data_5M3E # _entry.id 5M3E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5M3E pdb_00005m3e 10.2210/pdb5m3e/pdb WWPDB D_1200001852 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-21 2 'Structure model' 1 1 2016-12-28 3 'Structure model' 1 2 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5M3E _pdbx_database_status.recvd_initial_deposition_date 2016-10-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Ariza, A.' _audit_author.pdbx_ordinal 1 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Mol. Cell' _citation.journal_id_ASTM MOCEFL _citation.journal_id_CSD 2168 _citation.journal_id_ISSN 1097-4164 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first 1109 _citation.page_last 1116 _citation.title 'The Toxin-Antitoxin System DarTG Catalyzes Reversible ADP-Ribosylation of DNA.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.molcel.2016.11.014 _citation.pdbx_database_id_PubMed 27939941 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jankevicius, G.' 1 ? primary 'Ariza, A.' 2 ? primary 'Ahel, M.' 3 ? primary 'Ahel, I.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Appr-1-p processing domain protein' 18784.666 1 ? ? ? ? 2 non-polymer syn ADENOSINE-5-DIPHOSPHORIBOSE 559.316 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHGGMLRFVRGNLLEAPVEALVNTVNTVGVMGKGVALQFKRAFPDNYQAYVKACERGQVQIGRIFVYDRGPLAQ PRYIFNFPTKKHWRHPSRMEYVEEGLKDLVCRIQELRVRSIALPPLGAGNGGLPWPEVKQRIQEALEALEGVEVWVYEPV ENPKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHGGMLRFVRGNLLEAPVEALVNTVNTVGVMGKGVALQFKRAFPDNYQAYVKACERGQVQIGRIFVYDRGPLAQ PRYIFNFPTKKHWRHPSRMEYVEEGLKDLVCRIQELRVRSIALPPLGAGNGGLPWPEVKQRIQEALEALEGVEVWVYEPV ENPKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENOSINE-5-DIPHOSPHORIBOSE APR 3 'CHLORIDE ION' CL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 GLY n 1 10 GLY n 1 11 MET n 1 12 LEU n 1 13 ARG n 1 14 PHE n 1 15 VAL n 1 16 ARG n 1 17 GLY n 1 18 ASN n 1 19 LEU n 1 20 LEU n 1 21 GLU n 1 22 ALA n 1 23 PRO n 1 24 VAL n 1 25 GLU n 1 26 ALA n 1 27 LEU n 1 28 VAL n 1 29 ASN n 1 30 THR n 1 31 VAL n 1 32 ASN n 1 33 THR n 1 34 VAL n 1 35 GLY n 1 36 VAL n 1 37 MET n 1 38 GLY n 1 39 LYS n 1 40 GLY n 1 41 VAL n 1 42 ALA n 1 43 LEU n 1 44 GLN n 1 45 PHE n 1 46 LYS n 1 47 ARG n 1 48 ALA n 1 49 PHE n 1 50 PRO n 1 51 ASP n 1 52 ASN n 1 53 TYR n 1 54 GLN n 1 55 ALA n 1 56 TYR n 1 57 VAL n 1 58 LYS n 1 59 ALA n 1 60 CYS n 1 61 GLU n 1 62 ARG n 1 63 GLY n 1 64 GLN n 1 65 VAL n 1 66 GLN n 1 67 ILE n 1 68 GLY n 1 69 ARG n 1 70 ILE n 1 71 PHE n 1 72 VAL n 1 73 TYR n 1 74 ASP n 1 75 ARG n 1 76 GLY n 1 77 PRO n 1 78 LEU n 1 79 ALA n 1 80 GLN n 1 81 PRO n 1 82 ARG n 1 83 TYR n 1 84 ILE n 1 85 PHE n 1 86 ASN n 1 87 PHE n 1 88 PRO n 1 89 THR n 1 90 LYS n 1 91 LYS n 1 92 HIS n 1 93 TRP n 1 94 ARG n 1 95 HIS n 1 96 PRO n 1 97 SER n 1 98 ARG n 1 99 MET n 1 100 GLU n 1 101 TYR n 1 102 VAL n 1 103 GLU n 1 104 GLU n 1 105 GLY n 1 106 LEU n 1 107 LYS n 1 108 ASP n 1 109 LEU n 1 110 VAL n 1 111 CYS n 1 112 ARG n 1 113 ILE n 1 114 GLN n 1 115 GLU n 1 116 LEU n 1 117 ARG n 1 118 VAL n 1 119 ARG n 1 120 SER n 1 121 ILE n 1 122 ALA n 1 123 LEU n 1 124 PRO n 1 125 PRO n 1 126 LEU n 1 127 GLY n 1 128 ALA n 1 129 GLY n 1 130 ASN n 1 131 GLY n 1 132 GLY n 1 133 LEU n 1 134 PRO n 1 135 TRP n 1 136 PRO n 1 137 GLU n 1 138 VAL n 1 139 LYS n 1 140 GLN n 1 141 ARG n 1 142 ILE n 1 143 GLN n 1 144 GLU n 1 145 ALA n 1 146 LEU n 1 147 GLU n 1 148 ALA n 1 149 LEU n 1 150 GLU n 1 151 GLY n 1 152 VAL n 1 153 GLU n 1 154 VAL n 1 155 TRP n 1 156 VAL n 1 157 TYR n 1 158 GLU n 1 159 PRO n 1 160 VAL n 1 161 GLU n 1 162 ASN n 1 163 PRO n 1 164 LYS n 1 165 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 165 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TaqDRAFT_4250 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'codon optimised gene' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus aquaticus Y51MC23' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 498848 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'Rosetta (DE3)' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pET28a _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 APR non-polymer . ADENOSINE-5-DIPHOSPHORIBOSE ? 'C15 H23 N5 O14 P2' 559.316 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -9 ? ? ? A . n A 1 2 GLY 2 -8 ? ? ? A . n A 1 3 HIS 3 -7 ? ? ? A . n A 1 4 HIS 4 -6 ? ? ? A . n A 1 5 HIS 5 -5 ? ? ? A . n A 1 6 HIS 6 -4 ? ? ? A . n A 1 7 HIS 7 -3 ? ? ? A . n A 1 8 HIS 8 -2 ? ? ? A . n A 1 9 GLY 9 -1 -1 GLY GLY A . n A 1 10 GLY 10 0 0 GLY GLY A . n A 1 11 MET 11 1 1 MET MET A . n A 1 12 LEU 12 2 2 LEU LEU A . n A 1 13 ARG 13 3 3 ARG ARG A . n A 1 14 PHE 14 4 4 PHE PHE A . n A 1 15 VAL 15 5 5 VAL VAL A . n A 1 16 ARG 16 6 6 ARG ARG A . n A 1 17 GLY 17 7 7 GLY GLY A . n A 1 18 ASN 18 8 8 ASN ASN A . n A 1 19 LEU 19 9 9 LEU LEU A . n A 1 20 LEU 20 10 10 LEU LEU A . n A 1 21 GLU 21 11 11 GLU GLU A . n A 1 22 ALA 22 12 12 ALA ALA A . n A 1 23 PRO 23 13 13 PRO PRO A . n A 1 24 VAL 24 14 14 VAL VAL A . n A 1 25 GLU 25 15 15 GLU GLU A . n A 1 26 ALA 26 16 16 ALA ALA A . n A 1 27 LEU 27 17 17 LEU LEU A . n A 1 28 VAL 28 18 18 VAL VAL A . n A 1 29 ASN 29 19 19 ASN ASN A . n A 1 30 THR 30 20 20 THR THR A . n A 1 31 VAL 31 21 21 VAL VAL A . n A 1 32 ASN 32 22 22 ASN ASN A . n A 1 33 THR 33 23 23 THR THR A . n A 1 34 VAL 34 24 24 VAL VAL A . n A 1 35 GLY 35 25 25 GLY GLY A . n A 1 36 VAL 36 26 26 VAL VAL A . n A 1 37 MET 37 27 27 MET MET A . n A 1 38 GLY 38 28 28 GLY GLY A . n A 1 39 LYS 39 29 29 LYS LYS A . n A 1 40 GLY 40 30 30 GLY GLY A . n A 1 41 VAL 41 31 31 VAL VAL A . n A 1 42 ALA 42 32 32 ALA ALA A . n A 1 43 LEU 43 33 33 LEU LEU A . n A 1 44 GLN 44 34 34 GLN GLN A . n A 1 45 PHE 45 35 35 PHE PHE A . n A 1 46 LYS 46 36 36 LYS LYS A . n A 1 47 ARG 47 37 37 ARG ARG A . n A 1 48 ALA 48 38 38 ALA ALA A . n A 1 49 PHE 49 39 39 PHE PHE A . n A 1 50 PRO 50 40 40 PRO PRO A . n A 1 51 ASP 51 41 41 ASP ASP A . n A 1 52 ASN 52 42 42 ASN ASN A . n A 1 53 TYR 53 43 43 TYR TYR A . n A 1 54 GLN 54 44 44 GLN GLN A . n A 1 55 ALA 55 45 45 ALA ALA A . n A 1 56 TYR 56 46 46 TYR TYR A . n A 1 57 VAL 57 47 47 VAL VAL A . n A 1 58 LYS 58 48 48 LYS LYS A . n A 1 59 ALA 59 49 49 ALA ALA A . n A 1 60 CYS 60 50 50 CYS CYS A . n A 1 61 GLU 61 51 51 GLU GLU A . n A 1 62 ARG 62 52 52 ARG ARG A . n A 1 63 GLY 63 53 53 GLY GLY A . n A 1 64 GLN 64 54 54 GLN GLN A . n A 1 65 VAL 65 55 55 VAL VAL A . n A 1 66 GLN 66 56 56 GLN GLN A . n A 1 67 ILE 67 57 57 ILE ILE A . n A 1 68 GLY 68 58 58 GLY GLY A . n A 1 69 ARG 69 59 59 ARG ARG A . n A 1 70 ILE 70 60 60 ILE ILE A . n A 1 71 PHE 71 61 61 PHE PHE A . n A 1 72 VAL 72 62 62 VAL VAL A . n A 1 73 TYR 73 63 63 TYR TYR A . n A 1 74 ASP 74 64 64 ASP ASP A . n A 1 75 ARG 75 65 65 ARG ARG A . n A 1 76 GLY 76 66 66 GLY GLY A . n A 1 77 PRO 77 67 67 PRO PRO A . n A 1 78 LEU 78 68 68 LEU LEU A . n A 1 79 ALA 79 69 69 ALA ALA A . n A 1 80 GLN 80 70 70 GLN GLN A . n A 1 81 PRO 81 71 71 PRO PRO A . n A 1 82 ARG 82 72 72 ARG ARG A . n A 1 83 TYR 83 73 73 TYR TYR A . n A 1 84 ILE 84 74 74 ILE ILE A . n A 1 85 PHE 85 75 75 PHE PHE A . n A 1 86 ASN 86 76 76 ASN ASN A . n A 1 87 PHE 87 77 77 PHE PHE A . n A 1 88 PRO 88 78 78 PRO PRO A . n A 1 89 THR 89 79 79 THR THR A . n A 1 90 LYS 90 80 80 LYS LYS A . n A 1 91 LYS 91 81 81 LYS LYS A . n A 1 92 HIS 92 82 82 HIS HIS A . n A 1 93 TRP 93 83 83 TRP TRP A . n A 1 94 ARG 94 84 84 ARG ARG A . n A 1 95 HIS 95 85 85 HIS HIS A . n A 1 96 PRO 96 86 86 PRO PRO A . n A 1 97 SER 97 87 87 SER SER A . n A 1 98 ARG 98 88 88 ARG ARG A . n A 1 99 MET 99 89 89 MET MET A . n A 1 100 GLU 100 90 90 GLU GLU A . n A 1 101 TYR 101 91 91 TYR TYR A . n A 1 102 VAL 102 92 92 VAL VAL A . n A 1 103 GLU 103 93 93 GLU GLU A . n A 1 104 GLU 104 94 94 GLU GLU A . n A 1 105 GLY 105 95 95 GLY GLY A . n A 1 106 LEU 106 96 96 LEU LEU A . n A 1 107 LYS 107 97 97 LYS LYS A . n A 1 108 ASP 108 98 98 ASP ASP A . n A 1 109 LEU 109 99 99 LEU LEU A . n A 1 110 VAL 110 100 100 VAL VAL A . n A 1 111 CYS 111 101 101 CYS CYS A . n A 1 112 ARG 112 102 102 ARG ARG A . n A 1 113 ILE 113 103 103 ILE ILE A . n A 1 114 GLN 114 104 104 GLN GLN A . n A 1 115 GLU 115 105 105 GLU GLU A . n A 1 116 LEU 116 106 106 LEU LEU A . n A 1 117 ARG 117 107 107 ARG ARG A . n A 1 118 VAL 118 108 108 VAL VAL A . n A 1 119 ARG 119 109 109 ARG ARG A . n A 1 120 SER 120 110 110 SER SER A . n A 1 121 ILE 121 111 111 ILE ILE A . n A 1 122 ALA 122 112 112 ALA ALA A . n A 1 123 LEU 123 113 113 LEU LEU A . n A 1 124 PRO 124 114 114 PRO PRO A . n A 1 125 PRO 125 115 115 PRO PRO A . n A 1 126 LEU 126 116 116 LEU LEU A . n A 1 127 GLY 127 117 117 GLY GLY A . n A 1 128 ALA 128 118 118 ALA ALA A . n A 1 129 GLY 129 119 119 GLY GLY A . n A 1 130 ASN 130 120 120 ASN ASN A . n A 1 131 GLY 131 121 121 GLY GLY A . n A 1 132 GLY 132 122 122 GLY GLY A . n A 1 133 LEU 133 123 123 LEU LEU A . n A 1 134 PRO 134 124 124 PRO PRO A . n A 1 135 TRP 135 125 125 TRP TRP A . n A 1 136 PRO 136 126 126 PRO PRO A . n A 1 137 GLU 137 127 127 GLU GLU A . n A 1 138 VAL 138 128 128 VAL VAL A . n A 1 139 LYS 139 129 129 LYS LYS A . n A 1 140 GLN 140 130 130 GLN GLN A . n A 1 141 ARG 141 131 131 ARG ARG A . n A 1 142 ILE 142 132 132 ILE ILE A . n A 1 143 GLN 143 133 133 GLN GLN A . n A 1 144 GLU 144 134 134 GLU GLU A . n A 1 145 ALA 145 135 135 ALA ALA A . n A 1 146 LEU 146 136 136 LEU LEU A . n A 1 147 GLU 147 137 137 GLU GLU A . n A 1 148 ALA 148 138 138 ALA ALA A . n A 1 149 LEU 149 139 139 LEU LEU A . n A 1 150 GLU 150 140 140 GLU GLU A . n A 1 151 GLY 151 141 141 GLY GLY A . n A 1 152 VAL 152 142 142 VAL VAL A . n A 1 153 GLU 153 143 143 GLU GLU A . n A 1 154 VAL 154 144 144 VAL VAL A . n A 1 155 TRP 155 145 145 TRP TRP A . n A 1 156 VAL 156 146 146 VAL VAL A . n A 1 157 TYR 157 147 147 TYR TYR A . n A 1 158 GLU 158 148 148 GLU GLU A . n A 1 159 PRO 159 149 149 PRO PRO A . n A 1 160 VAL 160 150 150 VAL VAL A . n A 1 161 GLU 161 151 ? ? ? A . n A 1 162 ASN 162 152 ? ? ? A . n A 1 163 PRO 163 153 ? ? ? A . n A 1 164 LYS 164 154 ? ? ? A . n A 1 165 ALA 165 155 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR 1 201 1 APR APR A . C 3 CL 1 202 1 CL CL A . D 4 HOH 1 301 5 HOH HOH A . D 4 HOH 2 302 15 HOH HOH A . D 4 HOH 3 303 16 HOH HOH A . D 4 HOH 4 304 1 HOH HOH A . D 4 HOH 5 305 11 HOH HOH A . D 4 HOH 6 306 3 HOH HOH A . D 4 HOH 7 307 4 HOH HOH A . D 4 HOH 8 308 2 HOH HOH A . D 4 HOH 9 309 14 HOH HOH A . D 4 HOH 10 310 7 HOH HOH A . D 4 HOH 11 311 6 HOH HOH A . D 4 HOH 12 312 8 HOH HOH A . D 4 HOH 13 313 17 HOH HOH A . D 4 HOH 14 314 13 HOH HOH A . D 4 HOH 15 315 10 HOH HOH A . D 4 HOH 16 316 12 HOH HOH A . D 4 HOH 17 317 9 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0103 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5M3E _cell.details ? _cell.formula_units_Z ? _cell.length_a 37.410 _cell.length_a_esd ? _cell.length_b 60.392 _cell.length_b_esd ? _cell.length_c 76.706 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5M3E _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '200 mM sodium bromide and 20% (w/v) PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97625 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97625 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5M3E _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 60.39 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6306 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.60 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 7.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 85.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.153 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.992 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -4.64 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -3.58 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 8.22 _refine.B_iso_max ? _refine.B_iso_mean 51.825 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.910 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5M3E _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 47.45 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5955 _refine.ls_number_reflns_R_free 313 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.03 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19695 _refine.ls_R_factor_R_free 0.24375 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.19460 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2DX6 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.620 _refine.pdbx_overall_ESU_R_Free 0.290 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 18.395 _refine.overall_SU_ML 0.222 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1214 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1268 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 47.45 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.012 0.019 1299 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1253 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.603 1.999 1769 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.990 3.000 2873 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.880 5.000 155 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 37.943 22.742 62 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 15.917 15.000 214 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 14.891 15.000 14 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.078 0.200 188 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.021 1445 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 312 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.512 3.598 611 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.509 3.594 610 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.578 5.385 763 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.577 5.390 764 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.524 3.791 688 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.523 3.792 689 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.630 5.604 1005 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.703 28.031 1363 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.704 28.026 1362 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_R_work 360 _refine_ls_shell.percent_reflns_obs 83.77 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.251 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.188 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5M3E _struct.title 'Macrodomain of Thermus aquaticus DarG in complex with ADP-ribose' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5M3E _struct_keywords.text 'macrodomain, ADP-ribosylation, ADP-ribose, antitoxin, toxin-antitoxin' _struct_keywords.pdbx_keywords ANTITOXIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B7A854_THEAQ _struct_ref.pdbx_db_accession B7A854 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLRFVRGNLLEAPVEALVNTVNTVGVMGKGVALQFKRAFPDNYQAYVKACERGQVQIGRIFVYDRGPLAQPRYIFNFPTK KHWRHPSRMEYVEEGLKDLVCRIQELRVRSIALPPLGAGNGGLPWPEVKQRIQEALEALEGVEVWVYEPVENPKA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5M3E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 165 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B7A854 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 155 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 155 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5M3E MET A 1 ? UNP B7A854 ? ? 'initiating methionine' -9 1 1 5M3E GLY A 2 ? UNP B7A854 ? ? 'expression tag' -8 2 1 5M3E HIS A 3 ? UNP B7A854 ? ? 'expression tag' -7 3 1 5M3E HIS A 4 ? UNP B7A854 ? ? 'expression tag' -6 4 1 5M3E HIS A 5 ? UNP B7A854 ? ? 'expression tag' -5 5 1 5M3E HIS A 6 ? UNP B7A854 ? ? 'expression tag' -4 6 1 5M3E HIS A 7 ? UNP B7A854 ? ? 'expression tag' -3 7 1 5M3E HIS A 8 ? UNP B7A854 ? ? 'expression tag' -2 8 1 5M3E GLY A 9 ? UNP B7A854 ? ? 'expression tag' -1 9 1 5M3E GLY A 10 ? UNP B7A854 ? ? 'expression tag' 0 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1120 ? 1 MORE -21 ? 1 'SSA (A^2)' 7660 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 18 ? ALA A 22 ? ASN A 8 ALA A 12 5 ? 5 HELX_P HELX_P2 AA2 LYS A 39 ? PHE A 49 ? LYS A 29 PHE A 39 1 ? 11 HELX_P HELX_P3 AA3 PHE A 49 ? GLY A 63 ? PHE A 39 GLY A 53 1 ? 15 HELX_P HELX_P4 AA4 ARG A 98 ? LEU A 116 ? ARG A 88 LEU A 106 1 ? 19 HELX_P HELX_P5 AA5 PRO A 134 ? GLU A 147 ? PRO A 124 GLU A 137 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 80 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 70 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 81 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 71 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.43 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 11 ? VAL A 15 ? MET A 1 VAL A 5 AA1 2 GLU A 153 ? TYR A 157 ? GLU A 143 TYR A 147 AA1 3 SER A 120 ? LEU A 123 ? SER A 110 LEU A 113 AA1 4 ALA A 26 ? VAL A 31 ? ALA A 16 VAL A 21 AA1 5 TYR A 83 ? PRO A 88 ? TYR A 73 PRO A 78 AA1 6 PHE A 71 ? ASP A 74 ? PHE A 61 ASP A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 13 ? N ARG A 3 O VAL A 156 ? O VAL A 146 AA1 2 3 O TRP A 155 ? O TRP A 145 N LEU A 123 ? N LEU A 113 AA1 3 4 O ALA A 122 ? O ALA A 112 N VAL A 28 ? N VAL A 18 AA1 4 5 N ASN A 29 ? N ASN A 19 O PHE A 87 ? O PHE A 77 AA1 5 6 O ASN A 86 ? O ASN A 76 N PHE A 71 ? N PHE A 61 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A APR 201 ? 21 'binding site for residue APR A 201' AC2 Software A CL 202 ? 2 'binding site for residue CL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 GLY A 17 ? GLY A 7 . ? 1_555 ? 2 AC1 21 ASN A 18 ? ASN A 8 . ? 1_555 ? 3 AC1 21 LEU A 19 ? LEU A 9 . ? 1_555 ? 4 AC1 21 THR A 30 ? THR A 20 . ? 1_555 ? 5 AC1 21 ASN A 32 ? ASN A 22 . ? 1_555 ? 6 AC1 21 LYS A 39 ? LYS A 29 . ? 1_555 ? 7 AC1 21 GLY A 40 ? GLY A 30 . ? 1_555 ? 8 AC1 21 VAL A 41 ? VAL A 31 . ? 1_555 ? 9 AC1 21 ALA A 42 ? ALA A 32 . ? 1_555 ? 10 AC1 21 GLN A 44 ? GLN A 34 . ? 1_555 ? 11 AC1 21 THR A 89 ? THR A 79 . ? 1_555 ? 12 AC1 21 PRO A 125 ? PRO A 115 . ? 1_555 ? 13 AC1 21 GLY A 127 ? GLY A 117 . ? 1_555 ? 14 AC1 21 ALA A 128 ? ALA A 118 . ? 1_555 ? 15 AC1 21 GLY A 129 ? GLY A 119 . ? 1_555 ? 16 AC1 21 ASN A 130 ? ASN A 120 . ? 1_555 ? 17 AC1 21 GLY A 131 ? GLY A 121 . ? 1_555 ? 18 AC1 21 PRO A 159 ? PRO A 149 . ? 1_555 ? 19 AC1 21 CL C . ? CL A 202 . ? 1_555 ? 20 AC1 21 HOH D . ? HOH A 302 . ? 1_555 ? 21 AC1 21 HOH D . ? HOH A 307 . ? 1_555 ? 22 AC2 2 ASN A 32 ? ASN A 22 . ? 1_555 ? 23 AC2 2 APR B . ? APR A 201 . ? 1_555 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 81 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -86.04 _pdbx_validate_torsion.psi -95.20 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -10.4350 _pdbx_refine_tls.origin_y -7.7740 _pdbx_refine_tls.origin_z 13.1370 _pdbx_refine_tls.T[1][1] 0.1010 _pdbx_refine_tls.T[2][2] 0.0227 _pdbx_refine_tls.T[3][3] 0.0841 _pdbx_refine_tls.T[1][2] 0.0024 _pdbx_refine_tls.T[1][3] 0.0226 _pdbx_refine_tls.T[2][3] 0.0176 _pdbx_refine_tls.L[1][1] 2.1977 _pdbx_refine_tls.L[2][2] 6.0956 _pdbx_refine_tls.L[3][3] 0.7636 _pdbx_refine_tls.L[1][2] -0.5975 _pdbx_refine_tls.L[1][3] -0.7115 _pdbx_refine_tls.L[2][3] 0.3883 _pdbx_refine_tls.S[1][1] 0.1137 _pdbx_refine_tls.S[1][2] 0.0609 _pdbx_refine_tls.S[1][3] -0.1540 _pdbx_refine_tls.S[2][1] -0.2823 _pdbx_refine_tls.S[2][2] -0.0270 _pdbx_refine_tls.S[2][3] -0.4687 _pdbx_refine_tls.S[3][1] -0.0948 _pdbx_refine_tls.S[3][2] -0.1188 _pdbx_refine_tls.S[3][3] -0.0867 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 150 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -9 ? A MET 1 2 1 Y 1 A GLY -8 ? A GLY 2 3 1 Y 1 A HIS -7 ? A HIS 3 4 1 Y 1 A HIS -6 ? A HIS 4 5 1 Y 1 A HIS -5 ? A HIS 5 6 1 Y 1 A HIS -4 ? A HIS 6 7 1 Y 1 A HIS -3 ? A HIS 7 8 1 Y 1 A HIS -2 ? A HIS 8 9 1 Y 1 A GLU 151 ? A GLU 161 10 1 Y 1 A ASN 152 ? A ASN 162 11 1 Y 1 A PRO 153 ? A PRO 163 12 1 Y 1 A LYS 154 ? A LYS 164 13 1 Y 1 A ALA 155 ? A ALA 165 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 APR N1 N Y N 14 APR C2 C Y N 15 APR N3 N Y N 16 APR C4 C Y N 17 APR C5 C Y N 18 APR C6 C Y N 19 APR N6 N N N 20 APR N7 N Y N 21 APR C8 C Y N 22 APR N9 N Y N 23 APR "C1'" C N R 24 APR "C2'" C N R 25 APR "O2'" O N N 26 APR "C3'" C N S 27 APR "O3'" O N N 28 APR "O4'" O N N 29 APR "C4'" C N R 30 APR "C5'" C N N 31 APR "O5'" O N N 32 APR PA P N S 33 APR O1A O N N 34 APR O2A O N N 35 APR O3A O N N 36 APR PB P N R 37 APR O1B O N N 38 APR O2B O N N 39 APR O5D O N N 40 APR C5D C N N 41 APR O4D O N N 42 APR O1D O N N 43 APR C1D C N R 44 APR O2D O N N 45 APR C2D C N R 46 APR O3D O N N 47 APR C3D C N S 48 APR C4D C N R 49 APR H2 H N N 50 APR H61 H N N 51 APR H62 H N N 52 APR H8 H N N 53 APR "H'1" H N N 54 APR "H'2" H N N 55 APR "HO'2" H N N 56 APR "H'3" H N N 57 APR "HO'3" H N N 58 APR "H'4" H N N 59 APR "H5'1" H N N 60 APR "H5'2" H N N 61 APR HOA2 H N N 62 APR HOB2 H N N 63 APR H5R1 H N N 64 APR H5R2 H N N 65 APR HOR1 H N N 66 APR "HR'1" H N N 67 APR HOR2 H N N 68 APR "HR'2" H N N 69 APR HOR3 H N N 70 APR "HR'3" H N N 71 APR "HR'4" H N N 72 ARG N N N N 73 ARG CA C N S 74 ARG C C N N 75 ARG O O N N 76 ARG CB C N N 77 ARG CG C N N 78 ARG CD C N N 79 ARG NE N N N 80 ARG CZ C N N 81 ARG NH1 N N N 82 ARG NH2 N N N 83 ARG OXT O N N 84 ARG H H N N 85 ARG H2 H N N 86 ARG HA H N N 87 ARG HB2 H N N 88 ARG HB3 H N N 89 ARG HG2 H N N 90 ARG HG3 H N N 91 ARG HD2 H N N 92 ARG HD3 H N N 93 ARG HE H N N 94 ARG HH11 H N N 95 ARG HH12 H N N 96 ARG HH21 H N N 97 ARG HH22 H N N 98 ARG HXT H N N 99 ASN N N N N 100 ASN CA C N S 101 ASN C C N N 102 ASN O O N N 103 ASN CB C N N 104 ASN CG C N N 105 ASN OD1 O N N 106 ASN ND2 N N N 107 ASN OXT O N N 108 ASN H H N N 109 ASN H2 H N N 110 ASN HA H N N 111 ASN HB2 H N N 112 ASN HB3 H N N 113 ASN HD21 H N N 114 ASN HD22 H N N 115 ASN HXT H N N 116 ASP N N N N 117 ASP CA C N S 118 ASP C C N N 119 ASP O O N N 120 ASP CB C N N 121 ASP CG C N N 122 ASP OD1 O N N 123 ASP OD2 O N N 124 ASP OXT O N N 125 ASP H H N N 126 ASP H2 H N N 127 ASP HA H N N 128 ASP HB2 H N N 129 ASP HB3 H N N 130 ASP HD2 H N N 131 ASP HXT H N N 132 CL CL CL N N 133 CYS N N N N 134 CYS CA C N R 135 CYS C C N N 136 CYS O O N N 137 CYS CB C N N 138 CYS SG S N N 139 CYS OXT O N N 140 CYS H H N N 141 CYS H2 H N N 142 CYS HA H N N 143 CYS HB2 H N N 144 CYS HB3 H N N 145 CYS HG H N N 146 CYS HXT H N N 147 GLN N N N N 148 GLN CA C N S 149 GLN C C N N 150 GLN O O N N 151 GLN CB C N N 152 GLN CG C N N 153 GLN CD C N N 154 GLN OE1 O N N 155 GLN NE2 N N N 156 GLN OXT O N N 157 GLN H H N N 158 GLN H2 H N N 159 GLN HA H N N 160 GLN HB2 H N N 161 GLN HB3 H N N 162 GLN HG2 H N N 163 GLN HG3 H N N 164 GLN HE21 H N N 165 GLN HE22 H N N 166 GLN HXT H N N 167 GLU N N N N 168 GLU CA C N S 169 GLU C C N N 170 GLU O O N N 171 GLU CB C N N 172 GLU CG C N N 173 GLU CD C N N 174 GLU OE1 O N N 175 GLU OE2 O N N 176 GLU OXT O N N 177 GLU H H N N 178 GLU H2 H N N 179 GLU HA H N N 180 GLU HB2 H N N 181 GLU HB3 H N N 182 GLU HG2 H N N 183 GLU HG3 H N N 184 GLU HE2 H N N 185 GLU HXT H N N 186 GLY N N N N 187 GLY CA C N N 188 GLY C C N N 189 GLY O O N N 190 GLY OXT O N N 191 GLY H H N N 192 GLY H2 H N N 193 GLY HA2 H N N 194 GLY HA3 H N N 195 GLY HXT H N N 196 HIS N N N N 197 HIS CA C N S 198 HIS C C N N 199 HIS O O N N 200 HIS CB C N N 201 HIS CG C Y N 202 HIS ND1 N Y N 203 HIS CD2 C Y N 204 HIS CE1 C Y N 205 HIS NE2 N Y N 206 HIS OXT O N N 207 HIS H H N N 208 HIS H2 H N N 209 HIS HA H N N 210 HIS HB2 H N N 211 HIS HB3 H N N 212 HIS HD1 H N N 213 HIS HD2 H N N 214 HIS HE1 H N N 215 HIS HE2 H N N 216 HIS HXT H N N 217 HOH O O N N 218 HOH H1 H N N 219 HOH H2 H N N 220 ILE N N N N 221 ILE CA C N S 222 ILE C C N N 223 ILE O O N N 224 ILE CB C N S 225 ILE CG1 C N N 226 ILE CG2 C N N 227 ILE CD1 C N N 228 ILE OXT O N N 229 ILE H H N N 230 ILE H2 H N N 231 ILE HA H N N 232 ILE HB H N N 233 ILE HG12 H N N 234 ILE HG13 H N N 235 ILE HG21 H N N 236 ILE HG22 H N N 237 ILE HG23 H N N 238 ILE HD11 H N N 239 ILE HD12 H N N 240 ILE HD13 H N N 241 ILE HXT H N N 242 LEU N N N N 243 LEU CA C N S 244 LEU C C N N 245 LEU O O N N 246 LEU CB C N N 247 LEU CG C N N 248 LEU CD1 C N N 249 LEU CD2 C N N 250 LEU OXT O N N 251 LEU H H N N 252 LEU H2 H N N 253 LEU HA H N N 254 LEU HB2 H N N 255 LEU HB3 H N N 256 LEU HG H N N 257 LEU HD11 H N N 258 LEU HD12 H N N 259 LEU HD13 H N N 260 LEU HD21 H N N 261 LEU HD22 H N N 262 LEU HD23 H N N 263 LEU HXT H N N 264 LYS N N N N 265 LYS CA C N S 266 LYS C C N N 267 LYS O O N N 268 LYS CB C N N 269 LYS CG C N N 270 LYS CD C N N 271 LYS CE C N N 272 LYS NZ N N N 273 LYS OXT O N N 274 LYS H H N N 275 LYS H2 H N N 276 LYS HA H N N 277 LYS HB2 H N N 278 LYS HB3 H N N 279 LYS HG2 H N N 280 LYS HG3 H N N 281 LYS HD2 H N N 282 LYS HD3 H N N 283 LYS HE2 H N N 284 LYS HE3 H N N 285 LYS HZ1 H N N 286 LYS HZ2 H N N 287 LYS HZ3 H N N 288 LYS HXT H N N 289 MET N N N N 290 MET CA C N S 291 MET C C N N 292 MET O O N N 293 MET CB C N N 294 MET CG C N N 295 MET SD S N N 296 MET CE C N N 297 MET OXT O N N 298 MET H H N N 299 MET H2 H N N 300 MET HA H N N 301 MET HB2 H N N 302 MET HB3 H N N 303 MET HG2 H N N 304 MET HG3 H N N 305 MET HE1 H N N 306 MET HE2 H N N 307 MET HE3 H N N 308 MET HXT H N N 309 PHE N N N N 310 PHE CA C N S 311 PHE C C N N 312 PHE O O N N 313 PHE CB C N N 314 PHE CG C Y N 315 PHE CD1 C Y N 316 PHE CD2 C Y N 317 PHE CE1 C Y N 318 PHE CE2 C Y N 319 PHE CZ C Y N 320 PHE OXT O N N 321 PHE H H N N 322 PHE H2 H N N 323 PHE HA H N N 324 PHE HB2 H N N 325 PHE HB3 H N N 326 PHE HD1 H N N 327 PHE HD2 H N N 328 PHE HE1 H N N 329 PHE HE2 H N N 330 PHE HZ H N N 331 PHE HXT H N N 332 PRO N N N N 333 PRO CA C N S 334 PRO C C N N 335 PRO O O N N 336 PRO CB C N N 337 PRO CG C N N 338 PRO CD C N N 339 PRO OXT O N N 340 PRO H H N N 341 PRO HA H N N 342 PRO HB2 H N N 343 PRO HB3 H N N 344 PRO HG2 H N N 345 PRO HG3 H N N 346 PRO HD2 H N N 347 PRO HD3 H N N 348 PRO HXT H N N 349 SER N N N N 350 SER CA C N S 351 SER C C N N 352 SER O O N N 353 SER CB C N N 354 SER OG O N N 355 SER OXT O N N 356 SER H H N N 357 SER H2 H N N 358 SER HA H N N 359 SER HB2 H N N 360 SER HB3 H N N 361 SER HG H N N 362 SER HXT H N N 363 THR N N N N 364 THR CA C N S 365 THR C C N N 366 THR O O N N 367 THR CB C N R 368 THR OG1 O N N 369 THR CG2 C N N 370 THR OXT O N N 371 THR H H N N 372 THR H2 H N N 373 THR HA H N N 374 THR HB H N N 375 THR HG1 H N N 376 THR HG21 H N N 377 THR HG22 H N N 378 THR HG23 H N N 379 THR HXT H N N 380 TRP N N N N 381 TRP CA C N S 382 TRP C C N N 383 TRP O O N N 384 TRP CB C N N 385 TRP CG C Y N 386 TRP CD1 C Y N 387 TRP CD2 C Y N 388 TRP NE1 N Y N 389 TRP CE2 C Y N 390 TRP CE3 C Y N 391 TRP CZ2 C Y N 392 TRP CZ3 C Y N 393 TRP CH2 C Y N 394 TRP OXT O N N 395 TRP H H N N 396 TRP H2 H N N 397 TRP HA H N N 398 TRP HB2 H N N 399 TRP HB3 H N N 400 TRP HD1 H N N 401 TRP HE1 H N N 402 TRP HE3 H N N 403 TRP HZ2 H N N 404 TRP HZ3 H N N 405 TRP HH2 H N N 406 TRP HXT H N N 407 TYR N N N N 408 TYR CA C N S 409 TYR C C N N 410 TYR O O N N 411 TYR CB C N N 412 TYR CG C Y N 413 TYR CD1 C Y N 414 TYR CD2 C Y N 415 TYR CE1 C Y N 416 TYR CE2 C Y N 417 TYR CZ C Y N 418 TYR OH O N N 419 TYR OXT O N N 420 TYR H H N N 421 TYR H2 H N N 422 TYR HA H N N 423 TYR HB2 H N N 424 TYR HB3 H N N 425 TYR HD1 H N N 426 TYR HD2 H N N 427 TYR HE1 H N N 428 TYR HE2 H N N 429 TYR HH H N N 430 TYR HXT H N N 431 VAL N N N N 432 VAL CA C N S 433 VAL C C N N 434 VAL O O N N 435 VAL CB C N N 436 VAL CG1 C N N 437 VAL CG2 C N N 438 VAL OXT O N N 439 VAL H H N N 440 VAL H2 H N N 441 VAL HA H N N 442 VAL HB H N N 443 VAL HG11 H N N 444 VAL HG12 H N N 445 VAL HG13 H N N 446 VAL HG21 H N N 447 VAL HG22 H N N 448 VAL HG23 H N N 449 VAL HXT H N N 450 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 APR N1 C2 sing Y N 13 APR N1 C6 doub Y N 14 APR C2 N3 doub Y N 15 APR C2 H2 sing N N 16 APR N3 C4 sing Y N 17 APR C4 C5 doub Y N 18 APR C4 N9 sing Y N 19 APR C5 C6 sing Y N 20 APR C5 N7 sing Y N 21 APR C6 N6 sing N N 22 APR N6 H61 sing N N 23 APR N6 H62 sing N N 24 APR N7 C8 doub Y N 25 APR C8 N9 sing Y N 26 APR C8 H8 sing N N 27 APR N9 "C1'" sing N N 28 APR "C1'" "C2'" sing N N 29 APR "C1'" "O4'" sing N N 30 APR "C1'" "H'1" sing N N 31 APR "C2'" "O2'" sing N N 32 APR "C2'" "C3'" sing N N 33 APR "C2'" "H'2" sing N N 34 APR "O2'" "HO'2" sing N N 35 APR "C3'" "O3'" sing N N 36 APR "C3'" "C4'" sing N N 37 APR "C3'" "H'3" sing N N 38 APR "O3'" "HO'3" sing N N 39 APR "O4'" "C4'" sing N N 40 APR "C4'" "C5'" sing N N 41 APR "C4'" "H'4" sing N N 42 APR "C5'" "O5'" sing N N 43 APR "C5'" "H5'1" sing N N 44 APR "C5'" "H5'2" sing N N 45 APR "O5'" PA sing N N 46 APR PA O1A doub N N 47 APR PA O2A sing N N 48 APR PA O3A sing N N 49 APR O2A HOA2 sing N N 50 APR O3A PB sing N N 51 APR PB O1B doub N N 52 APR PB O2B sing N N 53 APR PB O5D sing N N 54 APR O2B HOB2 sing N N 55 APR O5D C5D sing N N 56 APR C5D C4D sing N N 57 APR C5D H5R1 sing N N 58 APR C5D H5R2 sing N N 59 APR O4D C1D sing N N 60 APR O4D C4D sing N N 61 APR O1D C1D sing N N 62 APR O1D HOR1 sing N N 63 APR C1D C2D sing N N 64 APR C1D "HR'1" sing N N 65 APR O2D C2D sing N N 66 APR O2D HOR2 sing N N 67 APR C2D C3D sing N N 68 APR C2D "HR'2" sing N N 69 APR O3D C3D sing N N 70 APR O3D HOR3 sing N N 71 APR C3D C4D sing N N 72 APR C3D "HR'3" sing N N 73 APR C4D "HR'4" sing N N 74 ARG N CA sing N N 75 ARG N H sing N N 76 ARG N H2 sing N N 77 ARG CA C sing N N 78 ARG CA CB sing N N 79 ARG CA HA sing N N 80 ARG C O doub N N 81 ARG C OXT sing N N 82 ARG CB CG sing N N 83 ARG CB HB2 sing N N 84 ARG CB HB3 sing N N 85 ARG CG CD sing N N 86 ARG CG HG2 sing N N 87 ARG CG HG3 sing N N 88 ARG CD NE sing N N 89 ARG CD HD2 sing N N 90 ARG CD HD3 sing N N 91 ARG NE CZ sing N N 92 ARG NE HE sing N N 93 ARG CZ NH1 sing N N 94 ARG CZ NH2 doub N N 95 ARG NH1 HH11 sing N N 96 ARG NH1 HH12 sing N N 97 ARG NH2 HH21 sing N N 98 ARG NH2 HH22 sing N N 99 ARG OXT HXT sing N N 100 ASN N CA sing N N 101 ASN N H sing N N 102 ASN N H2 sing N N 103 ASN CA C sing N N 104 ASN CA CB sing N N 105 ASN CA HA sing N N 106 ASN C O doub N N 107 ASN C OXT sing N N 108 ASN CB CG sing N N 109 ASN CB HB2 sing N N 110 ASN CB HB3 sing N N 111 ASN CG OD1 doub N N 112 ASN CG ND2 sing N N 113 ASN ND2 HD21 sing N N 114 ASN ND2 HD22 sing N N 115 ASN OXT HXT sing N N 116 ASP N CA sing N N 117 ASP N H sing N N 118 ASP N H2 sing N N 119 ASP CA C sing N N 120 ASP CA CB sing N N 121 ASP CA HA sing N N 122 ASP C O doub N N 123 ASP C OXT sing N N 124 ASP CB CG sing N N 125 ASP CB HB2 sing N N 126 ASP CB HB3 sing N N 127 ASP CG OD1 doub N N 128 ASP CG OD2 sing N N 129 ASP OD2 HD2 sing N N 130 ASP OXT HXT sing N N 131 CYS N CA sing N N 132 CYS N H sing N N 133 CYS N H2 sing N N 134 CYS CA C sing N N 135 CYS CA CB sing N N 136 CYS CA HA sing N N 137 CYS C O doub N N 138 CYS C OXT sing N N 139 CYS CB SG sing N N 140 CYS CB HB2 sing N N 141 CYS CB HB3 sing N N 142 CYS SG HG sing N N 143 CYS OXT HXT sing N N 144 GLN N CA sing N N 145 GLN N H sing N N 146 GLN N H2 sing N N 147 GLN CA C sing N N 148 GLN CA CB sing N N 149 GLN CA HA sing N N 150 GLN C O doub N N 151 GLN C OXT sing N N 152 GLN CB CG sing N N 153 GLN CB HB2 sing N N 154 GLN CB HB3 sing N N 155 GLN CG CD sing N N 156 GLN CG HG2 sing N N 157 GLN CG HG3 sing N N 158 GLN CD OE1 doub N N 159 GLN CD NE2 sing N N 160 GLN NE2 HE21 sing N N 161 GLN NE2 HE22 sing N N 162 GLN OXT HXT sing N N 163 GLU N CA sing N N 164 GLU N H sing N N 165 GLU N H2 sing N N 166 GLU CA C sing N N 167 GLU CA CB sing N N 168 GLU CA HA sing N N 169 GLU C O doub N N 170 GLU C OXT sing N N 171 GLU CB CG sing N N 172 GLU CB HB2 sing N N 173 GLU CB HB3 sing N N 174 GLU CG CD sing N N 175 GLU CG HG2 sing N N 176 GLU CG HG3 sing N N 177 GLU CD OE1 doub N N 178 GLU CD OE2 sing N N 179 GLU OE2 HE2 sing N N 180 GLU OXT HXT sing N N 181 GLY N CA sing N N 182 GLY N H sing N N 183 GLY N H2 sing N N 184 GLY CA C sing N N 185 GLY CA HA2 sing N N 186 GLY CA HA3 sing N N 187 GLY C O doub N N 188 GLY C OXT sing N N 189 GLY OXT HXT sing N N 190 HIS N CA sing N N 191 HIS N H sing N N 192 HIS N H2 sing N N 193 HIS CA C sing N N 194 HIS CA CB sing N N 195 HIS CA HA sing N N 196 HIS C O doub N N 197 HIS C OXT sing N N 198 HIS CB CG sing N N 199 HIS CB HB2 sing N N 200 HIS CB HB3 sing N N 201 HIS CG ND1 sing Y N 202 HIS CG CD2 doub Y N 203 HIS ND1 CE1 doub Y N 204 HIS ND1 HD1 sing N N 205 HIS CD2 NE2 sing Y N 206 HIS CD2 HD2 sing N N 207 HIS CE1 NE2 sing Y N 208 HIS CE1 HE1 sing N N 209 HIS NE2 HE2 sing N N 210 HIS OXT HXT sing N N 211 HOH O H1 sing N N 212 HOH O H2 sing N N 213 ILE N CA sing N N 214 ILE N H sing N N 215 ILE N H2 sing N N 216 ILE CA C sing N N 217 ILE CA CB sing N N 218 ILE CA HA sing N N 219 ILE C O doub N N 220 ILE C OXT sing N N 221 ILE CB CG1 sing N N 222 ILE CB CG2 sing N N 223 ILE CB HB sing N N 224 ILE CG1 CD1 sing N N 225 ILE CG1 HG12 sing N N 226 ILE CG1 HG13 sing N N 227 ILE CG2 HG21 sing N N 228 ILE CG2 HG22 sing N N 229 ILE CG2 HG23 sing N N 230 ILE CD1 HD11 sing N N 231 ILE CD1 HD12 sing N N 232 ILE CD1 HD13 sing N N 233 ILE OXT HXT sing N N 234 LEU N CA sing N N 235 LEU N H sing N N 236 LEU N H2 sing N N 237 LEU CA C sing N N 238 LEU CA CB sing N N 239 LEU CA HA sing N N 240 LEU C O doub N N 241 LEU C OXT sing N N 242 LEU CB CG sing N N 243 LEU CB HB2 sing N N 244 LEU CB HB3 sing N N 245 LEU CG CD1 sing N N 246 LEU CG CD2 sing N N 247 LEU CG HG sing N N 248 LEU CD1 HD11 sing N N 249 LEU CD1 HD12 sing N N 250 LEU CD1 HD13 sing N N 251 LEU CD2 HD21 sing N N 252 LEU CD2 HD22 sing N N 253 LEU CD2 HD23 sing N N 254 LEU OXT HXT sing N N 255 LYS N CA sing N N 256 LYS N H sing N N 257 LYS N H2 sing N N 258 LYS CA C sing N N 259 LYS CA CB sing N N 260 LYS CA HA sing N N 261 LYS C O doub N N 262 LYS C OXT sing N N 263 LYS CB CG sing N N 264 LYS CB HB2 sing N N 265 LYS CB HB3 sing N N 266 LYS CG CD sing N N 267 LYS CG HG2 sing N N 268 LYS CG HG3 sing N N 269 LYS CD CE sing N N 270 LYS CD HD2 sing N N 271 LYS CD HD3 sing N N 272 LYS CE NZ sing N N 273 LYS CE HE2 sing N N 274 LYS CE HE3 sing N N 275 LYS NZ HZ1 sing N N 276 LYS NZ HZ2 sing N N 277 LYS NZ HZ3 sing N N 278 LYS OXT HXT sing N N 279 MET N CA sing N N 280 MET N H sing N N 281 MET N H2 sing N N 282 MET CA C sing N N 283 MET CA CB sing N N 284 MET CA HA sing N N 285 MET C O doub N N 286 MET C OXT sing N N 287 MET CB CG sing N N 288 MET CB HB2 sing N N 289 MET CB HB3 sing N N 290 MET CG SD sing N N 291 MET CG HG2 sing N N 292 MET CG HG3 sing N N 293 MET SD CE sing N N 294 MET CE HE1 sing N N 295 MET CE HE2 sing N N 296 MET CE HE3 sing N N 297 MET OXT HXT sing N N 298 PHE N CA sing N N 299 PHE N H sing N N 300 PHE N H2 sing N N 301 PHE CA C sing N N 302 PHE CA CB sing N N 303 PHE CA HA sing N N 304 PHE C O doub N N 305 PHE C OXT sing N N 306 PHE CB CG sing N N 307 PHE CB HB2 sing N N 308 PHE CB HB3 sing N N 309 PHE CG CD1 doub Y N 310 PHE CG CD2 sing Y N 311 PHE CD1 CE1 sing Y N 312 PHE CD1 HD1 sing N N 313 PHE CD2 CE2 doub Y N 314 PHE CD2 HD2 sing N N 315 PHE CE1 CZ doub Y N 316 PHE CE1 HE1 sing N N 317 PHE CE2 CZ sing Y N 318 PHE CE2 HE2 sing N N 319 PHE CZ HZ sing N N 320 PHE OXT HXT sing N N 321 PRO N CA sing N N 322 PRO N CD sing N N 323 PRO N H sing N N 324 PRO CA C sing N N 325 PRO CA CB sing N N 326 PRO CA HA sing N N 327 PRO C O doub N N 328 PRO C OXT sing N N 329 PRO CB CG sing N N 330 PRO CB HB2 sing N N 331 PRO CB HB3 sing N N 332 PRO CG CD sing N N 333 PRO CG HG2 sing N N 334 PRO CG HG3 sing N N 335 PRO CD HD2 sing N N 336 PRO CD HD3 sing N N 337 PRO OXT HXT sing N N 338 SER N CA sing N N 339 SER N H sing N N 340 SER N H2 sing N N 341 SER CA C sing N N 342 SER CA CB sing N N 343 SER CA HA sing N N 344 SER C O doub N N 345 SER C OXT sing N N 346 SER CB OG sing N N 347 SER CB HB2 sing N N 348 SER CB HB3 sing N N 349 SER OG HG sing N N 350 SER OXT HXT sing N N 351 THR N CA sing N N 352 THR N H sing N N 353 THR N H2 sing N N 354 THR CA C sing N N 355 THR CA CB sing N N 356 THR CA HA sing N N 357 THR C O doub N N 358 THR C OXT sing N N 359 THR CB OG1 sing N N 360 THR CB CG2 sing N N 361 THR CB HB sing N N 362 THR OG1 HG1 sing N N 363 THR CG2 HG21 sing N N 364 THR CG2 HG22 sing N N 365 THR CG2 HG23 sing N N 366 THR OXT HXT sing N N 367 TRP N CA sing N N 368 TRP N H sing N N 369 TRP N H2 sing N N 370 TRP CA C sing N N 371 TRP CA CB sing N N 372 TRP CA HA sing N N 373 TRP C O doub N N 374 TRP C OXT sing N N 375 TRP CB CG sing N N 376 TRP CB HB2 sing N N 377 TRP CB HB3 sing N N 378 TRP CG CD1 doub Y N 379 TRP CG CD2 sing Y N 380 TRP CD1 NE1 sing Y N 381 TRP CD1 HD1 sing N N 382 TRP CD2 CE2 doub Y N 383 TRP CD2 CE3 sing Y N 384 TRP NE1 CE2 sing Y N 385 TRP NE1 HE1 sing N N 386 TRP CE2 CZ2 sing Y N 387 TRP CE3 CZ3 doub Y N 388 TRP CE3 HE3 sing N N 389 TRP CZ2 CH2 doub Y N 390 TRP CZ2 HZ2 sing N N 391 TRP CZ3 CH2 sing Y N 392 TRP CZ3 HZ3 sing N N 393 TRP CH2 HH2 sing N N 394 TRP OXT HXT sing N N 395 TYR N CA sing N N 396 TYR N H sing N N 397 TYR N H2 sing N N 398 TYR CA C sing N N 399 TYR CA CB sing N N 400 TYR CA HA sing N N 401 TYR C O doub N N 402 TYR C OXT sing N N 403 TYR CB CG sing N N 404 TYR CB HB2 sing N N 405 TYR CB HB3 sing N N 406 TYR CG CD1 doub Y N 407 TYR CG CD2 sing Y N 408 TYR CD1 CE1 sing Y N 409 TYR CD1 HD1 sing N N 410 TYR CD2 CE2 doub Y N 411 TYR CD2 HD2 sing N N 412 TYR CE1 CZ doub Y N 413 TYR CE1 HE1 sing N N 414 TYR CE2 CZ sing Y N 415 TYR CE2 HE2 sing N N 416 TYR CZ OH sing N N 417 TYR OH HH sing N N 418 TYR OXT HXT sing N N 419 VAL N CA sing N N 420 VAL N H sing N N 421 VAL N H2 sing N N 422 VAL CA C sing N N 423 VAL CA CB sing N N 424 VAL CA HA sing N N 425 VAL C O doub N N 426 VAL C OXT sing N N 427 VAL CB CG1 sing N N 428 VAL CB CG2 sing N N 429 VAL CB HB sing N N 430 VAL CG1 HG11 sing N N 431 VAL CG1 HG12 sing N N 432 VAL CG1 HG13 sing N N 433 VAL CG2 HG21 sing N N 434 VAL CG2 HG22 sing N N 435 VAL CG2 HG23 sing N N 436 VAL OXT HXT sing N N 437 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DX6 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5M3E _atom_sites.fract_transf_matrix[1][1] 0.026731 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016558 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013037 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S # loop_