data_5NGN # _entry.id 5NGN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5NGN WWPDB D_1200003305 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5NGN _pdbx_database_status.recvd_initial_deposition_date 2017-03-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lei, J.' 1 ? 'Tan, W.L.' 2 ? 'Sakai, N.' 3 ? 'Hilgenfeld, R.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 5194 _citation.page_last 5194 _citation.title 'Lybatides from Lycium barbarum Contain An Unusual Cystine-stapled Helical Peptide Scaffold.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-017-05037-1 _citation.pdbx_database_id_PubMed 28701689 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, W.L.' 1 primary 'Wong, K.H.' 2 primary 'Lei, J.' 3 primary 'Sakai, N.' 4 primary 'Tan, H.W.' 5 primary 'Hilgenfeld, R.' 6 primary 'Tam, J.P.' 7 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 100.60 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5NGN _cell.details ? _cell.formula_units_Z ? _cell.length_a 19.318 _cell.length_a_esd ? _cell.length_b 54.655 _cell.length_b_esd ? _cell.length_c 42.400 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5NGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'lybatide 2' 3628.035 3 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn ACETONITRILE 41.052 4 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 5 water nat water 18.015 155 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DSCSEYCSNRCPSCDGQTQTQYTLCCINICCPS _entity_poly.pdbx_seq_one_letter_code_can DSCSEYCSNRCPSCDGQTQTQYTLCCINICCPS _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 SER n 1 3 CYS n 1 4 SER n 1 5 GLU n 1 6 TYR n 1 7 CYS n 1 8 SER n 1 9 ASN n 1 10 ARG n 1 11 CYS n 1 12 PRO n 1 13 SER n 1 14 CYS n 1 15 ASP n 1 16 GLY n 1 17 GLN n 1 18 THR n 1 19 GLN n 1 20 THR n 1 21 GLN n 1 22 TYR n 1 23 THR n 1 24 LEU n 1 25 CYS n 1 26 CYS n 1 27 ILE n 1 28 ASN n 1 29 ILE n 1 30 CYS n 1 31 CYS n 1 32 PRO n 1 33 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 33 _entity_src_nat.common_name 'goji berry' _entity_src_nat.pdbx_organism_scientific 'Lycium barbarum' _entity_src_nat.pdbx_ncbi_taxonomy_id 112863 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5NGN _struct_ref.pdbx_db_accession 5NGN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5NGN A 1 ? 33 ? 5NGN 1 ? 33 ? 1 33 2 1 5NGN B 1 ? 33 ? 5NGN 1 ? 33 ? 1 33 3 1 5NGN C 1 ? 33 ? 5NGN 1 ? 33 ? 1 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CCN non-polymer . ACETONITRILE ? 'C2 H3 N' 41.052 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5NGN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.6 M ammonium sulfate, 0.1 M sodium citrate tribasic dihydrate, pH 4.5, 2% PEG400 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-07-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9184 1.0 2 1.8000 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, DESY BEAMLINE P11' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '0.9184, 1.8000' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline P11 _diffrn_source.pdbx_synchrotron_site 'PETRA III, DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5NGN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.48 _reflns.d_resolution_low 41.68 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14465 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rmerge_I_obs 0.033 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 44.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.014 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.48 _reflns_shell.d_res_low 1.56 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 31.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2057 _reflns_shell.percent_possible_all 98.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.039 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.017 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.998 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.06 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.11 _refine.aniso_B[2][2] 0.06 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.15 _refine.B_iso_max ? _refine.B_iso_mean 10.561 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.978 _refine.correlation_coeff_Fo_to_Fc_free 0.965 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5NGN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.48 _refine.ls_d_res_low 41.68 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13735 _refine.ls_number_reflns_R_free 713 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.48 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.10904 _refine.ls_R_factor_R_free 0.13700 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.10760 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.049 _refine.pdbx_overall_ESU_R_Free 0.053 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.713 _refine.overall_SU_ML 0.028 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 728 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 155 _refine_hist.number_atoms_total 914 _refine_hist.d_res_high 1.48 _refine_hist.d_res_low 41.68 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.020 0.020 778 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 637 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.951 1.982 1052 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.237 3.000 1497 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.585 5.000 97 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 38.960 26.364 33 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 10.035 15.000 117 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 6.125 15.000 3 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.145 0.200 115 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.021 875 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 156 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.880 0.683 391 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.854 0.680 390 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.368 1.016 484 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.371 1.018 485 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.823 0.989 387 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.821 0.995 388 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.588 1.341 568 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.297 13.747 1025 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 7.293 13.779 1026 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.479 _refine_ls_shell.d_res_low 1.517 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_R_work 962 _refine_ls_shell.percent_reflns_obs 97.05 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.158 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.094 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5NGN _struct.title 'Lybatide 2, a cystine-rich peptide from Lycium barbarum' _struct.pdbx_descriptor 'lybatide 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5NGN _struct_keywords.text 'cysteine-rich peptide, pi-helix, wolfberry, disulfide bonds, plant protein' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 5 ? L N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 11 ? ASP A 15 ? CYS A 11 ASP A 15 5 ? 5 HELX_P HELX_P2 AA2 THR A 18 ? ILE A 29 ? THR A 18 ILE A 29 1 ? 12 HELX_P HELX_P3 AA3 CYS B 11 ? ASP B 15 ? CYS B 11 ASP B 15 5 ? 5 HELX_P HELX_P4 AA4 THR B 18 ? ILE B 29 ? THR B 18 ILE B 29 1 ? 12 HELX_P HELX_P5 AA5 CYS C 11 ? ASP C 15 ? CYS C 11 ASP C 15 5 ? 5 HELX_P HELX_P6 AA6 THR C 18 ? ILE C 29 ? THR C 18 ILE C 29 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 26 SG ? ? A CYS 3 A CYS 26 1_555 ? ? ? ? ? ? ? 2.042 ? disulf2 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 7 A CYS 31 1_555 ? ? ? ? ? ? ? 2.014 ? disulf3 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 11 A CYS 30 1_555 ? ? ? ? ? ? ? 2.086 ? disulf4 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 25 SG ? ? A CYS 14 A CYS 25 1_555 ? ? ? ? ? ? ? 2.045 ? disulf5 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 26 SG ? ? B CYS 3 B CYS 26 1_555 ? ? ? ? ? ? ? 2.074 ? disulf6 disulf ? ? B CYS 7 SG ? ? ? 1_555 B CYS 31 SG ? ? B CYS 7 B CYS 31 1_555 ? ? ? ? ? ? ? 2.043 ? disulf7 disulf ? ? B CYS 11 SG ? ? ? 1_555 B CYS 30 SG ? ? B CYS 11 B CYS 30 1_555 ? ? ? ? ? ? ? 2.041 ? disulf8 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 25 SG ? ? B CYS 14 B CYS 25 1_555 ? ? ? ? ? ? ? 2.039 ? disulf9 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 26 SG ? ? C CYS 3 C CYS 26 1_555 ? ? ? ? ? ? ? 2.051 ? disulf10 disulf ? ? C CYS 7 SG ? ? ? 1_555 C CYS 31 SG ? ? C CYS 7 C CYS 31 1_555 ? ? ? ? ? ? ? 2.048 ? disulf11 disulf ? ? C CYS 11 SG ? ? ? 1_555 C CYS 30 SG ? ? C CYS 11 C CYS 30 1_555 ? ? ? ? ? ? ? 2.054 ? disulf12 disulf ? ? C CYS 14 SG ? ? ? 1_555 C CYS 25 SG ? ? C CYS 14 C CYS 25 1_555 ? ? ? ? ? ? ? 2.095 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 101 ? 4 'binding site for residue GOL A 101' AC2 Software A CCN 102 ? 6 'binding site for residue CCN A 102' AC3 Software C CCN 101 ? 4 'binding site for residue CCN C 101' AC4 Software C CCN 102 ? 5 'binding site for residue CCN C 102' AC5 Software C CCN 103 ? 1 'binding site for residue CCN C 103' AC6 Software C PG4 104 ? 15 'binding site for residue PG4 C 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 16 ? GLY A 16 . ? 1_555 ? 2 AC1 4 THR A 20 ? THR A 20 . ? 1_455 ? 3 AC1 4 HOH J . ? HOH A 201 . ? 1_555 ? 4 AC1 4 ASN B 28 ? ASN B 28 . ? 1_455 ? 5 AC2 6 ARG A 10 ? ARG A 10 . ? 1_555 ? 6 AC2 6 HOH J . ? HOH A 202 . ? 1_555 ? 7 AC2 6 PRO C 12 ? PRO C 12 . ? 1_455 ? 8 AC2 6 ASP C 15 ? ASP C 15 . ? 1_455 ? 9 AC2 6 CCN G . ? CCN C 102 . ? 1_455 ? 10 AC2 6 HOH L . ? HOH C 242 . ? 1_455 ? 11 AC3 4 HOH L . ? HOH C 216 . ? 1_555 ? 12 AC3 4 HOH L . ? HOH C 220 . ? 1_555 ? 13 AC3 4 HOH L . ? HOH C 222 . ? 1_555 ? 14 AC3 4 HOH L . ? HOH C 228 . ? 1_555 ? 15 AC4 5 SER A 8 ? SER A 8 . ? 1_655 ? 16 AC4 5 ARG A 10 ? ARG A 10 . ? 1_655 ? 17 AC4 5 CCN E . ? CCN A 102 . ? 1_655 ? 18 AC4 5 SER C 13 ? SER C 13 . ? 1_555 ? 19 AC4 5 HOH L . ? HOH C 201 . ? 1_555 ? 20 AC5 1 HOH L . ? HOH C 256 . ? 1_555 ? 21 AC6 15 SER C 4 ? SER C 4 . ? 1_555 ? 22 AC6 15 GLU C 5 ? GLU C 5 . ? 1_555 ? 23 AC6 15 CYS C 7 ? CYS C 7 . ? 1_555 ? 24 AC6 15 SER C 13 ? SER C 13 . ? 1_455 ? 25 AC6 15 ILE C 29 ? ILE C 29 . ? 1_455 ? 26 AC6 15 HOH L . ? HOH C 202 . ? 1_555 ? 27 AC6 15 HOH L . ? HOH C 204 . ? 1_555 ? 28 AC6 15 HOH L . ? HOH C 206 . ? 1_555 ? 29 AC6 15 HOH L . ? HOH C 207 . ? 1_555 ? 30 AC6 15 HOH L . ? HOH C 214 . ? 1_455 ? 31 AC6 15 HOH L . ? HOH C 224 . ? 1_455 ? 32 AC6 15 HOH L . ? HOH C 232 . ? 1_555 ? 33 AC6 15 HOH L . ? HOH C 234 . ? 1_555 ? 34 AC6 15 HOH L . ? HOH C 237 . ? 1_555 ? 35 AC6 15 HOH L . ? HOH C 252 . ? 1_455 ? # _atom_sites.entry_id 5NGN _atom_sites.fract_transf_matrix[1][1] 0.051765 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009686 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018297 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023994 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 SER 33 33 ? ? ? A . n B 1 1 ASP 1 1 1 ASP ASP B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 CYS 3 3 3 CYS CYS B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 TYR 6 6 6 TYR TYR B . n B 1 7 CYS 7 7 7 CYS CYS B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 ASN 9 9 9 ASN ASN B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 CYS 11 11 11 CYS CYS B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 SER 13 13 13 SER SER B . n B 1 14 CYS 14 14 14 CYS CYS B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLN 17 17 17 GLN GLN B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 THR 20 20 20 THR THR B . n B 1 21 GLN 21 21 21 GLN GLN B . n B 1 22 TYR 22 22 22 TYR TYR B . n B 1 23 THR 23 23 23 THR THR B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 CYS 25 25 25 CYS CYS B . n B 1 26 CYS 26 26 26 CYS CYS B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 ASN 28 28 28 ASN ASN B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 CYS 30 30 30 CYS CYS B . n B 1 31 CYS 31 31 31 CYS CYS B . n B 1 32 PRO 32 32 32 PRO PRO B . n B 1 33 SER 33 33 33 SER SER B . n C 1 1 ASP 1 1 1 ASP ASP C . n C 1 2 SER 2 2 2 SER SER C . n C 1 3 CYS 3 3 3 CYS CYS C . n C 1 4 SER 4 4 4 SER SER C . n C 1 5 GLU 5 5 5 GLU GLU C . n C 1 6 TYR 6 6 6 TYR TYR C . n C 1 7 CYS 7 7 7 CYS CYS C . n C 1 8 SER 8 8 8 SER SER C . n C 1 9 ASN 9 9 9 ASN ASN C . n C 1 10 ARG 10 10 10 ARG ARG C . n C 1 11 CYS 11 11 11 CYS CYS C . n C 1 12 PRO 12 12 12 PRO PRO C . n C 1 13 SER 13 13 13 SER SER C . n C 1 14 CYS 14 14 14 CYS CYS C . n C 1 15 ASP 15 15 15 ASP ASP C . n C 1 16 GLY 16 16 16 GLY GLY C . n C 1 17 GLN 17 17 17 GLN GLN C . n C 1 18 THR 18 18 18 THR THR C . n C 1 19 GLN 19 19 19 GLN GLN C . n C 1 20 THR 20 20 20 THR THR C . n C 1 21 GLN 21 21 21 GLN GLN C . n C 1 22 TYR 22 22 22 TYR TYR C . n C 1 23 THR 23 23 23 THR THR C . n C 1 24 LEU 24 24 24 LEU LEU C . n C 1 25 CYS 25 25 25 CYS CYS C . n C 1 26 CYS 26 26 26 CYS CYS C . n C 1 27 ILE 27 27 27 ILE ILE C . n C 1 28 ASN 28 28 28 ASN ASN C . n C 1 29 ILE 29 29 29 ILE ILE C . n C 1 30 CYS 30 30 30 CYS CYS C . n C 1 31 CYS 31 31 31 CYS CYS C . n C 1 32 PRO 32 32 32 PRO PRO C . n C 1 33 SER 33 33 33 SER SER C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL 1 101 1 GOL GOL A . E 3 CCN 1 102 1 CCN CCN A . F 3 CCN 1 101 2 CCN CCN C . G 3 CCN 1 102 3 CCN CCN C . H 3 CCN 1 103 4 CCN CCN C . I 4 PG4 1 104 1 PG4 P40 C . J 5 HOH 1 201 115 HOH HOH A . J 5 HOH 2 202 47 HOH HOH A . J 5 HOH 3 203 75 HOH HOH A . J 5 HOH 4 204 31 HOH HOH A . J 5 HOH 5 205 34 HOH HOH A . J 5 HOH 6 206 99 HOH HOH A . J 5 HOH 7 207 46 HOH HOH A . J 5 HOH 8 208 139 HOH HOH A . J 5 HOH 9 209 67 HOH HOH A . J 5 HOH 10 210 76 HOH HOH A . J 5 HOH 11 211 24 HOH HOH A . J 5 HOH 12 212 141 HOH HOH A . J 5 HOH 13 213 32 HOH HOH A . J 5 HOH 14 214 103 HOH HOH A . J 5 HOH 15 215 43 HOH HOH A . J 5 HOH 16 216 11 HOH HOH A . J 5 HOH 17 217 38 HOH HOH A . J 5 HOH 18 218 69 HOH HOH A . J 5 HOH 19 219 71 HOH HOH A . J 5 HOH 20 220 25 HOH HOH A . J 5 HOH 21 221 20 HOH HOH A . J 5 HOH 22 222 51 HOH HOH A . J 5 HOH 23 223 48 HOH HOH A . J 5 HOH 24 224 100 HOH HOH A . J 5 HOH 25 225 39 HOH HOH A . J 5 HOH 26 226 91 HOH HOH A . J 5 HOH 27 227 56 HOH HOH A . J 5 HOH 28 228 42 HOH HOH A . J 5 HOH 29 229 110 HOH HOH A . J 5 HOH 30 230 68 HOH HOH A . J 5 HOH 31 231 94 HOH HOH A . J 5 HOH 32 232 17 HOH HOH A . J 5 HOH 33 233 92 HOH HOH A . J 5 HOH 34 234 27 HOH HOH A . J 5 HOH 35 235 77 HOH HOH A . J 5 HOH 36 236 37 HOH HOH A . J 5 HOH 37 237 134 HOH HOH A . J 5 HOH 38 238 140 HOH HOH A . K 5 HOH 1 101 118 HOH HOH B . K 5 HOH 2 102 153 HOH HOH B . K 5 HOH 3 103 85 HOH HOH B . K 5 HOH 4 104 74 HOH HOH B . K 5 HOH 5 105 53 HOH HOH B . K 5 HOH 6 106 97 HOH HOH B . K 5 HOH 7 107 73 HOH HOH B . K 5 HOH 8 108 93 HOH HOH B . K 5 HOH 9 109 4 HOH HOH B . K 5 HOH 10 110 95 HOH HOH B . K 5 HOH 11 111 142 HOH HOH B . K 5 HOH 12 112 9 HOH HOH B . K 5 HOH 13 113 2 HOH HOH B . K 5 HOH 14 114 80 HOH HOH B . K 5 HOH 15 115 21 HOH HOH B . K 5 HOH 16 116 109 HOH HOH B . K 5 HOH 17 117 102 HOH HOH B . K 5 HOH 18 118 84 HOH HOH B . K 5 HOH 19 119 104 HOH HOH B . K 5 HOH 20 120 83 HOH HOH B . K 5 HOH 21 121 65 HOH HOH B . K 5 HOH 22 122 22 HOH HOH B . K 5 HOH 23 123 41 HOH HOH B . K 5 HOH 24 124 8 HOH HOH B . K 5 HOH 25 125 112 HOH HOH B . K 5 HOH 26 126 106 HOH HOH B . K 5 HOH 27 127 81 HOH HOH B . K 5 HOH 28 128 111 HOH HOH B . K 5 HOH 29 129 114 HOH HOH B . K 5 HOH 30 130 72 HOH HOH B . K 5 HOH 31 131 116 HOH HOH B . K 5 HOH 32 132 23 HOH HOH B . K 5 HOH 33 133 138 HOH HOH B . K 5 HOH 34 134 50 HOH HOH B . K 5 HOH 35 135 10 HOH HOH B . K 5 HOH 36 136 79 HOH HOH B . K 5 HOH 37 137 66 HOH HOH B . K 5 HOH 38 138 88 HOH HOH B . K 5 HOH 39 139 108 HOH HOH B . K 5 HOH 40 140 137 HOH HOH B . K 5 HOH 41 141 36 HOH HOH B . K 5 HOH 42 142 132 HOH HOH B . K 5 HOH 43 143 119 HOH HOH B . K 5 HOH 44 144 146 HOH HOH B . K 5 HOH 45 145 154 HOH HOH B . K 5 HOH 46 146 155 HOH HOH B . K 5 HOH 47 147 82 HOH HOH B . K 5 HOH 48 148 122 HOH HOH B . K 5 HOH 49 149 120 HOH HOH B . L 5 HOH 1 201 49 HOH HOH C . L 5 HOH 2 202 117 HOH HOH C . L 5 HOH 3 203 26 HOH HOH C . L 5 HOH 4 204 151 HOH HOH C . L 5 HOH 5 205 86 HOH HOH C . L 5 HOH 6 206 144 HOH HOH C . L 5 HOH 7 207 148 HOH HOH C . L 5 HOH 8 208 30 HOH HOH C . L 5 HOH 9 209 7 HOH HOH C . L 5 HOH 10 210 105 HOH HOH C . L 5 HOH 11 211 29 HOH HOH C . L 5 HOH 12 212 128 HOH HOH C . L 5 HOH 13 213 14 HOH HOH C . L 5 HOH 14 214 147 HOH HOH C . L 5 HOH 15 215 87 HOH HOH C . L 5 HOH 16 216 135 HOH HOH C . L 5 HOH 17 217 133 HOH HOH C . L 5 HOH 18 218 33 HOH HOH C . L 5 HOH 19 219 40 HOH HOH C . L 5 HOH 20 220 5 HOH HOH C . L 5 HOH 21 221 28 HOH HOH C . L 5 HOH 22 222 16 HOH HOH C . L 5 HOH 23 223 143 HOH HOH C . L 5 HOH 24 224 98 HOH HOH C . L 5 HOH 25 225 19 HOH HOH C . L 5 HOH 26 226 1 HOH HOH C . L 5 HOH 27 227 18 HOH HOH C . L 5 HOH 28 228 150 HOH HOH C . L 5 HOH 29 229 90 HOH HOH C . L 5 HOH 30 230 3 HOH HOH C . L 5 HOH 31 231 63 HOH HOH C . L 5 HOH 32 232 64 HOH HOH C . L 5 HOH 33 233 15 HOH HOH C . L 5 HOH 34 234 149 HOH HOH C . L 5 HOH 35 235 60 HOH HOH C . L 5 HOH 36 236 107 HOH HOH C . L 5 HOH 37 237 89 HOH HOH C . L 5 HOH 38 238 59 HOH HOH C . L 5 HOH 39 239 13 HOH HOH C . L 5 HOH 40 240 131 HOH HOH C . L 5 HOH 41 241 12 HOH HOH C . L 5 HOH 42 242 70 HOH HOH C . L 5 HOH 43 243 125 HOH HOH C . L 5 HOH 44 244 6 HOH HOH C . L 5 HOH 45 245 58 HOH HOH C . L 5 HOH 46 246 113 HOH HOH C . L 5 HOH 47 247 55 HOH HOH C . L 5 HOH 48 248 35 HOH HOH C . L 5 HOH 49 249 44 HOH HOH C . L 5 HOH 50 250 96 HOH HOH C . L 5 HOH 51 251 101 HOH HOH C . L 5 HOH 52 252 145 HOH HOH C . L 5 HOH 53 253 126 HOH HOH C . L 5 HOH 54 254 136 HOH HOH C . L 5 HOH 55 255 129 HOH HOH C . L 5 HOH 56 256 152 HOH HOH C . L 5 HOH 57 257 123 HOH HOH C . L 5 HOH 58 258 54 HOH HOH C . L 5 HOH 59 259 52 HOH HOH C . L 5 HOH 60 260 127 HOH HOH C . L 5 HOH 61 261 61 HOH HOH C . L 5 HOH 62 262 57 HOH HOH C . L 5 HOH 63 263 45 HOH HOH C . L 5 HOH 64 264 130 HOH HOH C . L 5 HOH 65 265 121 HOH HOH C . L 5 HOH 66 266 124 HOH HOH C . L 5 HOH 67 267 62 HOH HOH C . L 5 HOH 68 268 78 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,J 2 1 B,K 3 1 C,F,G,H,I,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-26 2 'Structure model' 1 1 2018-04-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.pdbx_wavelength_list' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0151 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 203 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 222 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 10 ? ? CZ A ARG 10 ? ? NH1 A ARG 10 ? ? 117.16 120.30 -3.14 0.50 N 2 1 NE C ARG 10 ? ? CZ C ARG 10 ? ? NH1 C ARG 10 ? ? 116.90 120.30 -3.40 0.50 N 3 1 NE C ARG 10 ? ? CZ C ARG 10 ? ? NH2 C ARG 10 ? ? 124.11 120.30 3.81 0.50 N # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 33 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 33 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Federal Ministry of Education and Research' Germany 'BMBF- 01DP12027' 1 'National Research Foundation in Singapore' Singapore NRF-CRP8-2011-05 2 'NTU iFood Research Grant' Singapore M4081467.080 3 NTU Singapore SGP-PROG-008 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 ACETONITRILE CCN 4 'TETRAETHYLENE GLYCOL' PG4 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #