data_5SUU # _entry.id 5SUU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5SUU pdb_00005suu 10.2210/pdb5suu/pdb WWPDB D_1000223169 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-01-11 2 'Structure model' 1 1 2017-09-13 3 'Structure model' 1 2 2019-12-25 4 'Structure model' 1 3 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_validate_polymer_linkage 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' citation 7 4 'Structure model' citation_author 8 4 'Structure model' database_2 9 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 4 'Structure model' '_citation.country' 4 4 'Structure model' '_citation.journal_abbrev' 5 4 'Structure model' '_citation.journal_id_ASTM' 6 4 'Structure model' '_citation.journal_id_CSD' 7 4 'Structure model' '_citation.journal_id_ISSN' 8 4 'Structure model' '_citation.journal_volume' 9 4 'Structure model' '_citation.page_first' 10 4 'Structure model' '_citation.page_last' 11 4 'Structure model' '_citation.pdbx_database_id_DOI' 12 4 'Structure model' '_citation.pdbx_database_id_PubMed' 13 4 'Structure model' '_citation.title' 14 4 'Structure model' '_citation.year' 15 4 'Structure model' '_citation_author.identifier_ORCID' 16 4 'Structure model' '_database_2.pdbx_DOI' 17 4 'Structure model' '_database_2.pdbx_database_accession' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5SUU _pdbx_database_status.recvd_initial_deposition_date 2016-08-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5SUR unspecified PDB . 5SUS unspecified PDB . 5SUT unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kreutzer, A.G.' 1 'Spencer, R.K.' 2 'Nowick, J.S.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 139 _citation.language ? _citation.page_first 966 _citation.page_last 975 _citation.title 'Stabilization, Assembly, and Toxicity of Trimers Derived from A beta.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.6b11748 _citation.pdbx_database_id_PubMed 28001392 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kreutzer, A.G.' 1 ? primary 'Yoo, S.' 2 ? primary 'Spencer, R.K.' 3 ? primary 'Nowick, J.S.' 4 0000-0002-2273-1029 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '16mer A-beta peptide: ORN-CYS-VAL-PHE-PHE-CYS-GLU-ASP-ORN-ALA-ILE-ILE-SAR-LEU-ORN-VAL' 1785.178 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 3 non-polymer syn 'IODIDE ION' 126.904 1 ? ? ? ? 4 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)CVFFCED(ORN)AII(SAR)L(ORN)V' _entity_poly.pdbx_seq_one_letter_code_can ACVFFCEDAAIIGLAV _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'IODIDE ION' IOD 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 CYS n 1 3 VAL n 1 4 PHE n 1 5 PHE n 1 6 CYS n 1 7 GLU n 1 8 ASP n 1 9 ORN n 1 10 ALA n 1 11 ILE n 1 12 ILE n 1 13 SAR n 1 14 LEU n 1 15 ORN n 1 16 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details '16mer peptide derived from A-beta 17-36' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 1 1 ORN ORN A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ORN 9 9 9 ORN ORN A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 SAR 13 13 13 SAR SAR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ORN 15 15 15 ORN ORN A . n A 1 16 VAL 16 16 16 VAL VAL A . n B 1 1 ORN 1 1 1 ORN ORN B . n B 1 2 CYS 2 2 2 CYS CYS B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 CYS 6 6 6 CYS CYS B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 ASP 8 8 8 ASP ASP B . n B 1 9 ORN 9 9 9 ORN ORN B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 SAR 13 13 13 SAR SAR B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 ORN 15 15 15 ORN ORN B . n B 1 16 VAL 16 16 16 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 101 1 CL CL A . D 2 CL 1 102 2 CL CL A . E 2 CL 1 103 4 CL CL A . F 3 IOD 1 101 1 IOD IOD B . G 2 CL 1 102 3 CL CL B . H 4 HOH 1 201 11 HOH HOH A . H 4 HOH 2 202 2 HOH HOH A . H 4 HOH 3 203 3 HOH HOH A . H 4 HOH 4 204 8 HOH HOH A . I 4 HOH 1 201 10 HOH HOH B . I 4 HOH 2 202 6 HOH HOH B . I 4 HOH 3 203 1 HOH HOH B . I 4 HOH 4 204 7 HOH HOH B . I 4 HOH 5 205 5 HOH HOH B . I 4 HOH 6 206 4 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 5SUU _cell.length_a 50.236 _cell.length_b 50.236 _cell.length_c 64.802 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SUU _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5SUU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES buffer at pH 6.5, 32% Jeffamine M-600' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5SUU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.032 _reflns.d_resolution_low 25.12 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2159 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.01 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_Rmerge_I_obs 0.05975 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 33.18 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.032 _reflns_shell.d_res_low 2.096 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 12.05 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 90.87 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.1306 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5SUU _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3847 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.118 _refine.ls_d_res_high 2.032 _refine.ls_percent_reflns_obs 97.15 _refine.ls_R_factor_obs 0.2184 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2163 _refine.ls_R_factor_R_free 0.2398 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.94 _refine.ls_number_reflns_R_free 344 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.12 _refine.pdbx_overall_phase_error 27.65 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 246 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 261 _refine_hist.d_res_high 2.032 _refine_hist.d_res_low 25.118 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 252 'X-RAY DIFFRACTION' ? f_angle_d 1.236 ? ? 332 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 31.721 ? ? 124 'X-RAY DIFFRACTION' ? f_chiral_restr 0.041 ? ? 40 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 42 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0320 2.5597 1716 0.2177 95.00 0.2675 . . 171 . . . . 'X-RAY DIFFRACTION' . 2.5597 25.1199 1787 0.2157 99.00 0.2274 . . 173 . . . . # _struct.entry_id 5SUU _struct.title ;X-ray crystallographic structure of a covalent trimer derived from A-beta 17-36. X-ray diffractometer data set. (ORN)CVFFCED(ORN)AII(SAR)L(ORN)V. ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5SUU _struct_keywords.text ;amyloid, oligomer, Alzheimer's, trimer, PROTEIN FIBRIL, DE NOVO PROTEIN ; _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5SUU _struct_ref.pdbx_db_accession 5SUU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5SUU A 1 ? 16 ? 5SUU 1 ? 16 ? 1 16 2 1 5SUU B 1 ? 16 ? 5SUU 1 ? 16 ? 1 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA hexameric 6 2 software_defined_assembly PISA dodecameric 12 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4770 ? 1 MORE -110 ? 1 'SSA (A^2)' 6660 ? 2 'ABSA (A^2)' 11190 ? 2 MORE -258 ? 2 'SSA (A^2)' 12050 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C,D,E,H 1 7,8,9 B,F,G,I 2 1,2,3,4,5,6 A,C,D,E,H 2 7,8,9,10,11,12 B,F,G,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.8020000000 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.8020000000 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.8020000000 7 'crystal symmetry operation' 7_445 x-1/3,y-2/3,z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -29.0037681230 0.0000000000 0.0000000000 1.0000000000 21.6006666667 8 'crystal symmetry operation' 8_555 -y+2/3,x-y+1/3,z+1/3 -0.5000000000 -0.8660254038 0.0000000000 25.1180000000 0.8660254038 -0.5000000000 0.0000000000 14.5018840615 0.0000000000 0.0000000000 1.0000000000 21.6006666667 9 'crystal symmetry operation' 9_455 -x+y-1/3,-x+1/3,z+1/3 -0.5000000000 0.8660254038 0.0000000000 -25.1180000000 -0.8660254038 -0.5000000000 0.0000000000 14.5018840615 0.0000000000 0.0000000000 1.0000000000 21.6006666667 10 'crystal symmetry operation' 16_445 y-2/3,x-1/3,-z+2/3 -0.5000000000 0.8660254038 0.0000000000 -25.1180000000 0.8660254038 0.5000000000 0.0000000000 -14.5018840615 0.0000000000 0.0000000000 -1.0000000000 43.2013333333 11 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 29.0037681230 0.0000000000 0.0000000000 -1.0000000000 43.2013333333 12 'crystal symmetry operation' 18_545 -x+1/3,-x+y-1/3,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 25.1180000000 -0.8660254038 0.5000000000 0.0000000000 -14.5018840615 0.0000000000 0.0000000000 -1.0000000000 43.2013333333 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 2 SG ? ? ? 1_555 A CYS 6 SG ? ? A CYS 2 A CYS 6 3_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? B CYS 2 SG ? ? ? 1_555 B CYS 6 SG ? ? B CYS 2 B CYS 6 2_665 ? ? ? ? ? ? ? 2.023 ? ? covale1 covale both ? A ORN 1 C ? ? ? 1_555 A CYS 2 N ? ? A ORN 1 A CYS 2 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale2 covale both ? A ORN 1 NE ? ? ? 1_555 A VAL 16 C ? ? A ORN 1 A VAL 16 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale3 covale both ? A ASP 8 C ? ? ? 1_555 A ORN 9 NE ? ? A ASP 8 A ORN 9 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale4 covale both ? A ORN 9 C ? ? ? 1_555 A ALA 10 N ? ? A ORN 9 A ALA 10 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale5 covale both ? A ILE 12 C ? ? ? 1_555 A SAR 13 N ? ? A ILE 12 A SAR 13 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A SAR 13 C ? ? ? 1_555 A LEU 14 N ? ? A SAR 13 A LEU 14 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? A LEU 14 C ? ? ? 1_555 A ORN 15 N ? ? A LEU 14 A ORN 15 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A ORN 15 C ? ? ? 1_555 A VAL 16 N ? ? A ORN 15 A VAL 16 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale9 covale both ? B ORN 1 C ? ? ? 1_555 B CYS 2 N ? ? B ORN 1 B CYS 2 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale10 covale both ? B ORN 1 NE ? ? ? 1_555 B VAL 16 C ? ? B ORN 1 B VAL 16 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale11 covale both ? B ASP 8 C ? ? ? 1_555 B ORN 9 NE ? ? B ASP 8 B ORN 9 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale12 covale both ? B ORN 9 C ? ? ? 1_555 B ALA 10 N ? ? B ORN 9 B ALA 10 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale13 covale both ? B ILE 12 C ? ? ? 1_555 B SAR 13 N ? ? B ILE 12 B SAR 13 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale14 covale both ? B SAR 13 C ? ? ? 1_555 B LEU 14 N ? ? B SAR 13 B LEU 14 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale15 covale both ? B LEU 14 C ? ? ? 1_555 B ORN 15 N ? ? B LEU 14 B ORN 15 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale16 covale both ? B ORN 15 C ? ? ? 1_555 B VAL 16 N ? ? B ORN 15 B VAL 16 1_555 ? ? ? ? ? ? ? 1.330 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 CYS A 2 ? GLU A 7 ? CYS A 2 GLU A 7 AA1 2 ILE A 11 ? VAL A 16 ? ILE A 11 VAL A 16 AA2 1 CYS B 2 ? GLU B 7 ? CYS B 2 GLU B 7 AA2 2 ILE B 11 ? VAL B 16 ? ILE B 11 VAL B 16 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 6 ? N CYS A 6 O ILE A 12 ? O ILE A 12 AA2 1 2 N CYS B 2 ? N CYS B 2 O VAL B 16 ? O VAL B 16 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 101 ? 3 'binding site for residue CL A 101' AC2 Software A CL 102 ? 2 'binding site for residue CL A 102' AC3 Software A CL 103 ? 2 'binding site for residue CL A 103' AC4 Software B IOD 101 ? 2 'binding site for residue IOD B 101' AC5 Software B CL 102 ? 2 'binding site for residue CL B 102' AC6 ? ? ? ? ? 10 ? AC7 ? ? ? ? ? 7 ? AC8 ? ? ? ? ? 6 ? AC9 ? ? ? ? ? 8 ? AD1 ? ? ? ? ? 5 ? AD2 ? ? ? ? ? 7 ? AD3 ? ? ? ? ? 8 ? AD4 ? ? ? ? ? 5 ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LEU A 14 ? LEU A 14 . ? 1_555 ? 2 AC1 3 ORN A 15 ? ORN A 15 . ? 1_555 ? 3 AC1 3 ORN B 9 ? ORN B 9 . ? 10_455 ? 4 AC2 2 ORN A 1 ? ORN A 1 . ? 1_555 ? 5 AC2 2 ORN A 15 ? ORN A 15 . ? 1_555 ? 6 AC3 2 ORN A 9 ? ORN A 9 . ? 11_555 ? 7 AC3 2 ORN B 15 ? ORN B 15 . ? 8_555 ? 8 AC4 2 ORN B 1 ? ORN B 1 . ? 1_555 ? 9 AC4 2 ORN B 15 ? ORN B 15 . ? 1_555 ? 10 AC5 2 ALA B 10 ? ALA B 10 . ? 1_555 ? 11 AC5 2 ALA B 10 ? ALA B 10 . ? 10_455 ? 12 AC6 10 VAL B 3 ? VAL B 3 . ? 1_555 ? 13 AC6 10 CYS B 6 ? CYS B 6 . ? 2_665 ? 14 AC6 10 GLU B 7 ? GLU B 7 . ? 2_665 ? 15 AC6 10 ASP B 8 ? ASP B 8 . ? 5_665 ? 16 AC6 10 LEU B 14 ? LEU B 14 . ? 1_555 ? 17 AC6 10 ORN B 15 ? ORN B 15 . ? 1_555 ? 18 AC6 10 VAL B 16 ? VAL B 16 . ? 1_555 ? 19 AC6 10 IOD F . ? IOD B 101 . ? 1_555 ? 20 AC6 10 HOH I . ? HOH B 201 . ? 4_555 ? 21 AC6 10 HOH I . ? HOH B 201 . ? 1_555 ? 22 AC7 7 CYS B 2 ? CYS B 2 . ? 1_555 ? 23 AC7 7 ASP B 8 ? ASP B 8 . ? 5_665 ? 24 AC7 7 LEU B 14 ? LEU B 14 . ? 1_555 ? 25 AC7 7 ORN B 15 ? ORN B 15 . ? 1_555 ? 26 AC7 7 IOD F . ? IOD B 101 . ? 1_555 ? 27 AC7 7 HOH I . ? HOH B 201 . ? 4_555 ? 28 AC7 7 HOH I . ? HOH B 201 . ? 1_555 ? 29 AC8 6 CL C . ? CL A 101 . ? 10_455 ? 30 AC8 6 ORN B 1 ? ORN B 1 . ? 5_565 ? 31 AC8 6 GLU B 7 ? GLU B 7 . ? 1_555 ? 32 AC8 6 ALA B 10 ? ALA B 10 . ? 10_455 ? 33 AC8 6 ALA B 10 ? ALA B 10 . ? 1_555 ? 34 AC8 6 ILE B 11 ? ILE B 11 . ? 10_455 ? 35 AC9 8 CL C . ? CL A 101 . ? 10_455 ? 36 AC9 8 CYS B 6 ? CYS B 6 . ? 1_555 ? 37 AC9 8 GLU B 7 ? GLU B 7 . ? 1_555 ? 38 AC9 8 ASP B 8 ? ASP B 8 . ? 1_555 ? 39 AC9 8 ILE B 11 ? ILE B 11 . ? 1_555 ? 40 AC9 8 ILE B 11 ? ILE B 11 . ? 10_455 ? 41 AC9 8 CL G . ? CL B 102 . ? 10_455 ? 42 AC9 8 CL G . ? CL B 102 . ? 1_555 ? 43 AD1 5 PHE B 4 ? PHE B 4 . ? 1_555 ? 44 AD1 5 PHE B 5 ? PHE B 5 . ? 1_555 ? 45 AD1 5 CYS B 6 ? CYS B 6 . ? 1_555 ? 46 AD1 5 ILE B 11 ? ILE B 11 . ? 1_555 ? 47 AD1 5 LEU B 14 ? LEU B 14 . ? 1_555 ? 48 AD2 7 CYS B 2 ? CYS B 2 . ? 1_555 ? 49 AD2 7 VAL B 3 ? VAL B 3 . ? 1_555 ? 50 AD2 7 PHE B 4 ? PHE B 4 . ? 1_555 ? 51 AD2 7 PHE B 4 ? PHE B 4 . ? 3_565 ? 52 AD2 7 ILE B 12 ? ILE B 12 . ? 1_555 ? 53 AD2 7 ORN B 15 ? ORN B 15 . ? 1_555 ? 54 AD2 7 VAL B 16 ? VAL B 16 . ? 1_555 ? 55 AD3 8 CL E . ? CL A 103 . ? 15_554 ? 56 AD3 8 CYS B 2 ? CYS B 2 . ? 1_555 ? 57 AD3 8 VAL B 3 ? VAL B 3 . ? 1_555 ? 58 AD3 8 PHE B 4 ? PHE B 4 . ? 3_565 ? 59 AD3 8 PHE B 4 ? PHE B 4 . ? 1_555 ? 60 AD3 8 SAR B 13 ? SAR B 13 . ? 1_555 ? 61 AD3 8 VAL B 16 ? VAL B 16 . ? 1_555 ? 62 AD3 8 IOD F . ? IOD B 101 . ? 1_555 ? 63 AD4 5 CL E . ? CL A 103 . ? 15_554 ? 64 AD4 5 ORN B 1 ? ORN B 1 . ? 1_555 ? 65 AD4 5 CYS B 2 ? CYS B 2 . ? 1_555 ? 66 AD4 5 LEU B 14 ? LEU B 14 . ? 1_555 ? 67 AD4 5 IOD F . ? IOD B 101 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 203 ? ? 1_555 O B HOH 203 ? ? 2_665 2.04 2 1 O A HOH 202 ? ? 1_555 O A HOH 202 ? ? 2_555 2.06 3 1 N B ORN 1 ? ? 1_555 OD1 B ASP 8 ? ? 5_665 2.16 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B CL 102 ? G CL . 2 1 A HOH 201 ? H HOH . 3 1 B HOH 201 ? I HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -2.4551 5.9060 6.9049 0.2303 0.2075 0.1429 0.0432 -0.0118 -0.0537 5.8265 6.4682 8.7407 0.2414 3.9832 -0.3757 -0.7721 -0.3698 0.7414 0.4348 0.2499 0.1762 -0.3336 -0.2619 0.4794 'X-RAY DIFFRACTION' 2 ? refined -0.3400 22.5867 3.5208 0.0727 0.1026 0.0918 -0.0121 0.0313 -0.1365 4.8230 2.1167 1.9916 0.6912 -0.9926 -0.1969 0.0439 0.0613 -0.3080 -0.2062 -0.0390 -0.1650 0.0775 0.0399 0.2198 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 15 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASP N N N N 14 ASP CA C N S 15 ASP C C N N 16 ASP O O N N 17 ASP CB C N N 18 ASP CG C N N 19 ASP OD1 O N N 20 ASP OD2 O N N 21 ASP OXT O N N 22 ASP H H N N 23 ASP H2 H N N 24 ASP HA H N N 25 ASP HB2 H N N 26 ASP HB3 H N N 27 ASP HD2 H N N 28 ASP HXT H N N 29 CL CL CL N N 30 CYS N N N N 31 CYS CA C N R 32 CYS C C N N 33 CYS O O N N 34 CYS CB C N N 35 CYS SG S N N 36 CYS OXT O N N 37 CYS H H N N 38 CYS H2 H N N 39 CYS HA H N N 40 CYS HB2 H N N 41 CYS HB3 H N N 42 CYS HG H N N 43 CYS HXT H N N 44 GLU N N N N 45 GLU CA C N S 46 GLU C C N N 47 GLU O O N N 48 GLU CB C N N 49 GLU CG C N N 50 GLU CD C N N 51 GLU OE1 O N N 52 GLU OE2 O N N 53 GLU OXT O N N 54 GLU H H N N 55 GLU H2 H N N 56 GLU HA H N N 57 GLU HB2 H N N 58 GLU HB3 H N N 59 GLU HG2 H N N 60 GLU HG3 H N N 61 GLU HE2 H N N 62 GLU HXT H N N 63 HOH O O N N 64 HOH H1 H N N 65 HOH H2 H N N 66 ILE N N N N 67 ILE CA C N S 68 ILE C C N N 69 ILE O O N N 70 ILE CB C N S 71 ILE CG1 C N N 72 ILE CG2 C N N 73 ILE CD1 C N N 74 ILE OXT O N N 75 ILE H H N N 76 ILE H2 H N N 77 ILE HA H N N 78 ILE HB H N N 79 ILE HG12 H N N 80 ILE HG13 H N N 81 ILE HG21 H N N 82 ILE HG22 H N N 83 ILE HG23 H N N 84 ILE HD11 H N N 85 ILE HD12 H N N 86 ILE HD13 H N N 87 ILE HXT H N N 88 IOD I I N N 89 LEU N N N N 90 LEU CA C N S 91 LEU C C N N 92 LEU O O N N 93 LEU CB C N N 94 LEU CG C N N 95 LEU CD1 C N N 96 LEU CD2 C N N 97 LEU OXT O N N 98 LEU H H N N 99 LEU H2 H N N 100 LEU HA H N N 101 LEU HB2 H N N 102 LEU HB3 H N N 103 LEU HG H N N 104 LEU HD11 H N N 105 LEU HD12 H N N 106 LEU HD13 H N N 107 LEU HD21 H N N 108 LEU HD22 H N N 109 LEU HD23 H N N 110 LEU HXT H N N 111 ORN N N N N 112 ORN CA C N S 113 ORN CB C N N 114 ORN CG C N N 115 ORN CD C N N 116 ORN NE N N N 117 ORN C C N N 118 ORN O O N N 119 ORN OXT O N N 120 ORN H H N N 121 ORN H2 H N N 122 ORN HA H N N 123 ORN HB2 H N N 124 ORN HB3 H N N 125 ORN HG2 H N N 126 ORN HG3 H N N 127 ORN HD2 H N N 128 ORN HD3 H N N 129 ORN HE1 H N N 130 ORN HE2 H N N 131 ORN HXT H N N 132 PHE N N N N 133 PHE CA C N S 134 PHE C C N N 135 PHE O O N N 136 PHE CB C N N 137 PHE CG C Y N 138 PHE CD1 C Y N 139 PHE CD2 C Y N 140 PHE CE1 C Y N 141 PHE CE2 C Y N 142 PHE CZ C Y N 143 PHE OXT O N N 144 PHE H H N N 145 PHE H2 H N N 146 PHE HA H N N 147 PHE HB2 H N N 148 PHE HB3 H N N 149 PHE HD1 H N N 150 PHE HD2 H N N 151 PHE HE1 H N N 152 PHE HE2 H N N 153 PHE HZ H N N 154 PHE HXT H N N 155 SAR N N N N 156 SAR CA C N N 157 SAR C C N N 158 SAR O O N N 159 SAR CN C N N 160 SAR OXT O N N 161 SAR H H N N 162 SAR HA2 H N N 163 SAR HA3 H N N 164 SAR HN1 H N N 165 SAR HN2 H N N 166 SAR HN3 H N N 167 SAR HXT H N N 168 VAL N N N N 169 VAL CA C N S 170 VAL C C N N 171 VAL O O N N 172 VAL CB C N N 173 VAL CG1 C N N 174 VAL CG2 C N N 175 VAL OXT O N N 176 VAL H H N N 177 VAL H2 H N N 178 VAL HA H N N 179 VAL HB H N N 180 VAL HG11 H N N 181 VAL HG12 H N N 182 VAL HG13 H N N 183 VAL HG21 H N N 184 VAL HG22 H N N 185 VAL HG23 H N N 186 VAL HXT H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASP N CA sing N N 13 ASP N H sing N N 14 ASP N H2 sing N N 15 ASP CA C sing N N 16 ASP CA CB sing N N 17 ASP CA HA sing N N 18 ASP C O doub N N 19 ASP C OXT sing N N 20 ASP CB CG sing N N 21 ASP CB HB2 sing N N 22 ASP CB HB3 sing N N 23 ASP CG OD1 doub N N 24 ASP CG OD2 sing N N 25 ASP OD2 HD2 sing N N 26 ASP OXT HXT sing N N 27 CYS N CA sing N N 28 CYS N H sing N N 29 CYS N H2 sing N N 30 CYS CA C sing N N 31 CYS CA CB sing N N 32 CYS CA HA sing N N 33 CYS C O doub N N 34 CYS C OXT sing N N 35 CYS CB SG sing N N 36 CYS CB HB2 sing N N 37 CYS CB HB3 sing N N 38 CYS SG HG sing N N 39 CYS OXT HXT sing N N 40 GLU N CA sing N N 41 GLU N H sing N N 42 GLU N H2 sing N N 43 GLU CA C sing N N 44 GLU CA CB sing N N 45 GLU CA HA sing N N 46 GLU C O doub N N 47 GLU C OXT sing N N 48 GLU CB CG sing N N 49 GLU CB HB2 sing N N 50 GLU CB HB3 sing N N 51 GLU CG CD sing N N 52 GLU CG HG2 sing N N 53 GLU CG HG3 sing N N 54 GLU CD OE1 doub N N 55 GLU CD OE2 sing N N 56 GLU OE2 HE2 sing N N 57 GLU OXT HXT sing N N 58 HOH O H1 sing N N 59 HOH O H2 sing N N 60 ILE N CA sing N N 61 ILE N H sing N N 62 ILE N H2 sing N N 63 ILE CA C sing N N 64 ILE CA CB sing N N 65 ILE CA HA sing N N 66 ILE C O doub N N 67 ILE C OXT sing N N 68 ILE CB CG1 sing N N 69 ILE CB CG2 sing N N 70 ILE CB HB sing N N 71 ILE CG1 CD1 sing N N 72 ILE CG1 HG12 sing N N 73 ILE CG1 HG13 sing N N 74 ILE CG2 HG21 sing N N 75 ILE CG2 HG22 sing N N 76 ILE CG2 HG23 sing N N 77 ILE CD1 HD11 sing N N 78 ILE CD1 HD12 sing N N 79 ILE CD1 HD13 sing N N 80 ILE OXT HXT sing N N 81 LEU N CA sing N N 82 LEU N H sing N N 83 LEU N H2 sing N N 84 LEU CA C sing N N 85 LEU CA CB sing N N 86 LEU CA HA sing N N 87 LEU C O doub N N 88 LEU C OXT sing N N 89 LEU CB CG sing N N 90 LEU CB HB2 sing N N 91 LEU CB HB3 sing N N 92 LEU CG CD1 sing N N 93 LEU CG CD2 sing N N 94 LEU CG HG sing N N 95 LEU CD1 HD11 sing N N 96 LEU CD1 HD12 sing N N 97 LEU CD1 HD13 sing N N 98 LEU CD2 HD21 sing N N 99 LEU CD2 HD22 sing N N 100 LEU CD2 HD23 sing N N 101 LEU OXT HXT sing N N 102 ORN N CA sing N N 103 ORN N H sing N N 104 ORN N H2 sing N N 105 ORN CA CB sing N N 106 ORN CA C sing N N 107 ORN CA HA sing N N 108 ORN CB CG sing N N 109 ORN CB HB2 sing N N 110 ORN CB HB3 sing N N 111 ORN CG CD sing N N 112 ORN CG HG2 sing N N 113 ORN CG HG3 sing N N 114 ORN CD NE sing N N 115 ORN CD HD2 sing N N 116 ORN CD HD3 sing N N 117 ORN NE HE1 sing N N 118 ORN NE HE2 sing N N 119 ORN C O doub N N 120 ORN C OXT sing N N 121 ORN OXT HXT sing N N 122 PHE N CA sing N N 123 PHE N H sing N N 124 PHE N H2 sing N N 125 PHE CA C sing N N 126 PHE CA CB sing N N 127 PHE CA HA sing N N 128 PHE C O doub N N 129 PHE C OXT sing N N 130 PHE CB CG sing N N 131 PHE CB HB2 sing N N 132 PHE CB HB3 sing N N 133 PHE CG CD1 doub Y N 134 PHE CG CD2 sing Y N 135 PHE CD1 CE1 sing Y N 136 PHE CD1 HD1 sing N N 137 PHE CD2 CE2 doub Y N 138 PHE CD2 HD2 sing N N 139 PHE CE1 CZ doub Y N 140 PHE CE1 HE1 sing N N 141 PHE CE2 CZ sing Y N 142 PHE CE2 HE2 sing N N 143 PHE CZ HZ sing N N 144 PHE OXT HXT sing N N 145 SAR N CA sing N N 146 SAR N CN sing N N 147 SAR N H sing N N 148 SAR CA C sing N N 149 SAR CA HA2 sing N N 150 SAR CA HA3 sing N N 151 SAR C O doub N N 152 SAR C OXT sing N N 153 SAR CN HN1 sing N N 154 SAR CN HN2 sing N N 155 SAR CN HN3 sing N N 156 SAR OXT HXT sing N N 157 VAL N CA sing N N 158 VAL N H sing N N 159 VAL N H2 sing N N 160 VAL CA C sing N N 161 VAL CA CB sing N N 162 VAL CA HA sing N N 163 VAL C O doub N N 164 VAL C OXT sing N N 165 VAL CB CG1 sing N N 166 VAL CB CG2 sing N N 167 VAL CB HB sing N N 168 VAL CG1 HG11 sing N N 169 VAL CG1 HG12 sing N N 170 VAL CG1 HG13 sing N N 171 VAL CG2 HG21 sing N N 172 VAL CG2 HG22 sing N N 173 VAL CG2 HG23 sing N N 174 VAL OXT HXT sing N N 175 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM097562 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5SUU _atom_sites.fract_transf_matrix[1][1] 0.019906 _atom_sites.fract_transf_matrix[1][2] 0.011493 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022986 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015432 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H I N O S # loop_