data_5UFF # _entry.id 5UFF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UFF pdb_00005uff 10.2210/pdb5uff/pdb WWPDB D_1000225778 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5UEI PDB . unspecified 5UF1 PDB . unspecified 5UF4 PDB . unspecified 5UFB PDB . unspecified 5UFC PDB . unspecified 5UFD PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UFF _pdbx_database_status.recvd_initial_deposition_date 2017-01-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Collins, B.C.' 1 ? 'Gunn, R.J.' 2 ? 'McKitrick, T.R.' 3 ? 'Herrin, B.R.' 4 ? 'Cummings, R.D.' 5 ? 'Cooper, M.D.' 6 ? 'Wilson, I.A.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 1878-4186 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 1667 _citation.page_last 1678.e4 _citation.title 'Structural Insights into VLR Fine Specificity for Blood Group Carbohydrates.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2017.09.003 _citation.pdbx_database_id_PubMed 28988747 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Collins, B.C.' 1 ? primary 'Gunn, R.J.' 2 ? primary 'McKitrick, T.R.' 3 ? primary 'Cummings, R.D.' 4 ? primary 'Cooper, M.D.' 5 ? primary 'Herrin, B.R.' 6 ? primary 'Wilson, I.A.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 85.690 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5UFF _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.969 _cell.length_a_esd ? _cell.length_b 47.503 _cell.length_b_esd ? _cell.length_c 57.276 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man RBC36 23763.137 1 ? ? ? ? 2 branched man 'alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose' 488.438 1 ? ? ? ? 3 water nat water 18.015 61 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name "2'-fucosyllactose" # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD CECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTNTPVRAVTEASTSPSKC ; _entity_poly.pdbx_seq_one_letter_code_can ;CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD CECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTNTPVRAVTEASTSPSKC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 PRO n 1 3 SER n 1 4 GLN n 1 5 CYS n 1 6 SER n 1 7 CYS n 1 8 SER n 1 9 GLY n 1 10 THR n 1 11 THR n 1 12 VAL n 1 13 ASP n 1 14 CYS n 1 15 ARG n 1 16 SER n 1 17 LYS n 1 18 ARG n 1 19 HIS n 1 20 ALA n 1 21 SER n 1 22 VAL n 1 23 PRO n 1 24 ALA n 1 25 GLY n 1 26 ILE n 1 27 PRO n 1 28 THR n 1 29 ASN n 1 30 ALA n 1 31 GLN n 1 32 ILE n 1 33 LEU n 1 34 TYR n 1 35 LEU n 1 36 HIS n 1 37 ASP n 1 38 ASN n 1 39 GLN n 1 40 ILE n 1 41 THR n 1 42 LYS n 1 43 LEU n 1 44 GLU n 1 45 PRO n 1 46 GLY n 1 47 VAL n 1 48 PHE n 1 49 ASP n 1 50 SER n 1 51 LEU n 1 52 ILE n 1 53 ASN n 1 54 LEU n 1 55 LYS n 1 56 GLU n 1 57 LEU n 1 58 TYR n 1 59 LEU n 1 60 GLY n 1 61 SER n 1 62 ASN n 1 63 GLN n 1 64 LEU n 1 65 GLY n 1 66 ALA n 1 67 LEU n 1 68 PRO n 1 69 VAL n 1 70 GLY n 1 71 VAL n 1 72 PHE n 1 73 ASP n 1 74 SER n 1 75 LEU n 1 76 THR n 1 77 GLN n 1 78 LEU n 1 79 THR n 1 80 VAL n 1 81 LEU n 1 82 ASP n 1 83 LEU n 1 84 GLY n 1 85 THR n 1 86 ASN n 1 87 GLN n 1 88 LEU n 1 89 THR n 1 90 VAL n 1 91 LEU n 1 92 PRO n 1 93 SER n 1 94 ALA n 1 95 VAL n 1 96 PHE n 1 97 ASP n 1 98 ARG n 1 99 LEU n 1 100 VAL n 1 101 HIS n 1 102 LEU n 1 103 LYS n 1 104 GLU n 1 105 LEU n 1 106 PHE n 1 107 MET n 1 108 CYS n 1 109 CYS n 1 110 ASN n 1 111 LYS n 1 112 LEU n 1 113 THR n 1 114 GLU n 1 115 LEU n 1 116 PRO n 1 117 ARG n 1 118 GLY n 1 119 ILE n 1 120 GLU n 1 121 ARG n 1 122 LEU n 1 123 THR n 1 124 HIS n 1 125 LEU n 1 126 THR n 1 127 HIS n 1 128 LEU n 1 129 ALA n 1 130 LEU n 1 131 ASP n 1 132 GLN n 1 133 ASN n 1 134 GLN n 1 135 LEU n 1 136 LYS n 1 137 SER n 1 138 ILE n 1 139 PRO n 1 140 HIS n 1 141 GLY n 1 142 ALA n 1 143 PHE n 1 144 ASP n 1 145 ARG n 1 146 LEU n 1 147 SER n 1 148 SER n 1 149 LEU n 1 150 THR n 1 151 HIS n 1 152 ALA n 1 153 TYR n 1 154 LEU n 1 155 PHE n 1 156 GLY n 1 157 ASN n 1 158 PRO n 1 159 TRP n 1 160 ASP n 1 161 CYS n 1 162 GLU n 1 163 CYS n 1 164 ARG n 1 165 ASP n 1 166 ILE n 1 167 MET n 1 168 TYR n 1 169 LEU n 1 170 ARG n 1 171 ASN n 1 172 TRP n 1 173 VAL n 1 174 ALA n 1 175 ASP n 1 176 HIS n 1 177 THR n 1 178 SER n 1 179 ILE n 1 180 ALA n 1 181 MET n 1 182 ARG n 1 183 TRP n 1 184 ASP n 1 185 GLY n 1 186 LYS n 1 187 ALA n 1 188 VAL n 1 189 ASN n 1 190 ASP n 1 191 PRO n 1 192 ASP n 1 193 SER n 1 194 ALA n 1 195 LYS n 1 196 CYS n 1 197 ALA n 1 198 GLY n 1 199 THR n 1 200 ASN n 1 201 THR n 1 202 PRO n 1 203 VAL n 1 204 ARG n 1 205 ALA n 1 206 VAL n 1 207 THR n 1 208 GLU n 1 209 ALA n 1 210 SER n 1 211 THR n 1 212 SER n 1 213 PRO n 1 214 SER n 1 215 LYS n 1 216 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 216 _entity_src_gen.gene_src_common_name 'Sea lamprey' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Petromyzon marinus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7757 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5UFF _struct_ref.pdbx_db_accession 5UFF _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5UFF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 216 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5UFF _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 237 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 237 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UFF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '11.4 mg/mL RBC36, 6.9 mM fucose(alpha-1-2)lactose, 140 mM ammonium chloride, 22% PEG3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97840 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97840 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5UFF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.1370 _reflns.d_resolution_low 39.865 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11758 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.07 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.1370 _reflns_shell.d_res_low 2.21 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs 7003 _reflns_shell.number_possible ? _reflns_shell.number_unique_all 1106 _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.70 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 83.690 _refine.B_iso_mean 37.6366 _refine.B_iso_min 21.080 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5UFF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.1370 _refine.ls_d_res_low 39.8560 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11655 _refine.ls_number_reflns_R_free 560 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.8900 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2259 _refine.ls_R_factor_R_free 0.2824 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2231 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 3E6J' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 39.5800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.1370 _refine_hist.d_res_low 39.8560 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 1713 _refine_hist.pdbx_number_residues_total 216 _refine_hist.pdbx_B_iso_mean_ligand 38.98 _refine_hist.pdbx_B_iso_mean_solvent 39.11 _refine_hist.pdbx_number_atoms_protein 1619 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1694 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.117 ? 2312 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.040 ? 271 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 290 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 27.879 ? 656 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.1371 2.3521 2814 . 140 2674 94.0000 . . . 0.4384 0.0000 0.3703 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 2.3521 2.6924 2905 . 149 2756 97.0000 . . . 0.3701 0.0000 0.2740 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 2.6924 3.3919 2958 . 145 2813 98.0000 . . . 0.2740 0.0000 0.2327 . . . . . . 4 . . . 'X-RAY DIFFRACTION' 3.3919 39.8631 2978 . 126 2852 98.0000 . . . 0.2225 0.0000 0.1748 . . . . . . 4 . . . # _struct.entry_id 5UFF _struct.title 'Crystal Structure of Variable Lymphocyte Receptor (VLR) RBC36 with Fucose(alpha-1-2)Lactose bound' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UFF _struct_keywords.text ;variable lymphocyte receptors, VLR, leucine-rich repeat, LRR, adaptive immunity, immune system, sea lamprey, jawless fish, receptor, glycan binding, glycan receptor ; _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 118 ? LEU A 122 ? GLY A 139 LEU A 143 5 ? 5 HELX_P HELX_P2 AA2 CYS A 163 ? ASP A 165 ? CYS A 184 ASP A 186 5 ? 3 HELX_P HELX_P3 AA3 ILE A 166 ? HIS A 176 ? ILE A 187 HIS A 197 1 ? 11 HELX_P HELX_P4 AA4 PRO A 202 ? VAL A 206 ? PRO A 223 VAL A 227 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 7 SG ? ? A CYS 22 A CYS 28 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf2 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 26 A CYS 35 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf3 disulf ? ? A CYS 108 SG ? ? ? 1_555 A CYS 109 SG ? ? A CYS 129 A CYS 130 1_555 ? ? ? ? ? ? ? 2.070 ? ? disulf4 disulf ? ? A CYS 161 SG ? ? ? 1_555 A CYS 196 SG ? ? A CYS 182 A CYS 217 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf5 disulf ? ? A CYS 163 SG ? ? ? 1_555 A CYS 216 SG ? ? A CYS 184 A CYS 237 1_555 ? ? ? ? ? ? ? 2.039 ? ? covale1 covale both ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.402 sing ? covale2 covale both ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 2 B FUC 3 1_555 ? ? ? ? ? ? ? 1.387 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA1 7 8 ? parallel AA1 8 9 ? parallel AA1 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 6 ? SER A 8 ? SER A 27 SER A 29 AA1 2 THR A 11 ? ASP A 13 ? THR A 32 ASP A 34 AA1 3 ILE A 32 ? TYR A 34 ? ILE A 53 TYR A 55 AA1 4 GLU A 56 ? TYR A 58 ? GLU A 77 TYR A 79 AA1 5 VAL A 80 ? ASP A 82 ? VAL A 101 ASP A 103 AA1 6 GLU A 104 ? PHE A 106 ? GLU A 125 PHE A 127 AA1 7 HIS A 127 ? ALA A 129 ? HIS A 148 ALA A 150 AA1 8 HIS A 151 ? TYR A 153 ? HIS A 172 TYR A 174 AA1 9 ALA A 180 ? TRP A 183 ? ALA A 201 TRP A 204 AA1 10 ALA A 187 ? ASN A 189 ? ALA A 208 ASN A 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 6 ? N SER A 27 O ASP A 13 ? O ASP A 34 AA1 2 3 N VAL A 12 ? N VAL A 33 O ILE A 32 ? O ILE A 53 AA1 3 4 N LEU A 33 ? N LEU A 54 O GLU A 56 ? O GLU A 77 AA1 4 5 N LEU A 57 ? N LEU A 78 O VAL A 80 ? O VAL A 101 AA1 5 6 N LEU A 81 ? N LEU A 102 O GLU A 104 ? O GLU A 125 AA1 6 7 N LEU A 105 ? N LEU A 126 O ALA A 129 ? O ALA A 150 AA1 7 8 N LEU A 128 ? N LEU A 149 O TYR A 153 ? O TYR A 174 AA1 8 9 N ALA A 152 ? N ALA A 173 O MET A 181 ? O MET A 202 AA1 9 10 N ARG A 182 ? N ARG A 203 O VAL A 188 ? O VAL A 209 # _atom_sites.entry_id 5UFF _atom_sites.fract_transf_matrix[1][1] 0.025019 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] -0.001884 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021051 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017509 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 22 22 CYS CYS A . n A 1 2 PRO 2 23 23 PRO PRO A . n A 1 3 SER 3 24 24 SER SER A . n A 1 4 GLN 4 25 25 GLN GLN A . n A 1 5 CYS 5 26 26 CYS CYS A . n A 1 6 SER 6 27 27 SER SER A . n A 1 7 CYS 7 28 28 CYS CYS A . n A 1 8 SER 8 29 29 SER SER A . n A 1 9 GLY 9 30 30 GLY GLY A . n A 1 10 THR 10 31 31 THR THR A . n A 1 11 THR 11 32 32 THR THR A . n A 1 12 VAL 12 33 33 VAL VAL A . n A 1 13 ASP 13 34 34 ASP ASP A . n A 1 14 CYS 14 35 35 CYS CYS A . n A 1 15 ARG 15 36 36 ARG ARG A . n A 1 16 SER 16 37 37 SER SER A . n A 1 17 LYS 17 38 38 LYS LYS A . n A 1 18 ARG 18 39 39 ARG ARG A . n A 1 19 HIS 19 40 40 HIS HIS A . n A 1 20 ALA 20 41 41 ALA ALA A . n A 1 21 SER 21 42 42 SER SER A . n A 1 22 VAL 22 43 43 VAL VAL A . n A 1 23 PRO 23 44 44 PRO PRO A . n A 1 24 ALA 24 45 45 ALA ALA A . n A 1 25 GLY 25 46 46 GLY GLY A . n A 1 26 ILE 26 47 47 ILE ILE A . n A 1 27 PRO 27 48 48 PRO PRO A . n A 1 28 THR 28 49 49 THR THR A . n A 1 29 ASN 29 50 50 ASN ASN A . n A 1 30 ALA 30 51 51 ALA ALA A . n A 1 31 GLN 31 52 52 GLN GLN A . n A 1 32 ILE 32 53 53 ILE ILE A . n A 1 33 LEU 33 54 54 LEU LEU A . n A 1 34 TYR 34 55 55 TYR TYR A . n A 1 35 LEU 35 56 56 LEU LEU A . n A 1 36 HIS 36 57 57 HIS HIS A . n A 1 37 ASP 37 58 58 ASP ASP A . n A 1 38 ASN 38 59 59 ASN ASN A . n A 1 39 GLN 39 60 60 GLN GLN A . n A 1 40 ILE 40 61 61 ILE ILE A . n A 1 41 THR 41 62 62 THR THR A . n A 1 42 LYS 42 63 63 LYS LYS A . n A 1 43 LEU 43 64 64 LEU LEU A . n A 1 44 GLU 44 65 65 GLU GLU A . n A 1 45 PRO 45 66 66 PRO PRO A . n A 1 46 GLY 46 67 67 GLY GLY A . n A 1 47 VAL 47 68 68 VAL VAL A . n A 1 48 PHE 48 69 69 PHE PHE A . n A 1 49 ASP 49 70 70 ASP ASP A . n A 1 50 SER 50 71 71 SER SER A . n A 1 51 LEU 51 72 72 LEU LEU A . n A 1 52 ILE 52 73 73 ILE ILE A . n A 1 53 ASN 53 74 74 ASN ASN A . n A 1 54 LEU 54 75 75 LEU LEU A . n A 1 55 LYS 55 76 76 LYS LYS A . n A 1 56 GLU 56 77 77 GLU GLU A . n A 1 57 LEU 57 78 78 LEU LEU A . n A 1 58 TYR 58 79 79 TYR TYR A . n A 1 59 LEU 59 80 80 LEU LEU A . n A 1 60 GLY 60 81 81 GLY GLY A . n A 1 61 SER 61 82 82 SER SER A . n A 1 62 ASN 62 83 83 ASN ASN A . n A 1 63 GLN 63 84 84 GLN GLN A . n A 1 64 LEU 64 85 85 LEU LEU A . n A 1 65 GLY 65 86 86 GLY GLY A . n A 1 66 ALA 66 87 87 ALA ALA A . n A 1 67 LEU 67 88 88 LEU LEU A . n A 1 68 PRO 68 89 89 PRO PRO A . n A 1 69 VAL 69 90 90 VAL VAL A . n A 1 70 GLY 70 91 91 GLY GLY A . n A 1 71 VAL 71 92 92 VAL VAL A . n A 1 72 PHE 72 93 93 PHE PHE A . n A 1 73 ASP 73 94 94 ASP ASP A . n A 1 74 SER 74 95 95 SER SER A . n A 1 75 LEU 75 96 96 LEU LEU A . n A 1 76 THR 76 97 97 THR THR A . n A 1 77 GLN 77 98 98 GLN GLN A . n A 1 78 LEU 78 99 99 LEU LEU A . n A 1 79 THR 79 100 100 THR THR A . n A 1 80 VAL 80 101 101 VAL VAL A . n A 1 81 LEU 81 102 102 LEU LEU A . n A 1 82 ASP 82 103 103 ASP ASP A . n A 1 83 LEU 83 104 104 LEU LEU A . n A 1 84 GLY 84 105 105 GLY GLY A . n A 1 85 THR 85 106 106 THR THR A . n A 1 86 ASN 86 107 107 ASN ASN A . n A 1 87 GLN 87 108 108 GLN GLN A . n A 1 88 LEU 88 109 109 LEU LEU A . n A 1 89 THR 89 110 110 THR THR A . n A 1 90 VAL 90 111 111 VAL VAL A . n A 1 91 LEU 91 112 112 LEU LEU A . n A 1 92 PRO 92 113 113 PRO PRO A . n A 1 93 SER 93 114 114 SER SER A . n A 1 94 ALA 94 115 115 ALA ALA A . n A 1 95 VAL 95 116 116 VAL VAL A . n A 1 96 PHE 96 117 117 PHE PHE A . n A 1 97 ASP 97 118 118 ASP ASP A . n A 1 98 ARG 98 119 119 ARG ARG A . n A 1 99 LEU 99 120 120 LEU LEU A . n A 1 100 VAL 100 121 121 VAL VAL A . n A 1 101 HIS 101 122 122 HIS HIS A . n A 1 102 LEU 102 123 123 LEU LEU A . n A 1 103 LYS 103 124 124 LYS LYS A . n A 1 104 GLU 104 125 125 GLU GLU A . n A 1 105 LEU 105 126 126 LEU LEU A . n A 1 106 PHE 106 127 127 PHE PHE A . n A 1 107 MET 107 128 128 MET MET A . n A 1 108 CYS 108 129 129 CYS CYS A . n A 1 109 CYS 109 130 130 CYS CYS A . n A 1 110 ASN 110 131 131 ASN ASN A . n A 1 111 LYS 111 132 132 LYS LYS A . n A 1 112 LEU 112 133 133 LEU LEU A . n A 1 113 THR 113 134 134 THR THR A . n A 1 114 GLU 114 135 135 GLU GLU A . n A 1 115 LEU 115 136 136 LEU LEU A . n A 1 116 PRO 116 137 137 PRO PRO A . n A 1 117 ARG 117 138 138 ARG ARG A . n A 1 118 GLY 118 139 139 GLY GLY A . n A 1 119 ILE 119 140 140 ILE ILE A . n A 1 120 GLU 120 141 141 GLU GLU A . n A 1 121 ARG 121 142 142 ARG ARG A . n A 1 122 LEU 122 143 143 LEU LEU A . n A 1 123 THR 123 144 144 THR THR A . n A 1 124 HIS 124 145 145 HIS HIS A . n A 1 125 LEU 125 146 146 LEU LEU A . n A 1 126 THR 126 147 147 THR THR A . n A 1 127 HIS 127 148 148 HIS HIS A . n A 1 128 LEU 128 149 149 LEU LEU A . n A 1 129 ALA 129 150 150 ALA ALA A . n A 1 130 LEU 130 151 151 LEU LEU A . n A 1 131 ASP 131 152 152 ASP ASP A . n A 1 132 GLN 132 153 153 GLN GLN A . n A 1 133 ASN 133 154 154 ASN ASN A . n A 1 134 GLN 134 155 155 GLN GLN A . n A 1 135 LEU 135 156 156 LEU LEU A . n A 1 136 LYS 136 157 157 LYS LYS A . n A 1 137 SER 137 158 158 SER SER A . n A 1 138 ILE 138 159 159 ILE ILE A . n A 1 139 PRO 139 160 160 PRO PRO A . n A 1 140 HIS 140 161 161 HIS HIS A . n A 1 141 GLY 141 162 162 GLY GLY A . n A 1 142 ALA 142 163 163 ALA ALA A . n A 1 143 PHE 143 164 164 PHE PHE A . n A 1 144 ASP 144 165 165 ASP ASP A . n A 1 145 ARG 145 166 166 ARG ARG A . n A 1 146 LEU 146 167 167 LEU LEU A . n A 1 147 SER 147 168 168 SER SER A . n A 1 148 SER 148 169 169 SER SER A . n A 1 149 LEU 149 170 170 LEU LEU A . n A 1 150 THR 150 171 171 THR THR A . n A 1 151 HIS 151 172 172 HIS HIS A . n A 1 152 ALA 152 173 173 ALA ALA A . n A 1 153 TYR 153 174 174 TYR TYR A . n A 1 154 LEU 154 175 175 LEU LEU A . n A 1 155 PHE 155 176 176 PHE PHE A . n A 1 156 GLY 156 177 177 GLY GLY A . n A 1 157 ASN 157 178 178 ASN ASN A . n A 1 158 PRO 158 179 179 PRO PRO A . n A 1 159 TRP 159 180 180 TRP TRP A . n A 1 160 ASP 160 181 181 ASP ASP A . n A 1 161 CYS 161 182 182 CYS CYS A . n A 1 162 GLU 162 183 183 GLU GLU A . n A 1 163 CYS 163 184 184 CYS CYS A . n A 1 164 ARG 164 185 185 ARG ARG A . n A 1 165 ASP 165 186 186 ASP ASP A . n A 1 166 ILE 166 187 187 ILE ILE A . n A 1 167 MET 167 188 188 MET MET A . n A 1 168 TYR 168 189 189 TYR TYR A . n A 1 169 LEU 169 190 190 LEU LEU A . n A 1 170 ARG 170 191 191 ARG ARG A . n A 1 171 ASN 171 192 192 ASN ASN A . n A 1 172 TRP 172 193 193 TRP TRP A . n A 1 173 VAL 173 194 194 VAL VAL A . n A 1 174 ALA 174 195 195 ALA ALA A . n A 1 175 ASP 175 196 196 ASP ASP A . n A 1 176 HIS 176 197 197 HIS HIS A . n A 1 177 THR 177 198 198 THR THR A . n A 1 178 SER 178 199 199 SER SER A . n A 1 179 ILE 179 200 200 ILE ILE A . n A 1 180 ALA 180 201 201 ALA ALA A . n A 1 181 MET 181 202 202 MET MET A . n A 1 182 ARG 182 203 203 ARG ARG A . n A 1 183 TRP 183 204 204 TRP TRP A . n A 1 184 ASP 184 205 205 ASP ASP A . n A 1 185 GLY 185 206 206 GLY GLY A . n A 1 186 LYS 186 207 207 LYS LYS A . n A 1 187 ALA 187 208 208 ALA ALA A . n A 1 188 VAL 188 209 209 VAL VAL A . n A 1 189 ASN 189 210 210 ASN ASN A . n A 1 190 ASP 190 211 211 ASP ASP A . n A 1 191 PRO 191 212 212 PRO PRO A . n A 1 192 ASP 192 213 213 ASP ASP A . n A 1 193 SER 193 214 214 SER SER A . n A 1 194 ALA 194 215 215 ALA ALA A . n A 1 195 LYS 195 216 216 LYS LYS A . n A 1 196 CYS 196 217 217 CYS CYS A . n A 1 197 ALA 197 218 218 ALA ALA A . n A 1 198 GLY 198 219 219 GLY GLY A . n A 1 199 THR 199 220 220 THR THR A . n A 1 200 ASN 200 221 221 ASN ASN A . n A 1 201 THR 201 222 222 THR THR A . n A 1 202 PRO 202 223 223 PRO PRO A . n A 1 203 VAL 203 224 224 VAL VAL A . n A 1 204 ARG 204 225 225 ARG ARG A . n A 1 205 ALA 205 226 226 ALA ALA A . n A 1 206 VAL 206 227 227 VAL VAL A . n A 1 207 THR 207 228 228 THR THR A . n A 1 208 GLU 208 229 229 GLU GLU A . n A 1 209 ALA 209 230 230 ALA ALA A . n A 1 210 SER 210 231 231 SER SER A . n A 1 211 THR 211 232 232 THR THR A . n A 1 212 SER 212 233 233 SER SER A . n A 1 213 PRO 213 234 234 PRO PRO A . n A 1 214 SER 214 235 235 SER SER A . n A 1 215 LYS 215 236 236 LYS LYS A . n A 1 216 CYS 216 237 237 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 401 12 HOH HOH A . C 3 HOH 2 402 62 HOH HOH A . C 3 HOH 3 403 53 HOH HOH A . C 3 HOH 4 404 10 HOH HOH A . C 3 HOH 5 405 48 HOH HOH A . C 3 HOH 6 406 39 HOH HOH A . C 3 HOH 7 407 55 HOH HOH A . C 3 HOH 8 408 52 HOH HOH A . C 3 HOH 9 409 3 HOH HOH A . C 3 HOH 10 410 19 HOH HOH A . C 3 HOH 11 411 35 HOH HOH A . C 3 HOH 12 412 24 HOH HOH A . C 3 HOH 13 413 14 HOH HOH A . C 3 HOH 14 414 6 HOH HOH A . C 3 HOH 15 415 32 HOH HOH A . C 3 HOH 16 416 20 HOH HOH A . C 3 HOH 17 417 58 HOH HOH A . C 3 HOH 18 418 57 HOH HOH A . C 3 HOH 19 419 43 HOH HOH A . C 3 HOH 20 420 5 HOH HOH A . C 3 HOH 21 421 25 HOH HOH A . C 3 HOH 22 422 21 HOH HOH A . C 3 HOH 23 423 60 HOH HOH A . C 3 HOH 24 424 4 HOH HOH A . C 3 HOH 25 425 56 HOH HOH A . C 3 HOH 26 426 9 HOH HOH A . C 3 HOH 27 427 40 HOH HOH A . C 3 HOH 28 428 61 HOH HOH A . C 3 HOH 29 429 11 HOH HOH A . C 3 HOH 30 430 63 HOH HOH A . C 3 HOH 31 431 1 HOH HOH A . C 3 HOH 32 432 51 HOH HOH A . C 3 HOH 33 433 29 HOH HOH A . C 3 HOH 34 434 30 HOH HOH A . C 3 HOH 35 435 42 HOH HOH A . C 3 HOH 36 436 26 HOH HOH A . C 3 HOH 37 437 28 HOH HOH A . C 3 HOH 38 438 45 HOH HOH A . C 3 HOH 39 439 54 HOH HOH A . C 3 HOH 40 440 13 HOH HOH A . C 3 HOH 41 441 49 HOH HOH A . C 3 HOH 42 442 15 HOH HOH A . C 3 HOH 43 443 17 HOH HOH A . C 3 HOH 44 444 2 HOH HOH A . C 3 HOH 45 445 47 HOH HOH A . C 3 HOH 46 446 31 HOH HOH A . C 3 HOH 47 447 27 HOH HOH A . C 3 HOH 48 448 18 HOH HOH A . C 3 HOH 49 449 8 HOH HOH A . C 3 HOH 50 450 36 HOH HOH A . C 3 HOH 51 451 37 HOH HOH A . C 3 HOH 52 452 34 HOH HOH A . C 3 HOH 53 453 7 HOH HOH A . C 3 HOH 54 454 33 HOH HOH A . C 3 HOH 55 455 16 HOH HOH A . C 3 HOH 56 456 23 HOH HOH A . C 3 HOH 57 457 41 HOH HOH A . C 3 HOH 58 458 38 HOH HOH A . C 3 HOH 59 459 50 HOH HOH A . C 3 HOH 60 460 44 HOH HOH A . C 3 HOH 61 461 59 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900070 _pdbx_molecule_features.name "2'-fucosyllactose" _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Glycan component' _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900070 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 9890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-18 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2019-12-11 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-10-04 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' entity_name_com 7 4 'Structure model' pdbx_branch_scheme 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_branch 10 4 'Structure model' pdbx_entity_branch_descriptor 11 4 'Structure model' pdbx_entity_branch_link 12 4 'Structure model' pdbx_entity_branch_list 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_molecule_features 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_conn_type 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen 20 5 'Structure model' chem_comp 21 5 'Structure model' chem_comp_atom 22 5 'Structure model' chem_comp_bond 23 5 'Structure model' database_2 24 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_ISSN' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 4 'Structure model' '_atom_site.B_iso_or_equiv' 6 4 'Structure model' '_atom_site.Cartn_x' 7 4 'Structure model' '_atom_site.Cartn_y' 8 4 'Structure model' '_atom_site.Cartn_z' 9 4 'Structure model' '_atom_site.auth_asym_id' 10 4 'Structure model' '_atom_site.auth_atom_id' 11 4 'Structure model' '_atom_site.auth_comp_id' 12 4 'Structure model' '_atom_site.auth_seq_id' 13 4 'Structure model' '_atom_site.label_atom_id' 14 4 'Structure model' '_atom_site.label_comp_id' 15 4 'Structure model' '_atom_site.type_symbol' 16 4 'Structure model' '_chem_comp.formula' 17 4 'Structure model' '_chem_comp.formula_weight' 18 4 'Structure model' '_chem_comp.id' 19 4 'Structure model' '_chem_comp.mon_nstd_flag' 20 4 'Structure model' '_chem_comp.name' 21 4 'Structure model' '_chem_comp.type' 22 4 'Structure model' '_entity.pdbx_description' 23 4 'Structure model' '_entity.src_method' 24 4 'Structure model' '_entity.type' 25 5 'Structure model' '_chem_comp.pdbx_synonyms' 26 5 'Structure model' '_database_2.pdbx_DOI' 27 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLN 60 ? ? O A HOH 401 ? ? 2.04 2 1 OG1 A THR 49 ? ? O A HOH 402 ? ? 2.10 3 1 O A HOH 403 ? ? O A HOH 424 ? ? 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 423 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 447 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_545 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 58 ? ? 77.69 52.97 2 1 LEU A 72 ? ? -90.81 56.54 3 1 ASN A 83 ? ? -131.43 -157.66 4 1 THR A 106 ? ? 72.43 56.41 5 1 ASN A 107 ? ? -129.67 -160.55 6 1 THR A 110 ? ? -121.85 -58.67 7 1 ASN A 131 ? ? -110.14 -154.95 8 1 ASN A 154 ? ? -113.53 -129.65 9 1 GLN A 155 ? ? -148.24 41.37 10 1 ASP A 205 ? ? -103.45 67.95 11 1 LYS A 236 ? ? -148.20 42.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 63 ? CD ? A LYS 42 CD 2 1 Y 1 A LYS 63 ? CE ? A LYS 42 CE 3 1 Y 1 A LYS 63 ? NZ ? A LYS 42 NZ 4 1 Y 1 A GLN 98 ? CD ? A GLN 77 CD 5 1 Y 1 A GLN 98 ? OE1 ? A GLN 77 OE1 6 1 Y 1 A GLN 98 ? NE2 ? A GLN 77 NE2 7 1 Y 1 A ASP 118 ? CG ? A ASP 97 CG 8 1 Y 1 A ASP 118 ? OD1 ? A ASP 97 OD1 9 1 Y 1 A ASP 118 ? OD2 ? A ASP 97 OD2 10 1 Y 1 A LYS 124 ? CE ? A LYS 103 CE 11 1 Y 1 A LYS 124 ? NZ ? A LYS 103 NZ 12 1 Y 1 A LYS 132 ? CE ? A LYS 111 CE 13 1 Y 1 A LYS 132 ? NZ ? A LYS 111 NZ 14 1 Y 1 A GLU 135 ? CG ? A GLU 114 CG 15 1 Y 1 A GLU 135 ? CD ? A GLU 114 CD 16 1 Y 1 A GLU 135 ? OE1 ? A GLU 114 OE1 17 1 Y 1 A GLU 135 ? OE2 ? A GLU 114 OE2 18 1 Y 1 A ARG 138 ? CD ? A ARG 117 CD 19 1 Y 1 A ARG 138 ? NE ? A ARG 117 NE 20 1 Y 1 A ARG 138 ? CZ ? A ARG 117 CZ 21 1 Y 1 A ARG 138 ? NH1 ? A ARG 117 NH1 22 1 Y 1 A ARG 138 ? NH2 ? A ARG 117 NH2 23 1 Y 1 A GLU 141 ? OE1 ? A GLU 120 OE1 24 1 Y 1 A GLU 141 ? OE2 ? A GLU 120 OE2 25 1 Y 1 A GLN 155 ? OE1 ? A GLN 134 OE1 26 1 Y 1 A GLN 155 ? NE2 ? A GLN 134 NE2 27 1 Y 1 A LYS 157 ? CD ? A LYS 136 CD 28 1 Y 1 A LYS 157 ? CE ? A LYS 136 CE 29 1 Y 1 A LYS 157 ? NZ ? A LYS 136 NZ 30 1 Y 1 A ARG 185 ? CG ? A ARG 164 CG 31 1 Y 1 A ARG 185 ? CD ? A ARG 164 CD 32 1 Y 1 A ARG 185 ? NE ? A ARG 164 NE 33 1 Y 1 A ARG 185 ? CZ ? A ARG 164 CZ 34 1 Y 1 A ARG 185 ? NH1 ? A ARG 164 NH1 35 1 Y 1 A ARG 185 ? NH2 ? A ARG 164 NH2 36 1 Y 1 A LYS 216 ? NZ ? A LYS 195 NZ 37 1 Y 1 A GLU 229 ? OE1 ? A GLU 208 OE1 38 1 Y 1 A GLU 229 ? OE2 ? A GLU 208 OE2 39 1 Y 1 A LYS 236 ? CG ? A LYS 215 CG 40 1 Y 1 A LYS 236 ? CD ? A LYS 215 CD 41 1 Y 1 A LYS 236 ? CE ? A LYS 215 CE 42 1 Y 1 A LYS 236 ? NZ ? A LYS 215 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BGC C2 C N R 74 BGC C3 C N S 75 BGC C4 C N S 76 BGC C5 C N R 77 BGC C6 C N N 78 BGC C1 C N R 79 BGC O1 O N N 80 BGC O2 O N N 81 BGC O3 O N N 82 BGC O4 O N N 83 BGC O5 O N N 84 BGC O6 O N N 85 BGC H2 H N N 86 BGC H3 H N N 87 BGC H4 H N N 88 BGC H5 H N N 89 BGC H61 H N N 90 BGC H62 H N N 91 BGC H1 H N N 92 BGC HO1 H N N 93 BGC HO2 H N N 94 BGC HO3 H N N 95 BGC HO4 H N N 96 BGC HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 FUC C1 C N R 112 FUC C2 C N S 113 FUC C3 C N R 114 FUC C4 C N S 115 FUC C5 C N S 116 FUC C6 C N N 117 FUC O1 O N N 118 FUC O2 O N N 119 FUC O3 O N N 120 FUC O4 O N N 121 FUC O5 O N N 122 FUC H1 H N N 123 FUC H2 H N N 124 FUC H3 H N N 125 FUC H4 H N N 126 FUC H5 H N N 127 FUC H61 H N N 128 FUC H62 H N N 129 FUC H63 H N N 130 FUC HO1 H N N 131 FUC HO2 H N N 132 FUC HO3 H N N 133 FUC HO4 H N N 134 GAL C1 C N R 135 GAL C2 C N R 136 GAL C3 C N S 137 GAL C4 C N R 138 GAL C5 C N R 139 GAL C6 C N N 140 GAL O1 O N N 141 GAL O2 O N N 142 GAL O3 O N N 143 GAL O4 O N N 144 GAL O5 O N N 145 GAL O6 O N N 146 GAL H1 H N N 147 GAL H2 H N N 148 GAL H3 H N N 149 GAL H4 H N N 150 GAL H5 H N N 151 GAL H61 H N N 152 GAL H62 H N N 153 GAL HO1 H N N 154 GAL HO2 H N N 155 GAL HO3 H N N 156 GAL HO4 H N N 157 GAL HO6 H N N 158 GLN N N N N 159 GLN CA C N S 160 GLN C C N N 161 GLN O O N N 162 GLN CB C N N 163 GLN CG C N N 164 GLN CD C N N 165 GLN OE1 O N N 166 GLN NE2 N N N 167 GLN OXT O N N 168 GLN H H N N 169 GLN H2 H N N 170 GLN HA H N N 171 GLN HB2 H N N 172 GLN HB3 H N N 173 GLN HG2 H N N 174 GLN HG3 H N N 175 GLN HE21 H N N 176 GLN HE22 H N N 177 GLN HXT H N N 178 GLU N N N N 179 GLU CA C N S 180 GLU C C N N 181 GLU O O N N 182 GLU CB C N N 183 GLU CG C N N 184 GLU CD C N N 185 GLU OE1 O N N 186 GLU OE2 O N N 187 GLU OXT O N N 188 GLU H H N N 189 GLU H2 H N N 190 GLU HA H N N 191 GLU HB2 H N N 192 GLU HB3 H N N 193 GLU HG2 H N N 194 GLU HG3 H N N 195 GLU HE2 H N N 196 GLU HXT H N N 197 GLY N N N N 198 GLY CA C N N 199 GLY C C N N 200 GLY O O N N 201 GLY OXT O N N 202 GLY H H N N 203 GLY H2 H N N 204 GLY HA2 H N N 205 GLY HA3 H N N 206 GLY HXT H N N 207 HIS N N N N 208 HIS CA C N S 209 HIS C C N N 210 HIS O O N N 211 HIS CB C N N 212 HIS CG C Y N 213 HIS ND1 N Y N 214 HIS CD2 C Y N 215 HIS CE1 C Y N 216 HIS NE2 N Y N 217 HIS OXT O N N 218 HIS H H N N 219 HIS H2 H N N 220 HIS HA H N N 221 HIS HB2 H N N 222 HIS HB3 H N N 223 HIS HD1 H N N 224 HIS HD2 H N N 225 HIS HE1 H N N 226 HIS HE2 H N N 227 HIS HXT H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 ILE N N N N 232 ILE CA C N S 233 ILE C C N N 234 ILE O O N N 235 ILE CB C N S 236 ILE CG1 C N N 237 ILE CG2 C N N 238 ILE CD1 C N N 239 ILE OXT O N N 240 ILE H H N N 241 ILE H2 H N N 242 ILE HA H N N 243 ILE HB H N N 244 ILE HG12 H N N 245 ILE HG13 H N N 246 ILE HG21 H N N 247 ILE HG22 H N N 248 ILE HG23 H N N 249 ILE HD11 H N N 250 ILE HD12 H N N 251 ILE HD13 H N N 252 ILE HXT H N N 253 LEU N N N N 254 LEU CA C N S 255 LEU C C N N 256 LEU O O N N 257 LEU CB C N N 258 LEU CG C N N 259 LEU CD1 C N N 260 LEU CD2 C N N 261 LEU OXT O N N 262 LEU H H N N 263 LEU H2 H N N 264 LEU HA H N N 265 LEU HB2 H N N 266 LEU HB3 H N N 267 LEU HG H N N 268 LEU HD11 H N N 269 LEU HD12 H N N 270 LEU HD13 H N N 271 LEU HD21 H N N 272 LEU HD22 H N N 273 LEU HD23 H N N 274 LEU HXT H N N 275 LYS N N N N 276 LYS CA C N S 277 LYS C C N N 278 LYS O O N N 279 LYS CB C N N 280 LYS CG C N N 281 LYS CD C N N 282 LYS CE C N N 283 LYS NZ N N N 284 LYS OXT O N N 285 LYS H H N N 286 LYS H2 H N N 287 LYS HA H N N 288 LYS HB2 H N N 289 LYS HB3 H N N 290 LYS HG2 H N N 291 LYS HG3 H N N 292 LYS HD2 H N N 293 LYS HD3 H N N 294 LYS HE2 H N N 295 LYS HE3 H N N 296 LYS HZ1 H N N 297 LYS HZ2 H N N 298 LYS HZ3 H N N 299 LYS HXT H N N 300 MET N N N N 301 MET CA C N S 302 MET C C N N 303 MET O O N N 304 MET CB C N N 305 MET CG C N N 306 MET SD S N N 307 MET CE C N N 308 MET OXT O N N 309 MET H H N N 310 MET H2 H N N 311 MET HA H N N 312 MET HB2 H N N 313 MET HB3 H N N 314 MET HG2 H N N 315 MET HG3 H N N 316 MET HE1 H N N 317 MET HE2 H N N 318 MET HE3 H N N 319 MET HXT H N N 320 PHE N N N N 321 PHE CA C N S 322 PHE C C N N 323 PHE O O N N 324 PHE CB C N N 325 PHE CG C Y N 326 PHE CD1 C Y N 327 PHE CD2 C Y N 328 PHE CE1 C Y N 329 PHE CE2 C Y N 330 PHE CZ C Y N 331 PHE OXT O N N 332 PHE H H N N 333 PHE H2 H N N 334 PHE HA H N N 335 PHE HB2 H N N 336 PHE HB3 H N N 337 PHE HD1 H N N 338 PHE HD2 H N N 339 PHE HE1 H N N 340 PHE HE2 H N N 341 PHE HZ H N N 342 PHE HXT H N N 343 PRO N N N N 344 PRO CA C N S 345 PRO C C N N 346 PRO O O N N 347 PRO CB C N N 348 PRO CG C N N 349 PRO CD C N N 350 PRO OXT O N N 351 PRO H H N N 352 PRO HA H N N 353 PRO HB2 H N N 354 PRO HB3 H N N 355 PRO HG2 H N N 356 PRO HG3 H N N 357 PRO HD2 H N N 358 PRO HD3 H N N 359 PRO HXT H N N 360 SER N N N N 361 SER CA C N S 362 SER C C N N 363 SER O O N N 364 SER CB C N N 365 SER OG O N N 366 SER OXT O N N 367 SER H H N N 368 SER H2 H N N 369 SER HA H N N 370 SER HB2 H N N 371 SER HB3 H N N 372 SER HG H N N 373 SER HXT H N N 374 THR N N N N 375 THR CA C N S 376 THR C C N N 377 THR O O N N 378 THR CB C N R 379 THR OG1 O N N 380 THR CG2 C N N 381 THR OXT O N N 382 THR H H N N 383 THR H2 H N N 384 THR HA H N N 385 THR HB H N N 386 THR HG1 H N N 387 THR HG21 H N N 388 THR HG22 H N N 389 THR HG23 H N N 390 THR HXT H N N 391 TRP N N N N 392 TRP CA C N S 393 TRP C C N N 394 TRP O O N N 395 TRP CB C N N 396 TRP CG C Y N 397 TRP CD1 C Y N 398 TRP CD2 C Y N 399 TRP NE1 N Y N 400 TRP CE2 C Y N 401 TRP CE3 C Y N 402 TRP CZ2 C Y N 403 TRP CZ3 C Y N 404 TRP CH2 C Y N 405 TRP OXT O N N 406 TRP H H N N 407 TRP H2 H N N 408 TRP HA H N N 409 TRP HB2 H N N 410 TRP HB3 H N N 411 TRP HD1 H N N 412 TRP HE1 H N N 413 TRP HE3 H N N 414 TRP HZ2 H N N 415 TRP HZ3 H N N 416 TRP HH2 H N N 417 TRP HXT H N N 418 TYR N N N N 419 TYR CA C N S 420 TYR C C N N 421 TYR O O N N 422 TYR CB C N N 423 TYR CG C Y N 424 TYR CD1 C Y N 425 TYR CD2 C Y N 426 TYR CE1 C Y N 427 TYR CE2 C Y N 428 TYR CZ C Y N 429 TYR OH O N N 430 TYR OXT O N N 431 TYR H H N N 432 TYR H2 H N N 433 TYR HA H N N 434 TYR HB2 H N N 435 TYR HB3 H N N 436 TYR HD1 H N N 437 TYR HD2 H N N 438 TYR HE1 H N N 439 TYR HE2 H N N 440 TYR HH H N N 441 TYR HXT H N N 442 VAL N N N N 443 VAL CA C N S 444 VAL C C N N 445 VAL O O N N 446 VAL CB C N N 447 VAL CG1 C N N 448 VAL CG2 C N N 449 VAL OXT O N N 450 VAL H H N N 451 VAL H2 H N N 452 VAL HA H N N 453 VAL HB H N N 454 VAL HG11 H N N 455 VAL HG12 H N N 456 VAL HG13 H N N 457 VAL HG21 H N N 458 VAL HG22 H N N 459 VAL HG23 H N N 460 VAL HXT H N N 461 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BGC C2 C3 sing N N 70 BGC C2 C1 sing N N 71 BGC C2 O2 sing N N 72 BGC C2 H2 sing N N 73 BGC C3 C4 sing N N 74 BGC C3 O3 sing N N 75 BGC C3 H3 sing N N 76 BGC C4 C5 sing N N 77 BGC C4 O4 sing N N 78 BGC C4 H4 sing N N 79 BGC C5 C6 sing N N 80 BGC C5 O5 sing N N 81 BGC C5 H5 sing N N 82 BGC C6 O6 sing N N 83 BGC C6 H61 sing N N 84 BGC C6 H62 sing N N 85 BGC C1 O1 sing N N 86 BGC C1 O5 sing N N 87 BGC C1 H1 sing N N 88 BGC O1 HO1 sing N N 89 BGC O2 HO2 sing N N 90 BGC O3 HO3 sing N N 91 BGC O4 HO4 sing N N 92 BGC O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 FUC C1 C2 sing N N 107 FUC C1 O1 sing N N 108 FUC C1 O5 sing N N 109 FUC C1 H1 sing N N 110 FUC C2 C3 sing N N 111 FUC C2 O2 sing N N 112 FUC C2 H2 sing N N 113 FUC C3 C4 sing N N 114 FUC C3 O3 sing N N 115 FUC C3 H3 sing N N 116 FUC C4 C5 sing N N 117 FUC C4 O4 sing N N 118 FUC C4 H4 sing N N 119 FUC C5 C6 sing N N 120 FUC C5 O5 sing N N 121 FUC C5 H5 sing N N 122 FUC C6 H61 sing N N 123 FUC C6 H62 sing N N 124 FUC C6 H63 sing N N 125 FUC O1 HO1 sing N N 126 FUC O2 HO2 sing N N 127 FUC O3 HO3 sing N N 128 FUC O4 HO4 sing N N 129 GAL C1 C2 sing N N 130 GAL C1 O1 sing N N 131 GAL C1 O5 sing N N 132 GAL C1 H1 sing N N 133 GAL C2 C3 sing N N 134 GAL C2 O2 sing N N 135 GAL C2 H2 sing N N 136 GAL C3 C4 sing N N 137 GAL C3 O3 sing N N 138 GAL C3 H3 sing N N 139 GAL C4 C5 sing N N 140 GAL C4 O4 sing N N 141 GAL C4 H4 sing N N 142 GAL C5 C6 sing N N 143 GAL C5 O5 sing N N 144 GAL C5 H5 sing N N 145 GAL C6 O6 sing N N 146 GAL C6 H61 sing N N 147 GAL C6 H62 sing N N 148 GAL O1 HO1 sing N N 149 GAL O2 HO2 sing N N 150 GAL O3 HO3 sing N N 151 GAL O4 HO4 sing N N 152 GAL O6 HO6 sing N N 153 GLN N CA sing N N 154 GLN N H sing N N 155 GLN N H2 sing N N 156 GLN CA C sing N N 157 GLN CA CB sing N N 158 GLN CA HA sing N N 159 GLN C O doub N N 160 GLN C OXT sing N N 161 GLN CB CG sing N N 162 GLN CB HB2 sing N N 163 GLN CB HB3 sing N N 164 GLN CG CD sing N N 165 GLN CG HG2 sing N N 166 GLN CG HG3 sing N N 167 GLN CD OE1 doub N N 168 GLN CD NE2 sing N N 169 GLN NE2 HE21 sing N N 170 GLN NE2 HE22 sing N N 171 GLN OXT HXT sing N N 172 GLU N CA sing N N 173 GLU N H sing N N 174 GLU N H2 sing N N 175 GLU CA C sing N N 176 GLU CA CB sing N N 177 GLU CA HA sing N N 178 GLU C O doub N N 179 GLU C OXT sing N N 180 GLU CB CG sing N N 181 GLU CB HB2 sing N N 182 GLU CB HB3 sing N N 183 GLU CG CD sing N N 184 GLU CG HG2 sing N N 185 GLU CG HG3 sing N N 186 GLU CD OE1 doub N N 187 GLU CD OE2 sing N N 188 GLU OE2 HE2 sing N N 189 GLU OXT HXT sing N N 190 GLY N CA sing N N 191 GLY N H sing N N 192 GLY N H2 sing N N 193 GLY CA C sing N N 194 GLY CA HA2 sing N N 195 GLY CA HA3 sing N N 196 GLY C O doub N N 197 GLY C OXT sing N N 198 GLY OXT HXT sing N N 199 HIS N CA sing N N 200 HIS N H sing N N 201 HIS N H2 sing N N 202 HIS CA C sing N N 203 HIS CA CB sing N N 204 HIS CA HA sing N N 205 HIS C O doub N N 206 HIS C OXT sing N N 207 HIS CB CG sing N N 208 HIS CB HB2 sing N N 209 HIS CB HB3 sing N N 210 HIS CG ND1 sing Y N 211 HIS CG CD2 doub Y N 212 HIS ND1 CE1 doub Y N 213 HIS ND1 HD1 sing N N 214 HIS CD2 NE2 sing Y N 215 HIS CD2 HD2 sing N N 216 HIS CE1 NE2 sing Y N 217 HIS CE1 HE1 sing N N 218 HIS NE2 HE2 sing N N 219 HIS OXT HXT sing N N 220 HOH O H1 sing N N 221 HOH O H2 sing N N 222 ILE N CA sing N N 223 ILE N H sing N N 224 ILE N H2 sing N N 225 ILE CA C sing N N 226 ILE CA CB sing N N 227 ILE CA HA sing N N 228 ILE C O doub N N 229 ILE C OXT sing N N 230 ILE CB CG1 sing N N 231 ILE CB CG2 sing N N 232 ILE CB HB sing N N 233 ILE CG1 CD1 sing N N 234 ILE CG1 HG12 sing N N 235 ILE CG1 HG13 sing N N 236 ILE CG2 HG21 sing N N 237 ILE CG2 HG22 sing N N 238 ILE CG2 HG23 sing N N 239 ILE CD1 HD11 sing N N 240 ILE CD1 HD12 sing N N 241 ILE CD1 HD13 sing N N 242 ILE OXT HXT sing N N 243 LEU N CA sing N N 244 LEU N H sing N N 245 LEU N H2 sing N N 246 LEU CA C sing N N 247 LEU CA CB sing N N 248 LEU CA HA sing N N 249 LEU C O doub N N 250 LEU C OXT sing N N 251 LEU CB CG sing N N 252 LEU CB HB2 sing N N 253 LEU CB HB3 sing N N 254 LEU CG CD1 sing N N 255 LEU CG CD2 sing N N 256 LEU CG HG sing N N 257 LEU CD1 HD11 sing N N 258 LEU CD1 HD12 sing N N 259 LEU CD1 HD13 sing N N 260 LEU CD2 HD21 sing N N 261 LEU CD2 HD22 sing N N 262 LEU CD2 HD23 sing N N 263 LEU OXT HXT sing N N 264 LYS N CA sing N N 265 LYS N H sing N N 266 LYS N H2 sing N N 267 LYS CA C sing N N 268 LYS CA CB sing N N 269 LYS CA HA sing N N 270 LYS C O doub N N 271 LYS C OXT sing N N 272 LYS CB CG sing N N 273 LYS CB HB2 sing N N 274 LYS CB HB3 sing N N 275 LYS CG CD sing N N 276 LYS CG HG2 sing N N 277 LYS CG HG3 sing N N 278 LYS CD CE sing N N 279 LYS CD HD2 sing N N 280 LYS CD HD3 sing N N 281 LYS CE NZ sing N N 282 LYS CE HE2 sing N N 283 LYS CE HE3 sing N N 284 LYS NZ HZ1 sing N N 285 LYS NZ HZ2 sing N N 286 LYS NZ HZ3 sing N N 287 LYS OXT HXT sing N N 288 MET N CA sing N N 289 MET N H sing N N 290 MET N H2 sing N N 291 MET CA C sing N N 292 MET CA CB sing N N 293 MET CA HA sing N N 294 MET C O doub N N 295 MET C OXT sing N N 296 MET CB CG sing N N 297 MET CB HB2 sing N N 298 MET CB HB3 sing N N 299 MET CG SD sing N N 300 MET CG HG2 sing N N 301 MET CG HG3 sing N N 302 MET SD CE sing N N 303 MET CE HE1 sing N N 304 MET CE HE2 sing N N 305 MET CE HE3 sing N N 306 MET OXT HXT sing N N 307 PHE N CA sing N N 308 PHE N H sing N N 309 PHE N H2 sing N N 310 PHE CA C sing N N 311 PHE CA CB sing N N 312 PHE CA HA sing N N 313 PHE C O doub N N 314 PHE C OXT sing N N 315 PHE CB CG sing N N 316 PHE CB HB2 sing N N 317 PHE CB HB3 sing N N 318 PHE CG CD1 doub Y N 319 PHE CG CD2 sing Y N 320 PHE CD1 CE1 sing Y N 321 PHE CD1 HD1 sing N N 322 PHE CD2 CE2 doub Y N 323 PHE CD2 HD2 sing N N 324 PHE CE1 CZ doub Y N 325 PHE CE1 HE1 sing N N 326 PHE CE2 CZ sing Y N 327 PHE CE2 HE2 sing N N 328 PHE CZ HZ sing N N 329 PHE OXT HXT sing N N 330 PRO N CA sing N N 331 PRO N CD sing N N 332 PRO N H sing N N 333 PRO CA C sing N N 334 PRO CA CB sing N N 335 PRO CA HA sing N N 336 PRO C O doub N N 337 PRO C OXT sing N N 338 PRO CB CG sing N N 339 PRO CB HB2 sing N N 340 PRO CB HB3 sing N N 341 PRO CG CD sing N N 342 PRO CG HG2 sing N N 343 PRO CG HG3 sing N N 344 PRO CD HD2 sing N N 345 PRO CD HD3 sing N N 346 PRO OXT HXT sing N N 347 SER N CA sing N N 348 SER N H sing N N 349 SER N H2 sing N N 350 SER CA C sing N N 351 SER CA CB sing N N 352 SER CA HA sing N N 353 SER C O doub N N 354 SER C OXT sing N N 355 SER CB OG sing N N 356 SER CB HB2 sing N N 357 SER CB HB3 sing N N 358 SER OG HG sing N N 359 SER OXT HXT sing N N 360 THR N CA sing N N 361 THR N H sing N N 362 THR N H2 sing N N 363 THR CA C sing N N 364 THR CA CB sing N N 365 THR CA HA sing N N 366 THR C O doub N N 367 THR C OXT sing N N 368 THR CB OG1 sing N N 369 THR CB CG2 sing N N 370 THR CB HB sing N N 371 THR OG1 HG1 sing N N 372 THR CG2 HG21 sing N N 373 THR CG2 HG22 sing N N 374 THR CG2 HG23 sing N N 375 THR OXT HXT sing N N 376 TRP N CA sing N N 377 TRP N H sing N N 378 TRP N H2 sing N N 379 TRP CA C sing N N 380 TRP CA CB sing N N 381 TRP CA HA sing N N 382 TRP C O doub N N 383 TRP C OXT sing N N 384 TRP CB CG sing N N 385 TRP CB HB2 sing N N 386 TRP CB HB3 sing N N 387 TRP CG CD1 doub Y N 388 TRP CG CD2 sing Y N 389 TRP CD1 NE1 sing Y N 390 TRP CD1 HD1 sing N N 391 TRP CD2 CE2 doub Y N 392 TRP CD2 CE3 sing Y N 393 TRP NE1 CE2 sing Y N 394 TRP NE1 HE1 sing N N 395 TRP CE2 CZ2 sing Y N 396 TRP CE3 CZ3 doub Y N 397 TRP CE3 HE3 sing N N 398 TRP CZ2 CH2 doub Y N 399 TRP CZ2 HZ2 sing N N 400 TRP CZ3 CH2 sing Y N 401 TRP CZ3 HZ3 sing N N 402 TRP CH2 HH2 sing N N 403 TRP OXT HXT sing N N 404 TYR N CA sing N N 405 TYR N H sing N N 406 TYR N H2 sing N N 407 TYR CA C sing N N 408 TYR CA CB sing N N 409 TYR CA HA sing N N 410 TYR C O doub N N 411 TYR C OXT sing N N 412 TYR CB CG sing N N 413 TYR CB HB2 sing N N 414 TYR CB HB3 sing N N 415 TYR CG CD1 doub Y N 416 TYR CG CD2 sing Y N 417 TYR CD1 CE1 sing Y N 418 TYR CD1 HD1 sing N N 419 TYR CD2 CE2 doub Y N 420 TYR CD2 HD2 sing N N 421 TYR CE1 CZ doub Y N 422 TYR CE1 HE1 sing N N 423 TYR CE2 CZ sing Y N 424 TYR CE2 HE2 sing N N 425 TYR CZ OH sing N N 426 TYR OH HH sing N N 427 TYR OXT HXT sing N N 428 VAL N CA sing N N 429 VAL N H sing N N 430 VAL N H2 sing N N 431 VAL CA C sing N N 432 VAL CA CB sing N N 433 VAL CA HA sing N N 434 VAL C O doub N N 435 VAL C OXT sing N N 436 VAL CB CG1 sing N N 437 VAL CB CG2 sing N N 438 VAL CB HB sing N N 439 VAL CG1 HG11 sing N N 440 VAL CG1 HG12 sing N N 441 VAL CG1 HG13 sing N N 442 VAL CG2 HG21 sing N N 443 VAL CG2 HG22 sing N N 444 VAL CG2 HG23 sing N N 445 VAL OXT HXT sing N N 446 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BGC 1 B BGC 1 B XXX 300 n B 2 GAL 2 B GAL 2 B XXX 300 n B 2 FUC 3 B FUC 3 B XXX 300 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 LFucpa1-2DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3/a4-b1_b2-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ? 2 2 3 FUC C1 O1 2 GAL O2 HO2 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 GAL 2 n 2 FUC 3 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3E6J _pdbx_initial_refinement_model.details 'PDB entry 3E6J' #