HEADER VIRAL PROTEIN 17-MAR-17 5NGJ TITLE CRYSTAL STRUCTURE OF PB6, MAJOR TAIL TUBE PROTEIN OF BACTERIOPHAGE T5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL TUBE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TTP,TAIL PROTEIN PB6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE T5; SOURCE 3 ORGANISM_TAXID: 10726; SOURCE 4 GENE: N4, ORF134, T5.145, T5P141; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BACTERIOPHAGE, VIRAL PROTEIN, TUBE PROTEIN, VIRION PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.-A.ARNAUD,G.EFFANTIN,C.VIVES,S.ENGILBERGE,M.BACIA,P.BOULANGER, AUTHOR 2 E.GIRARD,G.SCHOEHN,C.BREYTON REVDAT 2 16-OCT-19 5NGJ 1 REMARK REVDAT 1 03-JAN-18 5NGJ 0 JRNL AUTH C.A.ARNAUD,G.EFFANTIN,C.VIVES,S.ENGILBERGE,M.BACIA, JRNL AUTH 2 P.BOULANGER,E.GIRARD,G.SCHOEHN,C.BREYTON JRNL TITL BACTERIOPHAGE T5 TAIL TUBE STRUCTURE SUGGESTS A TRIGGER JRNL TITL 2 MECHANISM FOR SIPHOVIRIDAE DNA EJECTION. JRNL REF NAT COMMUN V. 8 1953 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29209037 JRNL DOI 10.1038/S41467-017-02049-3 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 67990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3399 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4943 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2465 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4696 REMARK 3 BIN R VALUE (WORKING SET) : 0.2451 REMARK 3 BIN FREE R VALUE : 0.2756 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 247 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6667 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.40640 REMARK 3 B22 (A**2) : -10.76470 REMARK 3 B33 (A**2) : 14.17110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.10150 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.181 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.160 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.318 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.165 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 13407 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 24225 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2972 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 187 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1968 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 13407 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 984 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 14322 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.18 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 67.8335 15.1346 54.1985 REMARK 3 T TENSOR REMARK 3 T11: -0.0954 T22: -0.0371 REMARK 3 T33: -0.1920 T12: 0.0112 REMARK 3 T13: 0.0385 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 0.8736 L22: 0.7899 REMARK 3 L33: 3.1967 L12: -0.2369 REMARK 3 L13: -1.1367 L23: 0.6295 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0736 S13: 0.0718 REMARK 3 S21: -0.0248 S22: 0.0108 S23: 0.1041 REMARK 3 S31: -0.2008 S32: -0.1950 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.0476 31.9201 52.0983 REMARK 3 T TENSOR REMARK 3 T11: -0.2113 T22: -0.0690 REMARK 3 T33: -0.1844 T12: 0.0553 REMARK 3 T13: 0.0050 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.3430 L22: 1.4509 REMARK 3 L33: 3.9436 L12: 0.3485 REMARK 3 L13: 0.6417 L23: 0.4107 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: 0.0150 S13: 0.0298 REMARK 3 S21: 0.0207 S22: -0.0297 S23: 0.0331 REMARK 3 S31: 0.1971 S32: -0.0004 S33: 0.0860 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97965 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 57.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % 3350 PEG, 0.2 M HEPES PH 7.5, 0.3 REMARK 280 M LISO4, 0.1 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.54050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 39 REMARK 465 SER A 40 REMARK 465 ASN A 41 REMARK 465 SER A 42 REMARK 465 THR A 43 REMARK 465 ASP A 44 REMARK 465 ILE A 45 REMARK 465 THR A 46 REMARK 465 VAL A 47 REMARK 465 ASN A 48 REMARK 465 GLU A 49 REMARK 465 ALA A 50 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 ARG A 53 REMARK 465 PRO A 54 REMARK 465 THR A 55 REMARK 465 ARG A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 LYS A 59 REMARK 465 ARG A 60 REMARK 465 PHE A 61 REMARK 465 ASN A 62 REMARK 465 ASP A 63 REMARK 465 SER A 64 REMARK 465 LEU A 65 REMARK 465 ASN A 66 REMARK 465 GLY A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 GLN B 38 REMARK 465 ALA B 50 REMARK 465 GLY B 51 REMARK 465 PRO B 52 REMARK 465 ARG B 53 REMARK 465 PRO B 54 REMARK 465 THR B 55 REMARK 465 ARG B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 465 LYS B 59 REMARK 465 ARG B 60 REMARK 465 PHE B 61 REMARK 465 ASN B 62 REMARK 465 ASP B 63 REMARK 465 SER B 64 REMARK 465 LEU B 65 REMARK 465 ASN B 66 REMARK 465 GLY B 438 REMARK 465 ALA B 439 REMARK 465 VAL B 440 REMARK 465 THR B 461 REMARK 465 ALA B 462 REMARK 465 GLY B 463 REMARK 465 GLY B 464 REMARK 465 GLU B 465 REMARK 465 ASN B 466 REMARK 465 LEU B 467 REMARK 465 TYR B 468 REMARK 465 PHE B 469 REMARK 465 GLN B 470 REMARK 465 GLY B 471 REMARK 465 HIS B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 HIS B 475 REMARK 465 HIS B 476 REMARK 465 HIS B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 SER B 40 OG REMARK 470 ASN B 41 CG OD1 ND2 REMARK 470 SER B 42 OG REMARK 470 THR B 43 OG1 CG2 REMARK 470 ASP B 44 CG OD1 OD2 REMARK 470 ILE B 45 CG1 CG2 CD1 REMARK 470 THR B 46 OG1 CG2 REMARK 470 VAL B 47 CG1 CG2 REMARK 470 ASN B 48 CG OD1 ND2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ALA B 67 N CA CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 149 74.79 60.51 REMARK 500 ASP A 163 49.68 -159.32 REMARK 500 ASN A 270 -178.12 -176.86 REMARK 500 SER A 393 -15.71 80.08 REMARK 500 ASN A 466 97.23 -68.48 REMARK 500 ASP B 32 87.46 -157.39 REMARK 500 ASP B 33 151.22 70.23 REMARK 500 SER B 40 50.49 -162.23 REMARK 500 ASN B 41 71.23 64.73 REMARK 500 VAL B 47 67.13 69.84 REMARK 500 SER B 149 74.16 59.55 REMARK 500 ASP B 163 50.62 -159.62 REMARK 500 VAL B 329 0.13 -156.17 REMARK 500 ALA B 384 97.38 -68.00 REMARK 500 ASN B 386 42.28 -147.95 REMARK 500 THR B 389 43.03 -84.76 REMARK 500 SER B 393 58.16 19.07 REMARK 500 ALA B 421 41.36 -155.26 REMARK 500 ASP B 448 -40.49 -17.40 REMARK 500 THR B 459 -70.78 -50.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 743 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH A 745 DISTANCE = 14.99 ANGSTROMS REMARK 525 HOH B 583 DISTANCE = 8.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 DBREF 5NGJ A 1 464 UNP Q6QGE2 TUBE_BPT5 1 464 DBREF 5NGJ B 1 464 UNP Q6QGE2 TUBE_BPT5 1 464 SEQADV 5NGJ GLU A 465 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ ASN A 466 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ LEU A 467 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ TYR A 468 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ PHE A 469 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ GLN A 470 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ GLY A 471 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS A 472 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS A 473 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS A 474 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS A 475 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS A 476 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS A 477 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ GLU B 465 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ ASN B 466 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ LEU B 467 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ TYR B 468 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ PHE B 469 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ GLN B 470 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ GLY B 471 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS B 472 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS B 473 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS B 474 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS B 475 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS B 476 UNP Q6QGE2 EXPRESSION TAG SEQADV 5NGJ HIS B 477 UNP Q6QGE2 EXPRESSION TAG SEQRES 1 A 477 MET SER LEU GLN LEU LEU ARG ASN THR ARG ILE PHE VAL SEQRES 2 A 477 SER THR VAL LYS THR GLY HIS ASN LYS THR ASN THR GLN SEQRES 3 A 477 GLU ILE LEU VAL GLN ASP ASP ILE SER TRP GLY GLN ASP SEQRES 4 A 477 SER ASN SER THR ASP ILE THR VAL ASN GLU ALA GLY PRO SEQRES 5 A 477 ARG PRO THR ARG GLY SER LYS ARG PHE ASN ASP SER LEU SEQRES 6 A 477 ASN ALA ALA GLU TRP SER PHE SER THR TYR ILE LEU PRO SEQRES 7 A 477 TYR LYS ASP LYS ASN THR SER LYS GLN ILE VAL PRO ASP SEQRES 8 A 477 TYR MET LEU TRP HIS ALA LEU SER SER GLY ARG ALA ILE SEQRES 9 A 477 ASN LEU GLU GLY THR THR GLY ALA HIS ASN ASN ALA THR SEQRES 10 A 477 ASN PHE MET VAL ASN PHE LYS ASP ASN SER TYR HIS GLU SEQRES 11 A 477 LEU ALA MET LEU HIS ILE TYR ILE LEU THR ASP LYS THR SEQRES 12 A 477 TRP SER TYR ILE ASP SER CYS GLN ILE ASN GLN ALA GLU SEQRES 13 A 477 VAL ASN VAL ASP ILE GLU ASP ILE GLY ARG VAL THR TRP SEQRES 14 A 477 SER GLY ASN GLY ASN GLN LEU ILE PRO LEU ASP GLU GLN SEQRES 15 A 477 PRO PHE ASP PRO ASP GLN ILE GLY ILE ASP ASP GLU THR SEQRES 16 A 477 TYR MET THR ILE GLN GLY SER TYR ILE LYS ASN LYS LEU SEQRES 17 A 477 THR ILE LEU LYS ILE LYS ASP MET ASP THR ASN LYS SER SEQRES 18 A 477 TYR ASP ILE PRO ILE THR GLY GLY THR PHE THR ILE ASN SEQRES 19 A 477 ASN ASN ILE THR TYR LEU THR PRO ASN VAL MET SER ARG SEQRES 20 A 477 VAL THR ILE PRO ILE GLY SER PHE THR GLY ALA PHE GLU SEQRES 21 A 477 LEU THR GLY SER LEU THR ALA TYR LEU ASN ASP LYS SER SEQRES 22 A 477 LEU GLY SER MET GLU LEU TYR LYS ASP LEU ILE LYS THR SEQRES 23 A 477 LEU LYS VAL VAL ASN ARG PHE GLU ILE ALA LEU VAL LEU SEQRES 24 A 477 GLY GLY GLU TYR ASP ASP GLU ARG PRO ALA ALA ILE LEU SEQRES 25 A 477 VAL ALA LYS GLN ALA HIS VAL ASN ILE PRO THR ILE GLU SEQRES 26 A 477 THR ASP ASP VAL LEU GLY THR SER VAL GLU PHE LYS ALA SEQRES 27 A 477 ILE PRO SER ASP LEU ASP ALA GLY ASP GLU GLY TYR LEU SEQRES 28 A 477 GLY PHE SER SER LYS TYR THR ARG THR THR ILE ASN ASN SEQRES 29 A 477 LEU ILE VAL ASN GLY ASP GLY ALA THR ASP ALA VAL THR SEQRES 30 A 477 ALA ILE THR VAL LYS SER ALA GLY ASN VAL THR THR LEU SEQRES 31 A 477 ASN ARG SER ALA THR LEU GLN MET SER VAL GLU VAL THR SEQRES 32 A 477 PRO SER SER ALA ARG ASN LYS GLU VAL THR TRP ALA ILE SEQRES 33 A 477 THR ALA GLY ASP ALA ALA THR ILE ASN ALA THR GLY LEU SEQRES 34 A 477 LEU ARG ALA ASP ALA SER LYS THR GLY ALA VAL THR VAL SEQRES 35 A 477 GLU ALA THR ALA LYS ASP GLY SER GLY VAL LYS GLY THR SEQRES 36 A 477 LYS VAL ILE THR VAL THR ALA GLY GLY GLU ASN LEU TYR SEQRES 37 A 477 PHE GLN GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 477 MET SER LEU GLN LEU LEU ARG ASN THR ARG ILE PHE VAL SEQRES 2 B 477 SER THR VAL LYS THR GLY HIS ASN LYS THR ASN THR GLN SEQRES 3 B 477 GLU ILE LEU VAL GLN ASP ASP ILE SER TRP GLY GLN ASP SEQRES 4 B 477 SER ASN SER THR ASP ILE THR VAL ASN GLU ALA GLY PRO SEQRES 5 B 477 ARG PRO THR ARG GLY SER LYS ARG PHE ASN ASP SER LEU SEQRES 6 B 477 ASN ALA ALA GLU TRP SER PHE SER THR TYR ILE LEU PRO SEQRES 7 B 477 TYR LYS ASP LYS ASN THR SER LYS GLN ILE VAL PRO ASP SEQRES 8 B 477 TYR MET LEU TRP HIS ALA LEU SER SER GLY ARG ALA ILE SEQRES 9 B 477 ASN LEU GLU GLY THR THR GLY ALA HIS ASN ASN ALA THR SEQRES 10 B 477 ASN PHE MET VAL ASN PHE LYS ASP ASN SER TYR HIS GLU SEQRES 11 B 477 LEU ALA MET LEU HIS ILE TYR ILE LEU THR ASP LYS THR SEQRES 12 B 477 TRP SER TYR ILE ASP SER CYS GLN ILE ASN GLN ALA GLU SEQRES 13 B 477 VAL ASN VAL ASP ILE GLU ASP ILE GLY ARG VAL THR TRP SEQRES 14 B 477 SER GLY ASN GLY ASN GLN LEU ILE PRO LEU ASP GLU GLN SEQRES 15 B 477 PRO PHE ASP PRO ASP GLN ILE GLY ILE ASP ASP GLU THR SEQRES 16 B 477 TYR MET THR ILE GLN GLY SER TYR ILE LYS ASN LYS LEU SEQRES 17 B 477 THR ILE LEU LYS ILE LYS ASP MET ASP THR ASN LYS SER SEQRES 18 B 477 TYR ASP ILE PRO ILE THR GLY GLY THR PHE THR ILE ASN SEQRES 19 B 477 ASN ASN ILE THR TYR LEU THR PRO ASN VAL MET SER ARG SEQRES 20 B 477 VAL THR ILE PRO ILE GLY SER PHE THR GLY ALA PHE GLU SEQRES 21 B 477 LEU THR GLY SER LEU THR ALA TYR LEU ASN ASP LYS SER SEQRES 22 B 477 LEU GLY SER MET GLU LEU TYR LYS ASP LEU ILE LYS THR SEQRES 23 B 477 LEU LYS VAL VAL ASN ARG PHE GLU ILE ALA LEU VAL LEU SEQRES 24 B 477 GLY GLY GLU TYR ASP ASP GLU ARG PRO ALA ALA ILE LEU SEQRES 25 B 477 VAL ALA LYS GLN ALA HIS VAL ASN ILE PRO THR ILE GLU SEQRES 26 B 477 THR ASP ASP VAL LEU GLY THR SER VAL GLU PHE LYS ALA SEQRES 27 B 477 ILE PRO SER ASP LEU ASP ALA GLY ASP GLU GLY TYR LEU SEQRES 28 B 477 GLY PHE SER SER LYS TYR THR ARG THR THR ILE ASN ASN SEQRES 29 B 477 LEU ILE VAL ASN GLY ASP GLY ALA THR ASP ALA VAL THR SEQRES 30 B 477 ALA ILE THR VAL LYS SER ALA GLY ASN VAL THR THR LEU SEQRES 31 B 477 ASN ARG SER ALA THR LEU GLN MET SER VAL GLU VAL THR SEQRES 32 B 477 PRO SER SER ALA ARG ASN LYS GLU VAL THR TRP ALA ILE SEQRES 33 B 477 THR ALA GLY ASP ALA ALA THR ILE ASN ALA THR GLY LEU SEQRES 34 B 477 LEU ARG ALA ASP ALA SER LYS THR GLY ALA VAL THR VAL SEQRES 35 B 477 GLU ALA THR ALA LYS ASP GLY SER GLY VAL LYS GLY THR SEQRES 36 B 477 LYS VAL ILE THR VAL THR ALA GLY GLY GLU ASN LEU TYR SEQRES 37 B 477 PHE GLN GLY HIS HIS HIS HIS HIS HIS HET CL A 501 1 HET CL A 502 1 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 5(CL 1-) FORMUL 8 HOH *228(H2 O) HELIX 1 AA1 ASP A 91 SER A 100 1 10 HELIX 2 AA2 ASP A 185 GLY A 190 1 6 HELIX 3 AA3 ASP A 192 GLY A 201 1 10 HELIX 4 AA4 ASN A 270 GLY A 275 1 6 HELIX 5 AA5 SER A 276 VAL A 290 1 15 HELIX 6 AA6 THR A 358 GLY A 369 1 12 HELIX 7 AA7 GLY A 385 VAL A 387 5 3 HELIX 8 AA8 ASP B 91 SER B 100 1 10 HELIX 9 AA9 ASP B 185 GLY B 190 1 6 HELIX 10 AB1 ASP B 192 GLY B 201 1 10 HELIX 11 AB2 ASN B 270 GLY B 275 1 6 HELIX 12 AB3 SER B 276 VAL B 290 1 15 HELIX 13 AB4 THR B 358 GLY B 369 1 12 HELIX 14 AB5 ALA B 432 LYS B 436 5 5 SHEET 1 A 5 THR A 25 ILE A 28 0 SHEET 2 A 5 THR A 9 SER A 14 -1 SHEET 3 A 5 HIS A 135 THR A 140 -1 SHEET 4 A 5 THR A 143 ASP A 148 -1 SHEET 5 A 5 GLN A 175 LEU A 179 -1 SHEET 1 B 8 ILE A 34 GLY A 37 0 SHEET 2 B 8 ALA A 68 TYR A 75 -1 SHEET 3 B 8 ARG A 166 GLY A 173 -1 SHEET 4 B 8 CYS A 150 ASN A 158 -1 SHEET 5 B 8 ILE A 226 ASN A 234 -1 SHEET 6 B 8 GLU A 260 ALA A 267 -1 SHEET 7 B 8 THR A 332 ALA A 338 -1 SHEET 8 B 8 ALA A 317 ASN A 320 -1 SHEET 1 C 2 PRO A 78 LYS A 80 0 SHEET 2 C 2 GLN A 87 VAL A 89 -1 SHEET 1 D 7 GLY A 111 ASN A 114 0 SHEET 2 D 7 PHE A 119 ASN A 122 -1 SHEET 3 D 7 TYR A 350 SER A 354 -1 SHEET 4 D 7 ALA A 309 ALA A 314 -1 SHEET 5 D 7 GLU A 294 LEU A 299 -1 SHEET 6 D 7 THR A 209 ASP A 215 -1 SHEET 7 D 7 LYS A 220 ILE A 226 -1 SHEET 1 E 2 ALA A 378 SER A 383 0 SHEET 2 E 2 MET A 398 THR A 403 -1 SHEET 1 F 4 THR A 389 ASN A 391 0 SHEET 2 F 4 LYS A 453 THR A 461 1 SHEET 3 F 4 GLY A 438 ALA A 446 -1 SHEET 4 F 4 VAL A 412 ALA A 418 -1 SHEET 1 G 3 THR A 395 GLN A 397 0 SHEET 2 G 3 LEU A 429 ALA A 432 -1 SHEET 3 G 3 ALA A 422 ILE A 424 -1 SHEET 1 H 5 THR B 25 ILE B 28 0 SHEET 2 H 5 THR B 9 SER B 14 -1 SHEET 3 H 5 HIS B 135 THR B 140 -1 SHEET 4 H 5 THR B 143 ASP B 148 -1 SHEET 5 H 5 GLN B 175 LEU B 179 -1 SHEET 1 I 8 SER B 35 GLY B 37 0 SHEET 2 I 8 ALA B 68 TYR B 75 -1 SHEET 3 I 8 ARG B 166 GLY B 173 -1 SHEET 4 I 8 GLN B 151 ASN B 158 -1 SHEET 5 I 8 ILE B 226 ASN B 234 -1 SHEET 6 I 8 GLU B 260 ALA B 267 -1 SHEET 7 I 8 THR B 332 ALA B 338 -1 SHEET 8 I 8 ALA B 317 ASN B 320 -1 SHEET 1 J 2 ASP B 44 THR B 46 0 SHEET 2 J 2 THR B 238 LEU B 240 1 SHEET 1 K 2 PRO B 78 LYS B 80 0 SHEET 2 K 2 GLN B 87 VAL B 89 -1 SHEET 1 L 7 GLY B 111 ASN B 114 0 SHEET 2 L 7 PHE B 119 ASN B 122 -1 SHEET 3 L 7 TYR B 350 SER B 354 -1 SHEET 4 L 7 ALA B 309 ALA B 314 -1 SHEET 5 L 7 GLU B 294 LEU B 299 -1 SHEET 6 L 7 THR B 209 ASP B 215 -1 SHEET 7 L 7 LYS B 220 ILE B 226 -1 SHEET 1 M 2 ALA B 378 LYS B 382 0 SHEET 2 M 2 SER B 399 THR B 403 -1 SHEET 1 N 3 VAL B 412 THR B 417 0 SHEET 2 N 3 THR B 441 ALA B 446 -1 SHEET 3 N 3 LYS B 453 LYS B 456 -1 CISPEP 1 THR A 403 PRO A 404 0 -9.47 CISPEP 2 THR B 403 PRO B 404 0 -8.31 SITE 1 AC1 5 ALA A 97 LEU A 131 ALA A 132 GLN A 151 SITE 2 AC1 5 ILE A 152 SITE 1 AC2 7 SER A 99 SER A 100 GLY A 111 ASN A 122 SITE 2 AC2 7 PHE A 123 LYS A 124 ASP A 125 SITE 1 AC3 2 THR A 388 THR A 389 SITE 1 AC4 1 GLY A 464 SITE 1 AC5 2 ARG A 102 ALA A 103 CRYST1 76.790 115.081 83.366 90.00 111.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013023 0.000000 0.005230 0.00000 SCALE2 0.000000 0.008690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012926 0.00000