data_5MSF # _entry.id 5MSF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5MSF pdb_00005msf 10.2210/pdb5msf/pdb RCSB PR0001 ? ? WWPDB D_1000179741 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5MSF _pdbx_database_status.recvd_initial_deposition_date 1998-05-15 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rowsell, S.' 1 'Stonehouse, N.J.' 2 'Convery, M.A.' 3 'Adams, C.J.' 4 'Ellington, A.D.' 5 'Hirao, I.' 6 'Peabody, D.S.' 7 'Stockley, P.G.' 8 'Phillips, S.E.V.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structures of a series of RNA aptamers complexed to the same protein target.' Nat.Struct.Biol. 5 970 975 1998 NSBIEW US 1072-8368 2024 ? 9808042 10.1038/2946 1 'Crystal Structure of an RNA Aptamer-Protein Complex at 2.8 A Resolution' Nat.Struct.Biol. 5 133 ? 1998 NSBIEW US 1072-8368 2024 ? ? ? 2 ;The Three-Dimensional Structures of Two Complexes between Recombinant MS2 Capsids and RNA Operator Fragments Reveal Sequence-Specific Protein-RNA Interactions ; J.Mol.Biol. 270 724 ? 1997 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Crystal Structure of an RNA Bacteriophage Coat Protein-Operator Complex' Nature 371 623 ? 1994 NATUAS UK 0028-0836 0006 ? ? ? 4 'The Refined Structure of Bacteriophage MS2 at 2.8 A Resolution' J.Mol.Biol. 234 620 ? 1993 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rowsell, S.' 1 ? primary 'Stonehouse, N.J.' 2 ? primary 'Convery, M.A.' 3 ? primary 'Adams, C.J.' 4 ? primary 'Ellington, A.D.' 5 ? primary 'Hirao, I.' 6 ? primary 'Peabody, D.S.' 7 ? primary 'Stockley, P.G.' 8 ? primary 'Phillips, S.E.' 9 ? 1 'Convery, M.A.' 10 ? 1 'Rowsell, S.' 11 ? 1 'Stonehouse, N.J.' 12 ? 1 'Ellington, A.D.' 13 ? 1 'Hirao, I.' 14 ? 1 'Murray, J.B.' 15 ? 1 'Peabody, D.S.' 16 ? 1 'Phillips, S.E.' 17 ? 1 'Stockley, P.G.' 18 ? 2 'Valegard, K.' 19 ? 2 'Murray, J.B.' 20 ? 2 'Stonehouse, N.J.' 21 ? 2 'Van Den Worm, S.' 22 ? 2 'Stockley, P.G.' 23 ? 2 'Liljas, L.' 24 ? 3 'Valegard, K.' 25 ? 3 'Murray, J.B.' 26 ? 3 'Stockley, P.G.' 27 ? 3 'Stonehouse, N.J.' 28 ? 3 'Liljas, L.' 29 ? 4 'Golmohammadi, R.' 30 ? 4 'Valegard, K.' 31 ? 4 'Fridborg, K.' 32 ? 4 'Liljas, L.' 33 ? # _cell.entry_id 5MSF _cell.length_a 287.300 _cell.length_b 287.300 _cell.length_c 651.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 540 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 5MSF _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*GP*G)-3'" 5825.563 2 ? ? ? ? 2 polymer man 'MS2 PROTEIN CAPSID' 13738.464 3 ? ? ? ? 3 water nat water 18.015 101 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'F5, 18-NT RNA APTAMER' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CCGGAGGAUCACCACGGG CCGGAGGAUCACCACGGG R,S ? 2 'polypeptide(L)' no no ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; ;ASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKVTCSVRQSSAQNRKYTIKVEVPKVATQTVGGVELPVA AWRSYLNMELTIPIFATNSDCELIVKAMQGLLKDGNPIPSAIAANSGIY ; A,B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 G n 1 7 G n 1 8 A n 1 9 U n 1 10 C n 1 11 A n 1 12 C n 1 13 C n 1 14 A n 1 15 C n 1 16 G n 1 17 G n 1 18 G n 2 1 ALA n 2 2 SER n 2 3 ASN n 2 4 PHE n 2 5 THR n 2 6 GLN n 2 7 PHE n 2 8 VAL n 2 9 LEU n 2 10 VAL n 2 11 ASP n 2 12 ASN n 2 13 GLY n 2 14 GLY n 2 15 THR n 2 16 GLY n 2 17 ASP n 2 18 VAL n 2 19 THR n 2 20 VAL n 2 21 ALA n 2 22 PRO n 2 23 SER n 2 24 ASN n 2 25 PHE n 2 26 ALA n 2 27 ASN n 2 28 GLY n 2 29 VAL n 2 30 ALA n 2 31 GLU n 2 32 TRP n 2 33 ILE n 2 34 SER n 2 35 SER n 2 36 ASN n 2 37 SER n 2 38 ARG n 2 39 SER n 2 40 GLN n 2 41 ALA n 2 42 TYR n 2 43 LYS n 2 44 VAL n 2 45 THR n 2 46 CYS n 2 47 SER n 2 48 VAL n 2 49 ARG n 2 50 GLN n 2 51 SER n 2 52 SER n 2 53 ALA n 2 54 GLN n 2 55 ASN n 2 56 ARG n 2 57 LYS n 2 58 TYR n 2 59 THR n 2 60 ILE n 2 61 LYS n 2 62 VAL n 2 63 GLU n 2 64 VAL n 2 65 PRO n 2 66 LYS n 2 67 VAL n 2 68 ALA n 2 69 THR n 2 70 GLN n 2 71 THR n 2 72 VAL n 2 73 GLY n 2 74 GLY n 2 75 VAL n 2 76 GLU n 2 77 LEU n 2 78 PRO n 2 79 VAL n 2 80 ALA n 2 81 ALA n 2 82 TRP n 2 83 ARG n 2 84 SER n 2 85 TYR n 2 86 LEU n 2 87 ASN n 2 88 MET n 2 89 GLU n 2 90 LEU n 2 91 THR n 2 92 ILE n 2 93 PRO n 2 94 ILE n 2 95 PHE n 2 96 ALA n 2 97 THR n 2 98 ASN n 2 99 SER n 2 100 ASP n 2 101 CYS n 2 102 GLU n 2 103 LEU n 2 104 ILE n 2 105 VAL n 2 106 LYS n 2 107 ALA n 2 108 MET n 2 109 GLN n 2 110 GLY n 2 111 LEU n 2 112 LEU n 2 113 LYS n 2 114 ASP n 2 115 GLY n 2 116 ASN n 2 117 PRO n 2 118 ILE n 2 119 PRO n 2 120 SER n 2 121 ALA n 2 122 ILE n 2 123 ALA n 2 124 ALA n 2 125 ASN n 2 126 SER n 2 127 GLY n 2 128 ILE n 2 129 TYR n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Levivirus _entity_src_gen.pdbx_gene_src_gene 'COAT PROTEIN' _entity_src_gen.gene_src_species 'Enterobacteria phage MS2' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacterio phage MS2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12022 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TG1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PTAC _entity_src_gen.pdbx_host_org_vector "PTACACP'" _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'FAMILY 5 CONSENSUS SEQUENCE FROM IN VITRO SELECTION' # loop_ _struct_ref.id _struct_ref.db_code _struct_ref.db_name _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 COAT_BPMS2 UNP 2 P03612 ? ? ? 2 5MSF PDB 1 5MSF ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5MSF A 1 ? 129 ? P03612 2 ? 130 ? 1 129 2 1 5MSF B 1 ? 129 ? P03612 2 ? 130 ? 1 129 3 1 5MSF C 1 ? 129 ? P03612 2 ? 130 ? 1 129 4 2 5MSF R 1 ? 18 ? 5MSF 1 ? 18 ? 1 18 5 2 5MSF S 1 ? 18 ? 5MSF 1 ? 18 ? 1 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5MSF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 8 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol 80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details ;PROTEIN IN 1.25% OR 1.5% PEG 8000, 0.1M NA PHOSPHATE PH 7.4 AND 0.02% NA AZIDE WAS EQUILIBRATED AGAINST 0.35M OR 0.4M NA PHOSPHATE PH 7.4, 0.02% NA AZIDE AT 300 OR 370 C. WASHED CRYSTALS WERE SOAKED IN 2MG/ML RNA. ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 NA3PO4 ? ? ? 1 3 1 NAN3 ? ? ? 1 4 2 NA3PO4 ? ? ? 1 5 2 NAN3 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 278 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1997-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID2 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 5MSF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.8 _reflns.number_obs 172487 _reflns.number_all ? _reflns.percent_possible_obs 69 _reflns.pdbx_Rmerge_I_obs 0.185 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 3.0 _reflns.B_iso_Wilson_estimate 44.7 _reflns.pdbx_redundancy 2.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 34 _reflns_shell.Rmerge_I_obs 0.361 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 1.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 5MSF _refine.ls_number_reflns_obs 172479 _refine.ls_number_reflns_all 172479 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1000000.0 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 68.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.197 _refine.ls_R_factor_R_free_error 0.002 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.0 _refine.ls_number_reflns_R_free 6927 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 37.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB ENTRY 2MS2' _refine.pdbx_method_to_determine_struct 'DIFFERENCE FOURIER' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 5MSF _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.34 _refine_analyze.Luzzati_d_res_low_obs 30.0 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.37 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2908 _refine_hist.pdbx_number_atoms_nucleic_acid 729 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 3738 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.38 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 5.64 2.00 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 7.69 2.50 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 8.87 2.50 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 10.69 3.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 13699 _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.percent_reflns_obs 34.1 _refine_ls_shell.R_factor_R_free 0.318 _refine_ls_shell.R_factor_R_free_error 0.013 _refine_ls_shell.percent_reflns_R_free 3.9 _refine_ls_shell.number_reflns_R_free 557 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM TOPH19.SOL 'X-RAY DIFFRACTION' 3 ? DNA-RNA.TOP 'X-RAY DIFFRACTION' # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000 0.00000 0.00000 2 generate ? 0.50000000 -0.86602540 0.00000079 0.64549670 0.37267830 0.66666701 -0.57735086 -0.33333299 0.74535569 0.00000 0.00000 0.00000 3 generate ? -0.30901699 -0.75576184 -0.57734958 0.17841019 -0.64234953 0.74535688 -0.93417252 0.12732289 0.33333254 0.00000 0.00000 0.00000 4 generate ? -0.30901699 0.17841019 -0.93417252 -0.75576184 -0.64234953 0.12732289 -0.57734958 0.74535688 0.33333254 0.00000 0.00000 0.00000 5 generate ? 0.50000000 0.64549670 -0.57735086 -0.86602540 0.37267830 -0.33333299 0.00000079 0.66666701 0.74535569 0.00000 0.00000 0.00000 6 generate ? 0.30901699 -0.75576184 -0.57734958 -0.75576184 -0.56366040 0.33333317 -0.57734958 0.33333317 -0.74535660 0.00000 0.00000 0.00000 7 generate ? 0.00000000 -0.35682294 -0.93417203 -0.93417203 0.33333401 -0.12732261 0.35682294 0.87267739 -0.33333401 0.00000 0.00000 0.00000 8 generate ? 0.30901699 0.17841019 -0.93417252 -0.17841019 0.97568389 0.12732142 0.93417252 0.12732142 0.33333310 0.00000 0.00000 0.00000 9 generate ? 0.80901699 0.11026356 -0.57735037 0.46708650 0.47568355 0.74535586 0.35682166 -0.87267813 0.33333345 0.00000 0.00000 0.00000 10 generate ? 0.80901699 -0.46708650 -0.35682166 0.11026356 -0.47568355 0.87267813 -0.57735037 -0.74535586 -0.33333345 0.00000 0.00000 0.00000 # _struct.entry_id 5MSF _struct.title 'MS2 PROTEIN CAPSID/RNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5MSF _struct_keywords.pdbx_keywords Virus/RNA _struct_keywords.text 'CAPSID PROTEIN MS2-RNA APTAMER COMPLEX, RNA-PROTEIN COMPLEX, RNA STEM LOOP, BACTERIOPHAGE MS2, Icosahedral virus, Virus-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_biol.id 1 _struct_biol.details ;THE COMPLETE PARTICLE CAN BE GENERATED BY APPLYING THE NCS MATRICES TO THE COORDINATES AND THEN APPLYING THE CRYSTALLOGRAPHIC SYMMETRY OPERATORS. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA C 26 ? GLY C 28 ? ALA A 26 GLY A 28 5 ? 3 HELX_P HELX_P2 2 ASN C 98 ? LEU C 111 ? ASN A 98 LEU A 111 1 ? 14 HELX_P HELX_P3 3 PRO C 117 ? ALA C 124 ? PRO A 117 ALA A 124 1 ? 8 HELX_P HELX_P4 4 ALA D 26 ? GLY D 28 ? ALA B 26 GLY B 28 5 ? 3 HELX_P HELX_P5 5 VAL D 79 ? ALA D 81 ? VAL B 79 ALA B 81 5 ? 3 HELX_P HELX_P6 6 ASN D 98 ? LEU D 111 ? ASN B 98 LEU B 111 1 ? 14 HELX_P HELX_P7 7 PRO D 117 ? ALA D 124 ? PRO B 117 ALA B 124 1 ? 8 HELX_P HELX_P8 8 ARG E 38 ? GLN E 40 ? ARG C 38 GLN C 40 5 ? 3 HELX_P HELX_P9 9 ASN E 98 ? LEU E 111 ? ASN C 98 LEU C 111 1 ? 14 HELX_P HELX_P10 10 PRO E 117 ? ALA E 124 ? PRO C 117 ALA C 124 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 17 N1 ? ? R C 1 R G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 17 O6 ? ? R C 1 R G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 17 N2 ? ? R C 1 R G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 16 N1 ? ? R C 2 R G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 16 O6 ? ? R C 2 R G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 16 N2 ? ? R C 2 R G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 15 N3 ? ? R G 3 R C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 15 O2 ? ? R G 3 R C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 15 N4 ? ? R G 3 R C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A A 14 N1 ? ? R G 4 R A 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A A 14 N6 ? ? R G 4 R A 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 13 N3 ? ? R G 6 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 13 O2 ? ? R G 6 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 13 N4 ? ? R G 6 R C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 12 N3 ? ? R G 7 R C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 12 O2 ? ? R G 7 R C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 12 N4 ? ? R G 7 R C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 16 N1 ? ? S C 2 S G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 16 O6 ? ? S C 2 S G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 16 N2 ? ? S C 2 S G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 15 N3 ? ? S G 3 S C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 15 O2 ? ? S G 3 S C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 15 N4 ? ? S G 3 S C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 4 N1 ? ? ? 1_555 B A 14 N1 ? ? S G 4 S A 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog25 hydrog ? ? B G 4 O6 ? ? ? 1_555 B A 14 N6 ? ? S G 4 S A 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog26 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 13 N3 ? ? S G 6 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 13 O2 ? ? S G 6 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 13 N4 ? ? S G 6 S C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 12 N3 ? ? S G 7 S C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 12 O2 ? ? S G 7 S C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 12 N4 ? ? S G 7 S C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id D _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 D _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.78 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 75 ? PRO C 93 ? VAL A 75 PRO A 93 A 2 ASN C 55 ? VAL C 72 ? ASN A 55 VAL A 72 A 3 LYS C 43 ? ARG C 49 ? LYS A 43 ARG A 49 A 4 ALA C 30 ? SER C 34 ? ALA A 30 SER A 34 A 5 VAL C 18 ? ASN C 24 ? VAL A 18 ASN A 24 A 6 PHE C 7 ? VAL C 10 ? PHE A 7 VAL A 10 B 1 ARG D 83 ? PRO D 93 ? ARG B 83 PRO B 93 B 2 ASN D 55 ? PRO D 65 ? ASN B 55 PRO B 65 B 3 LYS D 43 ? ARG D 49 ? LYS B 43 ARG B 49 B 4 ALA D 30 ? ILE D 33 ? ALA B 30 ILE B 33 B 5 ALA D 21 ? ASN D 24 ? ALA B 21 ASN B 24 C 1 PHE D 7 ? VAL D 10 ? PHE B 7 VAL B 10 C 2 VAL D 18 ? VAL D 20 ? VAL B 18 VAL B 20 D 1 VAL E 75 ? PRO E 93 ? VAL C 75 PRO C 93 D 2 ASN E 55 ? VAL E 72 ? ASN C 55 VAL C 72 D 3 LYS E 43 ? GLN E 50 ? LYS C 43 GLN C 50 D 4 VAL E 29 ? SER E 34 ? VAL C 29 SER C 34 D 5 VAL E 18 ? ALA E 26 ? VAL C 18 ALA C 26 D 6 PHE E 7 ? VAL E 10 ? PHE C 7 VAL C 10 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL C 75 ? O VAL A 75 N VAL C 72 ? N VAL A 72 A 2 3 O LYS C 57 ? O LYS A 57 N ARG C 49 ? N ARG A 49 A 3 4 O VAL C 44 ? O VAL A 44 N TRP C 32 ? N TRP A 32 A 4 5 O GLU C 31 ? O GLU A 31 N ASN C 24 ? N ASN A 24 A 5 6 O VAL C 18 ? O VAL A 18 N VAL C 10 ? N VAL A 10 B 1 2 O SER D 84 ? O SER B 84 N VAL D 64 ? N VAL B 64 B 2 3 O LYS D 57 ? O LYS B 57 N ARG D 49 ? N ARG B 49 B 3 4 O VAL D 44 ? O VAL B 44 N TRP D 32 ? N TRP B 32 B 4 5 O GLU D 31 ? O GLU B 31 N ASN D 24 ? N ASN B 24 C 1 2 O PHE D 7 ? O PHE B 7 N VAL D 20 ? N VAL B 20 D 1 2 O VAL E 75 ? O VAL C 75 N VAL E 72 ? N VAL C 72 D 2 3 O LYS E 57 ? O LYS C 57 N ARG E 49 ? N ARG C 49 D 3 4 O VAL E 44 ? O VAL C 44 N TRP E 32 ? N TRP C 32 D 4 5 O VAL E 29 ? O VAL C 29 N ALA E 26 ? N ALA C 26 D 5 6 O VAL E 18 ? O VAL C 18 N VAL E 10 ? N VAL C 10 # _database_PDB_matrix.entry_id 5MSF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5MSF _atom_sites.fract_transf_matrix[1][1] 0.003481 _atom_sites.fract_transf_matrix[1][2] 0.002010 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004019 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.001535 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C R . n A 1 2 C 2 2 2 C C R . n A 1 3 G 3 3 3 G G R . n A 1 4 G 4 4 4 G G R . n A 1 5 A 5 5 5 A A R . n A 1 6 G 6 6 6 G G R . n A 1 7 G 7 7 7 G G R . n A 1 8 A 8 8 8 A A R . n A 1 9 U 9 9 9 U U R . n A 1 10 C 10 10 10 C C R . n A 1 11 A 11 11 11 A A R . n A 1 12 C 12 12 12 C C R . n A 1 13 C 13 13 13 C C R . n A 1 14 A 14 14 14 A A R . n A 1 15 C 15 15 15 C C R . n A 1 16 G 16 16 16 G G R . n A 1 17 G 17 17 17 G G R . n A 1 18 G 18 18 18 G G R . n B 1 1 C 1 1 ? ? ? S . n B 1 2 C 2 2 2 C C S . n B 1 3 G 3 3 3 G G S . n B 1 4 G 4 4 4 G G S . n B 1 5 A 5 5 5 A A S . n B 1 6 G 6 6 6 G G S . n B 1 7 G 7 7 7 G G S . n B 1 8 A 8 8 8 A A S . n B 1 9 U 9 9 9 U U S . n B 1 10 C 10 10 10 C C S . n B 1 11 A 11 11 11 A A S . n B 1 12 C 12 12 12 C C S . n B 1 13 C 13 13 13 C C S . n B 1 14 A 14 14 14 A A S . n B 1 15 C 15 15 15 C C S . n B 1 16 G 16 16 16 G G S . n B 1 17 G 17 17 17 G G S . n B 1 18 G 18 18 ? ? ? S . n C 2 1 ALA 1 1 1 ALA ALA A . n C 2 2 SER 2 2 2 SER SER A . n C 2 3 ASN 3 3 3 ASN ASN A . n C 2 4 PHE 4 4 4 PHE PHE A . n C 2 5 THR 5 5 5 THR THR A . n C 2 6 GLN 6 6 6 GLN GLN A . n C 2 7 PHE 7 7 7 PHE PHE A . n C 2 8 VAL 8 8 8 VAL VAL A . n C 2 9 LEU 9 9 9 LEU LEU A . n C 2 10 VAL 10 10 10 VAL VAL A . n C 2 11 ASP 11 11 11 ASP ASP A . n C 2 12 ASN 12 12 12 ASN ASN A . n C 2 13 GLY 13 13 13 GLY GLY A . n C 2 14 GLY 14 14 14 GLY GLY A . n C 2 15 THR 15 15 15 THR THR A . n C 2 16 GLY 16 16 16 GLY GLY A . n C 2 17 ASP 17 17 17 ASP ASP A . n C 2 18 VAL 18 18 18 VAL VAL A . n C 2 19 THR 19 19 19 THR THR A . n C 2 20 VAL 20 20 20 VAL VAL A . n C 2 21 ALA 21 21 21 ALA ALA A . n C 2 22 PRO 22 22 22 PRO PRO A . n C 2 23 SER 23 23 23 SER SER A . n C 2 24 ASN 24 24 24 ASN ASN A . n C 2 25 PHE 25 25 25 PHE PHE A . n C 2 26 ALA 26 26 26 ALA ALA A . n C 2 27 ASN 27 27 27 ASN ASN A . n C 2 28 GLY 28 28 28 GLY GLY A . n C 2 29 VAL 29 29 29 VAL VAL A . n C 2 30 ALA 30 30 30 ALA ALA A . n C 2 31 GLU 31 31 31 GLU GLU A . n C 2 32 TRP 32 32 32 TRP TRP A . n C 2 33 ILE 33 33 33 ILE ILE A . n C 2 34 SER 34 34 34 SER SER A . n C 2 35 SER 35 35 35 SER SER A . n C 2 36 ASN 36 36 36 ASN ASN A . n C 2 37 SER 37 37 37 SER SER A . n C 2 38 ARG 38 38 38 ARG ARG A . n C 2 39 SER 39 39 39 SER SER A . n C 2 40 GLN 40 40 40 GLN GLN A . n C 2 41 ALA 41 41 41 ALA ALA A . n C 2 42 TYR 42 42 42 TYR TYR A . n C 2 43 LYS 43 43 43 LYS LYS A . n C 2 44 VAL 44 44 44 VAL VAL A . n C 2 45 THR 45 45 45 THR THR A . n C 2 46 CYS 46 46 46 CYS CYS A . n C 2 47 SER 47 47 47 SER SER A . n C 2 48 VAL 48 48 48 VAL VAL A . n C 2 49 ARG 49 49 49 ARG ARG A . n C 2 50 GLN 50 50 50 GLN GLN A . n C 2 51 SER 51 51 51 SER SER A . n C 2 52 SER 52 52 52 SER SER A . n C 2 53 ALA 53 53 53 ALA ALA A . n C 2 54 GLN 54 54 54 GLN GLN A . n C 2 55 ASN 55 55 55 ASN ASN A . n C 2 56 ARG 56 56 56 ARG ARG A . n C 2 57 LYS 57 57 57 LYS LYS A . n C 2 58 TYR 58 58 58 TYR TYR A . n C 2 59 THR 59 59 59 THR THR A . n C 2 60 ILE 60 60 60 ILE ILE A . n C 2 61 LYS 61 61 61 LYS LYS A . n C 2 62 VAL 62 62 62 VAL VAL A . n C 2 63 GLU 63 63 63 GLU GLU A . n C 2 64 VAL 64 64 64 VAL VAL A . n C 2 65 PRO 65 65 65 PRO PRO A . n C 2 66 LYS 66 66 66 LYS LYS A . n C 2 67 VAL 67 67 67 VAL VAL A . n C 2 68 ALA 68 68 68 ALA ALA A . n C 2 69 THR 69 69 69 THR THR A . n C 2 70 GLN 70 70 70 GLN GLN A . n C 2 71 THR 71 71 71 THR THR A . n C 2 72 VAL 72 72 72 VAL VAL A . n C 2 73 GLY 73 73 73 GLY GLY A . n C 2 74 GLY 74 74 74 GLY GLY A . n C 2 75 VAL 75 75 75 VAL VAL A . n C 2 76 GLU 76 76 76 GLU GLU A . n C 2 77 LEU 77 77 77 LEU LEU A . n C 2 78 PRO 78 78 78 PRO PRO A . n C 2 79 VAL 79 79 79 VAL VAL A . n C 2 80 ALA 80 80 80 ALA ALA A . n C 2 81 ALA 81 81 81 ALA ALA A . n C 2 82 TRP 82 82 82 TRP TRP A . n C 2 83 ARG 83 83 83 ARG ARG A . n C 2 84 SER 84 84 84 SER SER A . n C 2 85 TYR 85 85 85 TYR TYR A . n C 2 86 LEU 86 86 86 LEU LEU A . n C 2 87 ASN 87 87 87 ASN ASN A . n C 2 88 MET 88 88 88 MET MET A . n C 2 89 GLU 89 89 89 GLU GLU A . n C 2 90 LEU 90 90 90 LEU LEU A . n C 2 91 THR 91 91 91 THR THR A . n C 2 92 ILE 92 92 92 ILE ILE A . n C 2 93 PRO 93 93 93 PRO PRO A . n C 2 94 ILE 94 94 94 ILE ILE A . n C 2 95 PHE 95 95 95 PHE PHE A . n C 2 96 ALA 96 96 96 ALA ALA A . n C 2 97 THR 97 97 97 THR THR A . n C 2 98 ASN 98 98 98 ASN ASN A . n C 2 99 SER 99 99 99 SER SER A . n C 2 100 ASP 100 100 100 ASP ASP A . n C 2 101 CYS 101 101 101 CYS CYS A . n C 2 102 GLU 102 102 102 GLU GLU A . n C 2 103 LEU 103 103 103 LEU LEU A . n C 2 104 ILE 104 104 104 ILE ILE A . n C 2 105 VAL 105 105 105 VAL VAL A . n C 2 106 LYS 106 106 106 LYS LYS A . n C 2 107 ALA 107 107 107 ALA ALA A . n C 2 108 MET 108 108 108 MET MET A . n C 2 109 GLN 109 109 109 GLN GLN A . n C 2 110 GLY 110 110 110 GLY GLY A . n C 2 111 LEU 111 111 111 LEU LEU A . n C 2 112 LEU 112 112 112 LEU LEU A . n C 2 113 LYS 113 113 113 LYS LYS A . n C 2 114 ASP 114 114 114 ASP ASP A . n C 2 115 GLY 115 115 115 GLY GLY A . n C 2 116 ASN 116 116 116 ASN ASN A . n C 2 117 PRO 117 117 117 PRO PRO A . n C 2 118 ILE 118 118 118 ILE ILE A . n C 2 119 PRO 119 119 119 PRO PRO A . n C 2 120 SER 120 120 120 SER SER A . n C 2 121 ALA 121 121 121 ALA ALA A . n C 2 122 ILE 122 122 122 ILE ILE A . n C 2 123 ALA 123 123 123 ALA ALA A . n C 2 124 ALA 124 124 124 ALA ALA A . n C 2 125 ASN 125 125 125 ASN ASN A . n C 2 126 SER 126 126 126 SER SER A . n C 2 127 GLY 127 127 127 GLY GLY A . n C 2 128 ILE 128 128 128 ILE ILE A . n C 2 129 TYR 129 129 129 TYR TYR A . n D 2 1 ALA 1 1 1 ALA ALA B . n D 2 2 SER 2 2 2 SER SER B . n D 2 3 ASN 3 3 3 ASN ASN B . n D 2 4 PHE 4 4 4 PHE PHE B . n D 2 5 THR 5 5 5 THR THR B . n D 2 6 GLN 6 6 6 GLN GLN B . n D 2 7 PHE 7 7 7 PHE PHE B . n D 2 8 VAL 8 8 8 VAL VAL B . n D 2 9 LEU 9 9 9 LEU LEU B . n D 2 10 VAL 10 10 10 VAL VAL B . n D 2 11 ASP 11 11 11 ASP ASP B . n D 2 12 ASN 12 12 12 ASN ASN B . n D 2 13 GLY 13 13 13 GLY GLY B . n D 2 14 GLY 14 14 14 GLY GLY B . n D 2 15 THR 15 15 15 THR THR B . n D 2 16 GLY 16 16 16 GLY GLY B . n D 2 17 ASP 17 17 17 ASP ASP B . n D 2 18 VAL 18 18 18 VAL VAL B . n D 2 19 THR 19 19 19 THR THR B . n D 2 20 VAL 20 20 20 VAL VAL B . n D 2 21 ALA 21 21 21 ALA ALA B . n D 2 22 PRO 22 22 22 PRO PRO B . n D 2 23 SER 23 23 23 SER SER B . n D 2 24 ASN 24 24 24 ASN ASN B . n D 2 25 PHE 25 25 25 PHE PHE B . n D 2 26 ALA 26 26 26 ALA ALA B . n D 2 27 ASN 27 27 27 ASN ASN B . n D 2 28 GLY 28 28 28 GLY GLY B . n D 2 29 VAL 29 29 29 VAL VAL B . n D 2 30 ALA 30 30 30 ALA ALA B . n D 2 31 GLU 31 31 31 GLU GLU B . n D 2 32 TRP 32 32 32 TRP TRP B . n D 2 33 ILE 33 33 33 ILE ILE B . n D 2 34 SER 34 34 34 SER SER B . n D 2 35 SER 35 35 35 SER SER B . n D 2 36 ASN 36 36 36 ASN ASN B . n D 2 37 SER 37 37 37 SER SER B . n D 2 38 ARG 38 38 38 ARG ARG B . n D 2 39 SER 39 39 39 SER SER B . n D 2 40 GLN 40 40 40 GLN GLN B . n D 2 41 ALA 41 41 41 ALA ALA B . n D 2 42 TYR 42 42 42 TYR TYR B . n D 2 43 LYS 43 43 43 LYS LYS B . n D 2 44 VAL 44 44 44 VAL VAL B . n D 2 45 THR 45 45 45 THR THR B . n D 2 46 CYS 46 46 46 CYS CYS B . n D 2 47 SER 47 47 47 SER SER B . n D 2 48 VAL 48 48 48 VAL VAL B . n D 2 49 ARG 49 49 49 ARG ARG B . n D 2 50 GLN 50 50 50 GLN GLN B . n D 2 51 SER 51 51 51 SER SER B . n D 2 52 SER 52 52 52 SER SER B . n D 2 53 ALA 53 53 53 ALA ALA B . n D 2 54 GLN 54 54 54 GLN GLN B . n D 2 55 ASN 55 55 55 ASN ASN B . n D 2 56 ARG 56 56 56 ARG ARG B . n D 2 57 LYS 57 57 57 LYS LYS B . n D 2 58 TYR 58 58 58 TYR TYR B . n D 2 59 THR 59 59 59 THR THR B . n D 2 60 ILE 60 60 60 ILE ILE B . n D 2 61 LYS 61 61 61 LYS LYS B . n D 2 62 VAL 62 62 62 VAL VAL B . n D 2 63 GLU 63 63 63 GLU GLU B . n D 2 64 VAL 64 64 64 VAL VAL B . n D 2 65 PRO 65 65 65 PRO PRO B . n D 2 66 LYS 66 66 66 LYS LYS B . n D 2 67 VAL 67 67 67 VAL VAL B . n D 2 68 ALA 68 68 68 ALA ALA B . n D 2 69 THR 69 69 69 THR THR B . n D 2 70 GLN 70 70 70 GLN GLN B . n D 2 71 THR 71 71 71 THR THR B . n D 2 72 VAL 72 72 72 VAL VAL B . n D 2 73 GLY 73 73 73 GLY GLY B . n D 2 74 GLY 74 74 74 GLY GLY B . n D 2 75 VAL 75 75 75 VAL VAL B . n D 2 76 GLU 76 76 76 GLU GLU B . n D 2 77 LEU 77 77 77 LEU LEU B . n D 2 78 PRO 78 78 78 PRO PRO B . n D 2 79 VAL 79 79 79 VAL VAL B . n D 2 80 ALA 80 80 80 ALA ALA B . n D 2 81 ALA 81 81 81 ALA ALA B . n D 2 82 TRP 82 82 82 TRP TRP B . n D 2 83 ARG 83 83 83 ARG ARG B . n D 2 84 SER 84 84 84 SER SER B . n D 2 85 TYR 85 85 85 TYR TYR B . n D 2 86 LEU 86 86 86 LEU LEU B . n D 2 87 ASN 87 87 87 ASN ASN B . n D 2 88 MET 88 88 88 MET MET B . n D 2 89 GLU 89 89 89 GLU GLU B . n D 2 90 LEU 90 90 90 LEU LEU B . n D 2 91 THR 91 91 91 THR THR B . n D 2 92 ILE 92 92 92 ILE ILE B . n D 2 93 PRO 93 93 93 PRO PRO B . n D 2 94 ILE 94 94 94 ILE ILE B . n D 2 95 PHE 95 95 95 PHE PHE B . n D 2 96 ALA 96 96 96 ALA ALA B . n D 2 97 THR 97 97 97 THR THR B . n D 2 98 ASN 98 98 98 ASN ASN B . n D 2 99 SER 99 99 99 SER SER B . n D 2 100 ASP 100 100 100 ASP ASP B . n D 2 101 CYS 101 101 101 CYS CYS B . n D 2 102 GLU 102 102 102 GLU GLU B . n D 2 103 LEU 103 103 103 LEU LEU B . n D 2 104 ILE 104 104 104 ILE ILE B . n D 2 105 VAL 105 105 105 VAL VAL B . n D 2 106 LYS 106 106 106 LYS LYS B . n D 2 107 ALA 107 107 107 ALA ALA B . n D 2 108 MET 108 108 108 MET MET B . n D 2 109 GLN 109 109 109 GLN GLN B . n D 2 110 GLY 110 110 110 GLY GLY B . n D 2 111 LEU 111 111 111 LEU LEU B . n D 2 112 LEU 112 112 112 LEU LEU B . n D 2 113 LYS 113 113 113 LYS LYS B . n D 2 114 ASP 114 114 114 ASP ASP B . n D 2 115 GLY 115 115 115 GLY GLY B . n D 2 116 ASN 116 116 116 ASN ASN B . n D 2 117 PRO 117 117 117 PRO PRO B . n D 2 118 ILE 118 118 118 ILE ILE B . n D 2 119 PRO 119 119 119 PRO PRO B . n D 2 120 SER 120 120 120 SER SER B . n D 2 121 ALA 121 121 121 ALA ALA B . n D 2 122 ILE 122 122 122 ILE ILE B . n D 2 123 ALA 123 123 123 ALA ALA B . n D 2 124 ALA 124 124 124 ALA ALA B . n D 2 125 ASN 125 125 125 ASN ASN B . n D 2 126 SER 126 126 126 SER SER B . n D 2 127 GLY 127 127 127 GLY GLY B . n D 2 128 ILE 128 128 128 ILE ILE B . n D 2 129 TYR 129 129 129 TYR TYR B . n E 2 1 ALA 1 1 1 ALA ALA C . n E 2 2 SER 2 2 2 SER SER C . n E 2 3 ASN 3 3 3 ASN ASN C . n E 2 4 PHE 4 4 4 PHE PHE C . n E 2 5 THR 5 5 5 THR THR C . n E 2 6 GLN 6 6 6 GLN GLN C . n E 2 7 PHE 7 7 7 PHE PHE C . n E 2 8 VAL 8 8 8 VAL VAL C . n E 2 9 LEU 9 9 9 LEU LEU C . n E 2 10 VAL 10 10 10 VAL VAL C . n E 2 11 ASP 11 11 11 ASP ASP C . n E 2 12 ASN 12 12 12 ASN ASN C . n E 2 13 GLY 13 13 13 GLY GLY C . n E 2 14 GLY 14 14 14 GLY GLY C . n E 2 15 THR 15 15 15 THR THR C . n E 2 16 GLY 16 16 16 GLY GLY C . n E 2 17 ASP 17 17 17 ASP ASP C . n E 2 18 VAL 18 18 18 VAL VAL C . n E 2 19 THR 19 19 19 THR THR C . n E 2 20 VAL 20 20 20 VAL VAL C . n E 2 21 ALA 21 21 21 ALA ALA C . n E 2 22 PRO 22 22 22 PRO PRO C . n E 2 23 SER 23 23 23 SER SER C . n E 2 24 ASN 24 24 24 ASN ASN C . n E 2 25 PHE 25 25 25 PHE PHE C . n E 2 26 ALA 26 26 26 ALA ALA C . n E 2 27 ASN 27 27 27 ASN ASN C . n E 2 28 GLY 28 28 28 GLY GLY C . n E 2 29 VAL 29 29 29 VAL VAL C . n E 2 30 ALA 30 30 30 ALA ALA C . n E 2 31 GLU 31 31 31 GLU GLU C . n E 2 32 TRP 32 32 32 TRP TRP C . n E 2 33 ILE 33 33 33 ILE ILE C . n E 2 34 SER 34 34 34 SER SER C . n E 2 35 SER 35 35 35 SER SER C . n E 2 36 ASN 36 36 36 ASN ASN C . n E 2 37 SER 37 37 37 SER SER C . n E 2 38 ARG 38 38 38 ARG ARG C . n E 2 39 SER 39 39 39 SER SER C . n E 2 40 GLN 40 40 40 GLN GLN C . n E 2 41 ALA 41 41 41 ALA ALA C . n E 2 42 TYR 42 42 42 TYR TYR C . n E 2 43 LYS 43 43 43 LYS LYS C . n E 2 44 VAL 44 44 44 VAL VAL C . n E 2 45 THR 45 45 45 THR THR C . n E 2 46 CYS 46 46 46 CYS CYS C . n E 2 47 SER 47 47 47 SER SER C . n E 2 48 VAL 48 48 48 VAL VAL C . n E 2 49 ARG 49 49 49 ARG ARG C . n E 2 50 GLN 50 50 50 GLN GLN C . n E 2 51 SER 51 51 51 SER SER C . n E 2 52 SER 52 52 52 SER SER C . n E 2 53 ALA 53 53 53 ALA ALA C . n E 2 54 GLN 54 54 54 GLN GLN C . n E 2 55 ASN 55 55 55 ASN ASN C . n E 2 56 ARG 56 56 56 ARG ARG C . n E 2 57 LYS 57 57 57 LYS LYS C . n E 2 58 TYR 58 58 58 TYR TYR C . n E 2 59 THR 59 59 59 THR THR C . n E 2 60 ILE 60 60 60 ILE ILE C . n E 2 61 LYS 61 61 61 LYS LYS C . n E 2 62 VAL 62 62 62 VAL VAL C . n E 2 63 GLU 63 63 63 GLU GLU C . n E 2 64 VAL 64 64 64 VAL VAL C . n E 2 65 PRO 65 65 65 PRO PRO C . n E 2 66 LYS 66 66 66 LYS LYS C . n E 2 67 VAL 67 67 67 VAL VAL C . n E 2 68 ALA 68 68 68 ALA ALA C . n E 2 69 THR 69 69 69 THR THR C . n E 2 70 GLN 70 70 70 GLN GLN C . n E 2 71 THR 71 71 71 THR THR C . n E 2 72 VAL 72 72 72 VAL VAL C . n E 2 73 GLY 73 73 73 GLY GLY C . n E 2 74 GLY 74 74 74 GLY GLY C . n E 2 75 VAL 75 75 75 VAL VAL C . n E 2 76 GLU 76 76 76 GLU GLU C . n E 2 77 LEU 77 77 77 LEU LEU C . n E 2 78 PRO 78 78 78 PRO PRO C . n E 2 79 VAL 79 79 79 VAL VAL C . n E 2 80 ALA 80 80 80 ALA ALA C . n E 2 81 ALA 81 81 81 ALA ALA C . n E 2 82 TRP 82 82 82 TRP TRP C . n E 2 83 ARG 83 83 83 ARG ARG C . n E 2 84 SER 84 84 84 SER SER C . n E 2 85 TYR 85 85 85 TYR TYR C . n E 2 86 LEU 86 86 86 LEU LEU C . n E 2 87 ASN 87 87 87 ASN ASN C . n E 2 88 MET 88 88 88 MET MET C . n E 2 89 GLU 89 89 89 GLU GLU C . n E 2 90 LEU 90 90 90 LEU LEU C . n E 2 91 THR 91 91 91 THR THR C . n E 2 92 ILE 92 92 92 ILE ILE C . n E 2 93 PRO 93 93 93 PRO PRO C . n E 2 94 ILE 94 94 94 ILE ILE C . n E 2 95 PHE 95 95 95 PHE PHE C . n E 2 96 ALA 96 96 96 ALA ALA C . n E 2 97 THR 97 97 97 THR THR C . n E 2 98 ASN 98 98 98 ASN ASN C . n E 2 99 SER 99 99 99 SER SER C . n E 2 100 ASP 100 100 100 ASP ASP C . n E 2 101 CYS 101 101 101 CYS CYS C . n E 2 102 GLU 102 102 102 GLU GLU C . n E 2 103 LEU 103 103 103 LEU LEU C . n E 2 104 ILE 104 104 104 ILE ILE C . n E 2 105 VAL 105 105 105 VAL VAL C . n E 2 106 LYS 106 106 106 LYS LYS C . n E 2 107 ALA 107 107 107 ALA ALA C . n E 2 108 MET 108 108 108 MET MET C . n E 2 109 GLN 109 109 109 GLN GLN C . n E 2 110 GLY 110 110 110 GLY GLY C . n E 2 111 LEU 111 111 111 LEU LEU C . n E 2 112 LEU 112 112 112 LEU LEU C . n E 2 113 LYS 113 113 113 LYS LYS C . n E 2 114 ASP 114 114 114 ASP ASP C . n E 2 115 GLY 115 115 115 GLY GLY C . n E 2 116 ASN 116 116 116 ASN ASN C . n E 2 117 PRO 117 117 117 PRO PRO C . n E 2 118 ILE 118 118 118 ILE ILE C . n E 2 119 PRO 119 119 119 PRO PRO C . n E 2 120 SER 120 120 120 SER SER C . n E 2 121 ALA 121 121 121 ALA ALA C . n E 2 122 ILE 122 122 122 ILE ILE C . n E 2 123 ALA 123 123 123 ALA ALA C . n E 2 124 ALA 124 124 124 ALA ALA C . n E 2 125 ASN 125 125 125 ASN ASN C . n E 2 126 SER 126 126 126 SER SER C . n E 2 127 GLY 127 127 127 GLY GLY C . n E 2 128 ILE 128 128 128 ILE ILE C . n E 2 129 TYR 129 129 129 TYR TYR C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 HOH 1 301 301 HOH HOH R . F 3 HOH 2 302 302 HOH HOH R . G 3 HOH 1 130 1 HOH HOH A . G 3 HOH 2 131 2 HOH HOH A . G 3 HOH 3 132 3 HOH HOH A . G 3 HOH 4 133 4 HOH HOH A . G 3 HOH 5 134 5 HOH HOH A . G 3 HOH 6 135 6 HOH HOH A . G 3 HOH 7 136 7 HOH HOH A . G 3 HOH 8 137 8 HOH HOH A . G 3 HOH 9 138 9 HOH HOH A . G 3 HOH 10 139 10 HOH HOH A . G 3 HOH 11 140 11 HOH HOH A . G 3 HOH 12 141 12 HOH HOH A . G 3 HOH 13 142 13 HOH HOH A . G 3 HOH 14 143 14 HOH HOH A . G 3 HOH 15 144 15 HOH HOH A . G 3 HOH 16 145 16 HOH HOH A . G 3 HOH 17 146 17 HOH HOH A . G 3 HOH 18 147 18 HOH HOH A . G 3 HOH 19 148 19 HOH HOH A . G 3 HOH 20 149 20 HOH HOH A . G 3 HOH 21 150 21 HOH HOH A . G 3 HOH 22 151 22 HOH HOH A . G 3 HOH 23 152 23 HOH HOH A . G 3 HOH 24 153 24 HOH HOH A . G 3 HOH 25 154 25 HOH HOH A . G 3 HOH 26 155 26 HOH HOH A . G 3 HOH 27 156 27 HOH HOH A . G 3 HOH 28 157 28 HOH HOH A . G 3 HOH 29 158 29 HOH HOH A . G 3 HOH 30 159 30 HOH HOH A . H 3 HOH 1 130 101 HOH HOH B . H 3 HOH 2 131 102 HOH HOH B . H 3 HOH 3 132 103 HOH HOH B . H 3 HOH 4 133 104 HOH HOH B . H 3 HOH 5 134 105 HOH HOH B . H 3 HOH 6 135 106 HOH HOH B . H 3 HOH 7 136 107 HOH HOH B . H 3 HOH 8 137 108 HOH HOH B . H 3 HOH 9 138 109 HOH HOH B . H 3 HOH 10 139 110 HOH HOH B . H 3 HOH 11 140 111 HOH HOH B . H 3 HOH 12 141 112 HOH HOH B . H 3 HOH 13 142 113 HOH HOH B . H 3 HOH 14 143 114 HOH HOH B . H 3 HOH 15 144 115 HOH HOH B . H 3 HOH 16 145 116 HOH HOH B . H 3 HOH 17 146 117 HOH HOH B . H 3 HOH 18 147 118 HOH HOH B . H 3 HOH 19 148 119 HOH HOH B . H 3 HOH 20 149 120 HOH HOH B . H 3 HOH 21 150 121 HOH HOH B . H 3 HOH 22 151 122 HOH HOH B . H 3 HOH 23 152 123 HOH HOH B . H 3 HOH 24 153 124 HOH HOH B . H 3 HOH 25 154 125 HOH HOH B . H 3 HOH 26 155 126 HOH HOH B . H 3 HOH 27 156 127 HOH HOH B . H 3 HOH 28 157 128 HOH HOH B . H 3 HOH 29 158 129 HOH HOH B . H 3 HOH 30 159 130 HOH HOH B . H 3 HOH 31 160 131 HOH HOH B . H 3 HOH 32 161 132 HOH HOH B . H 3 HOH 33 162 133 HOH HOH B . H 3 HOH 34 163 134 HOH HOH B . H 3 HOH 35 164 135 HOH HOH B . H 3 HOH 36 165 136 HOH HOH B . H 3 HOH 37 166 137 HOH HOH B . H 3 HOH 38 167 138 HOH HOH B . H 3 HOH 39 168 139 HOH HOH B . H 3 HOH 40 169 140 HOH HOH B . H 3 HOH 41 170 141 HOH HOH B . H 3 HOH 42 171 142 HOH HOH B . H 3 HOH 43 172 143 HOH HOH B . I 3 HOH 1 201 201 HOH HOH C . I 3 HOH 2 202 202 HOH HOH C . I 3 HOH 3 203 203 HOH HOH C . I 3 HOH 4 204 204 HOH HOH C . I 3 HOH 5 205 205 HOH HOH C . I 3 HOH 6 206 206 HOH HOH C . I 3 HOH 7 207 207 HOH HOH C . I 3 HOH 8 208 208 HOH HOH C . I 3 HOH 9 209 209 HOH HOH C . I 3 HOH 10 210 210 HOH HOH C . I 3 HOH 11 211 211 HOH HOH C . I 3 HOH 12 212 212 HOH HOH C . I 3 HOH 13 213 213 HOH HOH C . I 3 HOH 14 214 214 HOH HOH C . I 3 HOH 15 215 215 HOH HOH C . I 3 HOH 16 216 216 HOH HOH C . I 3 HOH 17 217 217 HOH HOH C . I 3 HOH 18 218 218 HOH HOH C . I 3 HOH 19 219 219 HOH HOH C . I 3 HOH 20 220 220 HOH HOH C . I 3 HOH 21 221 221 HOH HOH C . I 3 HOH 22 222 222 HOH HOH C . I 3 HOH 23 223 223 HOH HOH C . I 3 HOH 24 224 224 HOH HOH C . I 3 HOH 25 225 225 HOH HOH C . I 3 HOH 26 226 226 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 300-MERIC 300 2 'icosahedral asymmetric unit' ? pentameric 5 3 'icosahedral pentamer' ? 25-meric 25 4 'icosahedral 23 hexamer' ? 30-meric 30 5 'icosahedral asymmetric unit, std point frame' ? pentameric 5 6 'crystal asymmetric unit, crystal frame' ? 50-meric 50 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 '(1-5)' A,B,C,D,E,F,G,H,I 4 '(1,2,6,10,23,24)' A,B,C,D,E,F,G,H,I 5 P A,B,C,D,E,F,G,H,I 6 '(X0)(1-10)' A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.50000000 -0.86602540 0.00000079 0.00000 0.30901699 -0.17841019 0.93417252 0.00000 -0.80901699 0.46708650 0.35682166 0.00000 X0 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000000 -0.86602540 0.00000079 0.00000 0.64549670 0.37267830 0.66666701 0.00000 -0.57735086 -0.33333299 0.74535569 0.00000 3 'point symmetry operation' ? ? -0.30901699 -0.75576184 -0.57734958 0.00000 0.17841019 -0.64234953 0.74535688 0.00000 -0.93417252 0.12732289 0.33333254 0.00000 4 'point symmetry operation' ? ? -0.30901699 0.17841019 -0.93417252 0.00000 -0.75576184 -0.64234953 0.12732289 0.00000 -0.57734958 0.74535688 0.33333254 0.00000 5 'point symmetry operation' ? ? 0.50000000 0.64549670 -0.57735086 0.00000 -0.86602540 0.37267830 -0.33333299 0.00000 0.00000079 0.66666701 0.74535569 0.00000 6 'point symmetry operation' ? ? 0.30901699 -0.75576184 -0.57734958 0.00000 -0.75576184 -0.56366040 0.33333317 0.00000 -0.57734958 0.33333317 -0.74535660 0.00000 7 'point symmetry operation' ? ? 0.00000000 -0.35682294 -0.93417203 0.00000 -0.93417203 0.33333401 -0.12732261 0.00000 0.35682294 0.87267739 -0.33333401 0.00000 8 'point symmetry operation' ? ? 0.30901699 0.17841019 -0.93417252 0.00000 -0.17841019 0.97568389 0.12732142 0.00000 0.93417252 0.12732142 0.33333310 0.00000 9 'point symmetry operation' ? ? 0.80901699 0.11026356 -0.57735037 0.00000 0.46708650 0.47568355 0.74535586 0.00000 0.35682166 -0.87267813 0.33333345 0.00000 10 'point symmetry operation' ? ? 0.80901699 -0.46708650 -0.35682166 0.00000 0.11026356 -0.47568355 0.87267813 0.00000 -0.57735037 -0.74535586 -0.33333345 0.00000 11 'point symmetry operation' ? ? -0.80901699 -0.11026356 0.57735037 0.00000 -0.11026356 -0.93633960 -0.33333180 0.00000 0.57735037 -0.33333180 0.74535660 0.00000 12 'point symmetry operation' ? ? -0.80901699 0.46708650 0.35682166 0.00000 -0.46708650 -0.14235192 -0.87267756 0.00000 -0.35682166 -0.87267756 0.33333492 0.00000 13 'point symmetry operation' ? ? -0.30901699 0.75576184 0.57734958 0.00000 0.17841019 0.64234953 -0.74535688 0.00000 -0.93417252 -0.12732289 -0.33333254 0.00000 14 'point symmetry operation' ? ? 0.00000000 0.35682294 0.93417203 0.00000 0.93417203 0.33333401 -0.12732261 0.00000 -0.35682294 0.87267739 -0.33333401 0.00000 15 'point symmetry operation' ? ? -0.30901699 -0.17841019 0.93417252 0.00000 0.75576184 -0.64234953 0.12732289 0.00000 0.57734958 0.74535688 0.33333254 0.00000 16 'point symmetry operation' ? ? -0.50000000 0.86602540 -0.00000079 0.00000 0.86602540 0.50000000 -0.00000137 0.00000 -0.00000079 -0.00000137 -1.00000000 0.00000 17 'point symmetry operation' ? ? 0.30901699 0.75576184 0.57734958 0.00000 0.75576184 -0.56366040 0.33333317 0.00000 0.57734958 0.33333317 -0.74535660 0.00000 18 'point symmetry operation' ? ? 0.30901699 -0.17841019 0.93417252 0.00000 -0.17841019 -0.97568389 -0.12732142 0.00000 0.93417252 -0.12732142 -0.33333310 0.00000 19 'point symmetry operation' ? ? -0.50000000 -0.64549670 0.57735086 0.00000 -0.64549670 -0.16666802 -0.74535614 0.00000 0.57735086 -0.74535614 -0.33333198 0.00000 20 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 0.74535478 -0.66666802 0.00000 0.00000000 -0.66666802 -0.74535478 0.00000 21 'point symmetry operation' ? ? 0.00000000 -0.35682294 -0.93417203 0.00000 0.93417203 -0.33333401 0.12732261 0.00000 -0.35682294 -0.87267739 0.33333401 0.00000 22 'point symmetry operation' ? ? 0.30901699 0.17841019 -0.93417252 0.00000 0.17841019 -0.97568389 -0.12732142 0.00000 -0.93417252 -0.12732142 -0.33333310 0.00000 23 'point symmetry operation' ? ? 0.80901699 0.11026356 -0.57735037 0.00000 -0.46708650 -0.47568355 -0.74535586 0.00000 -0.35682166 0.87267813 -0.33333345 0.00000 24 'point symmetry operation' ? ? 0.80901699 -0.46708650 -0.35682166 0.00000 -0.11026356 0.47568355 -0.87267813 0.00000 0.57735037 0.74535586 0.33333345 0.00000 25 'point symmetry operation' ? ? 0.30901699 -0.75576184 -0.57734958 0.00000 0.75576184 0.56366040 -0.33333317 0.00000 0.57734958 -0.33333317 0.74535660 0.00000 26 'point symmetry operation' ? ? 0.80901699 -0.11026356 0.57735037 0.00000 0.46708650 -0.47568355 -0.74535586 0.00000 0.35682166 0.87267813 -0.33333345 0.00000 27 'point symmetry operation' ? ? 0.00000000 -0.93417203 0.35682294 0.00000 0.35682294 -0.33333401 -0.87267739 0.00000 0.93417203 0.12732261 0.33333401 0.00000 28 'point symmetry operation' ? ? -0.80901699 -0.46708650 -0.35682166 0.00000 0.46708650 -0.14235192 -0.87267756 0.00000 0.35682166 -0.87267756 0.33333492 0.00000 29 'point symmetry operation' ? ? -0.50000000 0.64549670 -0.57735086 0.00000 0.64549670 -0.16666802 -0.74535614 0.00000 -0.57735086 -0.74535614 -0.33333198 0.00000 30 'point symmetry operation' ? ? 0.50000000 0.86602540 -0.00000079 0.00000 0.64549670 -0.37267830 -0.66666701 0.00000 -0.57735086 0.33333299 -0.74535569 0.00000 31 'point symmetry operation' ? ? -0.50000000 0.64549670 -0.57735086 0.00000 -0.64549670 0.16666802 0.74535614 0.00000 0.57735086 0.74535614 0.33333198 0.00000 32 'point symmetry operation' ? ? 0.50000000 0.86602540 -0.00000079 0.00000 -0.64549670 0.37267830 0.66666701 0.00000 0.57735086 -0.33333299 0.74535569 0.00000 33 'point symmetry operation' ? ? 0.80901699 -0.11026356 0.57735037 0.00000 -0.46708650 0.47568355 0.74535586 0.00000 -0.35682166 -0.87267813 0.33333345 0.00000 34 'point symmetry operation' ? ? 0.00000000 -0.93417203 0.35682294 0.00000 -0.35682294 0.33333401 0.87267739 0.00000 -0.93417203 -0.12732261 -0.33333401 0.00000 35 'point symmetry operation' ? ? -0.80901699 -0.46708650 -0.35682166 0.00000 -0.46708650 0.14235192 0.87267756 0.00000 -0.35682166 0.87267756 -0.33333492 0.00000 36 'point symmetry operation' ? ? -0.30901699 -0.17841019 0.93417252 0.00000 -0.75576184 0.64234953 -0.12732289 0.00000 -0.57734958 -0.74535688 -0.33333254 0.00000 37 'point symmetry operation' ? ? -0.80901699 -0.11026356 0.57735037 0.00000 0.11026356 0.93633960 0.33333180 0.00000 -0.57735037 0.33333180 -0.74535660 0.00000 38 'point symmetry operation' ? ? -0.80901699 0.46708650 0.35682166 0.00000 0.46708650 0.14235192 0.87267756 0.00000 0.35682166 0.87267756 -0.33333492 0.00000 39 'point symmetry operation' ? ? -0.30901699 0.75576184 0.57734958 0.00000 -0.17841019 -0.64234953 0.74535688 0.00000 0.93417252 0.12732289 0.33333254 0.00000 40 'point symmetry operation' ? ? 0.00000000 0.35682294 0.93417203 0.00000 -0.93417203 -0.33333401 0.12732261 0.00000 0.35682294 -0.87267739 0.33333401 0.00000 41 'point symmetry operation' ? ? 0.00000000 0.93417203 -0.35682294 0.00000 -0.35682294 -0.33333401 -0.87267739 0.00000 -0.93417203 0.12732261 0.33333401 0.00000 42 'point symmetry operation' ? ? 0.80901699 0.46708650 0.35682166 0.00000 0.11026356 0.47568355 -0.87267813 0.00000 -0.57735037 0.74535586 0.33333345 0.00000 43 'point symmetry operation' ? ? 0.50000000 -0.64549670 0.57735086 0.00000 0.86602540 0.37267830 -0.33333299 0.00000 -0.00000079 0.66666701 0.74535569 0.00000 44 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000079 0.00000 0.86602540 -0.50000000 0.00000137 0.00000 -0.00000079 0.00000137 1.00000000 0.00000 45 'point symmetry operation' ? ? -0.80901699 0.11026356 -0.57735037 0.00000 0.11026356 -0.93633960 -0.33333180 0.00000 -0.57735037 -0.33333180 0.74535660 0.00000 46 'point symmetry operation' ? ? -0.50000000 -0.64549670 0.57735086 0.00000 0.64549670 0.16666802 0.74535614 0.00000 -0.57735086 0.74535614 0.33333198 0.00000 47 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -0.74535478 0.66666802 0.00000 0.00000000 0.66666802 0.74535478 0.00000 48 'point symmetry operation' ? ? -0.50000000 0.86602540 -0.00000079 0.00000 -0.86602540 -0.50000000 0.00000137 0.00000 0.00000079 0.00000137 1.00000000 0.00000 49 'point symmetry operation' ? ? 0.30901699 0.75576184 0.57734958 0.00000 -0.75576184 0.56366040 -0.33333317 0.00000 -0.57734958 -0.33333317 0.74535660 0.00000 50 'point symmetry operation' ? ? 0.30901699 -0.17841019 0.93417252 0.00000 0.17841019 0.97568389 0.12732142 0.00000 -0.93417252 0.12732142 0.33333310 0.00000 51 'point symmetry operation' ? ? -0.30901699 -0.75576184 -0.57734958 0.00000 -0.17841019 0.64234953 -0.74535688 0.00000 0.93417252 -0.12732289 -0.33333254 0.00000 52 'point symmetry operation' ? ? -0.30901699 0.17841019 -0.93417252 0.00000 0.75576184 0.64234953 -0.12732289 0.00000 0.57734958 -0.74535688 -0.33333254 0.00000 53 'point symmetry operation' ? ? 0.50000000 0.64549670 -0.57735086 0.00000 0.86602540 -0.37267830 0.33333299 0.00000 -0.00000079 -0.66666701 -0.74535569 0.00000 54 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 55 'point symmetry operation' ? ? 0.50000000 -0.86602540 0.00000079 0.00000 -0.64549670 -0.37267830 -0.66666701 0.00000 0.57735086 0.33333299 -0.74535569 0.00000 56 'point symmetry operation' ? ? 0.80901699 0.46708650 0.35682166 0.00000 -0.11026356 -0.47568355 0.87267813 0.00000 0.57735037 -0.74535586 -0.33333345 0.00000 57 'point symmetry operation' ? ? 0.50000000 -0.64549670 0.57735086 0.00000 -0.86602540 -0.37267830 0.33333299 0.00000 0.00000079 -0.66666701 -0.74535569 0.00000 58 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000079 0.00000 -0.86602540 0.50000000 -0.00000137 0.00000 0.00000079 -0.00000137 -1.00000000 0.00000 59 'point symmetry operation' ? ? -0.80901699 0.11026356 -0.57735037 0.00000 -0.11026356 0.93633960 0.33333180 0.00000 0.57735037 0.33333180 -0.74535660 0.00000 60 'point symmetry operation' ? ? 0.00000000 0.93417203 -0.35682294 0.00000 0.35682294 0.33333401 0.87267739 0.00000 0.93417203 -0.12732261 -0.33333401 0.00000 # _pdbx_point_symmetry.entry_id 5MSF _pdbx_point_symmetry.Schoenflies_symbol I _pdbx_point_symmetry.H-M_notation 532 _pdbx_point_symmetry.circular_symmetry ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-11-11 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_oper_list.name' 4 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 4 'Structure model' '_pdbx_struct_oper_list.type' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CCP4 'model building' . ? 1 X-PLOR refinement 3.860 ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 CCP4 phasing . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 S _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 15 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 S _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 16 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.710 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation 0.103 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" S A 5 ? ? P S G 6 ? ? "O5'" S G 6 ? ? 120.04 104.00 16.04 1.90 Y 2 1 OP1 S C 15 ? ? P S C 15 ? ? OP2 S C 15 ? ? 145.03 119.60 25.43 1.50 N 3 1 "O5'" S C 15 ? ? P S C 15 ? ? OP1 S C 15 ? ? 86.86 105.70 -18.84 0.90 N 4 1 "C3'" S C 15 ? ? "O3'" S C 15 ? ? P S G 16 ? ? 102.68 119.70 -17.02 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 167.10 120.35 2 1 SER A 35 ? ? -69.35 64.55 3 1 SER A 52 ? ? -111.79 -169.66 4 1 SER B 2 ? ? 145.99 90.16 5 1 ASN B 24 ? ? -170.87 147.40 6 1 PHE B 25 ? ? -140.31 24.04 7 1 SER C 2 ? ? -170.76 131.24 8 1 THR C 15 ? ? -106.70 -86.56 9 1 ASN C 36 ? ? 78.05 -177.87 10 1 SER C 37 ? ? -31.28 117.12 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 S _pdbx_validate_polymer_linkage.auth_comp_id_1 A _pdbx_validate_polymer_linkage.auth_seq_id_1 14 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 S _pdbx_validate_polymer_linkage.auth_comp_id_2 C _pdbx_validate_polymer_linkage.auth_seq_id_2 15 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 2.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 S C 2 ? P ? B C 2 P 2 1 Y 1 S C 2 ? OP1 ? B C 2 OP1 3 1 Y 1 S C 2 ? OP2 ? B C 2 OP2 4 1 Y 1 S G 17 ? "O3'" ? B G 17 "O3'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 S C 1 ? B C 1 2 1 Y 1 S G 18 ? B G 18 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5MSF 'a-form double helix' 5MSF 'hairpin loop' 5MSF 'bulge loop' 5MSF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 17 1_555 0.018 -0.057 -0.286 12.546 -9.526 -6.953 1 R_C1:G17_R R 1 ? R 17 ? 19 1 1 A C 2 1_555 A G 16 1_555 0.051 -0.126 0.229 1.943 -16.871 -0.766 2 R_C2:G16_R R 2 ? R 16 ? 19 1 1 A G 3 1_555 A C 15 1_555 -0.209 -0.077 0.087 -8.548 -17.007 -1.035 3 R_G3:C15_R R 3 ? R 15 ? 19 1 1 A G 4 1_555 A A 14 1_555 0.118 1.365 -0.456 6.451 -10.678 -9.740 4 R_G4:A14_R R 4 ? R 14 ? 8 1 1 A G 6 1_555 A C 13 1_555 -0.163 -0.108 0.483 3.038 -3.804 -1.640 5 R_G6:C13_R R 6 ? R 13 ? 19 1 1 A G 7 1_555 A C 12 1_555 -0.191 -0.052 0.234 9.220 1.085 1.664 6 R_G7:C12_R R 7 ? R 12 ? 19 1 1 B C 2 1_555 B G 16 1_555 0.172 -0.039 -0.130 9.534 -12.127 -0.556 7 S_C2:G16_S S 2 ? S 16 ? 19 1 1 B G 3 1_555 B C 15 1_555 -0.278 -0.133 0.063 -8.453 -11.833 0.055 8 S_G3:C15_S S 3 ? S 15 ? 19 1 1 B G 4 1_555 B A 14 1_555 0.076 1.585 -0.284 5.355 -6.631 -8.852 9 S_G4:A14_S S 4 ? S 14 ? 8 1 1 B G 6 1_555 B C 13 1_555 -0.100 0.000 0.143 -1.504 -8.223 0.817 10 S_G6:C13_S S 6 ? S 13 ? 19 1 1 B G 7 1_555 B C 12 1_555 -0.162 -0.074 -0.573 -0.471 -3.562 4.106 11 S_G7:C12_S S 7 ? S 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 17 1_555 A C 2 1_555 A G 16 1_555 -0.368 -1.512 3.610 -8.189 6.649 32.311 -3.735 -0.779 3.239 11.569 14.248 33.946 1 RR_C1C2:G16G17_RR R 1 ? R 17 ? R 2 ? R 16 ? 1 A C 2 1_555 A G 16 1_555 A G 3 1_555 A C 15 1_555 -0.576 -1.707 3.428 2.352 12.302 34.261 -4.369 1.235 2.636 20.071 -3.837 36.414 2 RR_C2G3:C15G16_RR R 2 ? R 16 ? R 3 ? R 15 ? 1 A G 3 1_555 A C 15 1_555 A G 4 1_555 A A 14 1_555 -0.877 -0.963 2.947 4.006 3.059 31.261 -2.257 2.252 2.712 5.630 -7.375 31.654 3 RR_G3G4:A14C15_RR R 3 ? R 15 ? R 4 ? R 14 ? 1 A G 4 1_555 A A 14 1_555 A G 6 1_555 A C 13 1_555 0.590 -2.051 3.123 -8.289 8.439 28.586 -5.236 -2.469 2.192 16.240 15.952 30.890 4 RR_G4G6:C13A14_RR R 4 ? R 14 ? R 6 ? R 13 ? 1 A G 6 1_555 A C 13 1_555 A G 7 1_555 A C 12 1_555 0.006 -2.049 3.072 -0.341 2.142 35.815 -3.608 -0.054 2.948 3.479 0.553 35.879 5 RR_G6G7:C12C13_RR R 6 ? R 13 ? R 7 ? R 12 ? 1 B C 2 1_555 B G 16 1_555 B G 3 1_555 B C 15 1_555 -0.777 -1.999 3.961 1.821 8.883 35.034 -4.641 1.542 3.329 14.459 -2.964 36.153 6 SS_C2G3:C15G16_SS S 2 ? S 16 ? S 3 ? S 15 ? 1 B G 3 1_555 B C 15 1_555 B G 4 1_555 B A 14 1_555 -0.693 -1.367 3.215 4.185 7.390 29.017 -4.001 2.111 2.670 14.365 -8.135 30.209 7 SS_G3G4:A14C15_SS S 3 ? S 15 ? S 4 ? S 14 ? 1 B G 4 1_555 B A 14 1_555 B G 6 1_555 B C 13 1_555 1.242 -1.548 3.366 -6.888 8.471 28.744 -4.459 -3.593 2.465 16.339 13.284 30.707 8 SS_G4G6:C13A14_SS S 4 ? S 14 ? S 6 ? S 13 ? 1 B G 6 1_555 B C 13 1_555 B G 7 1_555 B C 12 1_555 -0.434 -1.757 3.320 2.379 7.115 36.955 -3.607 0.969 2.911 11.084 -3.707 37.683 9 SS_G6G7:C12C13_SS S 6 ? S 13 ? S 7 ? S 12 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2MS2 _pdbx_initial_refinement_model.details 'PDB ENTRY 2MS2' #