HEADER PEPTIDE BINDING PROTEIN 13-AUG-16 5SZC TITLE STRUCTURE OF HUMAN DPF3 DOUBLE-PHD DOMAIN BOUND TO HISTONE H3 TAIL TITLE 2 PEPTIDE WITH MONOMETHYLATED K4 AND ACETYLATED K14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN DPF3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOUBLE-PHD DOMAIN (UNP RESIDUES 254-368); COMPND 5 SYNONYM: BRG1-ASSOCIATED FACTOR 45C,BAF45C,ZINC FINGER PROTEIN CER- COMPND 6 D4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3 TAIL PEPTIDE; COMPND 10 CHAIN: H; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPF3, BAF45C, CERD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS CHROMATIN, MODIFIED HISTONE, PHD DOMAIN, ZINC BINDING DOMAIN, BAF45, KEYWDS 2 BAF COMPLEX, METAL BINDING PROTEIN, PEPTIDE-BINDING PROTEIN, PEPTIDE KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SINGH,A.LOCAL,A.SHIAU,B.REN,K.D.CORBETT REVDAT 4 15-NOV-23 5SZC 1 ATOM REVDAT 3 04-OCT-23 5SZC 1 REMARK REVDAT 2 27-FEB-19 5SZC 1 KEYWDS JRNL REVDAT 1 16-AUG-17 5SZC 0 JRNL AUTH A.LOCAL,H.HUANG,C.P.ALBUQUERQUE,N.SINGH,A.Y.LEE,W.WANG, JRNL AUTH 2 C.WANG,J.E.HSIA,A.K.SHIAU,K.GE,K.D.CORBETT,D.WANG,H.ZHOU, JRNL AUTH 3 B.REN JRNL TITL IDENTIFICATION OF H3K4ME1-ASSOCIATED PROTEINS AT MAMMALIAN JRNL TITL 2 ENHANCERS. JRNL REF NAT. GENET. V. 50 73 2018 JRNL REFN ISSN 1546-1718 JRNL PMID 29255264 JRNL DOI 10.1038/S41588-017-0015-6 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.280 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 70050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.270 REMARK 3 FREE R VALUE TEST SET COUNT : 5792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0150 - 3.7068 1.00 2144 195 0.1722 0.1827 REMARK 3 2 3.7068 - 2.9425 1.00 2158 191 0.1603 0.1743 REMARK 3 3 2.9425 - 2.5707 1.00 2159 189 0.1656 0.1708 REMARK 3 4 2.5707 - 2.3357 1.00 2139 196 0.1544 0.1744 REMARK 3 5 2.3357 - 2.1683 0.99 2131 186 0.1802 0.1996 REMARK 3 6 2.1683 - 2.0405 1.00 2164 184 0.1340 0.1504 REMARK 3 7 2.0405 - 1.9383 1.00 2154 187 0.1269 0.1395 REMARK 3 8 1.9383 - 1.8539 0.97 2080 178 0.1743 0.1688 REMARK 3 9 1.8539 - 1.7825 1.00 2144 191 0.1200 0.1375 REMARK 3 10 1.7825 - 1.7210 1.00 2152 197 0.1104 0.1108 REMARK 3 11 1.7210 - 1.6672 1.00 2187 189 0.1015 0.1601 REMARK 3 12 1.6672 - 1.6196 1.00 2147 192 0.1049 0.1297 REMARK 3 13 1.6196 - 1.5769 1.00 2097 190 0.1002 0.1512 REMARK 3 14 1.5769 - 1.5384 0.99 2184 194 0.1056 0.1134 REMARK 3 15 1.5384 - 1.5035 1.00 2123 188 0.1078 0.1647 REMARK 3 16 1.5035 - 1.4715 1.00 2174 197 0.1072 0.1354 REMARK 3 17 1.4715 - 1.4420 1.00 2135 194 0.1252 0.1506 REMARK 3 18 1.4420 - 1.4148 1.00 2167 199 0.1165 0.1494 REMARK 3 19 1.4148 - 1.3896 1.00 2137 187 0.1185 0.1564 REMARK 3 20 1.3896 - 1.3660 1.00 2146 204 0.1191 0.1597 REMARK 3 21 1.3660 - 1.3440 1.00 2162 201 0.1283 0.1497 REMARK 3 22 1.3440 - 1.3233 1.00 2123 185 0.1310 0.1569 REMARK 3 23 1.3233 - 1.3038 1.00 2133 196 0.1276 0.1697 REMARK 3 24 1.3038 - 1.2855 0.99 2132 214 0.2411 0.3174 REMARK 3 25 1.2855 - 1.2681 1.00 2101 187 0.1665 0.1820 REMARK 3 26 1.2681 - 1.2516 1.00 2207 183 0.1366 0.1704 REMARK 3 27 1.2516 - 1.2360 1.00 2100 217 0.1329 0.1587 REMARK 3 28 1.2360 - 1.2211 1.00 2164 182 0.1673 0.1821 REMARK 3 29 1.2211 - 1.2069 1.00 2172 182 0.2703 0.3054 REMARK 3 30 1.2069 - 1.1933 0.97 2042 217 0.1919 0.2437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1045 REMARK 3 ANGLE : 1.122 1420 REMARK 3 CHIRALITY : 0.088 153 REMARK 3 PLANARITY : 0.006 184 REMARK 3 DIHEDRAL : 13.988 390 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : MIRROR: RH COATED FLAT, TOROIDAL REMARK 200 FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 38.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 5SZB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M TRI-SODIUM CITRATE, 0.1 M HEPES REMARK 280 PH 7.5, 4% MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.78550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 19.66050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 19.66050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.67825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 19.66050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 19.66050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.89275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 19.66050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 19.66050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.67825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 19.66050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 19.66050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.89275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.78550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 643 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO H 16 REMARK 465 ARG H 17 REMARK 465 LYS H 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 559 O HOH A 569 1.86 REMARK 500 O HOH A 513 O HOH A 582 1.97 REMARK 500 O HOH A 567 O HOH A 582 2.05 REMARK 500 OE1 GLN H 5 O HOH H 101 2.06 REMARK 500 O HOH A 503 O HOH A 566 2.12 REMARK 500 O HOH A 556 O HOH A 632 2.12 REMARK 500 O HOH A 601 O HOH A 640 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 630 O HOH A 653 5545 1.96 REMARK 500 O HOH A 559 O HOH H 104 7566 2.05 REMARK 500 O HOH A 576 O HOH A 631 3654 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 271 108.07 -162.09 REMARK 500 THR H 11 69.43 -116.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 655 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 656 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 262 SG REMARK 620 2 CYS A 265 SG 110.6 REMARK 620 3 HIS A 292 ND1 100.3 95.7 REMARK 620 4 CYS A 295 SG 111.9 117.9 118.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 CYS A 287 SG 108.6 REMARK 620 3 CYS A 313 SG 113.1 112.3 REMARK 620 4 CYS A 316 SG 105.9 109.7 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 319 SG REMARK 620 2 CYS A 322 SG 110.5 REMARK 620 3 HIS A 342 ND1 100.2 97.2 REMARK 620 4 CYS A 345 SG 119.7 109.5 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 334 SG REMARK 620 2 CYS A 337 SG 105.9 REMARK 620 3 CYS A 360 SG 110.4 112.1 REMARK 620 4 CYS A 363 SG 111.0 104.7 112.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SZB RELATED DB: PDB REMARK 900 5SZB CONTAINS THE SAME PROTEIN BOUND TO HISTONE H3 TAIL PEPTIDE REMARK 900 WITH ACETYLATED K14 DBREF 5SZC A 254 368 UNP Q92784 DPF3_HUMAN 254 368 DBREF 5SZC H 1 18 UNP V9H1G0 V9H1G0_HUMAN 2 19 SEQRES 1 A 115 GLY THR VAL ILE PRO ASN ASN TYR CYS ASP PHE CYS LEU SEQRES 2 A 115 GLY GLY SER ASN MET ASN LYS LYS SER GLY ARG PRO GLU SEQRES 3 A 115 GLU LEU VAL SER CYS ALA ASP CYS GLY ARG SER GLY HIS SEQRES 4 A 115 PRO THR CYS LEU GLN PHE THR LEU ASN MET THR GLU ALA SEQRES 5 A 115 VAL LYS THR TYR LYS TRP GLN CYS ILE GLU CYS LYS SER SEQRES 6 A 115 CYS ILE LEU CYS GLY THR SER GLU ASN ASP ASP GLN LEU SEQRES 7 A 115 LEU PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR SEQRES 8 A 115 CYS LEU ASN PRO PRO VAL ALA GLU PRO PRO GLU GLY SER SEQRES 9 A 115 TRP SER CYS HIS LEU CYS TRP GLU LEU LEU LYS SEQRES 1 H 18 ALA ARG THR MLZ GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 H 18 ALY ALA PRO ARG LYS MODRES 5SZC MLZ H 4 LYS MODIFIED RESIDUE MODRES 5SZC ALY H 14 LYS MODIFIED RESIDUE HET MLZ H 4 24 HET ALY H 14 26 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET MPD A 405 22 HETNAM MLZ N-METHYL-LYSINE HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 MLZ C7 H16 N2 O2 FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 ZN 4(ZN 2+) FORMUL 7 MPD C6 H14 O2 FORMUL 8 HOH *172(H2 O) HELIX 1 AA1 THR A 299 LYS A 307 1 9 HELIX 2 AA2 ASN A 327 ASP A 329 5 3 HELIX 3 AA3 CYS A 360 LYS A 368 1 9 HELIX 4 AA4 MLZ H 4 THR H 11 1 8 SHEET 1 AA1 2 VAL A 282 SER A 283 0 SHEET 2 AA1 2 SER A 290 GLY A 291 -1 O GLY A 291 N VAL A 282 SHEET 1 AA2 3 GLY A 340 HIS A 342 0 SHEET 2 AA2 3 LEU A 331 PHE A 333 -1 N LEU A 332 O TYR A 341 SHEET 3 AA2 3 ARG H 2 THR H 3 -1 O ARG H 2 N PHE A 333 LINK C THR H 3 N MLZ H 4 1555 1555 1.33 LINK C MLZ H 4 N GLN H 5 1555 1555 1.32 LINK C GLY H 13 N ALY H 14 1555 1555 1.33 LINK C ALY H 14 N ALA H 15 1555 1555 1.33 LINK SG CYS A 262 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 265 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 284 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 287 ZN ZN A 402 1555 1555 2.30 LINK ND1 HIS A 292 ZN ZN A 401 1555 1555 2.08 LINK SG CYS A 295 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 313 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 316 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 319 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 322 ZN ZN A 403 1555 1555 2.27 LINK SG CYS A 334 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 337 ZN ZN A 404 1555 1555 2.31 LINK ND1 HIS A 342 ZN ZN A 403 1555 1555 2.12 LINK SG CYS A 345 ZN ZN A 403 1555 1555 2.26 LINK SG CYS A 360 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 363 ZN ZN A 404 1555 1555 2.29 CISPEP 1 ASN A 347 PRO A 348 0 2.64 SITE 1 AC1 4 CYS A 262 CYS A 265 HIS A 292 CYS A 295 SITE 1 AC2 4 CYS A 284 CYS A 287 CYS A 313 CYS A 316 SITE 1 AC3 4 CYS A 319 CYS A 322 HIS A 342 CYS A 345 SITE 1 AC4 4 CYS A 334 CYS A 337 CYS A 360 CYS A 363 SITE 1 AC5 7 TYR A 261 LEU A 266 ARG A 277 PRO A 278 SITE 2 AC5 7 TRP A 364 HOH A 508 HOH A 576 CRYST1 39.321 39.321 147.571 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006776 0.00000