HEADER OXIDOREDUCTASE 10-AUG-17 5OPJ TITLE BETA-L-ARABINOFURANOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHAMNOGALACTURONAN LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: SAMN02910322_03495; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA ARBINOFURANOSIDASE, ARABINAN, B THETA, RHAMNOGALACTURONAN I, KEYWDS 2 PECTIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BASLE,A.S.LUIS,H.J.GILBERT REVDAT 4 29-JUL-20 5OPJ 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 04-SEP-19 5OPJ 1 TITLE REVDAT 2 12-DEC-18 5OPJ 1 JRNL REVDAT 1 28-FEB-18 5OPJ 0 JRNL AUTH A.S.LUIS,J.BRIGGS,X.ZHANG,B.FARNELL,D.NDEH,A.LABOUREL, JRNL AUTH 2 A.BASLE,A.CARTMELL,N.TERRAPON,K.STOTT,E.C.LOWE,R.MCLEAN, JRNL AUTH 3 K.SHEARER,J.SCHUCKEL,I.VENDITTO,M.C.RALET,B.HENRISSAT, JRNL AUTH 4 E.C.MARTENS,S.C.MOSIMANN,D.W.ABBOTT,H.J.GILBERT JRNL TITL DIETARY PECTIC GLYCANS ARE DEGRADED BY COORDINATED ENZYME JRNL TITL 2 PATHWAYS IN HUMAN COLONIC BACTEROIDES. JRNL REF NAT MICROBIOL V. 3 210 2018 JRNL REFN ESSN 2058-5276 JRNL PMID 29255254 JRNL DOI 10.1038/S41564-017-0079-1 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.39000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : 2.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6310 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5633 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8564 ; 1.546 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13063 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 772 ; 6.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;36.021 ;23.836 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 979 ;12.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.641 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 927 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7058 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1325 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3091 ; 1.928 ; 3.353 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3090 ; 1.927 ; 3.353 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3859 ; 2.661 ; 5.018 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3860 ; 2.661 ; 5.018 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3219 ; 2.661 ; 3.590 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3219 ; 2.661 ; 3.589 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4705 ; 3.922 ; 5.276 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7033 ; 4.973 ;38.964 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7034 ; 4.973 ;38.965 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5OPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1200006153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56151 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 28.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 72.37 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 74.92 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM FORMATE, 20% PEG 3350, REMARK 280 500 MM L-ARABINOSE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.92000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.10500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.88000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.96000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 140.88000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.96000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 PHE A 6 REMARK 465 ILE A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 ILE A 11 REMARK 465 ILE A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 GLY A 17 REMARK 465 LYS A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 THR A 21 REMARK 465 ASN A 22 REMARK 465 GLY A 494 REMARK 465 ASN A 495 REMARK 465 SER A 496 REMARK 465 LYS A 497 REMARK 465 GLY A 498 REMARK 465 LYS A 629 REMARK 465 SER A 630 REMARK 465 LYS A 631 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 26 CG CD OE1 NE2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ASN A 289 CG OD1 ND2 REMARK 470 GLU A 411 CG CD OE1 OE2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 GLU A 491 CG CD OE1 OE2 REMARK 470 TYR A 499 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 500 CG CD OE1 OE2 REMARK 470 LEU A 509 CG CD1 CD2 REMARK 470 ILE A 512 CG1 CG2 CD1 REMARK 470 GLN A 513 CG CD OE1 NE2 REMARK 470 LYS A 539 CG CD CE NZ REMARK 470 GLN A 628 CG CD OE1 NE2 REMARK 470 LYS A 723 CG CD CE NZ REMARK 470 LYS A 725 CG CD CE NZ REMARK 470 GLU A 750 CG CD OE1 OE2 REMARK 470 LYS A 760 CG CD CE NZ REMARK 470 LYS A 763 CG CD CE NZ REMARK 470 ARG A 775 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 778 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 474 OD1 ASP A 476 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 87 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 488 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 488 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 712 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 79 -149.77 -89.46 REMARK 500 ASN A 80 -130.91 57.62 REMARK 500 ASP A 87 115.25 -28.73 REMARK 500 VAL A 163 58.40 31.13 REMARK 500 SER A 317 152.97 89.74 REMARK 500 ASN A 364 18.30 54.66 REMARK 500 GLN A 436 84.15 -151.37 REMARK 500 GLN A 437 -110.77 59.12 REMARK 500 VAL A 648 -62.12 -104.67 REMARK 500 THR A 667 -75.61 -118.82 REMARK 500 ASN A 748 50.98 37.98 REMARK 500 ASP A 789 75.52 -106.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 339 OE1 REMARK 620 2 CYS A 341 SG 110.2 REMARK 620 3 CYS A 416 SG 98.5 116.0 REMARK 620 4 CYS A 417 SG 113.0 100.5 119.1 REMARK 620 N 1 2 3 DBREF1 5OPJ A 1 804 UNP A0A1H7THV3_BACT4 DBREF2 5OPJ A A0A1H7THV3 1 802 SEQADV 5OPJ ARG A 670 UNP A0A1H7THV GLN 668 CONFLICT SEQADV 5OPJ GLU A 674 UNP A0A1H7THV ASP 672 CONFLICT SEQRES 1 A 802 MSE LYS THR THR SER PHE ILE LEU ALA LEU ILE ILE SER SEQRES 2 A 802 ILE SER ILE GLY LYS ALA GLN THR ASN HIS GLN VAL SER SEQRES 3 A 802 TYR PHE SER LEU GLN ASP VAL LYS LEU LEU SER SER PRO SEQRES 4 A 802 PHE LEU GLN ALA GLN GLN THR ASP LEU HIS TYR ILE LEU SEQRES 5 A 802 ALA LEU ASP PRO ASP ARG LEU SER ALA PRO PHE LEU ARG SEQRES 6 A 802 GLU ALA GLY LEU THR PRO LYS ALA PRO SER TYR THR ASN SEQRES 7 A 802 TRP GLU ASN THR GLY LEU ASP GLY HIS ILE GLY GLY HIS SEQRES 8 A 802 TYR LEU SER ALA LEU SER MSE MSE TYR ALA ALA THR GLY SEQRES 9 A 802 ASP THR ALA ILE TYR HIS ARG LEU ASN TYR MSE LEU ASN SEQRES 10 A 802 GLU LEU HIS ARG ALA GLN GLN ALA VAL GLY THR GLY PHE SEQRES 11 A 802 ILE GLY GLY THR PRO GLY SER LEU GLN LEU TRP LYS GLU SEQRES 12 A 802 ILE LYS ALA GLY ASP ILE ARG ALA GLY GLY PHE SER LEU SEQRES 13 A 802 ASN GLY LYS TRP VAL PRO LEU TYR ASN ILE HIS LYS THR SEQRES 14 A 802 TYR ALA GLY LEU ARG ASP ALA TYR LEU TYR ALA HIS SER SEQRES 15 A 802 ASP LEU ALA ARG GLN MSE LEU ILE ASP LEU THR ASP TRP SEQRES 16 A 802 MSE ILE ASP ILE THR SER GLY LEU SER ASP ASN GLN MSE SEQRES 17 A 802 GLN ASP MSE LEU ARG SER GLU HIS GLY GLY LEU ASN GLU SEQRES 18 A 802 THR PHE ALA ASP VAL ALA GLU ILE THR GLY ASP LYS LYS SEQRES 19 A 802 TYR LEU LYS LEU ALA ARG ARG PHE SER HIS LYS VAL ILE SEQRES 20 A 802 LEU ASP PRO LEU ILE LYS ASN GLU ASP ARG LEU ASN GLY SEQRES 21 A 802 MSE HIS ALA ASN THR GLN ILE PRO LYS VAL ILE GLY TYR SEQRES 22 A 802 LYS ARG VAL ALA GLU VAL SER LYS ASN ASP LYS ASP TRP SEQRES 23 A 802 ASN HIS ALA ALA GLU TRP ASP HIS ALA ALA ARG PHE PHE SEQRES 24 A 802 TRP ASN THR VAL VAL ASN HIS ARG SER VAL CYS ILE GLY SEQRES 25 A 802 GLY ASN SER VAL ARG GLU HIS PHE HIS PRO SER ASP ASN SEQRES 26 A 802 PHE THR SER MSE LEU ASN ASP VAL GLN GLY PRO GLU THR SEQRES 27 A 802 CYS ASN THR TYR ASN MSE LEU ARG LEU THR LYS MSE LEU SEQRES 28 A 802 TYR GLN ASN SER GLY ASP VAL ASP ASN SER ASN LYS PRO SEQRES 29 A 802 ASP PRO ARG TYR VAL ASP TYR TYR GLU ARG ALA LEU TYR SEQRES 30 A 802 ASN HIS ILE LEU SER SER GLN GLU PRO ASP LYS GLY GLY SEQRES 31 A 802 PHE VAL TYR PHE THR PRO MSE ARG PRO GLY HIS TYR ARG SEQRES 32 A 802 VAL TYR SER GLN PRO GLU THR SER MSE TRP CYS CYS VAL SEQRES 33 A 802 GLY SER GLY LEU GLU ASN HIS THR LYS TYR GLY GLU PHE SEQRES 34 A 802 ILE TYR ALA HIS GLN GLN ASP THR LEU TYR VAL ASN LEU SEQRES 35 A 802 PHE ILE PRO SER GLN LEU ASN TRP LYS GLU GLN GLY VAL SEQRES 36 A 802 THR LEU THR GLN GLU THR LEU PHE PRO ASP ASP GLU LYS SEQRES 37 A 802 VAL THR LEU ARG ILE ASP LYS ALA ALA LYS LYS ASN LEU SEQRES 38 A 802 THR LEU MSE ILE ARG ILE PRO GLU TRP ALA GLY ASN SER SEQRES 39 A 802 LYS GLY TYR GLU ILE THR ILE ASN GLY LYS LYS HIS LEU SEQRES 40 A 802 SER ASP ILE GLN THR GLY ALA SER THR TYR LEU PRO ILE SEQRES 41 A 802 ARG ARG LYS TRP LYS LYS GLY ASP MSE ILE THR PHE HIS SEQRES 42 A 802 LEU PRO MSE LYS VAL SER LEU GLU GLN ILE PRO ASP LYS SEQRES 43 A 802 LYS ASP TYR TYR ALA PHE LEU TYR GLY PRO ILE VAL LEU SEQRES 44 A 802 ALA THR SER THR GLY THR GLU ASN LEU ASP GLY ILE TYR SEQRES 45 A 802 ALA ASP ASP SER ARG GLY GLY HIS ILE ALA HIS GLY ARG SEQRES 46 A 802 GLN THR PRO LEU GLN GLU ILE PRO MSE LEU ILE GLY ASN SEQRES 47 A 802 PRO ASP SER ILE ARG HIS SER LEU HIS LYS LEU SER GLY SEQRES 48 A 802 SER LYS LEU ALA PHE SER TYR ASP GLY ASN VAL TYR PRO SEQRES 49 A 802 THR GLN LYS SER LYS SER LEU GLU LEU ILE PRO PHE PHE SEQRES 50 A 802 ARG LEU HIS ASN SER ARG TYR ALA VAL TYR PHE ARG GLN SEQRES 51 A 802 ALA SER GLU GLU GLN PHE LYS THR ILE GLN GLU GLU MSE SEQRES 52 A 802 ALA THR ALA GLU ARG LYS ALA THR GLU LEU ALA ASN ARG SEQRES 53 A 802 THR VAL ASP LEU ILE PHE PRO GLY GLU GLN GLN PRO GLU SEQRES 54 A 802 SER ASP HIS SER ILE GLN TYR GLU ALA SER GLU THR GLY SEQRES 55 A 802 THR HIS LYS ASP ARG HIS PHE ARG ARG ALA LYS GLY TRP SEQRES 56 A 802 PHE SER TYR ASN LEU LYS ILE LYS GLU GLU ALA SER GLN SEQRES 57 A 802 LEU MSE ILE THR VAL ARG GLN GLU ASP ARG ASN LYS ALA SEQRES 58 A 802 VAL ILE LEU LEU ASN ASN GLU LYS LEU THR VAL HIS PRO SEQRES 59 A 802 THR VAL SER LYS ALA ASP LYS ASP GLY PHE ILE ARG LEU SEQRES 60 A 802 CYS TYR LEU LEU PRO ARG LYS LEU LYS VAL GLY SER CYS SEQRES 61 A 802 GLU ILE LEU PHE LYS PRO ASP GLY THR GLU TRP THR SER SEQRES 62 A 802 ALA VAL TYR GLU VAL ARG LEU LEU LYS MODRES 5OPJ MSE A 100 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 101 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 117 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 190 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 198 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 210 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 213 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 263 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 331 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 346 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 352 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 399 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 414 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 486 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 531 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 538 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 596 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 665 MET MODIFIED RESIDUE MODRES 5OPJ MSE A 732 MET MODIFIED RESIDUE HET MSE A 100 8 HET MSE A 101 8 HET MSE A 117 8 HET MSE A 190 8 HET MSE A 198 8 HET MSE A 210 8 HET MSE A 213 8 HET MSE A 263 8 HET MSE A 331 8 HET MSE A 346 8 HET MSE A 352 8 HET MSE A 399 8 HET MSE A 414 8 HET MSE A 486 8 HET MSE A 531 8 HET MSE A 538 8 HET MSE A 596 8 HET MSE A 665 8 HET MSE A 732 8 HET AHR A 901 10 HET ZN A 902 1 HETNAM MSE SELENOMETHIONINE HETNAM AHR ALPHA-L-ARABINOFURANOSE HETNAM ZN ZINC ION FORMUL 1 MSE 19(C5 H11 N O2 SE) FORMUL 2 AHR C5 H10 O5 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *355(H2 O) HELIX 1 AA1 SER A 31 GLN A 33 5 3 HELIX 2 AA2 SER A 40 LEU A 56 1 17 HELIX 3 AA3 ASP A 57 ALA A 69 1 13 HELIX 4 AA4 THR A 79 ASN A 83 5 5 HELIX 5 AA5 GLY A 88 GLY A 106 1 19 HELIX 6 AA6 ASP A 107 GLY A 129 1 23 HELIX 7 AA7 GLY A 138 ALA A 148 1 11 HELIX 8 AA8 VAL A 163 HIS A 183 1 21 HELIX 9 AA9 SER A 184 SER A 203 1 20 HELIX 10 AB1 SER A 206 LEU A 214 1 9 HELIX 11 AB2 GLY A 220 GLY A 233 1 14 HELIX 12 AB3 LYS A 235 PHE A 244 1 10 HELIX 13 AB4 HIS A 246 LYS A 255 1 10 HELIX 14 AB5 HIS A 264 SER A 282 1 19 HELIX 15 AB6 HIS A 290 SER A 310 1 21 HELIX 16 AB7 PHE A 328 ASP A 334 1 7 HELIX 17 AB8 GLU A 339 ASN A 356 1 18 HELIX 18 AB9 ASN A 356 ASP A 361 1 6 HELIX 19 AC1 PRO A 368 HIS A 381 1 14 HELIX 20 AC2 ILE A 382 GLN A 386 5 5 HELIX 21 AC3 TRP A 415 HIS A 425 1 11 HELIX 22 AC4 THR A 426 PHE A 431 5 6 HELIX 23 AC5 LYS A 453 GLY A 456 5 4 HELIX 24 AC6 PRO A 590 ILE A 594 5 5 HELIX 25 AC7 ASN A 600 SER A 607 1 8 HELIX 26 AC8 PHE A 639 LEU A 641 5 3 HELIX 27 AC9 GLN A 657 THR A 667 1 11 HELIX 28 AD1 THR A 667 ARG A 678 1 12 HELIX 29 AD2 GLU A 687 HIS A 694 1 8 SHEET 1 AA1 7 VAL A 35 LEU A 37 0 SHEET 2 AA1 7 SER A 448 TRP A 452 -1 O GLN A 449 N LYS A 36 SHEET 3 AA1 7 VAL A 457 THR A 463 -1 O GLN A 461 N SER A 448 SHEET 4 AA1 7 LYS A 470 LYS A 477 -1 O THR A 472 N GLU A 462 SHEET 5 AA1 7 MSE A 531 HIS A 535 -1 O ILE A 532 N LEU A 473 SHEET 6 AA1 7 GLU A 500 ILE A 503 -1 N THR A 502 O THR A 533 SHEET 7 AA1 7 LYS A 506 LEU A 509 -1 O HIS A 508 N ILE A 501 SHEET 1 AA2 2 SER A 157 LEU A 158 0 SHEET 2 AA2 2 LYS A 161 TRP A 162 -1 O LYS A 161 N LEU A 158 SHEET 1 AA3 4 TYR A 433 GLN A 436 0 SHEET 2 AA3 4 THR A 439 VAL A 442 -1 O TYR A 441 N ALA A 434 SHEET 3 AA3 4 ASN A 482 ILE A 489 1 O MSE A 486 N LEU A 440 SHEET 4 AA3 4 THR A 518 LYS A 525 -1 O THR A 518 N ILE A 489 SHEET 1 AA4 6 VAL A 540 GLN A 544 0 SHEET 2 AA4 6 TYR A 551 TYR A 556 -1 O ALA A 553 N GLU A 543 SHEET 3 AA4 6 ILE A 559 GLY A 566 -1 O LEU A 561 N PHE A 554 SHEET 4 AA4 6 TYR A 649 ALA A 653 0 SHEET 5 AA4 6 MSE A 596 ILE A 598 1 N LEU A 597 O ARG A 651 SHEET 6 AA4 6 VAL A 624 TYR A 625 -1 O TYR A 625 N MSE A 596 SHEET 1 AA5 6 LEU A 608 LYS A 610 0 SHEET 2 AA5 6 PHE A 618 TYR A 620 -1 O SER A 619 N HIS A 609 SHEET 3 AA5 6 LEU A 633 PRO A 637 -1 O LEU A 635 N PHE A 618 SHEET 4 AA5 6 ILE A 559 GLY A 566 -1 N ALA A 562 O ILE A 636 SHEET 5 AA5 6 TYR A 551 TYR A 556 -1 N PHE A 554 O LEU A 561 SHEET 6 AA5 6 ARG A 645 ALA A 647 0 SHEET 1 AA6 5 THR A 679 ILE A 683 0 SHEET 2 AA6 5 GLU A 799 LEU A 803 -1 O VAL A 800 N ILE A 683 SHEET 3 AA6 5 ALA A 728 ARG A 736 -1 N MSE A 732 O ARG A 801 SHEET 4 AA6 5 PHE A 766 LEU A 777 -1 O TYR A 771 N LEU A 731 SHEET 5 AA6 5 THR A 757 VAL A 758 -1 N THR A 757 O CYS A 770 SHEET 1 AA7 5 GLN A 697 HIS A 706 0 SHEET 2 AA7 5 ARG A 709 ILE A 724 -1 O LYS A 715 N ALA A 700 SHEET 3 AA7 5 GLY A 780 PRO A 788 -1 O GLY A 780 N ILE A 724 SHEET 4 AA7 5 ALA A 743 LEU A 747 -1 N VAL A 744 O LYS A 787 SHEET 5 AA7 5 GLU A 750 LYS A 751 -1 O GLU A 750 N LEU A 747 LINK C SER A 99 N MSE A 100 1555 1555 1.34 LINK C MSE A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N TYR A 102 1555 1555 1.34 LINK C TYR A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N LEU A 118 1555 1555 1.33 LINK C GLN A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N LEU A 191 1555 1555 1.33 LINK C TRP A 197 N MSE A 198 1555 1555 1.35 LINK C MSE A 198 N ILE A 199 1555 1555 1.32 LINK C GLN A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N GLN A 211 1555 1555 1.33 LINK C ASP A 212 N MSE A 213 1555 1555 1.34 LINK C MSE A 213 N LEU A 214 1555 1555 1.33 LINK C GLY A 262 N MSE A 263 1555 1555 1.33 LINK C MSE A 263 N HIS A 264 1555 1555 1.33 LINK C SER A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N LEU A 332 1555 1555 1.33 LINK C ASN A 345 N MSE A 346 1555 1555 1.34 LINK C MSE A 346 N LEU A 347 1555 1555 1.32 LINK C LYS A 351 N MSE A 352 1555 1555 1.33 LINK C MSE A 352 N LEU A 353 1555 1555 1.33 LINK C PRO A 398 N MSE A 399 1555 1555 1.33 LINK C MSE A 399 N ARG A 400 1555 1555 1.33 LINK C SER A 413 N MSE A 414 1555 1555 1.33 LINK C MSE A 414 N TRP A 415 1555 1555 1.33 LINK C LEU A 485 N MSE A 486 1555 1555 1.34 LINK C MSE A 486 N ILE A 487 1555 1555 1.33 LINK C ASP A 530 N MSE A 531 1555 1555 1.33 LINK C MSE A 531 N ILE A 532 1555 1555 1.33 LINK C PRO A 537 N MSE A 538 1555 1555 1.33 LINK C MSE A 538 N LYS A 539 1555 1555 1.33 LINK C PRO A 595 N MSE A 596 1555 1555 1.34 LINK C MSE A 596 N LEU A 597 1555 1555 1.33 LINK C GLU A 664 N MSE A 665 1555 1555 1.33 LINK C MSE A 665 N ALA A 666 1555 1555 1.33 LINK C LEU A 731 N MSE A 732 1555 1555 1.33 LINK C MSE A 732 N ILE A 733 1555 1555 1.33 LINK OE1 GLU A 339 ZN ZN A 902 1555 1555 2.04 LINK SG CYS A 341 ZN ZN A 902 1555 1555 2.36 LINK SG CYS A 416 ZN ZN A 902 1555 1555 2.40 LINK SG CYS A 417 ZN ZN A 902 1555 1555 2.41 CISPEP 1 PHE A 465 PRO A 466 0 8.76 CISPEP 2 TYR A 625 PRO A 626 0 -6.45 CRYST1 96.210 96.210 187.840 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005324 0.00000