data_5OB3 # _entry.id 5OB3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5OB3 pdb_00005ob3 10.2210/pdb5ob3/pdb WWPDB D_1200005469 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-04 2 'Structure model' 1 1 2017-10-11 3 'Structure model' 1 2 2017-11-29 4 'Structure model' 1 3 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5OB3 _pdbx_database_status.recvd_initial_deposition_date 2017-06-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fernandez-Millan, P.' 1 0000-0002-1887-8466 'Autour, A.' 2 ? 'Westhof, E.' 3 0000-0002-6172-5422 'Ryckelynck, M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev RNA _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first 1788 _citation.page_last 1795 _citation.title 'Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.063008.117 _citation.pdbx_database_id_PubMed 28939697 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fernandez-Millan, P.' 1 ? primary 'Autour, A.' 2 ? primary 'Ennifar, E.' 3 ? primary 'Westhof, E.' 4 ? primary 'Ryckelynck, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA aptamer (69-MER)' 22373.242 1 ? ? ? ? 2 non-polymer syn '4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol' 254.233 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 4 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 5 water nat water 18.015 51 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAGUACGGUGAGGGUCGGGUCCAGUAGGUACGCCUACUGUUGAGUAGAGUGUGGGCUCCGUACUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAGUACGGUGAGGGUCGGGUCCAGUAGGUACGCCUACUGUUGAGUAGAGUGUGGGCUCCGUACUCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol' 1TU 3 'POTASSIUM ION' K 4 SPERMINE SPM 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 U n 1 7 A n 1 8 C n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 A n 1 14 G n 1 15 G n 1 16 G n 1 17 U n 1 18 C n 1 19 G n 1 20 G n 1 21 G n 1 22 U n 1 23 C n 1 24 C n 1 25 A n 1 26 G n 1 27 U n 1 28 A n 1 29 G n 1 30 G n 1 31 U n 1 32 A n 1 33 C n 1 34 G n 1 35 C n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 U n 1 41 G n 1 42 U n 1 43 U n 1 44 G n 1 45 A n 1 46 G n 1 47 U n 1 48 A n 1 49 G n 1 50 A n 1 51 G n 1 52 U n 1 53 G n 1 54 U n 1 55 G n 1 56 G n 1 57 G n 1 58 C n 1 59 U n 1 60 C n 1 61 C n 1 62 G n 1 63 U n 1 64 A n 1 65 C n 1 66 U n 1 67 C n 1 68 C n 1 69 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 69 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1TU non-polymer . '4-(3,5-difluoro-4-hydroxybenzyl)-1,2-dimethyl-1H-imidazol-5-ol' ? 'C12 H12 F2 N2 O2' 254.233 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 C 23 23 23 C C A . n A 1 24 C 24 24 24 C C A . n A 1 25 A 25 25 25 A A A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 A 32 32 32 A A A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 C 35 35 35 C C A . n A 1 36 C 36 36 36 C C A . n A 1 37 U 37 37 37 U U A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 U 43 43 43 U U A . n A 1 44 G 44 44 44 G G A . n A 1 45 A 45 45 45 A A A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 A 48 48 48 A A A . n A 1 49 G 49 49 49 G G A . n A 1 50 A 50 50 50 A A A . n A 1 51 G 51 51 51 G G A . n A 1 52 U 52 52 52 U U A . n A 1 53 G 53 53 53 G G A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 55 G G A . n A 1 56 G 56 56 56 G G A . n A 1 57 G 57 57 57 G G A . n A 1 58 C 58 58 58 C C A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 G 62 62 62 G G A . n A 1 63 U 63 63 63 U U A . n A 1 64 A 64 64 64 A A A . n A 1 65 C 65 65 65 C C A . n A 1 66 U 66 66 66 U U A . n A 1 67 C 67 67 67 C C A . n A 1 68 C 68 68 68 C C A . n A 1 69 C 69 69 69 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1TU 1 101 1 1TU 2ZY A . C 3 K 1 102 1 K K A . D 3 K 1 103 2 K K A . E 4 SPM 1 104 201 SPM SPM A . F 5 HOH 1 201 11 HOH HOH A . F 5 HOH 2 202 22 HOH HOH A . F 5 HOH 3 203 44 HOH HOH A . F 5 HOH 4 204 50 HOH HOH A . F 5 HOH 5 205 45 HOH HOH A . F 5 HOH 6 206 35 HOH HOH A . F 5 HOH 7 207 3 HOH HOH A . F 5 HOH 8 208 23 HOH HOH A . F 5 HOH 9 209 24 HOH HOH A . F 5 HOH 10 210 49 HOH HOH A . F 5 HOH 11 211 32 HOH HOH A . F 5 HOH 12 212 20 HOH HOH A . F 5 HOH 13 213 14 HOH HOH A . F 5 HOH 14 214 33 HOH HOH A . F 5 HOH 15 215 51 HOH HOH A . F 5 HOH 16 216 47 HOH HOH A . F 5 HOH 17 217 40 HOH HOH A . F 5 HOH 18 218 36 HOH HOH A . F 5 HOH 19 219 4 HOH HOH A . F 5 HOH 20 220 19 HOH HOH A . F 5 HOH 21 221 10 HOH HOH A . F 5 HOH 22 222 9 HOH HOH A . F 5 HOH 23 223 1 HOH HOH A . F 5 HOH 24 224 31 HOH HOH A . F 5 HOH 25 225 37 HOH HOH A . F 5 HOH 26 226 41 HOH HOH A . F 5 HOH 27 227 7 HOH HOH A . F 5 HOH 28 228 21 HOH HOH A . F 5 HOH 29 229 8 HOH HOH A . F 5 HOH 30 230 38 HOH HOH A . F 5 HOH 31 231 42 HOH HOH A . F 5 HOH 32 232 13 HOH HOH A . F 5 HOH 33 233 26 HOH HOH A . F 5 HOH 34 234 46 HOH HOH A . F 5 HOH 35 235 48 HOH HOH A . F 5 HOH 36 236 18 HOH HOH A . F 5 HOH 37 237 34 HOH HOH A . F 5 HOH 38 238 12 HOH HOH A . F 5 HOH 39 239 5 HOH HOH A . F 5 HOH 40 240 27 HOH HOH A . F 5 HOH 41 241 6 HOH HOH A . F 5 HOH 42 242 15 HOH HOH A . F 5 HOH 43 243 30 HOH HOH A . F 5 HOH 44 244 29 HOH HOH A . F 5 HOH 45 245 16 HOH HOH A . F 5 HOH 46 246 25 HOH HOH A . F 5 HOH 47 247 2 HOH HOH A . F 5 HOH 48 248 43 HOH HOH A . F 5 HOH 49 249 39 HOH HOH A . F 5 HOH 50 250 28 HOH HOH A . F 5 HOH 51 251 17 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 91.860 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5OB3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 150.700 _cell.length_a_esd ? _cell.length_b 48.500 _cell.length_b_esd ? _cell.length_c 30.100 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5OB3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40 mM NaCl, 40 mM Sodium cacodylate pH 7.0, 32% MPD, 12 mM Spermine' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.80002 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.80002 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5OB3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0040 _reflns.d_resolution_low 46.17 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27458 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 15.6 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.106 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.0040 _reflns_shell.d_res_low 2.12 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2470 _reflns_shell.percent_possible_all 91.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.82 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 145.080 _refine.B_iso_mean 62.5115 _refine.B_iso_min 22.680 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5OB3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0040 _refine.ls_d_res_low 46.1660 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27458 _refine.ls_number_reflns_R_free 1406 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.0200 _refine.ls_percent_reflns_R_free 5.1200 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1996 _refine.ls_R_factor_R_free 0.2226 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1983 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4q9r.pdb _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.4700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.0040 _refine_hist.d_res_low 46.1660 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 1580 _refine_hist.pdbx_number_residues_total 69 _refine_hist.pdbx_B_iso_mean_ligand 43.53 _refine_hist.pdbx_B_iso_mean_solvent 43.06 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1483 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1690 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.187 ? 2626 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.050 ? 345 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 71 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.705 ? 838 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0040 2.0757 1803 . 103 1700 64.0000 . . . 0.2933 0.0000 0.3507 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.0757 2.1588 2800 . 126 2674 97.0000 . . . 0.3175 0.0000 0.2723 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.1588 2.2570 2846 . 136 2710 100.0000 . . . 0.2954 0.0000 0.2366 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.2570 2.3760 2847 . 153 2694 100.0000 . . . 0.2879 0.0000 0.2404 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.3760 2.5249 2863 . 158 2705 100.0000 . . . 0.2973 0.0000 0.2233 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.5249 2.7198 2893 . 145 2748 100.0000 . . . 0.2842 0.0000 0.2510 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.7198 2.9934 2856 . 140 2716 100.0000 . . . 0.3190 0.0000 0.2536 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.9934 3.4265 2824 . 116 2708 100.0000 . . . 0.2464 0.0000 0.2105 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.4265 4.3165 2865 . 157 2708 100.0000 . . . 0.1813 0.0000 0.1754 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 4.3165 46.1779 2861 . 172 2689 100.0000 . . . 0.1715 0.0000 0.1479 . . . . . . 10 . . . # _struct.entry_id 5OB3 _struct.title 'iSpinach aptamer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5OB3 _struct_keywords.text 'aptamer, iSpinach, DFHBI, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5OB3 _struct_ref.pdbx_db_accession 5OB3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5OB3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 69 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5OB3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 69 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 69 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 790 ? 1 MORE 1 ? 1 'SSA (A^2)' 12100 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 15 O6 ? ? ? 1_555 C K . K ? ? A G 15 A K 102 1_555 ? ? ? ? ? ? ? 2.839 ? ? metalc2 metalc ? ? A G 15 O6 ? ? ? 1_555 D K . K ? ? A G 15 A K 103 1_555 ? ? ? ? ? ? ? 3.065 ? ? metalc3 metalc ? ? A G 16 O6 ? ? ? 1_555 D K . K ? ? A G 16 A K 103 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc4 metalc ? ? A G 19 O6 ? ? ? 1_555 C K . K ? ? A G 19 A K 102 1_555 ? ? ? ? ? ? ? 3.154 ? ? metalc5 metalc ? ? A G 19 O6 ? ? ? 1_555 D K . K ? ? A G 19 A K 103 1_555 ? ? ? ? ? ? ? 3.003 ? ? metalc6 metalc ? ? A G 20 O6 ? ? ? 1_555 D K . K ? ? A G 20 A K 103 1_555 ? ? ? ? ? ? ? 2.834 ? ? metalc7 metalc ? ? A G 46 O6 ? ? ? 1_555 D K . K ? ? A G 46 A K 103 1_555 ? ? ? ? ? ? ? 2.817 ? ? metalc8 metalc ? ? A G 49 O6 ? ? ? 1_555 C K . K ? ? A G 49 A K 102 1_555 ? ? ? ? ? ? ? 3.019 ? ? metalc9 metalc ? ? A G 49 O6 ? ? ? 1_555 D K . K ? ? A G 49 A K 103 1_555 ? ? ? ? ? ? ? 2.725 ? ? metalc10 metalc ? ? A G 51 O6 ? ? ? 1_555 D K . K ? ? A G 51 A K 103 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc11 metalc ? ? A G 53 O6 ? ? ? 1_555 C K . K ? ? A G 53 A K 102 1_555 ? ? ? ? ? ? ? 3.070 ? ? metalc12 metalc ? ? A G 53 O6 ? ? ? 1_555 D K . K ? ? A G 53 A K 103 1_555 ? ? ? ? ? ? ? 3.089 ? ? metalc13 metalc ? ? A U 54 "O2'" ? ? ? 1_555 C K . K ? ? A U 54 A K 102 1_555 ? ? ? ? ? ? ? 2.999 ? ? metalc14 metalc ? ? A U 54 O2 ? ? ? 1_555 C K . K ? ? A U 54 A K 102 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc15 metalc ? ? A G 55 O6 ? ? ? 1_555 C K . K ? ? A G 55 A K 102 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc16 metalc ? ? C K . K ? ? ? 1_555 F HOH . O ? ? A K 102 A HOH 236 1_555 ? ? ? ? ? ? ? 2.839 ? ? hydrog1 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 1 A C 69 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 2 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 2 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 2 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 3 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 3 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 3 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 4 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 4 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 6 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 6 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 7 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 7 A U 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 62 N1 ? ? A C 8 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 62 O6 ? ? A C 8 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 62 N2 ? ? A C 8 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 9 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 9 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 9 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 10 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 10 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 10 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 59 O4 ? ? A U 11 A U 59 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog27 hydrog ? ? A U 11 O2 ? ? ? 1_555 A U 59 N3 ? ? A U 11 A U 59 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog28 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 58 N3 ? ? A G 12 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 58 O2 ? ? A G 12 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 58 N4 ? ? A G 12 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 13 N1 ? ? ? 1_555 A G 57 N1 ? ? A A 13 A G 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A A 13 N6 ? ? ? 1_555 A G 57 O6 ? ? A A 13 A G 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog33 hydrog ? ? A G 14 N2 ? ? ? 1_555 A G 56 O6 ? ? A G 14 A G 56 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A G 19 O6 ? ? A G 15 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A G 19 N7 ? ? A G 15 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A G 15 N7 ? ? ? 1_555 A G 49 N2 ? ? A G 15 A G 49 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A G 15 O6 ? ? ? 1_555 A G 49 N1 ? ? A G 15 A G 49 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 16 N1 ? ? ? 1_555 A G 20 O6 ? ? A G 16 A G 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 16 N2 ? ? ? 1_555 A G 20 N7 ? ? A G 16 A G 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A G 16 N7 ? ? ? 1_555 A G 46 N2 ? ? A G 16 A G 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? A G 16 O6 ? ? ? 1_555 A G 46 N1 ? ? A G 16 A G 46 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? A C 18 N4 ? ? ? 1_555 A U 47 O4 ? ? A C 18 A U 47 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog43 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 18 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 18 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 18 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 19 N1 ? ? ? 1_555 A G 53 O6 ? ? A G 19 A G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? A G 19 N2 ? ? ? 1_555 A G 53 N7 ? ? A G 19 A G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? A G 20 N1 ? ? ? 1_555 A G 51 O6 ? ? A G 20 A G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? A G 20 N2 ? ? ? 1_555 A G 51 N7 ? ? A G 20 A G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 45 N1 ? ? A U 22 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 45 N6 ? ? A U 22 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 23 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 23 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 23 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 24 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 24 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 24 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 40 N3 ? ? A A 25 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 40 O4 ? ? A A 25 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 27 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 27 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 28 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 28 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 29 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 30 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 30 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 30 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 31 O2 ? ? ? 1_555 A G 34 N1 ? ? A U 31 A G 34 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog74 hydrog ? ? A U 42 N3 ? ? ? 1_555 A A 45 N7 ? ? A U 42 A A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog75 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 45 N6 ? ? A U 42 A A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog76 hydrog ? ? A G 46 N7 ? ? ? 1_555 A G 51 N2 ? ? A G 46 A G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog77 hydrog ? ? A G 46 O6 ? ? ? 1_555 A G 51 N1 ? ? A G 46 A G 51 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog78 hydrog ? ? A U 47 O2 ? ? ? 1_555 A U 54 N3 ? ? A U 47 A U 54 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog79 hydrog ? ? A G 49 N7 ? ? ? 1_555 A G 53 N2 ? ? A G 49 A G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog80 hydrog ? ? A G 49 O6 ? ? ? 1_555 A G 53 N1 ? ? A G 49 A G 53 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 62.6 ? 2 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 49 ? A G 49 ? 1_555 73.0 ? 3 O6 ? A G 19 ? A G 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 49 ? A G 49 ? 1_555 94.1 ? 4 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 102.8 ? 5 O6 ? A G 19 ? A G 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 62.1 ? 6 O6 ? A G 49 ? A G 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 62.2 ? 7 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 "O2'" ? A U 54 ? A U 54 ? 1_555 149.9 ? 8 O6 ? A G 19 ? A G 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 "O2'" ? A U 54 ? A U 54 ? 1_555 137.4 ? 9 O6 ? A G 49 ? A G 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 "O2'" ? A U 54 ? A U 54 ? 1_555 82.0 ? 10 O6 ? A G 53 ? A G 53 ? 1_555 K ? C K . ? A K 102 ? 1_555 "O2'" ? A U 54 ? A U 54 ? 1_555 79.2 ? 11 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O2 ? A U 54 ? A U 54 ? 1_555 88.4 ? 12 O6 ? A G 19 ? A G 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O2 ? A U 54 ? A U 54 ? 1_555 149.9 ? 13 O6 ? A G 49 ? A G 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O2 ? A U 54 ? A U 54 ? 1_555 68.2 ? 14 O6 ? A G 53 ? A G 53 ? 1_555 K ? C K . ? A K 102 ? 1_555 O2 ? A U 54 ? A U 54 ? 1_555 122.5 ? 15 "O2'" ? A U 54 ? A U 54 ? 1_555 K ? C K . ? A K 102 ? 1_555 O2 ? A U 54 ? A U 54 ? 1_555 66.4 ? 16 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 99.7 ? 17 O6 ? A G 19 ? A G 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 68.2 ? 18 O6 ? A G 49 ? A G 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 162.1 ? 19 O6 ? A G 53 ? A G 53 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 104.9 ? 20 "O2'" ? A U 54 ? A U 54 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 108.9 ? 21 O2 ? A U 54 ? A U 54 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 55 ? A G 55 ? 1_555 128.8 ? 22 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 85.1 ? 23 O6 ? A G 19 ? A G 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 121.1 ? 24 O6 ? A G 49 ? A G 49 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 123.3 ? 25 O6 ? A G 53 ? A G 53 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 171.7 ? 26 "O2'" ? A U 54 ? A U 54 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 95.1 ? 27 O2 ? A U 54 ? A U 54 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 59.4 ? 28 O6 ? A G 55 ? A G 55 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 71.0 ? 29 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 16 ? A G 16 ? 1_555 78.5 ? 30 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 62.0 ? 31 O6 ? A G 16 ? A G 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 91.1 ? 32 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 20 ? A G 20 ? 1_555 130.8 ? 33 O6 ? A G 16 ? A G 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 20 ? A G 20 ? 1_555 78.6 ? 34 O6 ? A G 19 ? A G 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 20 ? A G 20 ? 1_555 75.6 ? 35 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 46 ? A G 46 ? 1_555 96.9 ? 36 O6 ? A G 16 ? A G 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 46 ? A G 46 ? 1_555 74.8 ? 37 O6 ? A G 19 ? A G 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 46 ? A G 46 ? 1_555 157.0 ? 38 O6 ? A G 20 ? A G 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 46 ? A G 46 ? 1_555 117.9 ? 39 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 49 ? A G 49 ? 1_555 73.8 ? 40 O6 ? A G 16 ? A G 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 49 ? A G 49 ? 1_555 136.7 ? 41 O6 ? A G 19 ? A G 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 49 ? A G 49 ? 1_555 104.1 ? 42 O6 ? A G 20 ? A G 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 49 ? A G 49 ? 1_555 144.2 ? 43 O6 ? A G 46 ? A G 46 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 49 ? A G 49 ? 1_555 76.2 ? 44 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 51 ? A G 51 ? 1_555 155.7 ? 45 O6 ? A G 16 ? A G 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 51 ? A G 51 ? 1_555 120.3 ? 46 O6 ? A G 19 ? A G 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 51 ? A G 51 ? 1_555 127.3 ? 47 O6 ? A G 20 ? A G 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 51 ? A G 51 ? 1_555 71.4 ? 48 O6 ? A G 46 ? A G 46 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 51 ? A G 51 ? 1_555 75.7 ? 49 O6 ? A G 49 ? A G 49 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 51 ? A G 51 ? 1_555 81.9 ? 50 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 97.3 ? 51 O6 ? A G 16 ? A G 16 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 152.3 ? 52 O6 ? A G 19 ? A G 19 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 63.6 ? 53 O6 ? A G 20 ? A G 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 84.1 ? 54 O6 ? A G 46 ? A G 46 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 132.8 ? 55 O6 ? A G 49 ? A G 49 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 65.2 ? 56 O6 ? A G 51 ? A G 51 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 53 ? A G 53 ? 1_555 73.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 1TU 101 ? 8 'binding site for residue 1TU A 101' AC2 Software A K 102 ? 7 'binding site for residue K A 102' AC3 Software A K 103 ? 8 'binding site for residue K A 103' AC4 Software A SPM 104 ? 4 'binding site for residue SPM A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 G A 16 ? G A 16 . ? 1_555 ? 2 AC1 8 G A 21 ? G A 21 . ? 1_555 ? 3 AC1 8 U A 42 ? U A 42 . ? 1_555 ? 4 AC1 8 A A 45 ? A A 45 . ? 1_555 ? 5 AC1 8 G A 46 ? G A 46 . ? 1_555 ? 6 AC1 8 A A 50 ? A A 50 . ? 1_555 ? 7 AC1 8 G A 51 ? G A 51 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 220 . ? 1_555 ? 9 AC2 7 G A 15 ? G A 15 . ? 1_555 ? 10 AC2 7 G A 19 ? G A 19 . ? 1_555 ? 11 AC2 7 G A 49 ? G A 49 . ? 1_555 ? 12 AC2 7 G A 53 ? G A 53 . ? 1_555 ? 13 AC2 7 U A 54 ? U A 54 . ? 1_555 ? 14 AC2 7 G A 55 ? G A 55 . ? 1_555 ? 15 AC2 7 HOH F . ? HOH A 236 . ? 1_555 ? 16 AC3 8 G A 15 ? G A 15 . ? 1_555 ? 17 AC3 8 G A 16 ? G A 16 . ? 1_555 ? 18 AC3 8 G A 19 ? G A 19 . ? 1_555 ? 19 AC3 8 G A 20 ? G A 20 . ? 1_555 ? 20 AC3 8 G A 46 ? G A 46 . ? 1_555 ? 21 AC3 8 G A 49 ? G A 49 . ? 1_555 ? 22 AC3 8 G A 51 ? G A 51 . ? 1_555 ? 23 AC3 8 G A 53 ? G A 53 . ? 1_555 ? 24 AC4 4 A A 13 ? A A 13 . ? 1_555 ? 25 AC4 4 G A 14 ? G A 14 . ? 1_555 ? 26 AC4 4 U A 47 ? U A 47 . ? 1_555 ? 27 AC4 4 A A 48 ? A A 48 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A G 20 ? ? C6 A G 20 ? ? O6 A G 20 ? ? 125.67 119.90 5.77 0.60 N 2 1 C5 A G 20 ? ? C6 A G 20 ? ? O6 A G 20 ? ? 121.65 128.60 -6.95 0.60 N 3 1 C6 A G 49 ? ? N1 A G 49 ? ? C2 A G 49 ? ? 121.04 125.10 -4.06 0.60 N 4 1 N7 A G 49 ? ? C8 A G 49 ? ? N9 A G 49 ? ? 109.52 113.10 -3.58 0.50 N 5 1 C5 A G 49 ? ? C6 A G 49 ? ? O6 A G 49 ? ? 124.76 128.60 -3.84 0.60 N 6 1 "O5'" A G 56 ? ? P A G 56 ? ? OP2 A G 56 ? ? 100.08 105.70 -5.62 0.90 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 203 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -57.2220 12.1727 9.1736 0.7585 0.8912 0.7769 0.2391 0.2014 0.0429 5.1966 1.9885 4.3459 0.3344 -3.4241 1.5495 0.0640 -0.2286 0.1505 -0.3550 -0.2554 0.7171 0.8133 -0.3712 -1.2612 'X-RAY DIFFRACTION' 2 ? refined -24.5053 14.5684 -8.6073 0.3189 0.3873 0.3115 0.0012 -0.0168 0.0478 5.1115 2.5087 2.2406 -0.3596 -0.3653 -0.3667 -0.1006 -0.0471 0.0599 0.2791 0.2924 -0.4583 -0.0423 0.1684 0.5268 'X-RAY DIFFRACTION' 3 ? refined -11.1195 14.7252 -7.8980 0.3915 0.5817 0.6294 0.0130 -0.0293 0.0120 9.6529 1.9095 2.9436 0.3555 4.9708 0.1632 0.5131 -0.3551 0.1201 0.0619 0.0921 -0.8024 -0.0757 0.3690 0.3110 'X-RAY DIFFRACTION' 4 ? refined -33.1960 7.1393 -3.2230 0.3046 0.2185 0.2326 0.0210 -0.0339 -0.0088 2.3956 4.1609 2.5731 0.6707 -1.2448 0.0711 -0.1004 0.1143 0.0916 -0.0255 -0.2307 -0.1407 0.4488 0.2422 0.2114 'X-RAY DIFFRACTION' 5 ? refined -59.4805 14.8894 11.2808 0.6043 0.9022 0.7016 0.1615 0.2018 0.0614 2.9586 1.8936 3.0953 1.5213 -1.0533 1.1914 -0.2235 0.1056 -0.0312 -0.6271 0.1996 0.8894 0.6768 -0.2908 -1.0601 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 13 ;chain 'A' and (resid 1 through 13 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 14 A 30 ;chain 'A' and (resid 14 through 30 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 31 A 42 ;chain 'A' and (resid 31 through 42 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 43 A 56 ;chain 'A' and (resid 43 through 56 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 57 A 69 ;chain 'A' and (resid 57 through 69 ) ; ? ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1TU C1 C Y N 1 1TU C2 C Y N 2 1TU C3 C Y N 3 1TU C4 C Y N 4 1TU C5 C Y N 5 1TU C6 C Y N 6 1TU C10 C N N 7 1TU C11 C Y N 8 1TU C13 C Y N 9 1TU O18 O N N 10 1TU C15 C Y N 11 1TU N14 N Y N 12 1TU C16 C N N 13 1TU C17 C N N 14 1TU N12 N Y N 15 1TU F8 F N N 16 1TU O9 O N N 17 1TU F7 F N N 18 1TU H1 H N N 19 1TU H2 H N N 20 1TU H3 H N N 21 1TU H4 H N N 22 1TU H6 H N N 23 1TU H7 H N N 24 1TU H8 H N N 25 1TU H9 H N N 26 1TU H10 H N N 27 1TU H11 H N N 28 1TU H12 H N N 29 1TU H5 H N N 30 A OP3 O N N 31 A P P N N 32 A OP1 O N N 33 A OP2 O N N 34 A "O5'" O N N 35 A "C5'" C N N 36 A "C4'" C N R 37 A "O4'" O N N 38 A "C3'" C N S 39 A "O3'" O N N 40 A "C2'" C N R 41 A "O2'" O N N 42 A "C1'" C N R 43 A N9 N Y N 44 A C8 C Y N 45 A N7 N Y N 46 A C5 C Y N 47 A C6 C Y N 48 A N6 N N N 49 A N1 N Y N 50 A C2 C Y N 51 A N3 N Y N 52 A C4 C Y N 53 A HOP3 H N N 54 A HOP2 H N N 55 A "H5'" H N N 56 A "H5''" H N N 57 A "H4'" H N N 58 A "H3'" H N N 59 A "HO3'" H N N 60 A "H2'" H N N 61 A "HO2'" H N N 62 A "H1'" H N N 63 A H8 H N N 64 A H61 H N N 65 A H62 H N N 66 A H2 H N N 67 C OP3 O N N 68 C P P N N 69 C OP1 O N N 70 C OP2 O N N 71 C "O5'" O N N 72 C "C5'" C N N 73 C "C4'" C N R 74 C "O4'" O N N 75 C "C3'" C N S 76 C "O3'" O N N 77 C "C2'" C N R 78 C "O2'" O N N 79 C "C1'" C N R 80 C N1 N N N 81 C C2 C N N 82 C O2 O N N 83 C N3 N N N 84 C C4 C N N 85 C N4 N N N 86 C C5 C N N 87 C C6 C N N 88 C HOP3 H N N 89 C HOP2 H N N 90 C "H5'" H N N 91 C "H5''" H N N 92 C "H4'" H N N 93 C "H3'" H N N 94 C "HO3'" H N N 95 C "H2'" H N N 96 C "HO2'" H N N 97 C "H1'" H N N 98 C H41 H N N 99 C H42 H N N 100 C H5 H N N 101 C H6 H N N 102 G OP3 O N N 103 G P P N N 104 G OP1 O N N 105 G OP2 O N N 106 G "O5'" O N N 107 G "C5'" C N N 108 G "C4'" C N R 109 G "O4'" O N N 110 G "C3'" C N S 111 G "O3'" O N N 112 G "C2'" C N R 113 G "O2'" O N N 114 G "C1'" C N R 115 G N9 N Y N 116 G C8 C Y N 117 G N7 N Y N 118 G C5 C Y N 119 G C6 C N N 120 G O6 O N N 121 G N1 N N N 122 G C2 C N N 123 G N2 N N N 124 G N3 N N N 125 G C4 C Y N 126 G HOP3 H N N 127 G HOP2 H N N 128 G "H5'" H N N 129 G "H5''" H N N 130 G "H4'" H N N 131 G "H3'" H N N 132 G "HO3'" H N N 133 G "H2'" H N N 134 G "HO2'" H N N 135 G "H1'" H N N 136 G H8 H N N 137 G H1 H N N 138 G H21 H N N 139 G H22 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 K K K N N 144 SPM N1 N N N 145 SPM C2 C N N 146 SPM C3 C N N 147 SPM C4 C N N 148 SPM N5 N N N 149 SPM C6 C N N 150 SPM C7 C N N 151 SPM C8 C N N 152 SPM C9 C N N 153 SPM N10 N N N 154 SPM C11 C N N 155 SPM C12 C N N 156 SPM C13 C N N 157 SPM N14 N N N 158 SPM HN11 H N N 159 SPM HN12 H N N 160 SPM H21 H N N 161 SPM H22 H N N 162 SPM H31 H N N 163 SPM H32 H N N 164 SPM H41 H N N 165 SPM H42 H N N 166 SPM HN5 H N N 167 SPM H61 H N N 168 SPM H62 H N N 169 SPM H71 H N N 170 SPM H72 H N N 171 SPM H81 H N N 172 SPM H82 H N N 173 SPM H91 H N N 174 SPM H92 H N N 175 SPM HN0 H N N 176 SPM H111 H N N 177 SPM H112 H N N 178 SPM H121 H N N 179 SPM H122 H N N 180 SPM H131 H N N 181 SPM H132 H N N 182 SPM HN41 H N N 183 SPM HN42 H N N 184 U OP3 O N N 185 U P P N N 186 U OP1 O N N 187 U OP2 O N N 188 U "O5'" O N N 189 U "C5'" C N N 190 U "C4'" C N R 191 U "O4'" O N N 192 U "C3'" C N S 193 U "O3'" O N N 194 U "C2'" C N R 195 U "O2'" O N N 196 U "C1'" C N R 197 U N1 N N N 198 U C2 C N N 199 U O2 O N N 200 U N3 N N N 201 U C4 C N N 202 U O4 O N N 203 U C5 C N N 204 U C6 C N N 205 U HOP3 H N N 206 U HOP2 H N N 207 U "H5'" H N N 208 U "H5''" H N N 209 U "H4'" H N N 210 U "H3'" H N N 211 U "HO3'" H N N 212 U "H2'" H N N 213 U "HO2'" H N N 214 U "H1'" H N N 215 U H3 H N N 216 U H5 H N N 217 U H6 H N N 218 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1TU O18 C15 sing N N 1 1TU C16 N14 sing N N 2 1TU C15 N14 sing Y N 3 1TU C15 C11 doub Y N 4 1TU N14 C13 sing Y N 5 1TU C10 C11 sing N N 6 1TU C10 C2 sing N N 7 1TU C11 N12 sing Y N 8 1TU C13 N12 doub Y N 9 1TU C13 C17 sing N N 10 1TU C1 C2 doub Y N 11 1TU C1 C6 sing Y N 12 1TU C2 C3 sing Y N 13 1TU F8 C6 sing N N 14 1TU C6 C5 doub Y N 15 1TU C3 C4 doub Y N 16 1TU C5 C4 sing Y N 17 1TU C5 O9 sing N N 18 1TU C4 F7 sing N N 19 1TU C1 H1 sing N N 20 1TU C3 H2 sing N N 21 1TU C10 H3 sing N N 22 1TU C10 H4 sing N N 23 1TU C16 H6 sing N N 24 1TU C16 H7 sing N N 25 1TU C16 H8 sing N N 26 1TU C17 H9 sing N N 27 1TU C17 H10 sing N N 28 1TU C17 H11 sing N N 29 1TU O9 H12 sing N N 30 1TU O18 H5 sing N N 31 A OP3 P sing N N 32 A OP3 HOP3 sing N N 33 A P OP1 doub N N 34 A P OP2 sing N N 35 A P "O5'" sing N N 36 A OP2 HOP2 sing N N 37 A "O5'" "C5'" sing N N 38 A "C5'" "C4'" sing N N 39 A "C5'" "H5'" sing N N 40 A "C5'" "H5''" sing N N 41 A "C4'" "O4'" sing N N 42 A "C4'" "C3'" sing N N 43 A "C4'" "H4'" sing N N 44 A "O4'" "C1'" sing N N 45 A "C3'" "O3'" sing N N 46 A "C3'" "C2'" sing N N 47 A "C3'" "H3'" sing N N 48 A "O3'" "HO3'" sing N N 49 A "C2'" "O2'" sing N N 50 A "C2'" "C1'" sing N N 51 A "C2'" "H2'" sing N N 52 A "O2'" "HO2'" sing N N 53 A "C1'" N9 sing N N 54 A "C1'" "H1'" sing N N 55 A N9 C8 sing Y N 56 A N9 C4 sing Y N 57 A C8 N7 doub Y N 58 A C8 H8 sing N N 59 A N7 C5 sing Y N 60 A C5 C6 sing Y N 61 A C5 C4 doub Y N 62 A C6 N6 sing N N 63 A C6 N1 doub Y N 64 A N6 H61 sing N N 65 A N6 H62 sing N N 66 A N1 C2 sing Y N 67 A C2 N3 doub Y N 68 A C2 H2 sing N N 69 A N3 C4 sing Y N 70 C OP3 P sing N N 71 C OP3 HOP3 sing N N 72 C P OP1 doub N N 73 C P OP2 sing N N 74 C P "O5'" sing N N 75 C OP2 HOP2 sing N N 76 C "O5'" "C5'" sing N N 77 C "C5'" "C4'" sing N N 78 C "C5'" "H5'" sing N N 79 C "C5'" "H5''" sing N N 80 C "C4'" "O4'" sing N N 81 C "C4'" "C3'" sing N N 82 C "C4'" "H4'" sing N N 83 C "O4'" "C1'" sing N N 84 C "C3'" "O3'" sing N N 85 C "C3'" "C2'" sing N N 86 C "C3'" "H3'" sing N N 87 C "O3'" "HO3'" sing N N 88 C "C2'" "O2'" sing N N 89 C "C2'" "C1'" sing N N 90 C "C2'" "H2'" sing N N 91 C "O2'" "HO2'" sing N N 92 C "C1'" N1 sing N N 93 C "C1'" "H1'" sing N N 94 C N1 C2 sing N N 95 C N1 C6 sing N N 96 C C2 O2 doub N N 97 C C2 N3 sing N N 98 C N3 C4 doub N N 99 C C4 N4 sing N N 100 C C4 C5 sing N N 101 C N4 H41 sing N N 102 C N4 H42 sing N N 103 C C5 C6 doub N N 104 C C5 H5 sing N N 105 C C6 H6 sing N N 106 G OP3 P sing N N 107 G OP3 HOP3 sing N N 108 G P OP1 doub N N 109 G P OP2 sing N N 110 G P "O5'" sing N N 111 G OP2 HOP2 sing N N 112 G "O5'" "C5'" sing N N 113 G "C5'" "C4'" sing N N 114 G "C5'" "H5'" sing N N 115 G "C5'" "H5''" sing N N 116 G "C4'" "O4'" sing N N 117 G "C4'" "C3'" sing N N 118 G "C4'" "H4'" sing N N 119 G "O4'" "C1'" sing N N 120 G "C3'" "O3'" sing N N 121 G "C3'" "C2'" sing N N 122 G "C3'" "H3'" sing N N 123 G "O3'" "HO3'" sing N N 124 G "C2'" "O2'" sing N N 125 G "C2'" "C1'" sing N N 126 G "C2'" "H2'" sing N N 127 G "O2'" "HO2'" sing N N 128 G "C1'" N9 sing N N 129 G "C1'" "H1'" sing N N 130 G N9 C8 sing Y N 131 G N9 C4 sing Y N 132 G C8 N7 doub Y N 133 G C8 H8 sing N N 134 G N7 C5 sing Y N 135 G C5 C6 sing N N 136 G C5 C4 doub Y N 137 G C6 O6 doub N N 138 G C6 N1 sing N N 139 G N1 C2 sing N N 140 G N1 H1 sing N N 141 G C2 N2 sing N N 142 G C2 N3 doub N N 143 G N2 H21 sing N N 144 G N2 H22 sing N N 145 G N3 C4 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 SPM N1 C2 sing N N 149 SPM N1 HN11 sing N N 150 SPM N1 HN12 sing N N 151 SPM C2 C3 sing N N 152 SPM C2 H21 sing N N 153 SPM C2 H22 sing N N 154 SPM C3 C4 sing N N 155 SPM C3 H31 sing N N 156 SPM C3 H32 sing N N 157 SPM C4 N5 sing N N 158 SPM C4 H41 sing N N 159 SPM C4 H42 sing N N 160 SPM N5 C6 sing N N 161 SPM N5 HN5 sing N N 162 SPM C6 C7 sing N N 163 SPM C6 H61 sing N N 164 SPM C6 H62 sing N N 165 SPM C7 C8 sing N N 166 SPM C7 H71 sing N N 167 SPM C7 H72 sing N N 168 SPM C8 C9 sing N N 169 SPM C8 H81 sing N N 170 SPM C8 H82 sing N N 171 SPM C9 N10 sing N N 172 SPM C9 H91 sing N N 173 SPM C9 H92 sing N N 174 SPM N10 C11 sing N N 175 SPM N10 HN0 sing N N 176 SPM C11 C12 sing N N 177 SPM C11 H111 sing N N 178 SPM C11 H112 sing N N 179 SPM C12 C13 sing N N 180 SPM C12 H121 sing N N 181 SPM C12 H122 sing N N 182 SPM C13 N14 sing N N 183 SPM C13 H131 sing N N 184 SPM C13 H132 sing N N 185 SPM N14 HN41 sing N N 186 SPM N14 HN42 sing N N 187 U OP3 P sing N N 188 U OP3 HOP3 sing N N 189 U P OP1 doub N N 190 U P OP2 sing N N 191 U P "O5'" sing N N 192 U OP2 HOP2 sing N N 193 U "O5'" "C5'" sing N N 194 U "C5'" "C4'" sing N N 195 U "C5'" "H5'" sing N N 196 U "C5'" "H5''" sing N N 197 U "C4'" "O4'" sing N N 198 U "C4'" "C3'" sing N N 199 U "C4'" "H4'" sing N N 200 U "O4'" "C1'" sing N N 201 U "C3'" "O3'" sing N N 202 U "C3'" "C2'" sing N N 203 U "C3'" "H3'" sing N N 204 U "O3'" "HO3'" sing N N 205 U "C2'" "O2'" sing N N 206 U "C2'" "C1'" sing N N 207 U "C2'" "H2'" sing N N 208 U "O2'" "HO2'" sing N N 209 U "C1'" N1 sing N N 210 U "C1'" "H1'" sing N N 211 U N1 C2 sing N N 212 U N1 C6 sing N N 213 U C2 O2 doub N N 214 U C2 N3 sing N N 215 U N3 C4 sing N N 216 U N3 H3 sing N N 217 U C4 O4 doub N N 218 U C4 C5 sing N N 219 U C5 C6 doub N N 220 U C5 H5 sing N N 221 U C6 H6 sing N N 222 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5OB3 'double helix' 5OB3 'a-form double helix' 5OB3 'parallel strands' 5OB3 tetraloop 5OB3 'bulge loop' 5OB3 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 69 1_555 0.068 0.311 -0.596 -2.604 -24.590 -24.597 1 A_G1:C69_A A 1 ? A 69 ? ? 1 1 A G 2 1_555 A C 68 1_555 -0.364 -0.166 -0.184 -0.184 -9.474 1.512 2 A_G2:C68_A A 2 ? A 68 ? 19 1 1 A G 3 1_555 A C 67 1_555 -0.370 0.008 -0.398 -2.511 -14.593 -4.902 3 A_G3:C67_A A 3 ? A 67 ? 19 1 1 A A 4 1_555 A U 66 1_555 0.666 -0.354 0.242 5.237 -9.443 -0.262 4 A_A4:U66_A A 4 ? A 66 ? 20 1 1 A G 5 1_555 A C 65 1_555 0.402 -0.376 0.174 1.832 -14.240 -8.639 5 A_G5:C65_A A 5 ? A 65 ? 19 1 1 A U 6 1_555 A A 64 1_555 -0.209 -0.018 0.138 -2.156 -9.348 2.205 6 A_U6:A64_A A 6 ? A 64 ? 20 1 1 A A 7 1_555 A U 63 1_555 0.474 -0.252 0.192 2.582 -12.814 -3.399 7 A_A7:U63_A A 7 ? A 63 ? 20 1 1 A C 8 1_555 A G 62 1_555 0.020 -0.160 -0.644 13.623 -12.797 -1.210 8 A_C8:G62_A A 8 ? A 62 ? 19 1 1 A G 9 1_555 A C 61 1_555 -0.174 -0.199 0.166 0.827 -1.356 -1.056 9 A_G9:C61_A A 9 ? A 61 ? 19 1 1 A G 10 1_555 A C 60 1_555 -0.063 -0.205 0.015 -2.221 -8.335 6.603 10 A_G10:C60_A A 10 ? A 60 ? 19 1 1 A U 11 1_555 A U 59 1_555 2.033 -1.942 0.446 -7.196 -13.232 2.399 11 A_U11:U59_A A 11 ? A 59 ? 16 1 1 A G 12 1_555 A C 58 1_555 -0.262 -0.101 -0.271 -27.181 -21.176 -1.000 12 A_G12:C58_A A 12 ? A 58 ? 19 1 1 A A 13 1_555 A G 57 1_555 0.197 1.489 -0.274 -23.818 -0.785 -24.455 13 A_A13:G57_A A 13 ? A 57 ? 8 1 1 A G 14 1_555 A G 56 1_555 4.920 1.101 0.163 -7.886 5.237 -45.886 14 A_G14:G56_A A 14 ? A 56 ? ? 1 1 A U 47 1_555 A U 54 1_555 -1.459 -4.261 1.149 -13.064 18.481 -136.672 15 A_U47:U54_A A 47 ? A 54 ? ? ? 1 A G 15 1_555 A G 49 1_555 -1.675 -3.459 -0.511 0.450 15.453 88.196 16 A_G15:G49_A A 15 ? A 49 ? 6 3 1 A G 16 1_555 A G 46 1_555 -1.660 -3.298 -0.266 -1.374 1.433 90.218 17 A_G16:G46_A A 16 ? A 46 ? 6 3 1 A G 51 1_555 A G 20 1_555 -1.530 -3.312 0.085 0.309 5.380 89.667 18 A_G51:G20_A A 51 ? A 20 ? 6 3 1 A U 22 1_555 A A 45 1_555 -0.110 -0.087 -0.126 -1.538 3.166 -1.972 19 A_U22:A45_A A 22 ? A 45 ? 20 1 1 A C 23 1_555 A G 44 1_555 0.242 -0.188 0.002 7.140 -9.079 1.709 20 A_C23:G44_A A 23 ? A 44 ? 19 1 1 A C 24 1_555 A G 41 1_555 0.281 -0.106 0.320 0.892 -5.861 -1.535 21 A_C24:G41_A A 24 ? A 41 ? 19 1 1 A A 25 1_555 A U 40 1_555 -0.168 -0.152 0.078 4.782 -13.775 5.192 22 A_A25:U40_A A 25 ? A 40 ? 20 1 1 A G 26 1_555 A C 39 1_555 -0.234 -0.327 0.174 1.687 -17.182 0.937 23 A_G26:C39_A A 26 ? A 39 ? 19 1 1 A U 27 1_555 A A 38 1_555 0.181 -0.199 0.290 -5.051 -15.999 2.067 24 A_U27:A38_A A 27 ? A 38 ? 20 1 1 A A 28 1_555 A U 37 1_555 0.156 -0.245 0.168 -0.698 -4.719 -1.303 25 A_A28:U37_A A 28 ? A 37 ? 20 1 1 A G 29 1_555 A C 36 1_555 -0.470 -0.232 0.018 3.317 -7.022 1.063 26 A_G29:C36_A A 29 ? A 36 ? 19 1 1 A G 30 1_555 A C 35 1_555 -0.274 -0.167 -0.119 -5.479 -5.450 0.800 27 A_G30:C35_A A 30 ? A 35 ? 19 1 1 A U 31 1_555 A G 34 1_555 1.119 -5.068 0.099 -18.673 6.107 -105.955 28 A_U31:G34_A A 31 ? A 34 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 69 1_555 A G 2 1_555 A C 68 1_555 0.271 -0.998 3.208 -8.091 1.014 30.306 -2.031 -1.973 3.003 1.897 15.135 31.359 1 AA_G1G2:C68C69_AA A 1 ? A 69 ? A 2 ? A 68 ? 1 A G 2 1_555 A C 68 1_555 A G 3 1_555 A C 67 1_555 -0.285 -2.323 3.420 0.236 8.038 28.328 -6.207 0.610 2.671 16.020 -0.470 29.425 2 AA_G2G3:C67C68_AA A 2 ? A 68 ? A 3 ? A 67 ? 1 A G 3 1_555 A C 67 1_555 A A 4 1_555 A U 66 1_555 -0.303 -1.816 3.015 -6.004 5.690 39.789 -3.182 -0.159 2.756 8.252 8.708 40.605 3 AA_G3A4:U66C67_AA A 3 ? A 67 ? A 4 ? A 66 ? 1 A A 4 1_555 A U 66 1_555 A G 5 1_555 A C 65 1_555 -0.413 -1.636 3.347 0.176 6.740 30.572 -4.269 0.798 2.926 12.590 -0.328 31.289 4 AA_A4G5:C65U66_AA A 4 ? A 66 ? A 5 ? A 65 ? 1 A G 5 1_555 A C 65 1_555 A U 6 1_555 A A 64 1_555 0.416 -1.618 3.351 2.859 4.621 28.561 -4.231 -0.207 3.083 9.261 -5.730 29.063 5 AA_G5U6:A64C65_AA A 5 ? A 65 ? A 6 ? A 64 ? 1 A U 6 1_555 A A 64 1_555 A A 7 1_555 A U 63 1_555 -0.022 -1.343 2.906 -1.349 12.165 37.530 -3.184 -0.100 2.374 18.321 2.032 39.407 6 AA_U6A7:U63A64_AA A 6 ? A 64 ? A 7 ? A 63 ? 1 A A 7 1_555 A U 63 1_555 A C 8 1_555 A G 62 1_555 0.019 -1.389 2.907 7.935 4.334 29.463 -3.345 1.298 2.598 8.280 -15.158 30.790 7 AA_A7C8:G62U63_AA A 7 ? A 63 ? A 8 ? A 62 ? 1 A C 8 1_555 A G 62 1_555 A G 9 1_555 A C 61 1_555 0.045 -1.580 3.548 -5.757 11.805 28.327 -5.175 -1.175 2.637 22.646 11.045 31.167 8 AA_C8G9:C61G62_AA A 8 ? A 62 ? A 9 ? A 61 ? 1 A G 9 1_555 A C 61 1_555 A G 10 1_555 A C 60 1_555 0.693 -1.524 3.228 0.056 8.783 31.209 -4.165 -1.234 2.712 15.934 -0.101 32.392 9 AA_G9G10:C60C61_AA A 9 ? A 61 ? A 10 ? A 60 ? 1 A G 10 1_555 A C 60 1_555 A U 11 1_555 A U 59 1_555 0.106 -1.033 3.462 -2.328 0.942 44.819 -1.442 -0.361 3.431 1.235 3.050 44.886 10 AA_G10U11:U59C60_AA A 10 ? A 60 ? A 11 ? A 59 ? 1 A U 11 1_555 A U 59 1_555 A G 12 1_555 A C 58 1_555 -0.216 -2.211 3.462 11.129 8.761 29.132 -5.454 2.273 2.468 16.260 -20.655 32.325 11 AA_U11G12:C58U59_AA A 11 ? A 59 ? A 12 ? A 58 ? 1 A G 12 1_555 A C 58 1_555 A A 13 1_555 A G 57 1_555 -1.020 -1.752 3.057 4.213 3.502 29.435 -4.032 2.745 2.667 6.819 -8.202 29.929 12 AA_G12A13:G57C58_AA A 12 ? A 58 ? A 13 ? A 57 ? 1 A A 13 1_555 A G 57 1_555 A G 14 1_555 A G 56 1_555 -0.805 -1.778 2.976 3.988 0.582 41.660 -2.544 1.501 2.867 0.816 -5.591 41.846 13 AA_A13G14:G56G57_AA A 13 ? A 57 ? A 14 ? A 56 ? 1 A G 14 1_555 A G 56 1_555 A U 47 1_555 A U 54 1_555 4.187 0.003 -4.658 -110.991 -132.521 46.463 -2.266 -0.198 -4.313 -67.916 56.883 173.440 14 AA_G14U47:U54G56_AA A 14 ? A 56 ? A 47 ? A 54 ? 1 A U 47 1_555 A U 54 1_555 A G 15 1_555 A G 49 1_555 3.318 -2.353 0.823 16.820 172.451 -90.119 0.595 1.717 2.008 -87.203 8.505 -175.247 15 AA_U47G15:G49U54_AA A 47 ? A 54 ? A 15 ? A 49 ? 1 A G 15 1_555 A G 49 1_555 A G 16 1_555 A G 46 1_555 -0.667 -0.531 3.323 -1.133 0.341 35.211 -0.929 0.931 3.337 0.563 1.873 35.230 16 AA_G15G16:G46G49_AA A 15 ? A 49 ? A 16 ? A 46 ? 1 A G 16 1_555 A G 46 1_555 A G 51 1_555 A G 20 1_555 -1.762 -3.325 0.430 1.550 -8.734 179.855 -1.662 0.881 0.430 -4.367 -0.775 179.855 17 AA_G16G51:G20G46_AA A 16 ? A 46 ? A 51 ? A 20 ? 1 A U 22 1_555 A A 45 1_555 A C 23 1_555 A G 44 1_555 1.069 -1.851 3.033 -1.823 5.215 33.918 -3.850 -2.060 2.668 8.866 3.100 34.352 18 AA_U22C23:G44A45_AA A 22 ? A 45 ? A 23 ? A 44 ? 1 A C 23 1_555 A G 44 1_555 A C 24 1_555 A G 41 1_555 0.531 -1.978 3.374 -2.969 2.045 40.361 -3.088 -1.103 3.228 2.957 4.292 40.515 19 AA_C23C24:G41G44_AA A 23 ? A 44 ? A 24 ? A 41 ? 1 A C 24 1_555 A G 41 1_555 A A 25 1_555 A U 40 1_555 -0.269 -1.340 3.014 -0.669 9.940 29.374 -4.154 0.393 2.446 18.928 1.274 30.982 20 AA_C24A25:U40G41_AA A 24 ? A 41 ? A 25 ? A 40 ? 1 A A 25 1_555 A U 40 1_555 A G 26 1_555 A C 39 1_555 -0.479 -1.221 3.245 -2.796 8.437 33.312 -3.315 0.394 2.889 14.402 4.772 34.445 21 AA_A25G26:C39U40_AA A 25 ? A 40 ? A 26 ? A 39 ? 1 A G 26 1_555 A C 39 1_555 A U 27 1_555 A A 38 1_555 0.239 -1.306 3.320 0.148 11.419 35.254 -3.528 -0.357 2.779 18.271 -0.236 37.002 22 AA_G26U27:A38C39_AA A 26 ? A 39 ? A 27 ? A 38 ? 1 A U 27 1_555 A A 38 1_555 A A 28 1_555 A U 37 1_555 0.080 -1.431 3.003 0.032 6.732 32.733 -3.466 -0.135 2.664 11.789 -0.056 33.399 23 AA_U27A28:U37A38_AA A 27 ? A 38 ? A 28 ? A 37 ? 1 A A 28 1_555 A U 37 1_555 A G 29 1_555 A C 36 1_555 0.404 -2.021 3.124 2.726 3.630 24.627 -5.650 -0.189 2.828 8.420 -6.323 25.035 24 AA_A28G29:C36U37_AA A 28 ? A 37 ? A 29 ? A 36 ? 1 A G 29 1_555 A C 36 1_555 A G 30 1_555 A C 35 1_555 0.591 -2.139 3.327 0.818 7.264 32.873 -4.822 -0.893 2.817 12.642 -1.423 33.654 25 AA_G29G30:C35C36_AA A 29 ? A 36 ? A 30 ? A 35 ? 1 A G 30 1_555 A C 35 1_555 A U 31 1_555 A G 34 1_555 -1.775 -0.429 3.470 11.431 5.357 93.878 -0.392 1.421 3.269 3.653 -7.796 94.525 26 AA_G30U31:G34C35_AA A 30 ? A 35 ? A 31 ? A 34 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4Q9R _pdbx_initial_refinement_model.details 4q9r.pdb # _atom_sites.entry_id 5OB3 _atom_sites.fract_transf_matrix[1][1] 0.006636 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000215 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020619 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033240 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F H K N O P # loop_