HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-MAR-17 5V4D TITLE CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION OF THE CONSERVED TITLE 2 RID PROTEIN FAMILY YYFA FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSLATIONAL INHIBITOR PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: TDCF3, Y3551, YP_2944, YPO0627; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS ALPHA-BETA FOLD, ENAMINE/IMINE DEMAINASE (RID), STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,G.CHHOR,M.ENDRES,A.KRISHNAN,G.BABNIGG,O.SCHNEEWIND, AUTHOR 2 W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 4 04-OCT-23 5V4D 1 LINK REVDAT 3 24-JAN-18 5V4D 1 AUTHOR JRNL REVDAT 2 20-SEP-17 5V4D 1 REMARK REVDAT 1 05-APR-17 5V4D 0 JRNL AUTH Y.KIM,G.CHHOR,M.ENDRES,A.KRISHNAN,G.BABNIGG,O.SCHNEEWIND, JRNL AUTH 2 W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION OF THE JRNL TITL 2 CONSERVED RID PROTEIN FAMILY YYFA FROM YERSINIA PESTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2411) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 99374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9727 - 4.9699 0.99 3524 167 0.1645 0.1870 REMARK 3 2 4.9699 - 3.9457 0.98 3315 183 0.1296 0.1126 REMARK 3 3 3.9457 - 3.4472 1.00 3346 178 0.1458 0.1510 REMARK 3 4 3.4472 - 3.1322 0.99 3302 185 0.1553 0.1883 REMARK 3 5 3.1322 - 2.9077 0.97 3208 170 0.1578 0.1813 REMARK 3 6 2.9077 - 2.7363 0.99 3266 183 0.1612 0.1862 REMARK 3 7 2.7363 - 2.5993 0.99 3227 186 0.1589 0.1906 REMARK 3 8 2.5993 - 2.4862 0.99 3273 167 0.1526 0.1797 REMARK 3 9 2.4862 - 2.3905 0.99 3249 164 0.1527 0.2175 REMARK 3 10 2.3905 - 2.3080 0.99 3245 160 0.1497 0.1828 REMARK 3 11 2.3080 - 2.2358 0.95 3125 171 0.1459 0.1726 REMARK 3 12 2.2358 - 2.1719 0.99 3242 161 0.1412 0.1897 REMARK 3 13 2.1719 - 2.1148 0.99 3185 182 0.1457 0.1832 REMARK 3 14 2.1148 - 2.0632 0.98 3233 170 0.1446 0.1823 REMARK 3 15 2.0632 - 2.0163 0.98 3192 174 0.1372 0.1803 REMARK 3 16 2.0163 - 1.9733 0.98 3174 177 0.1509 0.1867 REMARK 3 17 1.9733 - 1.9339 0.98 3216 174 0.1546 0.1923 REMARK 3 18 1.9339 - 1.8974 0.96 3115 165 0.1525 0.1908 REMARK 3 19 1.8974 - 1.8635 0.96 3131 166 0.1513 0.2030 REMARK 3 20 1.8635 - 1.8319 0.98 3194 157 0.1537 0.2073 REMARK 3 21 1.8319 - 1.8024 0.97 3147 175 0.1505 0.1983 REMARK 3 22 1.8024 - 1.7746 0.98 3189 163 0.1588 0.2063 REMARK 3 23 1.7746 - 1.7485 0.97 3184 159 0.1591 0.2218 REMARK 3 24 1.7485 - 1.7239 0.97 3156 154 0.1609 0.2449 REMARK 3 25 1.7239 - 1.7006 0.97 3143 156 0.1778 0.2408 REMARK 3 26 1.7006 - 1.6785 0.96 3144 155 0.1791 0.2362 REMARK 3 27 1.6785 - 1.6575 0.96 3086 167 0.1939 0.2476 REMARK 3 28 1.6575 - 1.6376 0.88 2874 160 0.1971 0.2377 REMARK 3 29 1.6376 - 1.6185 0.80 2574 133 0.2127 0.2637 REMARK 3 30 1.6185 - 1.6003 0.66 2146 107 0.2292 0.2682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6124 REMARK 3 ANGLE : 1.208 8371 REMARK 3 CHIRALITY : 0.084 1015 REMARK 3 PLANARITY : 0.008 1108 REMARK 3 DIHEDRAL : 13.704 3746 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7647 -5.0791 -24.8228 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.1880 REMARK 3 T33: 0.1834 T12: -0.0047 REMARK 3 T13: -0.0193 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.2825 L22: 0.1793 REMARK 3 L33: 0.4805 L12: 0.0822 REMARK 3 L13: -0.1499 L23: 0.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.1820 S12: 0.0756 S13: 0.0035 REMARK 3 S21: -0.2069 S22: 0.1139 S23: 0.1311 REMARK 3 S31: 0.1848 S32: 0.2193 S33: 0.0027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6050 -5.2313 -15.8464 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.1642 REMARK 3 T33: 0.1546 T12: -0.0157 REMARK 3 T13: -0.0025 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6272 L22: 0.7048 REMARK 3 L33: 0.0284 L12: 0.0712 REMARK 3 L13: -0.1103 L23: 0.2659 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0942 S13: 0.0448 REMARK 3 S21: -0.0079 S22: 0.0119 S23: -0.0142 REMARK 3 S31: -0.0687 S32: 0.0369 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1083 -7.4994 -13.6507 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1537 REMARK 3 T33: 0.1616 T12: 0.0045 REMARK 3 T13: 0.0087 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.1895 L22: 0.4450 REMARK 3 L33: 0.0976 L12: 0.3576 REMARK 3 L13: 0.0632 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.0700 S13: 0.0187 REMARK 3 S21: -0.0179 S22: -0.0385 S23: 0.0068 REMARK 3 S31: -0.0315 S32: -0.0007 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0226 -17.1719 -43.0632 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.2211 REMARK 3 T33: 0.2372 T12: -0.0273 REMARK 3 T13: 0.0195 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.0542 L22: 0.0906 REMARK 3 L33: 0.1513 L12: 0.0491 REMARK 3 L13: 0.0505 L23: -0.0134 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: 0.2010 S13: -0.1625 REMARK 3 S21: -0.2156 S22: 0.0227 S23: 0.4488 REMARK 3 S31: 0.0633 S32: -0.2923 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7651 -19.3132 -37.1765 REMARK 3 T TENSOR REMARK 3 T11: 0.1610 T22: 0.1576 REMARK 3 T33: 0.1338 T12: -0.0047 REMARK 3 T13: 0.0095 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.4742 L22: 0.4350 REMARK 3 L33: 0.5066 L12: 0.4172 REMARK 3 L13: -0.0303 L23: -0.3212 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.0443 S13: -0.0445 REMARK 3 S21: -0.0844 S22: 0.0228 S23: -0.0024 REMARK 3 S31: 0.0256 S32: 0.0163 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2807 -18.9624 -29.7485 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.1688 REMARK 3 T33: 0.1600 T12: -0.0098 REMARK 3 T13: 0.0164 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.0803 L22: 0.1599 REMARK 3 L33: 0.1475 L12: 0.1640 REMARK 3 L13: -0.2977 L23: 0.0406 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0176 S13: -0.0153 REMARK 3 S21: -0.0785 S22: 0.0004 S23: -0.0130 REMARK 3 S31: -0.0517 S32: 0.0489 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4645 0.0303 -16.3793 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.2234 REMARK 3 T33: 0.2010 T12: 0.0077 REMARK 3 T13: -0.0049 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5532 L22: 0.1472 REMARK 3 L33: 0.2503 L12: 0.0281 REMARK 3 L13: 0.2778 L23: -0.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.5266 S13: 0.1030 REMARK 3 S21: 0.0042 S22: -0.0962 S23: -0.0013 REMARK 3 S31: -0.1709 S32: -0.1825 S33: -0.0250 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 20 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0726 -12.0082 -26.0916 REMARK 3 T TENSOR REMARK 3 T11: 0.1457 T22: 0.1913 REMARK 3 T33: 0.1773 T12: 0.0048 REMARK 3 T13: -0.0076 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.3818 L22: 0.2189 REMARK 3 L33: 0.5963 L12: -0.2307 REMARK 3 L13: 0.0282 L23: 0.0194 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0841 S13: 0.0101 REMARK 3 S21: -0.0377 S22: -0.0251 S23: 0.1317 REMARK 3 S31: -0.0182 S32: -0.0779 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 103 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0787 -15.0909 -23.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.1629 T22: 0.1640 REMARK 3 T33: 0.1484 T12: -0.0034 REMARK 3 T13: 0.0014 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.3875 L22: 0.0280 REMARK 3 L33: 0.2028 L12: -0.0516 REMARK 3 L13: 0.0516 L23: 0.0738 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0349 S13: 0.1037 REMARK 3 S21: -0.0251 S22: -0.0278 S23: 0.0383 REMARK 3 S31: 0.0040 S32: -0.0259 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 0 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8894 -48.2379 4.0637 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1667 REMARK 3 T33: 0.1836 T12: 0.0260 REMARK 3 T13: -0.0000 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.5257 L22: 0.1473 REMARK 3 L33: 0.6028 L12: -0.1220 REMARK 3 L13: -0.1742 L23: 0.2173 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: -0.1385 S13: 0.0128 REMARK 3 S21: 0.1656 S22: 0.0748 S23: 0.0564 REMARK 3 S31: 0.1578 S32: 0.1085 S33: -0.0002 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 35 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0595 -34.3893 -2.6458 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.2077 REMARK 3 T33: 0.1848 T12: -0.0145 REMARK 3 T13: -0.0359 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.0333 L22: 0.0818 REMARK 3 L33: 0.0778 L12: 0.0229 REMARK 3 L13: 0.0667 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.1593 S12: 0.0391 S13: 0.0381 REMARK 3 S21: -0.1163 S22: -0.0053 S23: -0.1225 REMARK 3 S31: -0.1379 S32: 0.1137 S33: -0.0017 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 47 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0401 -44.4061 -6.1347 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.2097 REMARK 3 T33: 0.1802 T12: 0.0375 REMARK 3 T13: -0.0047 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1787 L22: 0.0369 REMARK 3 L33: 0.0726 L12: 0.0124 REMARK 3 L13: 0.1526 L23: -0.0267 REMARK 3 S TENSOR REMARK 3 S11: 0.1287 S12: 0.0440 S13: 0.0268 REMARK 3 S21: -0.0362 S22: -0.2261 S23: -0.1417 REMARK 3 S31: 0.0905 S32: 0.4729 S33: -0.0004 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 65 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1948 -45.3669 -13.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1419 REMARK 3 T33: 0.1446 T12: 0.0149 REMARK 3 T13: 0.0101 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.2746 L22: 0.3350 REMARK 3 L33: 0.4476 L12: -0.1909 REMARK 3 L13: 0.1780 L23: 0.1468 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0828 S13: -0.0162 REMARK 3 S21: -0.0026 S22: -0.0021 S23: -0.0086 REMARK 3 S31: 0.0590 S32: 0.0917 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 118 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6121 -49.9987 -5.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.1283 REMARK 3 T33: 0.1811 T12: 0.0179 REMARK 3 T13: 0.0240 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.0644 L22: 0.0218 REMARK 3 L33: 0.0798 L12: 0.0377 REMARK 3 L13: 0.0364 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0753 S13: 0.0031 REMARK 3 S21: 0.2675 S22: 0.0262 S23: 0.2032 REMARK 3 S31: -0.0951 S32: 0.0955 S33: 0.0004 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3501 -51.5893 -2.5951 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.1797 REMARK 3 T33: 0.1852 T12: -0.0056 REMARK 3 T13: 0.0501 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.1517 L22: 0.1886 REMARK 3 L33: 0.3708 L12: 0.0250 REMARK 3 L13: -0.0443 L23: 0.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: 0.0610 S13: 0.0243 REMARK 3 S21: -0.1442 S22: -0.1424 S23: -0.0980 REMARK 3 S31: 0.0663 S32: -0.1903 S33: -0.0004 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 30 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1999 -37.9184 4.4739 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1511 REMARK 3 T33: 0.1578 T12: -0.0029 REMARK 3 T13: 0.0108 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.3453 L22: 0.1097 REMARK 3 L33: 0.4242 L12: -0.0314 REMARK 3 L13: -0.1022 L23: -0.0741 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0676 S13: 0.0549 REMARK 3 S21: -0.0132 S22: -0.0402 S23: 0.0346 REMARK 3 S31: 0.0327 S32: -0.0203 S33: -0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 97 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0537 -39.9412 -0.1818 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.1361 REMARK 3 T33: 0.1554 T12: 0.0059 REMARK 3 T13: -0.0053 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.3167 L22: 0.1640 REMARK 3 L33: 0.3517 L12: -0.0288 REMARK 3 L13: 0.0280 L23: 0.0711 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0392 S13: 0.0030 REMARK 3 S21: -0.0090 S22: -0.0355 S23: 0.0644 REMARK 3 S31: 0.0851 S32: 0.0211 S33: -0.0003 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9011 -57.3599 -22.2773 REMARK 3 T TENSOR REMARK 3 T11: 0.2426 T22: 0.2151 REMARK 3 T33: 0.1866 T12: -0.0065 REMARK 3 T13: -0.0068 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0369 L22: 0.0492 REMARK 3 L33: 0.1016 L12: 0.0605 REMARK 3 L13: 0.1012 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: 0.2862 S13: -0.1452 REMARK 3 S21: 0.1006 S22: 0.0148 S23: -0.1060 REMARK 3 S31: -0.0656 S32: 0.3581 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 20 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0147 -49.4814 -20.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.1686 T22: 0.1492 REMARK 3 T33: 0.1468 T12: -0.0219 REMARK 3 T13: 0.0002 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4872 L22: 0.6672 REMARK 3 L33: 0.6110 L12: 0.1233 REMARK 3 L13: -0.2131 L23: 0.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: 0.0742 S13: -0.0601 REMARK 3 S21: -0.0214 S22: -0.0558 S23: 0.0449 REMARK 3 S31: 0.1196 S32: -0.1016 S33: -0.0000 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 96 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2614 -53.7612 -13.6462 REMARK 3 T TENSOR REMARK 3 T11: 0.2537 T22: 0.2891 REMARK 3 T33: 0.2283 T12: -0.0867 REMARK 3 T13: -0.0151 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.0827 L22: 0.0511 REMARK 3 L33: 0.0429 L12: -0.0136 REMARK 3 L13: -0.0218 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.1578 S12: -0.2296 S13: -0.0980 REMARK 3 S21: -0.2032 S22: 0.0053 S23: 0.1041 REMARK 3 S31: -0.0174 S32: -0.4928 S33: 0.0071 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 103 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3198 -43.6909 -16.1082 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.1464 REMARK 3 T33: 0.1524 T12: -0.0061 REMARK 3 T13: 0.0134 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.2153 L22: 0.0926 REMARK 3 L33: 0.1213 L12: 0.1168 REMARK 3 L13: -0.0035 L23: 0.1173 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.0226 S13: -0.0212 REMARK 3 S21: 0.0426 S22: -0.0301 S23: 0.0434 REMARK 3 S31: 0.0357 S32: -0.0125 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5V4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000226857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 1XRG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M MES PH REMARK 280 6.0, 20 5(W/V) PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.96350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.96450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.45950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.96450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.96350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.45950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 SER B -1 REMARK 465 ASN B 0 REMARK 465 SER C -1 REMARK 465 ASN C 0 REMARK 465 SER D -1 REMARK 465 SER E -1 REMARK 465 SER F -1 REMARK 465 ASN F 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 302 O HOH E 357 1.91 REMARK 500 OD1 ASP D 94 O HOH D 301 2.09 REMARK 500 OG1 THR E 68 OD1 ASP E 70 2.15 REMARK 500 OD2 ASP F 59 OH TYR F 95 2.16 REMARK 500 O HOH E 388 O HOH E 415 2.16 REMARK 500 OG1 THR A 68 OD2 ASP A 70 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 114 18.61 59.49 REMARK 500 ILE C 14 -64.79 -91.10 REMARK 500 THR C 67 -168.45 -127.41 REMARK 500 PRO D 34 47.05 -78.15 REMARK 500 THR E 67 -169.51 -124.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 O REMARK 620 2 ASP A 90 OD1 78.6 REMARK 620 3 ASP A 94 OD1 74.8 153.1 REMARK 620 4 GOL A 203 O2 148.2 70.7 135.0 REMARK 620 5 GOL A 203 O1 143.9 133.8 71.2 63.8 REMARK 620 6 HOH A 314 O 81.5 86.4 86.6 88.7 84.9 REMARK 620 7 ASP D 38 OD2 56.6 64.9 97.1 101.6 116.3 31.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 310 O REMARK 620 2 HOH A 353 O 62.9 REMARK 620 3 HOH E 337 O 113.4 171.8 REMARK 620 4 HOH E 356 O 141.9 106.6 71.6 REMARK 620 5 HOH E 363 O 58.2 109.5 72.2 143.8 REMARK 620 6 HOH E 394 O 72.9 85.9 86.0 69.7 109.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 66 O REMARK 620 2 VAL B 126 O 88.5 REMARK 620 3 HOH B 345 O 76.3 89.4 REMARK 620 4 HOH B 396 O 82.7 171.1 86.9 REMARK 620 5 HOH B 403 O 145.3 95.9 69.4 90.4 REMARK 620 6 HOH D 328 O 145.9 91.3 137.8 96.9 68.5 REMARK 620 7 HOH D 332 O 69.8 94.9 145.7 83.7 143.3 76.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 108 OE1 REMARK 620 2 GLU B 108 OE2 52.0 REMARK 620 3 HOH B 326 O 82.6 84.4 REMARK 620 4 HOH B 360 O 131.8 79.7 92.5 REMARK 620 5 HOH B 394 O 78.3 129.9 96.5 149.7 REMARK 620 6 HOH B 408 O 100.2 98.7 176.7 87.0 82.3 REMARK 620 7 SER F 110 OG 147.4 144.6 74.6 73.1 81.5 102.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA F 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 110 OG REMARK 620 2 GLU F 108 OE1 147.9 REMARK 620 3 GLU F 108 OE2 143.1 51.7 REMARK 620 4 HOH F 327 O 73.5 82.6 85.0 REMARK 620 5 HOH F 341 O 73.7 129.2 77.5 92.0 REMARK 620 6 HOH F 395 O 82.9 77.9 129.3 94.7 152.8 REMARK 620 7 HOH F 401 O 104.5 98.8 97.4 177.7 88.5 83.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 38 OD2 REMARK 620 2 ASP E 90 O 81.6 REMARK 620 3 ASP E 90 OD1 78.4 3.5 REMARK 620 4 ASP E 94 OD2 83.5 2.8 5.1 REMARK 620 5 GOL E 204 O3 81.8 4.4 4.5 2.9 REMARK 620 6 GOL E 204 O2 79.0 4.8 2.7 4.9 2.8 REMARK 620 7 HOH E 317 O 81.3 3.6 3.5 2.7 1.0 2.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY F 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA F 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP64152 RELATED DB: TARGETTRACK DBREF 5V4D A 2 126 UNP Q7CGF7 Q7CGF7_YERPE 2 126 DBREF 5V4D B 2 126 UNP Q7CGF7 Q7CGF7_YERPE 2 126 DBREF 5V4D C 2 126 UNP Q7CGF7 Q7CGF7_YERPE 2 126 DBREF 5V4D D 2 126 UNP Q7CGF7 Q7CGF7_YERPE 2 126 DBREF 5V4D E 2 126 UNP Q7CGF7 Q7CGF7_YERPE 2 126 DBREF 5V4D F 2 126 UNP Q7CGF7 Q7CGF7_YERPE 2 126 SEQADV 5V4D SER A -1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ASN A 0 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ALA A 1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D SER B -1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ASN B 0 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ALA B 1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D SER C -1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ASN C 0 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ALA C 1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D SER D -1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ASN D 0 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ALA D 1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D SER E -1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ASN E 0 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ALA E 1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D SER F -1 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ASN F 0 UNP Q7CGF7 EXPRESSION TAG SEQADV 5V4D ALA F 1 UNP Q7CGF7 EXPRESSION TAG SEQRES 1 A 128 SER ASN ALA LYS SER VAL ILE GLU THR LYS ASN ALA PRO SEQRES 2 A 128 SER ALA ILE GLY PRO TYR SER GLN ALA ILE CYS PHE ASN SEQRES 3 A 128 GLY ILE LEU TYR ALA SER GLY GLN ILE PRO ILE ASN PRO SEQRES 4 A 128 ASP THR GLY ASP LEU VAL GLU ASN ASP ILE GLU LYS GLN SEQRES 5 A 128 THR ARG GLN VAL LEU LYS ASN ILE ASP ALA VAL LEU LEU SEQRES 6 A 128 GLN ALA GLY THR THR LYS ASP LYS ILE VAL LYS THR THR SEQRES 7 A 128 ILE PHE ILE THR ASN ILE ASN ASN SER SER GLN VAL ASN SEQRES 8 A 128 ASP ILE TYR ALA ASP TYR PHE LYS GLY THR ILE PHE PRO SEQRES 9 A 128 ALA ARG SER THR VAL GLU VAL SER ALA LEU PRO LYS GLY SEQRES 10 A 128 ALA LEU VAL GLU ILE GLU VAL ILE ALA GLY VAL SEQRES 1 B 128 SER ASN ALA LYS SER VAL ILE GLU THR LYS ASN ALA PRO SEQRES 2 B 128 SER ALA ILE GLY PRO TYR SER GLN ALA ILE CYS PHE ASN SEQRES 3 B 128 GLY ILE LEU TYR ALA SER GLY GLN ILE PRO ILE ASN PRO SEQRES 4 B 128 ASP THR GLY ASP LEU VAL GLU ASN ASP ILE GLU LYS GLN SEQRES 5 B 128 THR ARG GLN VAL LEU LYS ASN ILE ASP ALA VAL LEU LEU SEQRES 6 B 128 GLN ALA GLY THR THR LYS ASP LYS ILE VAL LYS THR THR SEQRES 7 B 128 ILE PHE ILE THR ASN ILE ASN ASN SER SER GLN VAL ASN SEQRES 8 B 128 ASP ILE TYR ALA ASP TYR PHE LYS GLY THR ILE PHE PRO SEQRES 9 B 128 ALA ARG SER THR VAL GLU VAL SER ALA LEU PRO LYS GLY SEQRES 10 B 128 ALA LEU VAL GLU ILE GLU VAL ILE ALA GLY VAL SEQRES 1 C 128 SER ASN ALA LYS SER VAL ILE GLU THR LYS ASN ALA PRO SEQRES 2 C 128 SER ALA ILE GLY PRO TYR SER GLN ALA ILE CYS PHE ASN SEQRES 3 C 128 GLY ILE LEU TYR ALA SER GLY GLN ILE PRO ILE ASN PRO SEQRES 4 C 128 ASP THR GLY ASP LEU VAL GLU ASN ASP ILE GLU LYS GLN SEQRES 5 C 128 THR ARG GLN VAL LEU LYS ASN ILE ASP ALA VAL LEU LEU SEQRES 6 C 128 GLN ALA GLY THR THR LYS ASP LYS ILE VAL LYS THR THR SEQRES 7 C 128 ILE PHE ILE THR ASN ILE ASN ASN SER SER GLN VAL ASN SEQRES 8 C 128 ASP ILE TYR ALA ASP TYR PHE LYS GLY THR ILE PHE PRO SEQRES 9 C 128 ALA ARG SER THR VAL GLU VAL SER ALA LEU PRO LYS GLY SEQRES 10 C 128 ALA LEU VAL GLU ILE GLU VAL ILE ALA GLY VAL SEQRES 1 D 128 SER ASN ALA LYS SER VAL ILE GLU THR LYS ASN ALA PRO SEQRES 2 D 128 SER ALA ILE GLY PRO TYR SER GLN ALA ILE CYS PHE ASN SEQRES 3 D 128 GLY ILE LEU TYR ALA SER GLY GLN ILE PRO ILE ASN PRO SEQRES 4 D 128 ASP THR GLY ASP LEU VAL GLU ASN ASP ILE GLU LYS GLN SEQRES 5 D 128 THR ARG GLN VAL LEU LYS ASN ILE ASP ALA VAL LEU LEU SEQRES 6 D 128 GLN ALA GLY THR THR LYS ASP LYS ILE VAL LYS THR THR SEQRES 7 D 128 ILE PHE ILE THR ASN ILE ASN ASN SER SER GLN VAL ASN SEQRES 8 D 128 ASP ILE TYR ALA ASP TYR PHE LYS GLY THR ILE PHE PRO SEQRES 9 D 128 ALA ARG SER THR VAL GLU VAL SER ALA LEU PRO LYS GLY SEQRES 10 D 128 ALA LEU VAL GLU ILE GLU VAL ILE ALA GLY VAL SEQRES 1 E 128 SER ASN ALA LYS SER VAL ILE GLU THR LYS ASN ALA PRO SEQRES 2 E 128 SER ALA ILE GLY PRO TYR SER GLN ALA ILE CYS PHE ASN SEQRES 3 E 128 GLY ILE LEU TYR ALA SER GLY GLN ILE PRO ILE ASN PRO SEQRES 4 E 128 ASP THR GLY ASP LEU VAL GLU ASN ASP ILE GLU LYS GLN SEQRES 5 E 128 THR ARG GLN VAL LEU LYS ASN ILE ASP ALA VAL LEU LEU SEQRES 6 E 128 GLN ALA GLY THR THR LYS ASP LYS ILE VAL LYS THR THR SEQRES 7 E 128 ILE PHE ILE THR ASN ILE ASN ASN SER SER GLN VAL ASN SEQRES 8 E 128 ASP ILE TYR ALA ASP TYR PHE LYS GLY THR ILE PHE PRO SEQRES 9 E 128 ALA ARG SER THR VAL GLU VAL SER ALA LEU PRO LYS GLY SEQRES 10 E 128 ALA LEU VAL GLU ILE GLU VAL ILE ALA GLY VAL SEQRES 1 F 128 SER ASN ALA LYS SER VAL ILE GLU THR LYS ASN ALA PRO SEQRES 2 F 128 SER ALA ILE GLY PRO TYR SER GLN ALA ILE CYS PHE ASN SEQRES 3 F 128 GLY ILE LEU TYR ALA SER GLY GLN ILE PRO ILE ASN PRO SEQRES 4 F 128 ASP THR GLY ASP LEU VAL GLU ASN ASP ILE GLU LYS GLN SEQRES 5 F 128 THR ARG GLN VAL LEU LYS ASN ILE ASP ALA VAL LEU LEU SEQRES 6 F 128 GLN ALA GLY THR THR LYS ASP LYS ILE VAL LYS THR THR SEQRES 7 F 128 ILE PHE ILE THR ASN ILE ASN ASN SER SER GLN VAL ASN SEQRES 8 F 128 ASP ILE TYR ALA ASP TYR PHE LYS GLY THR ILE PHE PRO SEQRES 9 F 128 ALA ARG SER THR VAL GLU VAL SER ALA LEU PRO LYS GLY SEQRES 10 F 128 ALA LEU VAL GLU ILE GLU VAL ILE ALA GLY VAL HET ACY A 201 4 HET CA A 202 1 HET GOL A 203 6 HET ACY B 201 4 HET CA B 202 1 HET CA B 203 1 HET ACY C 201 4 HET GOL C 202 6 HET ACY D 201 4 HET ACY D 202 4 HET ACY E 201 4 HET CA E 202 1 HET CA E 203 1 HET GOL E 204 6 HET ACY F 201 4 HET CA F 202 1 HETNAM ACY ACETIC ACID HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 ACY 7(C2 H4 O2) FORMUL 8 CA 6(CA 2+) FORMUL 9 GOL 3(C3 H8 O3) FORMUL 23 HOH *677(H2 O) HELIX 1 AA1 ASP A 46 ALA A 65 1 20 HELIX 2 AA2 THR A 68 ASP A 70 5 3 HELIX 3 AA3 ASN A 81 ASN A 83 5 3 HELIX 4 AA4 ASN A 84 LYS A 97 1 14 HELIX 5 AA5 LEU A 112 ALA A 116 5 5 HELIX 6 AA6 ASP B 46 ALA B 65 1 20 HELIX 7 AA7 THR B 68 ASP B 70 5 3 HELIX 8 AA8 ASN B 81 ASN B 83 5 3 HELIX 9 AA9 ASN B 84 LYS B 97 1 14 HELIX 10 AB1 LEU B 112 ALA B 116 5 5 HELIX 11 AB2 ASP C 46 ALA C 65 1 20 HELIX 12 AB3 THR C 68 ASP C 70 5 3 HELIX 13 AB4 ASN C 81 ASN C 83 5 3 HELIX 14 AB5 ASN C 84 LYS C 97 1 14 HELIX 15 AB6 LEU C 112 ALA C 116 5 5 HELIX 16 AB7 ASP D 46 ALA D 65 1 20 HELIX 17 AB8 THR D 68 ASP D 70 5 3 HELIX 18 AB9 ASN D 81 ASN D 83 5 3 HELIX 19 AC1 ASN D 84 LYS D 97 1 14 HELIX 20 AC2 LEU D 112 ALA D 116 5 5 HELIX 21 AC3 ASP E 46 ALA E 65 1 20 HELIX 22 AC4 THR E 68 ASP E 70 5 3 HELIX 23 AC5 ASN E 81 ASN E 83 5 3 HELIX 24 AC6 ASN E 84 LYS E 97 1 14 HELIX 25 AC7 LEU E 112 ALA E 116 5 5 HELIX 26 AC8 ASP F 46 ALA F 65 1 20 HELIX 27 AC9 THR F 68 ASP F 70 5 3 HELIX 28 AD1 ASN F 81 ASN F 83 5 3 HELIX 29 AD2 ASN F 84 PHE F 96 1 13 HELIX 30 AD3 LEU F 112 ALA F 116 5 5 SHEET 1 AA1 6 SER A 3 ILE A 5 0 SHEET 2 AA1 6 ALA A 20 PHE A 23 -1 O CYS A 22 N SER A 3 SHEET 3 AA1 6 ILE A 26 ALA A 29 -1 O TYR A 28 N ILE A 21 SHEET 4 AA1 6 VAL A 118 GLY A 125 -1 O ALA A 124 N LEU A 27 SHEET 5 AA1 6 ILE A 72 ILE A 79 -1 N VAL A 73 O ILE A 123 SHEET 6 AA1 6 ALA A 103 GLU A 108 1 O SER A 105 N ILE A 77 SHEET 1 AA2 6 SER B 3 ILE B 5 0 SHEET 2 AA2 6 ALA B 20 PHE B 23 -1 O CYS B 22 N SER B 3 SHEET 3 AA2 6 ILE B 26 ALA B 29 -1 O TYR B 28 N ILE B 21 SHEET 4 AA2 6 VAL B 118 GLY B 125 -1 O ALA B 124 N LEU B 27 SHEET 5 AA2 6 ILE B 72 ILE B 79 -1 N PHE B 78 O GLU B 119 SHEET 6 AA2 6 ALA B 103 GLU B 108 1 O SER B 105 N ILE B 77 SHEET 1 AA3 6 SER C 3 ILE C 5 0 SHEET 2 AA3 6 ALA C 20 PHE C 23 -1 O CYS C 22 N SER C 3 SHEET 3 AA3 6 ILE C 26 ALA C 29 -1 O TYR C 28 N ILE C 21 SHEET 4 AA3 6 VAL C 118 GLY C 125 -1 O ALA C 124 N LEU C 27 SHEET 5 AA3 6 ILE C 72 ILE C 79 -1 N VAL C 73 O ILE C 123 SHEET 6 AA3 6 ALA C 103 GLU C 108 1 O SER C 105 N ILE C 77 SHEET 1 AA4 6 SER D 3 ILE D 5 0 SHEET 2 AA4 6 ALA D 20 PHE D 23 -1 O CYS D 22 N SER D 3 SHEET 3 AA4 6 ILE D 26 ALA D 29 -1 O TYR D 28 N ILE D 21 SHEET 4 AA4 6 VAL D 118 GLY D 125 -1 O ALA D 124 N LEU D 27 SHEET 5 AA4 6 ILE D 72 ILE D 79 -1 N PHE D 78 O GLU D 119 SHEET 6 AA4 6 ALA D 103 GLU D 108 1 O SER D 105 N ILE D 77 SHEET 1 AA5 6 SER E 3 ILE E 5 0 SHEET 2 AA5 6 ALA E 20 PHE E 23 -1 O CYS E 22 N SER E 3 SHEET 3 AA5 6 ILE E 26 ALA E 29 -1 O TYR E 28 N ILE E 21 SHEET 4 AA5 6 VAL E 118 GLY E 125 -1 O ALA E 124 N LEU E 27 SHEET 5 AA5 6 ILE E 72 ILE E 79 -1 N PHE E 78 O GLU E 119 SHEET 6 AA5 6 ALA E 103 GLU E 108 1 O SER E 105 N ILE E 77 SHEET 1 AA6 6 SER F 3 ILE F 5 0 SHEET 2 AA6 6 ALA F 20 PHE F 23 -1 O CYS F 22 N SER F 3 SHEET 3 AA6 6 ILE F 26 ALA F 29 -1 O TYR F 28 N ILE F 21 SHEET 4 AA6 6 VAL F 118 GLY F 125 -1 O ALA F 124 N LEU F 27 SHEET 5 AA6 6 ILE F 72 ILE F 79 -1 N PHE F 78 O GLU F 119 SHEET 6 AA6 6 ALA F 103 GLU F 108 1 O SER F 105 N ILE F 77 LINK O ASP A 90 CA CA A 202 1555 1555 2.51 LINK OD1 ASP A 90 CA CA A 202 1555 1555 2.33 LINK OD1 ASP A 94 CA CA A 202 1555 1555 2.37 LINK CA CA A 202 O2 GOL A 203 1555 1555 2.37 LINK CA CA A 202 O1 GOL A 203 1555 1555 2.30 LINK CA CA A 202 O HOH A 314 1555 1555 2.39 LINK CA CA A 202 OD2 ASP D 38 4545 1555 2.32 LINK O HOH A 310 CA CA E 203 4445 1555 2.28 LINK O HOH A 353 CA CA E 203 4445 1555 2.68 LINK O GLY B 66 CA CA B 203 1555 1555 2.46 LINK OE1 GLU B 108 CA CA B 202 1555 1555 2.48 LINK OE2 GLU B 108 CA CA B 202 1555 1555 2.48 LINK OG SER B 110 CA CA F 202 1555 1555 2.45 LINK O VAL B 126 CA CA B 203 1555 1555 2.27 LINK CA CA B 202 O HOH B 326 1555 1555 2.33 LINK CA CA B 202 O HOH B 360 1555 1555 2.41 LINK CA CA B 202 O HOH B 394 1555 1555 2.43 LINK CA CA B 202 O HOH B 408 1555 1555 2.41 LINK CA CA B 202 OG SER F 110 1555 1555 2.44 LINK CA CA B 203 O HOH B 345 1555 1555 2.40 LINK CA CA B 203 O HOH B 396 1555 1555 2.25 LINK CA CA B 203 O HOH B 403 1555 1555 2.47 LINK CA CA B 203 O HOH D 328 1555 3654 2.44 LINK CA CA B 203 O HOH D 332 1555 3654 2.38 LINK OD2 ASP C 38 CA CA E 202 1555 4445 2.29 LINK O ASP E 90 CA CA E 202 1555 1555 2.49 LINK OD1 ASP E 90 CA CA E 202 1555 1555 2.41 LINK OD2 ASP E 94 CA CA E 202 1555 1555 2.35 LINK CA CA E 202 O3 GOL E 204 1555 1555 2.40 LINK CA CA E 202 O2 GOL E 204 1555 1555 2.48 LINK CA CA E 202 O HOH E 317 1555 1555 2.45 LINK CA CA E 203 O HOH E 337 1555 1555 2.64 LINK CA CA E 203 O HOH E 356 1555 1555 2.32 LINK CA CA E 203 O HOH E 363 1555 1555 2.39 LINK CA CA E 203 O HOH E 394 1555 1555 2.40 LINK OE1 GLU F 108 CA CA F 202 1555 1555 2.50 LINK OE2 GLU F 108 CA CA F 202 1555 1555 2.49 LINK CA CA F 202 O HOH F 327 1555 1555 2.35 LINK CA CA F 202 O HOH F 341 1555 1555 2.40 LINK CA CA F 202 O HOH F 395 1555 1555 2.45 LINK CA CA F 202 O HOH F 401 1555 1555 2.39 SITE 1 AC1 5 ARG A 104 SER A 105 THR A 106 TYR C 17 SITE 2 AC1 5 GLU C 119 SITE 1 AC2 5 ASP A 90 ASP A 94 GOL A 203 HOH A 314 SITE 2 AC2 5 ASP D 38 SITE 1 AC3 8 ASP A 90 ASP A 94 CA A 202 HOH A 309 SITE 2 AC3 8 HOH A 325 ASN D 36 ASP D 38 HOH D 379 SITE 1 AC4 5 TYR A 17 ARG B 104 THR B 106 HOH B 303 SITE 2 AC4 5 HOH B 386 SITE 1 AC5 6 GLU B 108 HOH B 326 HOH B 360 HOH B 394 SITE 2 AC5 6 HOH B 408 SER F 110 SITE 1 AC6 7 GLY B 66 VAL B 126 HOH B 345 HOH B 396 SITE 2 AC6 7 HOH B 403 HOH D 328 HOH D 332 SITE 1 AC7 4 GLU B 119 ARG C 104 SER C 105 THR C 106 SITE 1 AC8 7 ILE A 82 ASN A 83 HOH A 315 PRO C 113 SITE 2 AC8 7 LYS C 114 HOH C 305 HOH C 330 SITE 1 AC9 4 ARG D 104 SER D 105 THR D 106 GLU F 119 SITE 1 AD1 5 PRO D 113 LYS D 114 HOH D 313 ILE E 82 SITE 2 AD1 5 HOH E 341 SITE 1 AD2 5 TYR D 17 GLU D 119 ARG E 104 SER E 105 SITE 2 AD2 5 THR E 106 SITE 1 AD3 5 ASP C 38 ASP E 90 ASP E 94 GOL E 204 SITE 2 AD3 5 HOH E 317 SITE 1 AD4 6 HOH A 310 HOH A 353 HOH E 337 HOH E 356 SITE 2 AD4 6 HOH E 363 HOH E 394 SITE 1 AD5 8 ASN C 36 ASP C 38 ASP E 90 ASP E 94 SITE 2 AD5 8 CA E 202 HOH E 320 HOH E 323 HOH E 349 SITE 1 AD6 3 HOH E 307 ARG F 104 THR F 106 SITE 1 AD7 6 SER B 110 GLU F 108 HOH F 327 HOH F 341 SITE 2 AD7 6 HOH F 395 HOH F 401 CRYST1 67.927 80.919 141.929 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007046 0.00000