HEADER SIGNALING PROTEIN 15-JAN-17 5UIW TITLE CRYSTAL STRUCTURE OF CC CHEMOKINE RECEPTOR 5 (CCR5) IN COMPLEX WITH TITLE 2 HIGH POTENCY HIV ENTRY INHIBITOR 5P7-CCL5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-C CHEMOKINE RECEPTOR TYPE 5,RUBREDOXIN CHIMERA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CCR5,CHEMR13,HIV-1 FUSION CORECEPTOR,RD,CCR5,CHEMR13,HIV-1 COMPND 5 FUSION CORECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RUBREDOXIN FUSION SEQUENCE P00268; IN BETWEEN CCR5 COMPND 9 RESIDUE 223 AND 227 COMPND 10 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: C-C MOTIF CHEMOKINE 5; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: EOCP,EOSINOPHIL CHEMOTACTIC CYTOKINE,SIS-DELTA,SMALL- COMPND 15 INDUCIBLE CYTOKINE A5,T CELL-SPECIFIC PROTEIN P228,TCP228,T-CELL- COMPND 16 SPECIFIC PROTEIN RANTES; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: SEQUENCE BEFORE CC MOTIF "QGPPLMALQS" (WHERE THE FIRST COMPND 19 RESIDUE Q IS PCA AS GLUTAMINE IS CYCLIZED INTO PYROGLUTAMIC ACID COMPND 20 RESIDUE) IS ARTIFICIAL TO REPLACE NATIVE SEQUENCE "SPYSSDTTP". AS THE COMPND 21 REGISTER 0 FOR PCA, ALL THE REST OF RESIDUE NUMBERS ARE CONSISTENT COMPND 22 FOR CHEMOKINE RESIDUES. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 1501; SOURCE 5 GENE: CCR5, CMKBR5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1711; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-1; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: CCL5, D17S136E, SCYA5; SOURCE 18 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 21 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-1711; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-1 KEYWDS G-PROTEIN COUPLED RECEPTOR, CHEMOKINE RECEPTOR, HIV ENTRY INHIBITOR, KEYWDS 2 HIV-1 R5 ISOLATES CO-RECEPTOR, RECEPTOR-LIGAND COMPLEX, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHENG,L.QIN,G.W.HAN,M.GUSTAVSSON,T.KAWAMURA,R.C.STEVENS,V.CHEREZOV, AUTHOR 2 I.KUFAREVA,T.M.HANDEL REVDAT 5 04-OCT-23 5UIW 1 REMARK REVDAT 4 11-DEC-19 5UIW 1 SEQRES REVDAT 3 18-APR-18 5UIW 1 JRNL REVDAT 2 13-SEP-17 5UIW 1 REMARK REVDAT 1 28-JUN-17 5UIW 0 JRNL AUTH Y.ZHENG,G.W.HAN,R.ABAGYAN,B.WU,R.C.STEVENS,V.CHEREZOV, JRNL AUTH 2 I.KUFAREVA,T.M.HANDEL JRNL TITL STRUCTURE OF CC CHEMOKINE RECEPTOR 5 WITH A POTENT CHEMOKINE JRNL TITL 2 ANTAGONIST REVEALS MECHANISMS OF CHEMOKINE RECOGNITION AND JRNL TITL 3 MOLECULAR MIMICRY BY HIV. JRNL REF IMMUNITY V. 46 1005 2017 JRNL REFN ISSN 1097-4180 JRNL PMID 28636951 JRNL DOI 10.1016/J.IMMUNI.2017.05.002 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.4 REMARK 3 NUMBER OF REFLECTIONS : 23465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4746 - 4.5786 1.00 3602 217 0.1929 0.2022 REMARK 3 2 4.5786 - 3.6363 1.00 3435 177 0.1859 0.2473 REMARK 3 3 3.6363 - 3.1773 1.00 3362 168 0.2164 0.2487 REMARK 3 4 3.1773 - 2.8870 0.99 3349 175 0.2521 0.2838 REMARK 3 5 2.8870 - 2.6803 0.87 2945 133 0.2485 0.3031 REMARK 3 6 2.6803 - 2.5223 0.71 2315 127 0.2569 0.2937 REMARK 3 7 2.5223 - 2.3961 0.54 1772 108 0.2540 0.2765 REMARK 3 8 2.3961 - 2.2918 0.35 1165 65 0.2687 0.3529 REMARK 3 9 2.2918 - 2.2036 0.10 324 26 0.2707 0.3290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3491 REMARK 3 ANGLE : 0.969 4722 REMARK 3 CHIRALITY : 0.035 539 REMARK 3 PLANARITY : 0.005 582 REMARK 3 DIHEDRAL : 15.102 1218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A):-132.3783 -94.8877 611.2836 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.5747 REMARK 3 T33: 0.1637 T12: -0.0413 REMARK 3 T13: 0.0045 T23: 0.0814 REMARK 3 L TENSOR REMARK 3 L11: 1.8342 L22: 1.6547 REMARK 3 L33: 3.0254 L12: -0.0167 REMARK 3 L13: -1.2391 L23: 1.9151 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.6294 S13: 0.3912 REMARK 3 S21: -0.4836 S22: 0.0168 S23: -0.0362 REMARK 3 S31: -0.5779 S32: -0.0707 S33: -0.2481 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A):-133.5119 -97.4485 642.3796 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.2860 REMARK 3 T33: 0.1217 T12: 0.0486 REMARK 3 T13: 0.0267 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 1.1851 L22: 1.0823 REMARK 3 L33: 1.5743 L12: -0.1183 REMARK 3 L13: -0.1359 L23: 0.5161 REMARK 3 S TENSOR REMARK 3 S11: -0.2134 S12: 0.0107 S13: 0.0044 REMARK 3 S21: 0.3315 S22: 0.0373 S23: 0.0766 REMARK 3 S31: 0.1471 S32: 0.0040 S33: -0.0889 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1001 THROUGH 1054 ) REMARK 3 ORIGIN FOR THE GROUP (A):-140.0878-122.1137 683.0264 REMARK 3 T TENSOR REMARK 3 T11: 0.9807 T22: 0.3849 REMARK 3 T33: 0.3185 T12: -0.0308 REMARK 3 T13: 0.1317 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 0.9235 L22: 2.6023 REMARK 3 L33: 3.2562 L12: 0.9010 REMARK 3 L13: -0.6138 L23: -2.7813 REMARK 3 S TENSOR REMARK 3 S11: -0.1827 S12: 0.2252 S13: -0.3645 REMARK 3 S21: -1.1064 S22: -0.1435 S23: -0.4323 REMARK 3 S31: 1.2492 S32: 0.1416 S33: 0.2980 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A):-141.3603-104.9308 644.9275 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.2310 REMARK 3 T33: 0.1808 T12: -0.0512 REMARK 3 T13: 0.1137 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.1561 L22: 1.4603 REMARK 3 L33: 1.6640 L12: 0.0454 REMARK 3 L13: 0.2461 L23: -0.5368 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: -0.1311 S13: -0.0179 REMARK 3 S21: 0.4265 S22: 0.0629 S23: 0.2439 REMARK 3 S31: 0.4221 S32: -0.3262 S33: 0.1196 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1000225727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 29.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 2.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% (V/V) PEG 400, 120 MM LITHIUM REMARK 280 CITRATE, 1.2% (W/V) 1,5-DIAMINOPENTANE DIHYDROCHLORIDE, 100 MM 2- REMARK 280 (N-MORPHOLINO)ETHANESULFONIC ACID, PH 6.3, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 295.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 151.33500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.32000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 151.33500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 PRO A 1 REMARK 465 ASP A 2 REMARK 465 TYR A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 ILE A 9 REMARK 465 TYR A 10 REMARK 465 ASP A 11 REMARK 465 ILE A 12 REMARK 465 ASN A 13 REMARK 465 TYR A 14 REMARK 465 TYR A 15 REMARK 465 PHE A 317 REMARK 465 CYS A 318 REMARK 465 LYS A 319 REMARK 465 CYS A 320 REMARK 465 CYS A 321 REMARK 465 SER A 322 REMARK 465 ILE A 323 REMARK 465 PHE A 324 REMARK 465 GLN A 325 REMARK 465 GLN A 326 REMARK 465 GLU A 327 REMARK 465 ALA A 328 REMARK 465 PRO A 329 REMARK 465 GLU A 330 REMARK 465 ARG A 331 REMARK 465 ALA A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 VAL A 335 REMARK 465 TYR A 336 REMARK 465 THR A 337 REMARK 465 ARG A 338 REMARK 465 SER A 339 REMARK 465 THR A 340 REMARK 465 GLY A 341 REMARK 465 GLU A 342 REMARK 465 GLN A 343 REMARK 465 GLU A 344 REMARK 465 ILE A 345 REMARK 465 SER A 346 REMARK 465 VAL A 347 REMARK 465 GLY A 348 REMARK 465 LEU A 349 REMARK 465 GLY A 350 REMARK 465 ARG A 351 REMARK 465 PRO A 352 REMARK 465 LEU A 353 REMARK 465 GLU A 354 REMARK 465 VAL A 355 REMARK 465 LEU A 356 REMARK 465 PHE A 357 REMARK 465 GLN A 358 REMARK 465 SER B 68 REMARK 465 LEU B 69 REMARK 465 GLU B 70 REMARK 465 VAL B 71 REMARK 465 LEU B 72 REMARK 465 PHE B 73 REMARK 465 GLN B 74 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CE NZ REMARK 470 ILE A 23 CD1 REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 VAL A 134 CG1 CG2 REMARK 470 LEU A 137 CG CD1 CD2 REMARK 470 LYS A 138 CD CE NZ REMARK 470 LEU A 174 CG CD1 CD2 REMARK 470 HIS A 175 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 223 CD NE CZ NH1 NH2 REMARK 470 MET A1001 CG SD CE REMARK 470 LYS A1002 CG CD CE NZ REMARK 470 GLU A1016 CG CD OE1 OE2 REMARK 470 THR A1028 OG1 CG2 REMARK 470 ASP A1029 CG OD1 OD2 REMARK 470 LYS A1031 CG CD CE NZ REMARK 470 ASP A1032 CG OD1 OD2 REMARK 470 LYS A1046 NZ REMARK 470 ASP A1047 CG OD1 OD2 REMARK 470 GLN A1048 CG CD OE1 NE2 REMARK 470 GLU A1050 CD OE1 OE2 REMARK 470 GLU A1053 CG CD OE1 OE2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 HIS A 231 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 233 CG OD1 OD2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 VAL A 310 CG1 CG2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 HIS A 315 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 316 CG1 CG2 CD1 REMARK 470 ARG B 17 CZ NH1 NH2 REMARK 470 HIS B 23 ND1 CD2 CE1 NE2 REMARK 470 ARG B 44 CZ NH1 NH2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 MET B 67 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 61 81.71 62.19 REMARK 500 ALA A 92 -95.49 -135.56 REMARK 500 HIS A 132 67.40 -114.25 REMARK 500 LEU A 203 -58.27 -136.71 REMARK 500 ASP A1019 92.03 -166.79 REMARK 500 CYS A 290 5.77 -69.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1102 REMARK 610 OLC A 1103 REMARK 610 OLC A 1104 REMARK 610 OLC A 1105 REMARK 610 OLC A 1106 REMARK 610 OLC A 1107 REMARK 610 OLA A 1108 REMARK 610 OLA A 1109 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1006 SG REMARK 620 2 CYS A1009 SG 114.7 REMARK 620 3 CYS A1039 SG 108.4 97.2 REMARK 620 4 CYS A1042 SG 99.9 127.9 107.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1109 DBREF 5UIW A 2 223 UNP P51681 CCR5_HUMAN 2 223 DBREF 5UIW A 1001 1054 UNP P00268 RUBR_CLOPA 1 54 DBREF 5UIW A 227 349 UNP P51681 CCR5_HUMAN 227 352 DBREF 5UIW B 10 68 UNP P13501 CCL5_HUMAN 33 91 SEQADV 5UIW GLY A -1 UNP P51681 EXPRESSION TAG SEQADV 5UIW ALA A 0 UNP P51681 EXPRESSION TAG SEQADV 5UIW PRO A 1 UNP P51681 EXPRESSION TAG SEQADV 5UIW TYR A 58 UNP P51681 CYS 58 ENGINEERED MUTATION SEQADV 5UIW ASN A 163 UNP P51681 GLY 163 ENGINEERED MUTATION SEQADV 5UIW ASP A 233 UNP P51681 ALA 233 ENGINEERED MUTATION SEQADV 5UIW GLU A 303 UNP P51681 LYS 303 ENGINEERED MUTATION SEQADV 5UIW A UNP P51681 ALA 317 DELETION SEQADV 5UIW A UNP P51681 LYS 318 DELETION SEQADV 5UIW A UNP P51681 ARG 319 DELETION SEQADV 5UIW GLY A 350 UNP P51681 EXPRESSION TAG SEQADV 5UIW ARG A 351 UNP P51681 EXPRESSION TAG SEQADV 5UIW PRO A 352 UNP P51681 EXPRESSION TAG SEQADV 5UIW LEU A 353 UNP P51681 EXPRESSION TAG SEQADV 5UIW GLU A 354 UNP P51681 EXPRESSION TAG SEQADV 5UIW VAL A 355 UNP P51681 EXPRESSION TAG SEQADV 5UIW LEU A 356 UNP P51681 EXPRESSION TAG SEQADV 5UIW PHE A 357 UNP P51681 EXPRESSION TAG SEQADV 5UIW GLN A 358 UNP P51681 EXPRESSION TAG SEQADV 5UIW PCA B 0 UNP P13501 EXPRESSION TAG SEQADV 5UIW GLY B 1 UNP P13501 EXPRESSION TAG SEQADV 5UIW PRO B 2 UNP P13501 EXPRESSION TAG SEQADV 5UIW PRO B 3 UNP P13501 EXPRESSION TAG SEQADV 5UIW LEU B 4 UNP P13501 EXPRESSION TAG SEQADV 5UIW MET B 5 UNP P13501 EXPRESSION TAG SEQADV 5UIW ALA B 6 UNP P13501 EXPRESSION TAG SEQADV 5UIW LEU B 7 UNP P13501 EXPRESSION TAG SEQADV 5UIW GLN B 8 UNP P13501 EXPRESSION TAG SEQADV 5UIW SER B 9 UNP P13501 EXPRESSION TAG SEQADV 5UIW LEU B 69 UNP P13501 EXPRESSION TAG SEQADV 5UIW GLU B 70 UNP P13501 EXPRESSION TAG SEQADV 5UIW VAL B 71 UNP P13501 EXPRESSION TAG SEQADV 5UIW LEU B 72 UNP P13501 EXPRESSION TAG SEQADV 5UIW PHE B 73 UNP P13501 EXPRESSION TAG SEQADV 5UIW GLN B 74 UNP P13501 EXPRESSION TAG SEQRES 1 A 411 GLY ALA PRO ASP TYR GLN VAL SER SER PRO ILE TYR ASP SEQRES 2 A 411 ILE ASN TYR TYR THR SER GLU PRO CYS GLN LYS ILE ASN SEQRES 3 A 411 VAL LYS GLN ILE ALA ALA ARG LEU LEU PRO PRO LEU TYR SEQRES 4 A 411 SER LEU VAL PHE ILE PHE GLY PHE VAL GLY ASN MET LEU SEQRES 5 A 411 VAL ILE LEU ILE LEU ILE ASN TYR LYS ARG LEU LYS SER SEQRES 6 A 411 MET THR ASP ILE TYR LEU LEU ASN LEU ALA ILE SER ASP SEQRES 7 A 411 LEU PHE PHE LEU LEU THR VAL PRO PHE TRP ALA HIS TYR SEQRES 8 A 411 ALA ALA ALA GLN TRP ASP PHE GLY ASN THR MET CYS GLN SEQRES 9 A 411 LEU LEU THR GLY LEU TYR PHE ILE GLY PHE PHE SER GLY SEQRES 10 A 411 ILE PHE PHE ILE ILE LEU LEU THR ILE ASP ARG TYR LEU SEQRES 11 A 411 ALA VAL VAL HIS ALA VAL PHE ALA LEU LYS ALA ARG THR SEQRES 12 A 411 VAL THR PHE GLY VAL VAL THR SER VAL ILE THR TRP VAL SEQRES 13 A 411 VAL ALA VAL PHE ALA SER LEU PRO ASN ILE ILE PHE THR SEQRES 14 A 411 ARG SER GLN LYS GLU GLY LEU HIS TYR THR CYS SER SER SEQRES 15 A 411 HIS PHE PRO TYR SER GLN TYR GLN PHE TRP LYS ASN PHE SEQRES 16 A 411 GLN THR LEU LYS ILE VAL ILE LEU GLY LEU VAL LEU PRO SEQRES 17 A 411 LEU LEU VAL MET VAL ILE CYS TYR SER GLY ILE LEU LYS SEQRES 18 A 411 THR LEU LEU ARG MET LYS LYS TYR THR CYS THR VAL CYS SEQRES 19 A 411 GLY TYR ILE TYR ASN PRO GLU ASP GLY ASP PRO ASP ASN SEQRES 20 A 411 GLY VAL ASN PRO GLY THR ASP PHE LYS ASP ILE PRO ASP SEQRES 21 A 411 ASP TRP VAL CYS PRO LEU CYS GLY VAL GLY LYS ASP GLN SEQRES 22 A 411 PHE GLU GLU VAL GLU GLU GLU LYS LYS ARG HIS ARG ASP SEQRES 23 A 411 VAL ARG LEU ILE PHE THR ILE MET ILE VAL TYR PHE LEU SEQRES 24 A 411 PHE TRP ALA PRO TYR ASN ILE VAL LEU LEU LEU ASN THR SEQRES 25 A 411 PHE GLN GLU PHE PHE GLY LEU ASN ASN CYS SER SER SER SEQRES 26 A 411 ASN ARG LEU ASP GLN ALA MET GLN VAL THR GLU THR LEU SEQRES 27 A 411 GLY MET THR HIS CYS CYS ILE ASN PRO ILE ILE TYR ALA SEQRES 28 A 411 PHE VAL GLY GLU GLU PHE ARG ASN TYR LEU LEU VAL PHE SEQRES 29 A 411 PHE GLN LYS HIS ILE PHE CYS LYS CYS CYS SER ILE PHE SEQRES 30 A 411 GLN GLN GLU ALA PRO GLU ARG ALA SER SER VAL TYR THR SEQRES 31 A 411 ARG SER THR GLY GLU GLN GLU ILE SER VAL GLY LEU GLY SEQRES 32 A 411 ARG PRO LEU GLU VAL LEU PHE GLN SEQRES 1 B 75 PCA GLY PRO PRO LEU MET ALA LEU GLN SER CYS CYS PHE SEQRES 2 B 75 ALA TYR ILE ALA ARG PRO LEU PRO ARG ALA HIS ILE LYS SEQRES 3 B 75 GLU TYR PHE TYR THR SER GLY LYS CYS SER ASN PRO ALA SEQRES 4 B 75 VAL VAL PHE VAL THR ARG LYS ASN ARG GLN VAL CYS ALA SEQRES 5 B 75 ASN PRO GLU LYS LYS TRP VAL ARG GLU TYR ILE ASN SER SEQRES 6 B 75 LEU GLU MET SER LEU GLU VAL LEU PHE GLN HET PCA B 0 8 HET ZN A1101 1 HET OLC A1102 16 HET OLC A1103 13 HET OLC A1104 21 HET OLC A1105 16 HET OLC A1106 13 HET OLC A1107 24 HET OLA A1108 12 HET OLA A1109 8 HETNAM PCA PYROGLUTAMIC ACID HETNAM ZN ZINC ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM OLA OLEIC ACID HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 PCA C5 H7 N O3 FORMUL 3 ZN ZN 2+ FORMUL 4 OLC 6(C21 H40 O4) FORMUL 10 OLA 2(C18 H34 O2) FORMUL 12 HOH *44(H2 O) HELIX 1 AA1 LYS A 22 TYR A 58 1 37 HELIX 2 AA2 SER A 63 ALA A 92 1 30 HELIX 3 AA3 PHE A 96 HIS A 132 1 37 HELIX 4 AA4 PHE A 135 ARG A 140 1 6 HELIX 5 AA5 THR A 141 PHE A 166 1 26 HELIX 6 AA6 PRO A 183 SER A 185 5 3 HELIX 7 AA7 GLN A 186 LEU A 203 1 18 HELIX 8 AA8 LEU A 203 LEU A 222 1 20 HELIX 9 AA9 ASP A 1019 GLY A 1023 5 5 HELIX 10 AB1 ASP A 1029 ILE A 1033 5 5 HELIX 11 AB2 GLY A 1045 ASP A 1047 5 3 HELIX 12 AB3 VAL A 1052 PHE A 260 1 37 HELIX 13 AB4 ASN A 268 HIS A 289 1 22 HELIX 14 AB5 CYS A 291 VAL A 300 1 10 HELIX 15 AB6 GLY A 301 LYS A 314 1 14 HELIX 16 AB7 LEU B 4 GLN B 8 5 5 HELIX 17 AB8 PRO B 20 ALA B 22 5 3 HELIX 18 AB9 LYS B 55 MET B 67 1 13 SHEET 1 AA1 2 THR A 167 GLU A 172 0 SHEET 2 AA1 2 HIS A 175 SER A 180 -1 O HIS A 175 N GLU A 172 SHEET 1 AA2 3 ILE A1012 TYR A1013 0 SHEET 2 AA2 3 TYR A1004 CYS A1006 -1 N TYR A1004 O TYR A1013 SHEET 3 AA2 3 PHE A1049 GLU A1051 -1 O GLU A1050 N THR A1005 SHEET 1 AA3 3 ILE B 24 TYR B 29 0 SHEET 2 AA3 3 VAL B 39 THR B 43 -1 O VAL B 40 N PHE B 28 SHEET 3 AA3 3 GLN B 48 ALA B 51 -1 O ALA B 51 N VAL B 39 SSBOND 1 CYS A 20 CYS A 269 1555 1555 2.04 SSBOND 2 CYS A 101 CYS A 178 1555 1555 2.06 SSBOND 3 CYS B 10 CYS B 34 1555 1555 2.04 SSBOND 4 CYS B 11 CYS B 50 1555 1555 2.05 LINK C PCA B 0 N GLY B 1 1555 1555 1.33 LINK SG CYS A1006 ZN ZN A1101 1555 1555 2.45 LINK SG CYS A1009 ZN ZN A1101 1555 1555 2.18 LINK SG CYS A1039 ZN ZN A1101 1555 1555 2.29 LINK SG CYS A1042 ZN ZN A1101 1555 1555 2.29 SITE 1 AC1 4 CYS A1006 CYS A1009 CYS A1039 CYS A1042 SITE 1 AC2 6 PHE A 189 ASN A 192 PHE A 193 LEU A 196 SITE 2 AC2 6 OLC A1107 HOH A1230 SITE 1 AC3 1 PHE A 85 SITE 1 AC4 3 ALA A 249 LEU A 266 ARG A 274 SITE 1 AC5 2 GLN A 277 ALA A 278 SITE 1 AC6 2 SER A 38 HIS A 88 SITE 1 AC7 6 ASN A 24 ILE A 28 LEU A 32 PHE A 189 SITE 2 AC7 6 GLN A 277 OLC A1102 SITE 1 AC8 2 ARG A 235 OLA A1109 SITE 1 AC9 2 ILE A 242 OLA A1108 CRYST1 38.010 52.640 302.670 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003304 0.00000