HEADER SUGAR BINDING PROTEIN 07-NOV-16 5MAY TITLE STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA STRAIN PA14 TITLE 2 IN COMPLEX WITH 2-THIOPHENESULFONAMIDE-N-(BETA-L-FUCOPYRANOSYL TITLE 3 METHYL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PA-IIL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 2-115; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN UCBPP-PA14); SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 GENE: LECB, PA14_20610; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRS01.4 KEYWDS SUGAR BINDING PROTEIN, LECTIN, LECB, PSEUDOMONAS AERUGINOSA PA14, KEYWDS 2 GLYCOINHIBITORS EXPDTA X-RAY DIFFRACTION AUTHOR R.SOMMER,A.IMBERTY,A.TITZ,A.VARROT REVDAT 4 17-JAN-24 5MAY 1 HETSYN REVDAT 3 29-JUL-20 5MAY 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 14-MAR-18 5MAY 1 JRNL REVDAT 1 20-DEC-17 5MAY 0 JRNL AUTH R.SOMMER,S.WAGNER,K.ROX,A.VARROT,D.HAUCK,E.C.WAMHOFF, JRNL AUTH 2 J.SCHREIBER,T.RYCKMANS,T.BRUNNER,C.RADEMACHER,R.W.HARTMANN, JRNL AUTH 3 M.BRONSTRUP,A.IMBERTY,A.TITZ JRNL TITL GLYCOMIMETIC, ORALLY BIOAVAILABLE LECB INHIBITORS BLOCK JRNL TITL 2 BIOFILM FORMATION OF PSEUDOMONAS AERUGINOSA. JRNL REF J. AM. CHEM. SOC. V. 140 2537 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 29272578 JRNL DOI 10.1021/JACS.7B11133 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 43462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2221 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 645 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3517 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3272 ; 0.015 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4829 ; 1.671 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7463 ; 1.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 6.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;46.067 ;27.647 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;10.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.133 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 605 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4265 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 815 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1882 ; 0.905 ; 0.994 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1881 ; 0.904 ; 0.994 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2367 ; 1.362 ; 1.488 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2368 ; 1.362 ; 1.489 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1635 ; 1.730 ; 1.183 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1635 ; 1.729 ; 1.183 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2462 ; 2.600 ; 1.711 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4346 ; 4.936 ;10.186 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3963 ; 4.398 ; 9.143 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 114 B 1 114 12664 0.09 0.05 REMARK 3 2 A 1 114 C 1 114 12736 0.07 0.05 REMARK 3 3 A 1 114 D 1 114 12694 0.06 0.05 REMARK 3 4 B 1 114 C 1 114 12626 0.07 0.05 REMARK 3 5 B 1 114 D 1 114 12480 0.07 0.05 REMARK 3 6 C 1 114 D 1 114 12386 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97712 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45743 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5A6Q REMARK 200 REMARK 200 REMARK: TILE SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6K 0.5M LICL 0.1M CITRIC ACID REMARK 280 PH 3.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.54450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.58650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.58650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.54450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 86 CG CD OE1 OE2 REMARK 470 ARG D 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 72 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -33.61 -152.10 REMARK 500 GLU A 86 -41.10 -145.92 REMARK 500 SER A 97 -140.32 -146.95 REMARK 500 ASN B 46 38.09 -140.63 REMARK 500 GLU B 86 -40.98 -146.57 REMARK 500 SER B 97 -137.86 -146.98 REMARK 500 GLU C 86 -40.05 -141.31 REMARK 500 SER C 97 -137.49 -151.39 REMARK 500 ASN D 46 38.96 -142.10 REMARK 500 GLU D 86 -42.17 -146.80 REMARK 500 SER D 97 -139.43 -145.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 441 DISTANCE = 6.80 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 146.4 REMARK 620 3 ASP A 101 OD2 152.8 45.0 REMARK 620 4 ASN A 103 OD1 87.8 69.6 75.5 REMARK 620 5 ASP A 104 OD1 83.1 71.4 116.4 86.4 REMARK 620 6 FUL A 202 O3 134.3 61.2 71.4 130.8 77.2 REMARK 620 7 FUL A 202 O4 78.9 127.0 112.4 162.8 102.5 66.1 REMARK 620 8 GLY B 114 O 77.4 124.1 80.6 87.8 159.9 120.5 78.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 55.1 REMARK 620 3 ASP A 99 OD1 86.9 79.0 REMARK 620 4 ASP A 101 OD1 77.3 130.9 88.2 REMARK 620 5 ASP A 104 OD1 117.2 130.6 148.6 78.8 REMARK 620 6 ASP A 104 OD2 84.1 81.1 159.9 107.2 50.2 REMARK 620 7 FUL A 202 O3 146.6 145.0 76.9 73.2 72.0 119.4 REMARK 620 8 FUL A 202 O2 142.4 88.0 93.2 140.3 79.7 83.3 68.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 79.7 REMARK 620 3 ASP B 101 OD1 122.3 146.3 REMARK 620 4 ASP B 101 OD2 78.9 153.4 44.9 REMARK 620 5 ASN B 103 OD1 87.7 88.8 68.8 74.7 REMARK 620 6 ASP B 104 OD1 162.6 83.7 70.6 115.4 86.8 REMARK 620 7 FUL B 202 O3 118.5 133.7 62.0 71.4 130.9 77.1 REMARK 620 8 FUL B 202 O4 79.8 76.6 128.7 114.7 162.3 101.4 66.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 53.4 REMARK 620 3 ASP B 99 OD1 86.4 80.4 REMARK 620 4 ASP B 101 OD1 77.5 129.6 86.7 REMARK 620 5 ASP B 104 OD1 117.9 129.0 148.9 80.7 REMARK 620 6 ASP B 104 OD2 82.0 79.0 159.4 107.2 51.0 REMARK 620 7 FUL B 202 O2 140.8 88.1 94.8 141.7 78.6 83.7 REMARK 620 8 FUL B 202 O3 148.6 145.1 76.9 75.2 72.5 120.8 68.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 101 OD1 146.0 REMARK 620 3 ASP C 101 OD2 151.9 46.0 REMARK 620 4 ASN C 103 OD1 88.1 69.0 74.7 REMARK 620 5 ASP C 104 OD1 85.0 70.1 115.9 88.5 REMARK 620 6 FUL C 202 O4 78.4 129.0 111.6 160.6 103.9 REMARK 620 7 FUL C 202 O3 133.7 63.7 72.2 132.7 76.9 65.6 REMARK 620 8 GLY D 114 O 78.8 122.2 78.0 86.1 163.1 77.8 118.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 54.3 REMARK 620 3 ASP C 99 OD1 86.1 79.8 REMARK 620 4 ASP C 101 OD1 77.6 130.6 86.9 REMARK 620 5 ASP C 104 OD1 118.1 130.9 147.8 78.9 REMARK 620 6 ASP C 104 OD2 82.7 79.7 159.4 107.4 52.0 REMARK 620 7 FUL C 202 O2 140.0 86.2 93.6 142.4 81.1 84.1 REMARK 620 8 FUL C 202 O3 148.7 144.0 77.1 75.2 71.4 120.3 68.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 ASN D 21 O 81.9 REMARK 620 3 ASP D 101 OD1 119.3 146.7 REMARK 620 4 ASP D 101 OD2 75.9 153.6 45.2 REMARK 620 5 ASN D 103 OD1 85.4 90.1 68.3 74.4 REMARK 620 6 ASP D 104 OD1 166.3 85.6 69.8 114.7 89.2 REMARK 620 7 FUL D 202 O3 119.2 130.5 64.3 73.9 132.6 73.4 REMARK 620 8 FUL D 202 O4 80.4 77.8 128.0 111.6 162.5 102.3 64.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 54.8 REMARK 620 3 ASP D 99 OD1 85.4 77.8 REMARK 620 4 ASP D 101 OD1 75.8 128.9 86.4 REMARK 620 5 ASP D 104 OD1 119.1 134.2 146.5 79.0 REMARK 620 6 ASP D 104 OD2 85.2 82.6 160.2 108.0 52.3 REMARK 620 7 FUL D 202 O2 142.2 88.3 95.8 142.0 78.7 81.3 REMARK 620 8 FUL D 202 O3 147.8 144.9 79.2 75.2 68.1 117.0 68.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A6Q RELATED DB: PDB REMARK 900 5A6Q CONTAINS THE SAME PROTEIN IN APO FORM DBREF1 5MAY A 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MAY A A0A0H2ZE85 2 115 DBREF1 5MAY B 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MAY B A0A0H2ZE85 2 115 DBREF1 5MAY C 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MAY C A0A0H2ZE85 2 115 DBREF1 5MAY D 1 114 UNP A0A0H2ZE85_PSEAB DBREF2 5MAY D A0A0H2ZE85 2 115 SEQRES 1 A 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 A 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 A 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 A 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 A 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 A 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 A 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 A 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 A 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 B 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 B 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 B 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 B 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 B 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 B 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 B 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 B 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 C 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 C 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 C 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 C 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 C 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 C 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 C 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 C 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 114 ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR GLN SEQRES 2 D 114 PHE GLY VAL THR ALA PHE ALA ASN SER ALA GLY THR GLN SEQRES 3 D 114 THR VAL ASN VAL GLN VAL ASN ASN GLU THR VAL ALA THR SEQRES 4 D 114 PHE THR GLY GLN SER THR ASN ASN ALA ILE ILE GLY SER SEQRES 5 D 114 LYS VAL LEU ASN SER GLY GLY GLY GLY LYS VAL GLN ILE SEQRES 6 D 114 LEU VAL SER VAL ASN GLY ARG SER SER ASP LEU VAL SER SEQRES 7 D 114 ALA GLN VAL ILE LEU ALA ASN GLU LEU ASN PHE ALA LEU SEQRES 8 D 114 VAL GLY SER GLU ASP SER THR ASP ASN ASP TYR ASN ASP SEQRES 9 D 114 ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET CA A 200 1 HET CA A 201 1 HET FUL A 202 10 HET PK6 A 203 10 HET CA B 200 1 HET CA B 201 1 HET FUL B 202 10 HET PK6 B 203 10 HET CA C 200 1 HET CA C 201 1 HET FUL C 202 10 HET PK6 C 203 10 HET CA D 200 1 HET CA D 201 1 HET FUL D 202 10 HET PK6 D 203 10 HETNAM CA CALCIUM ION HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM PK6 N-METHYL-2-THIOPHENESULFONAMIDE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 5 CA 8(CA 2+) FORMUL 7 FUL 4(C6 H12 O5) FORMUL 8 PK6 4(C5 H7 N O2 S2) FORMUL 21 HOH *645(H2 O) SHEET 1 A 4 VAL A 5 THR A 7 0 SHEET 2 A 4 LYS A 62 VAL A 69 -1 N VAL A 63 O PHE A 6 SHEET 3 A 4 GLN A 26 VAL A 32 -1 N GLN A 31 O GLN A 64 SHEET 4 A 4 GLU A 35 GLY A 42 -1 N GLY A 42 O GLN A 26 SHEET 1 B 5 ASP A 75 LEU A 83 0 SHEET 2 B 5 LEU A 87 GLU A 95 -1 N GLU A 95 O ASP A 75 SHEET 3 B 5 ALA A 105 TRP A 111 -1 N TRP A 111 O ASN A 88 SHEET 4 B 5 GLN A 13 ALA A 20 -1 N PHE A 19 O VAL A 106 SHEET 5 B 5 ALA A 48 ASN A 56 -1 N LEU A 55 O PHE A 14 SHEET 1 C 4 VAL B 5 THR B 7 0 SHEET 2 C 4 LYS B 62 VAL B 69 -1 N VAL B 63 O PHE B 6 SHEET 3 C 4 GLN B 26 VAL B 32 -1 N GLN B 31 O GLN B 64 SHEET 4 C 4 GLU B 35 GLY B 42 -1 N GLY B 42 O GLN B 26 SHEET 1 D 5 ASP B 75 LEU B 83 0 SHEET 2 D 5 LEU B 87 GLU B 95 -1 N GLU B 95 O ASP B 75 SHEET 3 D 5 ALA B 105 TRP B 111 -1 N TRP B 111 O ASN B 88 SHEET 4 D 5 GLN B 13 ALA B 20 -1 N PHE B 19 O VAL B 106 SHEET 5 D 5 ALA B 48 ASN B 56 -1 N LEU B 55 O PHE B 14 SHEET 1 E 4 VAL C 5 THR C 7 0 SHEET 2 E 4 LYS C 62 VAL C 69 -1 N VAL C 63 O PHE C 6 SHEET 3 E 4 GLN C 26 VAL C 32 -1 N GLN C 31 O GLN C 64 SHEET 4 E 4 GLU C 35 GLY C 42 -1 N GLY C 42 O GLN C 26 SHEET 1 F 5 ASP C 75 LEU C 83 0 SHEET 2 F 5 LEU C 87 GLU C 95 -1 N GLU C 95 O ASP C 75 SHEET 3 F 5 ALA C 105 TRP C 111 -1 N TRP C 111 O ASN C 88 SHEET 4 F 5 GLN C 13 ALA C 20 -1 N PHE C 19 O VAL C 106 SHEET 5 F 5 ALA C 48 ASN C 56 -1 N LEU C 55 O PHE C 14 SHEET 1 G 4 VAL D 5 THR D 7 0 SHEET 2 G 4 LYS D 62 VAL D 69 -1 N VAL D 63 O PHE D 6 SHEET 3 G 4 GLN D 26 VAL D 32 -1 N GLN D 31 O GLN D 64 SHEET 4 G 4 GLU D 35 GLY D 42 -1 N GLY D 42 O GLN D 26 SHEET 1 H 5 ASP D 75 LEU D 83 0 SHEET 2 H 5 LEU D 87 GLU D 95 -1 N GLU D 95 O ASP D 75 SHEET 3 H 5 ALA D 105 TRP D 111 -1 N TRP D 111 O ASN D 88 SHEET 4 H 5 GLN D 13 ALA D 20 -1 N PHE D 19 O VAL D 106 SHEET 5 H 5 ALA D 48 ASN D 56 -1 N LEU D 55 O PHE D 14 LINK C1 FUL A 202 C1 PK6 A 203 1555 1555 1.51 LINK C1 FUL B 202 C1 PK6 B 203 1555 1555 1.51 LINK C1 FUL C 202 C1 PK6 C 203 1555 1555 1.49 LINK C1 FUL D 202 C1 PK6 D 203 1555 1555 1.47 LINK O ASN A 21 CA CA A 200 1555 1555 2.38 LINK OE1 GLU A 95 CA CA A 201 1555 1555 2.49 LINK OE2 GLU A 95 CA CA A 201 1555 1555 2.38 LINK OD1 ASP A 99 CA CA A 201 1555 1555 2.38 LINK OD1 ASP A 101 CA CA A 200 1555 1555 3.09 LINK OD2 ASP A 101 CA CA A 200 1555 1555 2.46 LINK OD1 ASP A 101 CA CA A 201 1555 1555 2.39 LINK OD1 ASN A 103 CA CA A 200 1555 1555 2.35 LINK OD1 ASP A 104 CA CA A 200 1555 1555 2.36 LINK OD1 ASP A 104 CA CA A 201 1555 1555 2.69 LINK OD2 ASP A 104 CA CA A 201 1555 1555 2.40 LINK O GLY A 114 CA CA B 200 1555 1555 2.41 LINK CA CA A 200 O3 FUL A 202 1555 1555 2.50 LINK CA CA A 200 O4 FUL A 202 1555 1555 2.50 LINK CA CA A 200 O GLY B 114 1555 1555 2.43 LINK CA CA A 201 O3 FUL A 202 1555 1555 2.46 LINK CA CA A 201 O2 FUL A 202 1555 1555 2.47 LINK O ASN B 21 CA CA B 200 1555 1555 2.32 LINK OE1 GLU B 95 CA CA B 201 1555 1555 2.54 LINK OE2 GLU B 95 CA CA B 201 1555 1555 2.42 LINK OD1 ASP B 99 CA CA B 201 1555 1555 2.35 LINK OD1 ASP B 101 CA CA B 200 1555 1555 3.11 LINK OD2 ASP B 101 CA CA B 200 1555 1555 2.48 LINK OD1 ASP B 101 CA CA B 201 1555 1555 2.34 LINK OD1 ASN B 103 CA CA B 200 1555 1555 2.35 LINK OD1 ASP B 104 CA CA B 200 1555 1555 2.37 LINK OD1 ASP B 104 CA CA B 201 1555 1555 2.63 LINK OD2 ASP B 104 CA CA B 201 1555 1555 2.42 LINK CA CA B 200 O3 FUL B 202 1555 1555 2.47 LINK CA CA B 200 O4 FUL B 202 1555 1555 2.50 LINK CA CA B 201 O2 FUL B 202 1555 1555 2.47 LINK CA CA B 201 O3 FUL B 202 1555 1555 2.46 LINK O ASN C 21 CA CA C 200 1555 1555 2.32 LINK OE1 GLU C 95 CA CA C 201 1555 1555 2.51 LINK OE2 GLU C 95 CA CA C 201 1555 1555 2.43 LINK OD1 ASP C 99 CA CA C 201 1555 1555 2.34 LINK OD1 ASP C 101 CA CA C 200 1555 1555 3.07 LINK OD2 ASP C 101 CA CA C 200 1555 1555 2.46 LINK OD1 ASP C 101 CA CA C 201 1555 1555 2.36 LINK OD1 ASN C 103 CA CA C 200 1555 1555 2.35 LINK OD1 ASP C 104 CA CA C 200 1555 1555 2.34 LINK OD1 ASP C 104 CA CA C 201 1555 1555 2.62 LINK OD2 ASP C 104 CA CA C 201 1555 1555 2.39 LINK O GLY C 114 CA CA D 200 1555 1555 2.54 LINK CA CA C 200 O4 FUL C 202 1555 1555 2.42 LINK CA CA C 200 O3 FUL C 202 1555 1555 2.46 LINK CA CA C 200 O GLY D 114 1555 1555 2.46 LINK CA CA C 201 O2 FUL C 202 1555 1555 2.53 LINK CA CA C 201 O3 FUL C 202 1555 1555 2.50 LINK O ASN D 21 CA CA D 200 1555 1555 2.30 LINK OE1 GLU D 95 CA CA D 201 1555 1555 2.53 LINK OE2 GLU D 95 CA CA D 201 1555 1555 2.39 LINK OD1 ASP D 99 CA CA D 201 1555 1555 2.38 LINK OD1 ASP D 101 CA CA D 200 1555 1555 3.12 LINK OD2 ASP D 101 CA CA D 200 1555 1555 2.50 LINK OD1 ASP D 101 CA CA D 201 1555 1555 2.42 LINK OD1 ASN D 103 CA CA D 200 1555 1555 2.32 LINK OD1 ASP D 104 CA CA D 200 1555 1555 2.35 LINK OD1 ASP D 104 CA CA D 201 1555 1555 2.60 LINK OD2 ASP D 104 CA CA D 201 1555 1555 2.30 LINK CA CA D 200 O3 FUL D 202 1555 1555 2.43 LINK CA CA D 200 O4 FUL D 202 1555 1555 2.44 LINK CA CA D 201 O2 FUL D 202 1555 1555 2.55 LINK CA CA D 201 O3 FUL D 202 1555 1555 2.51 CISPEP 1 TRP A 111 PRO A 112 0 -4.39 CISPEP 2 TRP B 111 PRO B 112 0 -5.08 CISPEP 3 TRP C 111 PRO C 112 0 -5.10 CISPEP 4 TRP D 111 PRO D 112 0 0.66 CRYST1 53.089 65.520 109.173 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009160 0.00000