HEADER IMMUNE SYSTEM 14-DEC-16 5MOJ TITLE CRYSTAL STRUCTURE OF IGE-FC EPSILON 3-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG EPSILON CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHE; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS IMMUNOGLOBULIN E, ANTIBODY, IGE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.A.DORE,A.M.DAVIES,N.DRINKWATER,A.J.BEAVIL,J.M.MACDONNELL,B.J.SUTTON REVDAT 4 17-JAN-24 5MOJ 1 HETSYN LINK REVDAT 3 29-JUL-20 5MOJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 03-APR-19 5MOJ 1 SOURCE REVDAT 1 10-JAN-18 5MOJ 0 JRNL AUTH K.A.DORE,A.M.DAVIES,N.DRINKWATER,A.J.BEAVIL,J.M.MCDONNELL, JRNL AUTH 2 B.J.SUTTON JRNL TITL THERMAL SENSITIVITY AND FLEXIBILITY OF THE C EPSILON 3 JRNL TITL 2 DOMAINS IN IMMUNOGLOBULIN E. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 1336 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28844738 JRNL DOI 10.1016/J.BBAPAP.2017.08.005 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.8811 - 4.7001 1.00 2487 128 0.1867 0.2340 REMARK 3 2 4.7001 - 3.7309 1.00 2464 123 0.1671 0.1825 REMARK 3 3 3.7309 - 3.2594 1.00 2431 137 0.1922 0.2145 REMARK 3 4 3.2594 - 2.9614 1.00 2430 118 0.2069 0.2278 REMARK 3 5 2.9614 - 2.7492 1.00 2421 133 0.2272 0.2863 REMARK 3 6 2.7492 - 2.5871 1.00 2417 144 0.2474 0.2725 REMARK 3 7 2.5871 - 2.4575 1.00 2434 148 0.2580 0.2765 REMARK 3 8 2.4575 - 2.3506 1.00 2419 140 0.2671 0.3165 REMARK 3 9 2.3506 - 2.2601 1.00 2402 132 0.2900 0.3809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3235 REMARK 3 ANGLE : 0.767 4446 REMARK 3 CHIRALITY : 0.047 545 REMARK 3 PLANARITY : 0.006 544 REMARK 3 DIHEDRAL : 14.106 1921 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6554 1.8564 -11.3476 REMARK 3 T TENSOR REMARK 3 T11: 0.4910 T22: 0.4360 REMARK 3 T33: 0.5088 T12: -0.0090 REMARK 3 T13: 0.0501 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.4339 L22: 2.6111 REMARK 3 L33: 1.3872 L12: -1.0097 REMARK 3 L13: -0.4752 L23: 0.2117 REMARK 3 S TENSOR REMARK 3 S11: 0.2908 S12: 0.3624 S13: -0.3609 REMARK 3 S21: -0.5256 S22: -0.0204 S23: -0.2029 REMARK 3 S31: -0.0307 S32: 0.0682 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8692 -2.4394 -4.0464 REMARK 3 T TENSOR REMARK 3 T11: 0.3946 T22: 0.4220 REMARK 3 T33: 0.5035 T12: 0.0750 REMARK 3 T13: -0.0138 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.6824 L22: 3.1248 REMARK 3 L33: 2.4286 L12: 1.5035 REMARK 3 L13: -1.2001 L23: -0.3925 REMARK 3 S TENSOR REMARK 3 S11: 0.2776 S12: 0.1448 S13: 0.0677 REMARK 3 S21: 0.1614 S22: 0.0482 S23: 0.1548 REMARK 3 S31: -0.3980 S32: -0.1313 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 459 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4282 -17.3299 4.7478 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.3958 REMARK 3 T33: 0.3640 T12: 0.0141 REMARK 3 T13: -0.0319 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 5.8822 L22: 4.8223 REMARK 3 L33: 4.2372 L12: 1.9899 REMARK 3 L13: -0.0842 L23: 0.9951 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: 0.1775 S13: -0.4005 REMARK 3 S21: 0.4396 S22: 0.0878 S23: -0.4065 REMARK 3 S31: 0.2871 S32: 0.1666 S33: 0.0030 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 336 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2950 -13.8196 -23.3322 REMARK 3 T TENSOR REMARK 3 T11: 0.4945 T22: 0.6269 REMARK 3 T33: 0.3420 T12: 0.0189 REMARK 3 T13: -0.0362 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.8311 L22: 1.9040 REMARK 3 L33: 2.2269 L12: -1.4931 REMARK 3 L13: -0.1137 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: -0.3402 S13: 0.1419 REMARK 3 S21: -0.2712 S22: 0.1073 S23: -0.1633 REMARK 3 S31: -0.2651 S32: 0.0062 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 385 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3576 -15.0152 -15.7411 REMARK 3 T TENSOR REMARK 3 T11: 0.5371 T22: 0.5623 REMARK 3 T33: 0.4592 T12: 0.0062 REMARK 3 T13: 0.0609 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 1.6183 L22: 1.3435 REMARK 3 L33: 2.1851 L12: -0.3431 REMARK 3 L13: 1.2978 L23: -0.9988 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: 0.0724 S13: 0.2373 REMARK 3 S21: -0.1826 S22: -0.1129 S23: -0.2629 REMARK 3 S31: -0.1727 S32: 0.3797 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 459 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0082 -23.3773 -0.6679 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.3445 REMARK 3 T33: 0.3900 T12: 0.0198 REMARK 3 T13: -0.0240 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 5.7182 L22: 4.8653 REMARK 3 L33: 4.0919 L12: 0.5895 REMARK 3 L13: 1.3787 L23: 0.8789 REMARK 3 S TENSOR REMARK 3 S11: 0.2059 S12: -0.1851 S13: 0.0773 REMARK 3 S21: 0.2729 S22: -0.1019 S23: 0.1043 REMARK 3 S31: 0.0892 S32: -0.0320 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23131 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 51.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 1.83400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000 0.15M AMMONIUM SULPHATE REMARK 280 0.1M MES, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.03250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 325 REMARK 465 ASP A 326 REMARK 465 PRO A 327 REMARK 465 CYS A 328 REMARK 465 ALA A 329 REMARK 465 ASP A 330 REMARK 465 SER A 331 REMARK 465 ASN A 332 REMARK 465 PRO A 333 REMARK 465 ARG A 334 REMARK 465 GLY A 335 REMARK 465 SER A 366 REMARK 465 LYS A 367 REMARK 465 GLY A 368 REMARK 465 THR A 369 REMARK 465 LEU A 425 REMARK 465 PRO A 426 REMARK 465 PRO A 545 REMARK 465 GLY A 546 REMARK 465 LYS A 547 REMARK 465 ALA B 325 REMARK 465 ASP B 326 REMARK 465 PRO B 327 REMARK 465 CYS B 328 REMARK 465 ALA B 329 REMARK 465 ASP B 330 REMARK 465 SER B 331 REMARK 465 ASN B 332 REMARK 465 PRO B 333 REMARK 465 ARG B 334 REMARK 465 GLY B 335 REMARK 465 LEU B 363 REMARK 465 ALA B 364 REMARK 465 PRO B 365 REMARK 465 SER B 366 REMARK 465 LYS B 367 REMARK 465 GLY B 368 REMARK 465 PRO B 423 REMARK 465 HIS B 424 REMARK 465 LEU B 425 REMARK 465 PRO B 426 REMARK 465 ARG B 427 REMARK 465 ALA B 428 REMARK 465 PRO B 545 REMARK 465 GLY B 546 REMARK 465 LYS B 547 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 351 CZ NH1 NH2 REMARK 470 LYS A 352 CE NZ REMARK 470 LEU A 363 CG CD1 CD2 REMARK 470 GLN A 371 CG CD OE1 NE2 REMARK 470 GLN A 383 OE1 NE2 REMARK 470 LYS A 388 CD CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 408 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 424 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 MET A 430 CG SD CE REMARK 470 LYS A 435 CE NZ REMARK 470 ARG A 457 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 458 CG OD1 OD2 REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 ARG A 460 CZ NH1 NH2 REMARK 470 ASP A 487 CG OD1 OD2 REMARK 470 GLN A 494 CG CD OE1 NE2 REMARK 470 LYS A 497 CD CE NZ REMARK 470 LYS A 499 CG CD CE NZ REMARK 470 ARG A 513 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 518 CG CD OE1 NE2 REMARK 470 LYS A 519 CG CD CE NZ REMARK 470 GLU A 521 CD OE1 OE2 REMARK 470 GLU A 529 CD OE1 OE2 REMARK 470 LYS B 352 CD CE NZ REMARK 470 GLN B 371 CG CD OE1 NE2 REMARK 470 ARG B 387 CZ NH1 NH2 REMARK 470 LYS B 388 CD CE NZ REMARK 470 GLU B 389 CG CD OE1 OE2 REMARK 470 LYS B 391 CG CD CE NZ REMARK 470 ARG B 393 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 397 CD1 CD2 REMARK 470 ARG B 408 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 417 CG CD OE1 NE2 REMARK 470 ARG B 419 NE CZ NH1 NH2 REMARK 470 HIS B 422 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 430 CG SD CE REMARK 470 LYS B 435 CG CD CE NZ REMARK 470 GLU B 452 CG CD OE1 OE2 REMARK 470 ARG B 457 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 458 CB CG OD1 OD2 REMARK 470 LYS B 459 CE NZ REMARK 470 ARG B 460 CZ NH1 NH2 REMARK 470 GLU B 472 CD OE1 OE2 REMARK 470 GLU B 482 CG CD OE1 OE2 REMARK 470 LYS B 497 CG CD CE NZ REMARK 470 LYS B 499 CG CD CE NZ REMARK 470 LYS B 519 CG CD CE NZ REMARK 470 GLU B 521 CD OE1 OE2 REMARK 470 GLU B 529 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 350 -64.08 -100.80 REMARK 500 SER A 437 -159.54 -96.15 REMARK 500 PRO A 471 -168.64 -78.31 REMARK 500 ASP A 520 39.08 -91.14 REMARK 500 ILE B 350 -65.15 -102.03 REMARK 500 ASP B 520 39.74 -87.54 REMARK 500 SER B 534 18.62 57.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MOJ A 328 547 UNP P01854 IGHE_HUMAN 209 428 DBREF 5MOJ B 328 547 UNP P01854 IGHE_HUMAN 209 428 SEQADV 5MOJ ALA A 325 UNP P01854 EXPRESSION TAG SEQADV 5MOJ ASP A 326 UNP P01854 EXPRESSION TAG SEQADV 5MOJ PRO A 327 UNP P01854 EXPRESSION TAG SEQADV 5MOJ GLN A 371 UNP P01854 ASN 252 CONFLICT SEQADV 5MOJ GLN A 383 UNP P01854 ASN 264 CONFLICT SEQADV 5MOJ ALA B 325 UNP P01854 EXPRESSION TAG SEQADV 5MOJ ASP B 326 UNP P01854 EXPRESSION TAG SEQADV 5MOJ PRO B 327 UNP P01854 EXPRESSION TAG SEQADV 5MOJ GLN B 371 UNP P01854 ASN 252 CONFLICT SEQADV 5MOJ GLN B 383 UNP P01854 ASN 264 CONFLICT SEQRES 1 A 223 ALA ASP PRO CYS ALA ASP SER ASN PRO ARG GLY VAL SER SEQRES 2 A 223 ALA TYR LEU SER ARG PRO SER PRO PHE ASP LEU PHE ILE SEQRES 3 A 223 ARG LYS SER PRO THR ILE THR CYS LEU VAL VAL ASP LEU SEQRES 4 A 223 ALA PRO SER LYS GLY THR VAL GLN LEU THR TRP SER ARG SEQRES 5 A 223 ALA SER GLY LYS PRO VAL GLN HIS SER THR ARG LYS GLU SEQRES 6 A 223 GLU LYS GLN ARG ASN GLY THR LEU THR VAL THR SER THR SEQRES 7 A 223 LEU PRO VAL GLY THR ARG ASP TRP ILE GLU GLY GLU THR SEQRES 8 A 223 TYR GLN CYS ARG VAL THR HIS PRO HIS LEU PRO ARG ALA SEQRES 9 A 223 LEU MET ARG SER THR THR LYS THR SER GLY PRO ARG ALA SEQRES 10 A 223 ALA PRO GLU VAL TYR ALA PHE ALA THR PRO GLU TRP PRO SEQRES 11 A 223 GLY SER ARG ASP LYS ARG THR LEU ALA CYS LEU ILE GLN SEQRES 12 A 223 ASN PHE MET PRO GLU ASP ILE SER VAL GLN TRP LEU HIS SEQRES 13 A 223 ASN GLU VAL GLN LEU PRO ASP ALA ARG HIS SER THR THR SEQRES 14 A 223 GLN PRO ARG LYS THR LYS GLY SER GLY PHE PHE VAL PHE SEQRES 15 A 223 SER ARG LEU GLU VAL THR ARG ALA GLU TRP GLU GLN LYS SEQRES 16 A 223 ASP GLU PHE ILE CYS ARG ALA VAL HIS GLU ALA ALA SER SEQRES 17 A 223 PRO SER GLN THR VAL GLN ARG ALA VAL SER VAL ASN PRO SEQRES 18 A 223 GLY LYS SEQRES 1 B 223 ALA ASP PRO CYS ALA ASP SER ASN PRO ARG GLY VAL SER SEQRES 2 B 223 ALA TYR LEU SER ARG PRO SER PRO PHE ASP LEU PHE ILE SEQRES 3 B 223 ARG LYS SER PRO THR ILE THR CYS LEU VAL VAL ASP LEU SEQRES 4 B 223 ALA PRO SER LYS GLY THR VAL GLN LEU THR TRP SER ARG SEQRES 5 B 223 ALA SER GLY LYS PRO VAL GLN HIS SER THR ARG LYS GLU SEQRES 6 B 223 GLU LYS GLN ARG ASN GLY THR LEU THR VAL THR SER THR SEQRES 7 B 223 LEU PRO VAL GLY THR ARG ASP TRP ILE GLU GLY GLU THR SEQRES 8 B 223 TYR GLN CYS ARG VAL THR HIS PRO HIS LEU PRO ARG ALA SEQRES 9 B 223 LEU MET ARG SER THR THR LYS THR SER GLY PRO ARG ALA SEQRES 10 B 223 ALA PRO GLU VAL TYR ALA PHE ALA THR PRO GLU TRP PRO SEQRES 11 B 223 GLY SER ARG ASP LYS ARG THR LEU ALA CYS LEU ILE GLN SEQRES 12 B 223 ASN PHE MET PRO GLU ASP ILE SER VAL GLN TRP LEU HIS SEQRES 13 B 223 ASN GLU VAL GLN LEU PRO ASP ALA ARG HIS SER THR THR SEQRES 14 B 223 GLN PRO ARG LYS THR LYS GLY SER GLY PHE PHE VAL PHE SEQRES 15 B 223 SER ARG LEU GLU VAL THR ARG ALA GLU TRP GLU GLN LYS SEQRES 16 B 223 ASP GLU PHE ILE CYS ARG ALA VAL HIS GLU ALA ALA SER SEQRES 17 B 223 PRO SER GLN THR VAL GLN ARG ALA VAL SER VAL ASN PRO SEQRES 18 B 223 GLY LYS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET EDO A 609 4 HET EDO A 610 4 HET SO4 B 606 5 HET SO4 B 607 5 HET SO4 B 608 5 HET SO4 B 609 5 HET PEG B 610 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 5 SO4 7(O4 S 2-) FORMUL 8 EDO 2(C2 H6 O2) FORMUL 14 PEG C4 H10 O3 FORMUL 15 HOH *37(H2 O) HELIX 1 AA1 SER A 344 ILE A 350 1 7 HELIX 2 AA2 GLY A 406 GLU A 412 1 7 HELIX 3 AA3 PRO A 486 ALA A 488 5 3 HELIX 4 AA4 ARG A 513 LYS A 519 1 7 HELIX 5 AA5 SER B 344 ILE B 350 1 7 HELIX 6 AA6 GLY B 406 GLY B 413 1 8 HELIX 7 AA7 PRO B 486 ALA B 488 5 3 HELIX 8 AA8 ARG B 513 LYS B 519 1 7 SHEET 1 AA1 4 SER A 337 LEU A 340 0 SHEET 2 AA1 4 THR A 355 ASP A 362 -1 O LEU A 359 N TYR A 339 SHEET 3 AA1 4 LEU A 397 PRO A 404 -1 O VAL A 399 N VAL A 360 SHEET 4 AA1 4 THR A 386 LYS A 391 -1 N LYS A 388 O THR A 400 SHEET 1 AA2 3 GLN A 371 ARG A 376 0 SHEET 2 AA2 3 TYR A 416 THR A 421 -1 O GLN A 417 N SER A 375 SHEET 3 AA2 3 ALA A 428 THR A 433 -1 O ARG A 431 N CYS A 418 SHEET 1 AA3 4 GLU A 444 ALA A 449 0 SHEET 2 AA3 4 LYS A 459 PHE A 469 -1 O ALA A 463 N PHE A 448 SHEET 3 AA3 4 PHE A 503 THR A 512 -1 O LEU A 509 N LEU A 462 SHEET 4 AA3 4 HIS A 490 THR A 492 -1 N SER A 491 O ARG A 508 SHEET 1 AA4 4 GLU A 444 ALA A 449 0 SHEET 2 AA4 4 LYS A 459 PHE A 469 -1 O ALA A 463 N PHE A 448 SHEET 3 AA4 4 PHE A 503 THR A 512 -1 O LEU A 509 N LEU A 462 SHEET 4 AA4 4 ARG A 496 LYS A 497 -1 N ARG A 496 O PHE A 504 SHEET 1 AA5 4 VAL A 483 GLN A 484 0 SHEET 2 AA5 4 SER A 475 HIS A 480 -1 N HIS A 480 O VAL A 483 SHEET 3 AA5 4 PHE A 522 VAL A 527 -1 O VAL A 527 N SER A 475 SHEET 4 AA5 4 THR A 536 VAL A 541 -1 O VAL A 537 N ALA A 526 SHEET 1 AA6 4 SER B 337 SER B 341 0 SHEET 2 AA6 4 THR B 355 VAL B 361 -1 O LEU B 359 N TYR B 339 SHEET 3 AA6 4 LEU B 397 PRO B 404 -1 O VAL B 399 N VAL B 360 SHEET 4 AA6 4 THR B 386 LYS B 391 -1 N LYS B 388 O THR B 400 SHEET 1 AA7 3 GLN B 371 ARG B 376 0 SHEET 2 AA7 3 TYR B 416 THR B 421 -1 O THR B 421 N GLN B 371 SHEET 3 AA7 3 MET B 430 THR B 433 -1 O ARG B 431 N CYS B 418 SHEET 1 AA8 4 GLU B 444 ALA B 449 0 SHEET 2 AA8 4 LYS B 459 PHE B 469 -1 O LEU B 465 N TYR B 446 SHEET 3 AA8 4 PHE B 503 THR B 512 -1 O LEU B 509 N LEU B 462 SHEET 4 AA8 4 HIS B 490 THR B 492 -1 N SER B 491 O ARG B 508 SHEET 1 AA9 4 GLU B 444 ALA B 449 0 SHEET 2 AA9 4 LYS B 459 PHE B 469 -1 O LEU B 465 N TYR B 446 SHEET 3 AA9 4 PHE B 503 THR B 512 -1 O LEU B 509 N LEU B 462 SHEET 4 AA9 4 ARG B 496 LYS B 497 -1 N ARG B 496 O PHE B 504 SHEET 1 AB1 4 VAL B 483 GLN B 484 0 SHEET 2 AB1 4 SER B 475 HIS B 480 -1 N HIS B 480 O VAL B 483 SHEET 3 AB1 4 PHE B 522 VAL B 527 -1 O VAL B 527 N SER B 475 SHEET 4 AB1 4 THR B 536 VAL B 541 -1 O VAL B 537 N ALA B 526 SSBOND 1 CYS A 358 CYS A 418 1555 1555 2.07 SSBOND 2 CYS A 464 CYS A 524 1555 1555 2.06 SSBOND 3 CYS B 358 CYS B 418 1555 1555 2.07 SSBOND 4 CYS B 464 CYS B 524 1555 1555 2.05 LINK ND2 ASN A 394 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 394 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.45 CISPEP 1 MET A 470 PRO A 471 0 -3.45 CISPEP 2 SER A 532 PRO A 533 0 0.86 CISPEP 3 MET B 470 PRO B 471 0 1.06 CISPEP 4 SER B 532 PRO B 533 0 -4.98 CRYST1 46.532 104.065 52.937 90.00 101.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021491 0.000000 0.004386 0.00000 SCALE2 0.000000 0.009609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019280 0.00000