 11 1_555 1.284 1.152 0.490 10.011 13.880 -169.767 2 A_DG7:DG11_A A 7 ? A 11 ? 3 2 1 A DG 5 1_555 A DG 1 1_555 -1.258 -0.798 0.231 -13.320 14.550 178.409 3 A_DG5:DG1_A A 5 ? A 1 ? 3 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 6 1_555 A DG 9 1_555 A DG 7 1_555 A DG 11 1_555 -4.062 0.843 -3.595 -13.096 3.947 39.913 1.541 6.874 -2.128 5.587 18.537 42.101 1 AA_DG6DG7:DG11DG9_AA A 6 ? A 9 ? A 7 ? A 11 ? 1 A DG 7 1_555 A DG 11 1_555 A DG 5 1_555 A DG 1 1_555 2.879 2.040 1.276 -45.713 170.881 -29.010 -1.173 1.399 -0.868 -86.566 -23.158 -176.989 2 AA_DG7DG5:DG1DG11_AA A 7 ? A 11 ? A 5 ? A 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Czech Science Foundation' 'Czech Republic' 13-28310S 1 'Czech Science Foundation' 'Czech Republic' 16-13721S 2 'CEITEC 2020, Ministry of Education, Youth and Sports and National Programme for Sustainability II' 'Czech Republic' LQ1601 3 'European Organization for Molecular Biology' 'Czech Republic' IG2535 4 'Marie-Curie grant' 'Czech Republic' ECOPOD 5 'Slovenian Research Agency' Slovenia P1-242 6 'Slovenian Research Agency' Slovenia J1-6733 7 'Programma STAR 2014 of University of Naples Federico II' Italy 14-CSP3-C03-141 8 #