HEADER TRANSFERASE 10-MAY-17 5NXC TITLE LIM DOMAIN KINASE 1 (LIMK1) IN COMPLEX WITH PF-00477736 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN KINASE 1; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: UNP RESIDUES 330-637; COMPND 5 SYNONYM: LIMK-1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIMK1, LIMK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE ACTIN CYTOSKELETON INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MATHEA,E.SALAH,A.C.W.PIKE,S.BUSHELL,E.P.CARPENTER,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,A.N.BULLOCK,S.KNAPP REVDAT 2 17-JAN-24 5NXC 1 REMARK REVDAT 1 24-MAY-17 5NXC 0 JRNL AUTH S.MATHEA,E.SALAH,A.C.W.PIKE,S.BUSHELL,E.P.CARPENTER, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, JRNL AUTH 3 A.N.BULLOCK,S.KNAPP JRNL TITL LIM DOMAIN KINASE (LIMK1) IN COMPLEX WITH PF-00477736 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 1.96000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2224 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2057 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3022 ; 1.749 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4716 ; 1.087 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 7.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;37.157 ;23.229 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;14.788 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.989 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2606 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 520 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1095 ; 2.247 ; 2.873 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1096 ; 2.246 ; 2.873 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 3.532 ; 4.300 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1365 ; 3.531 ; 4.300 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1129 ; 2.294 ; 2.960 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1130 ; 2.293 ; 2.961 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1659 ; 3.547 ; 4.368 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2468 ; 5.052 ;22.040 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2457 ; 5.054 ;22.032 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5NXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1200004882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 84.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.22000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YI6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0 0.2 M MGCL2 10% REMARK 280 PEG8K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.19600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.19600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.19350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.91800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.19350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.91800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.19600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.19350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.91800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.19600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.19350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.91800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 480 REMARK 465 LEU L 481 REMARK 465 ALA L 482 REMARK 465 ARG L 483 REMARK 465 LEU L 484 REMARK 465 MET L 485 REMARK 465 VAL L 486 REMARK 465 ASP L 487 REMARK 465 GLU L 488 REMARK 465 LYS L 489 REMARK 465 THR L 490 REMARK 465 GLN L 491 REMARK 465 PRO L 492 REMARK 465 GLU L 493 REMARK 465 GLY L 494 REMARK 465 LEU L 495 REMARK 465 ARG L 496 REMARK 465 SER L 497 REMARK 465 LEU L 498 REMARK 465 LYS L 499 REMARK 465 LYS L 500 REMARK 465 PRO L 501 REMARK 465 ASP L 502 REMARK 465 ARG L 503 REMARK 465 LYS L 504 REMARK 465 LYS L 505 REMARK 465 ARG L 506 REMARK 465 TYR L 507 REMARK 465 THR L 508 REMARK 465 VAL L 509 REMARK 465 VAL L 510 REMARK 465 ARG L 633 REMARK 465 ARG L 634 REMARK 465 GLY L 635 REMARK 465 GLU L 636 REMARK 465 SER L 637 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 347 CG CD CE NZ REMARK 470 CYS L 349 SG REMARK 470 PHE L 350 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG L 359 CZ NH1 NH2 REMARK 470 ILE L 371 CG1 CG2 CD1 REMARK 470 ARG L 372 CG CD NE CZ NH1 NH2 REMARK 470 ASP L 374 CG OD1 OD2 REMARK 470 GLU L 375 CG CD OE1 OE2 REMARK 470 GLU L 376 CG CD OE1 OE2 REMARK 470 THR L 377 OG1 CG2 REMARK 470 ARG L 379 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 383 CD CE NZ REMARK 470 LYS L 386 CE NZ REMARK 470 LYS L 398 NZ REMARK 470 TYR L 404 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS L 405 CG CD CE NZ REMARK 470 ASP L 406 CG OD1 OD2 REMARK 470 LYS L 407 CG CD CE NZ REMARK 470 LYS L 417 CE NZ REMARK 470 GLN L 431 CG CD OE1 NE2 REMARK 470 ARG L 459 NE CZ NH1 NH2 REMARK 470 GLU L 470 CG CD OE1 OE2 REMARK 470 ARG L 569 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 585 NE CZ NH1 NH2 REMARK 470 LYS L 599 CD CE NZ REMARK 470 GLN L 623 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 389 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG L 422 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 CYS L 586 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG L 372 128.47 98.13 REMARK 500 ASP L 374 140.45 -37.30 REMARK 500 LYS L 405 -72.63 -105.72 REMARK 500 ASP L 406 -90.67 -116.02 REMARK 500 ASN L 455 29.90 46.77 REMARK 500 ARG L 459 -18.62 78.54 REMARK 500 LYS L 472 1.89 85.10 REMARK 500 SER L 578 -22.66 84.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9DB L 701 DBREF 5NXC L 330 637 UNP P53667 LIMK1_HUMAN 330 637 SEQADV 5NXC SER L 328 UNP P53667 EXPRESSION TAG SEQADV 5NXC MET L 329 UNP P53667 EXPRESSION TAG SEQRES 1 L 310 SER MET PRO HIS ARG ILE PHE ARG PRO SER ASP LEU ILE SEQRES 2 L 310 HIS GLY GLU VAL LEU GLY LYS GLY CYS PHE GLY GLN ALA SEQRES 3 L 310 ILE LYS VAL THR HIS ARG GLU THR GLY GLU VAL MET VAL SEQRES 4 L 310 MET LYS GLU LEU ILE ARG PHE ASP GLU GLU THR GLN ARG SEQRES 5 L 310 THR PHE LEU LYS GLU VAL LYS VAL MET ARG CYS LEU GLU SEQRES 6 L 310 HIS PRO ASN VAL LEU LYS PHE ILE GLY VAL LEU TYR LYS SEQRES 7 L 310 ASP LYS ARG LEU ASN PHE ILE THR GLU TYR ILE LYS GLY SEQRES 8 L 310 GLY THR LEU ARG GLY ILE ILE LYS SER MET ASP SER GLN SEQRES 9 L 310 TYR PRO TRP SER GLN ARG VAL SER PHE ALA LYS ASP ILE SEQRES 10 L 310 ALA SER GLY MET ALA TYR LEU HIS SER MET ASN ILE ILE SEQRES 11 L 310 HIS ARG ASP LEU ASN SER HIS ASN CYS LEU VAL ARG GLU SEQRES 12 L 310 ASN LYS ASN VAL VAL VAL ALA ASP PHE GLY LEU ALA ARG SEQRES 13 L 310 LEU MET VAL ASP GLU LYS THR GLN PRO GLU GLY LEU ARG SEQRES 14 L 310 SER LEU LYS LYS PRO ASP ARG LYS LYS ARG TYR THR VAL SEQRES 15 L 310 VAL GLY ASN PRO TYR TRP MET ALA PRO GLU MET ILE ASN SEQRES 16 L 310 GLY ARG SER TYR ASP GLU LYS VAL ASP VAL PHE SER PHE SEQRES 17 L 310 GLY ILE VAL LEU CYS GLU ILE ILE GLY ARG VAL ASN ALA SEQRES 18 L 310 ASP PRO ASP TYR LEU PRO ARG THR MET ASP PHE GLY LEU SEQRES 19 L 310 ASN VAL ARG GLY PHE LEU ASP ARG TYR CYS PRO PRO ASN SEQRES 20 L 310 CYS PRO PRO SER PHE PHE PRO ILE THR VAL ARG CYS CYS SEQRES 21 L 310 ASP LEU ASP PRO GLU LYS ARG PRO SER PHE VAL LYS LEU SEQRES 22 L 310 GLU HIS TRP LEU GLU THR LEU ARG MET HIS LEU ALA GLY SEQRES 23 L 310 HIS LEU PRO LEU GLY PRO GLN LEU GLU GLN LEU ASP ARG SEQRES 24 L 310 GLY PHE TRP GLU THR TYR ARG ARG GLY GLU SER HET 9DB L 701 31 HETNAM 9DB (2~{R})-2-AZANYL-2-CYCLOHEXYL-~{N}-[2-(1-METHYLPYRAZOL- HETNAM 2 9DB 4-YL)-9-OXIDANYLIDENE-3,10,11- HETNAM 3 9DB TRIAZATRICYCLO[6.4.1.0^{4,13}]TRIDECA-1,4,6,8(13),11- HETNAM 4 9DB PENTAEN-6-YL]ETHANAMIDE FORMUL 2 9DB C22 H25 N7 O2 FORMUL 3 HOH *44(H2 O) HELIX 1 AA1 ARG L 335 SER L 337 5 3 HELIX 2 AA2 ASP L 374 LEU L 391 1 18 HELIX 3 AA3 THR L 420 SER L 427 1 8 HELIX 4 AA4 PRO L 433 MET L 454 1 22 HELIX 5 AA5 ALA L 517 ASN L 522 1 6 HELIX 6 AA6 GLU L 528 ARG L 545 1 18 HELIX 7 AA7 ASN L 562 TYR L 570 1 9 HELIX 8 AA8 SER L 578 CYS L 587 1 10 HELIX 9 AA9 ASP L 590 ARG L 594 5 5 HELIX 10 AB1 SER L 596 HIS L 614 1 19 HELIX 11 AB2 GLY L 618 TYR L 632 1 15 SHEET 1 AA1 5 LEU L 339 LYS L 347 0 SHEET 2 AA1 5 GLY L 351 HIS L 358 -1 O ALA L 353 N LEU L 345 SHEET 3 AA1 5 VAL L 364 LEU L 370 -1 O MET L 365 N VAL L 356 SHEET 4 AA1 5 LEU L 409 GLU L 414 -1 O THR L 413 N VAL L 366 SHEET 5 AA1 5 PHE L 399 TYR L 404 -1 N LEU L 403 O ASN L 410 SHEET 1 AA2 2 CYS L 466 VAL L 468 0 SHEET 2 AA2 2 VAL L 474 VAL L 476 -1 O VAL L 475 N LEU L 467 SITE 1 AC1 14 GLY L 346 LYS L 347 GLY L 351 GLN L 352 SITE 2 AC1 14 VAL L 366 LYS L 368 LEU L 397 THR L 413 SITE 3 AC1 14 GLU L 414 TYR L 415 ILE L 416 GLY L 419 SITE 4 AC1 14 LEU L 467 ASP L 478 CRYST1 88.387 95.836 84.392 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011314 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011849 0.00000