data_5V6F # _entry.id 5V6F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5V6F pdb_00005v6f 10.2210/pdb5v6f/pdb WWPDB D_1000226962 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5V6C unspecified PDB . 5V6K unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5V6F _pdbx_database_status.recvd_initial_deposition_date 2017-03-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'De, S.' 1 ? 'Kaus, K.' 2 ? 'Sinclair, S.' 3 ? 'Case, B.C.' 4 ? 'Olson, R.' 5 0000-0002-5432-206X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'PLoS Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first e1006841 _citation.page_last e1006841 _citation.title 'Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1006841 _citation.pdbx_database_id_PubMed 29432487 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'De, S.' 1 ? primary 'Kaus, K.' 2 ? primary 'Sinclair, S.' 3 ? primary 'Case, B.C.' 4 ? primary 'Olson, R.' 5 ? # _cell.length_a 31.882 _cell.length_b 38.581 _cell.length_c 50.954 _cell.angle_alpha 90.000 _cell.angle_beta 101.890 _cell.angle_gamma 90.000 _cell.entry_id 5V6F _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 5V6F _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hemolysin-related protein' 14932.883 1 ? ? 'lectin domain, UNP residues 823-957' ? 2 branched man 'alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose' 504.438 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 water nat water 18.015 237 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AMGSPIFGYSNTQQSQRVVTADNLMYLRSGFAIDAIGTTVNNLVGGPVQGTNGGVLRAPIALDQLQSVEVTSGLYNWGGY HIVAIKFTMKDGSSVLLGSTHYASNKKVETYTVPQGKRIKQINVWTGGWLVEGFQFVY ; _entity_poly.pdbx_seq_one_letter_code_can ;AMGSPIFGYSNTQQSQRVVTADNLMYLRSGFAIDAIGTTVNNLVGGPVQGTNGGVLRAPIALDQLQSVEVTSGLYNWGGY HIVAIKFTMKDGSSVLLGSTHYASNKKVETYTVPQGKRIKQINVWTGGWLVEGFQFVY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 GLY n 1 4 SER n 1 5 PRO n 1 6 ILE n 1 7 PHE n 1 8 GLY n 1 9 TYR n 1 10 SER n 1 11 ASN n 1 12 THR n 1 13 GLN n 1 14 GLN n 1 15 SER n 1 16 GLN n 1 17 ARG n 1 18 VAL n 1 19 VAL n 1 20 THR n 1 21 ALA n 1 22 ASP n 1 23 ASN n 1 24 LEU n 1 25 MET n 1 26 TYR n 1 27 LEU n 1 28 ARG n 1 29 SER n 1 30 GLY n 1 31 PHE n 1 32 ALA n 1 33 ILE n 1 34 ASP n 1 35 ALA n 1 36 ILE n 1 37 GLY n 1 38 THR n 1 39 THR n 1 40 VAL n 1 41 ASN n 1 42 ASN n 1 43 LEU n 1 44 VAL n 1 45 GLY n 1 46 GLY n 1 47 PRO n 1 48 VAL n 1 49 GLN n 1 50 GLY n 1 51 THR n 1 52 ASN n 1 53 GLY n 1 54 GLY n 1 55 VAL n 1 56 LEU n 1 57 ARG n 1 58 ALA n 1 59 PRO n 1 60 ILE n 1 61 ALA n 1 62 LEU n 1 63 ASP n 1 64 GLN n 1 65 LEU n 1 66 GLN n 1 67 SER n 1 68 VAL n 1 69 GLU n 1 70 VAL n 1 71 THR n 1 72 SER n 1 73 GLY n 1 74 LEU n 1 75 TYR n 1 76 ASN n 1 77 TRP n 1 78 GLY n 1 79 GLY n 1 80 TYR n 1 81 HIS n 1 82 ILE n 1 83 VAL n 1 84 ALA n 1 85 ILE n 1 86 LYS n 1 87 PHE n 1 88 THR n 1 89 MET n 1 90 LYS n 1 91 ASP n 1 92 GLY n 1 93 SER n 1 94 SER n 1 95 VAL n 1 96 LEU n 1 97 LEU n 1 98 GLY n 1 99 SER n 1 100 THR n 1 101 HIS n 1 102 TYR n 1 103 ALA n 1 104 SER n 1 105 ASN n 1 106 LYS n 1 107 LYS n 1 108 VAL n 1 109 GLU n 1 110 THR n 1 111 TYR n 1 112 THR n 1 113 VAL n 1 114 PRO n 1 115 GLN n 1 116 GLY n 1 117 LYS n 1 118 ARG n 1 119 ILE n 1 120 LYS n 1 121 GLN n 1 122 ILE n 1 123 ASN n 1 124 VAL n 1 125 TRP n 1 126 THR n 1 127 GLY n 1 128 GLY n 1 129 TRP n 1 130 LEU n 1 131 VAL n 1 132 GLU n 1 133 GLY n 1 134 PHE n 1 135 GLN n 1 136 PHE n 1 137 VAL n 1 138 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 138 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene VC_0930 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 39315 / El Tor Inaba N16961' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243277 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'NEB T7 Express' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNGFP-BC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9KTH2_VIBCH _struct_ref.pdbx_db_accession Q9KTH2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SPIFGYSNTQQSQRVVTADNLMYLRSGFAIDAIGTTVNNLVGGPVQGTNGGVLRAPIALDQLQSVEVTSGLYNWGGYHIV AIKFTMKDGSSVLLGSTHYASNKKVETYTVPQGKRIKQINVWTGGWLVEGFQFVY ; _struct_ref.pdbx_align_begin 823 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5V6F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9KTH2 _struct_ref_seq.db_align_beg 823 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 957 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 823 _struct_ref_seq.pdbx_auth_seq_align_end 957 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5V6F ALA A 1 ? UNP Q9KTH2 ? ? 'expression tag' 820 1 1 5V6F MET A 2 ? UNP Q9KTH2 ? ? 'expression tag' 821 2 1 5V6F GLY A 3 ? UNP Q9KTH2 ? ? 'expression tag' 822 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V6F _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.830 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, 2 M sodium sulfate, 2 mM mannotriose' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'OXFORD ONYX CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-26 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'SEALED TUBE' _diffrn_source.target ? _diffrn_source.type 'OXFORD DIFFRACTION NOVA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.entry_id 5V6F _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 16.112 _reflns.d_resolution_high 1.500 _reflns.number_obs 18634 _reflns.number_all ? _reflns.percent_possible_obs 95.100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_sigmaI 7.700 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.600 _reflns.pdbx_Rrim_I_all 0.097 _reflns.pdbx_Rpim_I_all 0.056 _reflns.pdbx_CC_half ? _reflns.pdbx_netI_over_av_sigmaI 7.500 _reflns.pdbx_number_measured_all 48096 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.500 1.580 ? 4411 2442 ? 0.481 1.400 0.481 ? 1.800 ? 1.500 ? ? ? ? ? ? 86.100 0.647 0.427 ? 1 2 1.580 1.680 ? 4676 2498 ? 0.322 2.200 0.322 ? 1.900 ? 2.000 ? ? ? ? ? ? 92.200 0.432 0.284 ? 1 3 1.680 1.790 ? 4808 2434 ? 0.226 3.100 0.226 ? 2.000 ? 2.600 ? ? ? ? ? ? 96.500 0.302 0.198 ? 1 4 1.790 1.940 ? 4818 2313 ? 0.150 4.000 0.150 ? 2.100 ? 3.800 ? ? ? ? ? ? 98.200 0.200 0.131 ? 1 5 1.940 2.120 ? 4865 2135 ? 0.111 5.300 0.111 ? 2.300 ? 5.600 ? ? ? ? ? ? 98.200 0.145 0.091 ? 1 6 2.120 2.370 ? 5372 1921 ? 0.097 6.000 0.097 ? 2.800 ? 7.600 ? ? ? ? ? ? 97.600 0.119 0.068 ? 1 7 2.370 2.740 ? 5310 1668 ? 0.079 8.100 0.079 ? 3.200 ? 9.600 ? ? ? ? ? ? 96.300 0.094 0.050 ? 1 8 2.740 3.350 ? 5858 1444 ? 0.051 11.500 0.051 ? 4.100 ? 16.800 ? ? ? ? ? ? 97.300 0.058 0.028 ? 1 9 3.350 4.740 ? 5249 1151 ? 0.040 13.900 0.040 ? 4.600 ? 30.000 ? ? ? ? ? ? 99.800 0.045 0.021 ? 1 10 4.740 16.112 ? 2729 628 ? 0.033 13.000 0.033 ? 4.300 ? 29.200 ? ? ? ? ? ? 95.700 0.038 0.018 ? # _refine.entry_id 5V6F _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 16.1120 _refine.pdbx_ls_sigma_F 1.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.1300 _refine.ls_number_reflns_obs 18617 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1664 _refine.ls_R_factor_R_work 0.1635 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1922 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_number_reflns_R_free 1862 _refine.ls_number_reflns_R_work 16755 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 9.2837 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1XEZ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 58.160 _refine.B_iso_min 1.090 _refine.pdbx_overall_phase_error 19.1900 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 16.1120 _refine_hist.pdbx_number_atoms_ligand 76 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 1355 _refine_hist.pdbx_number_residues_total 137 _refine_hist.pdbx_B_iso_mean_ligand 9.84 _refine_hist.pdbx_B_iso_mean_solvent 22.76 _refine_hist.pdbx_number_atoms_protein 1042 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1109 0.004 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1514 0.663 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 178 0.052 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 185 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 638 9.552 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 1.5001 1.5406 13 85.0000 1137 . 0.2759 0.3016 . 126 0.0000 1263 . 'X-RAY DIFFRACTION' . 1.5406 1.5859 13 88.0000 1195 . 0.2405 0.3029 . 133 0.0000 1328 . 'X-RAY DIFFRACTION' . 1.5859 1.6370 13 91.0000 1209 . 0.2231 0.2441 . 134 0.0000 1343 . 'X-RAY DIFFRACTION' . 1.6370 1.6955 13 94.0000 1285 . 0.2021 0.2346 . 143 0.0000 1428 . 'X-RAY DIFFRACTION' . 1.6955 1.7633 13 96.0000 1304 . 0.1900 0.2191 . 145 0.0000 1449 . 'X-RAY DIFFRACTION' . 1.7633 1.8434 13 98.0000 1303 . 0.1673 0.2148 . 145 0.0000 1448 . 'X-RAY DIFFRACTION' . 1.8434 1.9405 13 98.0000 1327 . 0.1541 0.2066 . 147 0.0000 1474 . 'X-RAY DIFFRACTION' . 1.9405 2.0618 13 98.0000 1326 . 0.1427 0.1792 . 147 0.0000 1473 . 'X-RAY DIFFRACTION' . 2.0618 2.2206 13 98.0000 1323 . 0.1374 0.1748 . 148 0.0000 1471 . 'X-RAY DIFFRACTION' . 2.2206 2.4434 13 97.0000 1320 . 0.1409 0.1682 . 147 0.0000 1467 . 'X-RAY DIFFRACTION' . 2.4434 2.7954 13 96.0000 1303 . 0.1456 0.1825 . 145 0.0000 1448 . 'X-RAY DIFFRACTION' . 2.7954 3.5159 13 98.0000 1344 . 0.1356 0.1413 . 149 0.0000 1493 . 'X-RAY DIFFRACTION' . 3.5159 16.1130 13 99.0000 1379 . 0.1594 0.1745 . 153 0.0000 1532 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5V6F _struct.title 'Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae bound to Mannotriose' _struct.pdbx_model_details 'apo form' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V6F _struct_keywords.text 'lectin, beta-prism, glycan-binding domain, mannotriose, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 1 B MAN 2 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale2 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 1 B MAN 3 1_555 ? ? ? ? ? ? ? 1.432 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 7 ? GLY A 8 ? PHE A 826 GLY A 827 AA1 2 VAL A 131 ? VAL A 137 ? VAL A 950 VAL A 956 AA1 3 GLN A 121 ? THR A 126 ? GLN A 940 THR A 945 AA1 4 GLN A 13 ? VAL A 18 ? GLN A 832 VAL A 837 AA2 1 VAL A 44 ? GLY A 45 ? VAL A 863 GLY A 864 AA2 2 ILE A 33 ? GLY A 37 ? ILE A 852 GLY A 856 AA2 3 LEU A 24 ? SER A 29 ? LEU A 843 SER A 848 AA2 4 VAL A 55 ? LEU A 56 ? VAL A 874 LEU A 875 AA3 1 VAL A 44 ? GLY A 45 ? VAL A 863 GLY A 864 AA3 2 ILE A 33 ? GLY A 37 ? ILE A 852 GLY A 856 AA3 3 LEU A 24 ? SER A 29 ? LEU A 843 SER A 848 AA3 4 ILE A 60 ? ALA A 61 ? ILE A 879 ALA A 880 AA4 1 SER A 94 ? GLY A 98 ? SER A 913 GLY A 917 AA4 2 TYR A 80 ? MET A 89 ? TYR A 899 MET A 908 AA4 3 LEU A 65 ? TYR A 75 ? LEU A 884 TYR A 894 AA4 4 ALA A 103 ? THR A 112 ? ALA A 922 THR A 931 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 7 ? N PHE A 826 O PHE A 134 ? O PHE A 953 AA1 2 3 O GLY A 133 ? O GLY A 952 N TRP A 125 ? N TRP A 944 AA1 3 4 O VAL A 124 ? O VAL A 943 N SER A 15 ? N SER A 834 AA2 1 2 O VAL A 44 ? O VAL A 863 N ILE A 36 ? N ILE A 855 AA2 2 3 O GLY A 37 ? O GLY A 856 N TYR A 26 ? N TYR A 845 AA2 3 4 N SER A 29 ? N SER A 848 O VAL A 55 ? O VAL A 874 AA3 1 2 O VAL A 44 ? O VAL A 863 N ILE A 36 ? N ILE A 855 AA3 2 3 O GLY A 37 ? O GLY A 856 N TYR A 26 ? N TYR A 845 AA3 3 4 N MET A 25 ? N MET A 844 O ILE A 60 ? O ILE A 879 AA4 1 2 O VAL A 95 ? O VAL A 914 N PHE A 87 ? N PHE A 906 AA4 2 3 O THR A 88 ? O THR A 907 N GLN A 66 ? N GLN A 885 AA4 3 4 N VAL A 70 ? N VAL A 889 O GLU A 109 ? O GLU A 928 # _atom_sites.entry_id 5V6F _atom_sites.fract_transf_matrix[1][1] 0.031366 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006605 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025920 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020056 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 820 ? ? ? A . n A 1 2 MET 2 821 821 MET MET A . n A 1 3 GLY 3 822 822 GLY GLY A . n A 1 4 SER 4 823 823 SER SER A . n A 1 5 PRO 5 824 824 PRO PRO A . n A 1 6 ILE 6 825 825 ILE ILE A . n A 1 7 PHE 7 826 826 PHE PHE A . n A 1 8 GLY 8 827 827 GLY GLY A . n A 1 9 TYR 9 828 828 TYR TYR A . n A 1 10 SER 10 829 829 SER SER A . n A 1 11 ASN 11 830 830 ASN ASN A . n A 1 12 THR 12 831 831 THR THR A . n A 1 13 GLN 13 832 832 GLN GLN A . n A 1 14 GLN 14 833 833 GLN GLN A . n A 1 15 SER 15 834 834 SER SER A . n A 1 16 GLN 16 835 835 GLN GLN A . n A 1 17 ARG 17 836 836 ARG ARG A . n A 1 18 VAL 18 837 837 VAL VAL A . n A 1 19 VAL 19 838 838 VAL VAL A . n A 1 20 THR 20 839 839 THR THR A . n A 1 21 ALA 21 840 840 ALA ALA A . n A 1 22 ASP 22 841 841 ASP ASP A . n A 1 23 ASN 23 842 842 ASN ASN A . n A 1 24 LEU 24 843 843 LEU LEU A . n A 1 25 MET 25 844 844 MET MET A . n A 1 26 TYR 26 845 845 TYR TYR A . n A 1 27 LEU 27 846 846 LEU LEU A . n A 1 28 ARG 28 847 847 ARG ARG A . n A 1 29 SER 29 848 848 SER SER A . n A 1 30 GLY 30 849 849 GLY GLY A . n A 1 31 PHE 31 850 850 PHE PHE A . n A 1 32 ALA 32 851 851 ALA ALA A . n A 1 33 ILE 33 852 852 ILE ILE A . n A 1 34 ASP 34 853 853 ASP ASP A . n A 1 35 ALA 35 854 854 ALA ALA A . n A 1 36 ILE 36 855 855 ILE ILE A . n A 1 37 GLY 37 856 856 GLY GLY A . n A 1 38 THR 38 857 857 THR THR A . n A 1 39 THR 39 858 858 THR THR A . n A 1 40 VAL 40 859 859 VAL VAL A . n A 1 41 ASN 41 860 860 ASN ASN A . n A 1 42 ASN 42 861 861 ASN ASN A . n A 1 43 LEU 43 862 862 LEU LEU A . n A 1 44 VAL 44 863 863 VAL VAL A . n A 1 45 GLY 45 864 864 GLY GLY A . n A 1 46 GLY 46 865 865 GLY GLY A . n A 1 47 PRO 47 866 866 PRO PRO A . n A 1 48 VAL 48 867 867 VAL VAL A . n A 1 49 GLN 49 868 868 GLN GLN A . n A 1 50 GLY 50 869 869 GLY GLY A . n A 1 51 THR 51 870 870 THR THR A . n A 1 52 ASN 52 871 871 ASN ASN A . n A 1 53 GLY 53 872 872 GLY GLY A . n A 1 54 GLY 54 873 873 GLY GLY A . n A 1 55 VAL 55 874 874 VAL VAL A . n A 1 56 LEU 56 875 875 LEU LEU A . n A 1 57 ARG 57 876 876 ARG ARG A . n A 1 58 ALA 58 877 877 ALA ALA A . n A 1 59 PRO 59 878 878 PRO PRO A . n A 1 60 ILE 60 879 879 ILE ILE A . n A 1 61 ALA 61 880 880 ALA ALA A . n A 1 62 LEU 62 881 881 LEU LEU A . n A 1 63 ASP 63 882 882 ASP ASP A . n A 1 64 GLN 64 883 883 GLN GLN A . n A 1 65 LEU 65 884 884 LEU LEU A . n A 1 66 GLN 66 885 885 GLN GLN A . n A 1 67 SER 67 886 886 SER SER A . n A 1 68 VAL 68 887 887 VAL VAL A . n A 1 69 GLU 69 888 888 GLU GLU A . n A 1 70 VAL 70 889 889 VAL VAL A . n A 1 71 THR 71 890 890 THR THR A . n A 1 72 SER 72 891 891 SER SER A . n A 1 73 GLY 73 892 892 GLY GLY A . n A 1 74 LEU 74 893 893 LEU LEU A . n A 1 75 TYR 75 894 894 TYR TYR A . n A 1 76 ASN 76 895 895 ASN ASN A . n A 1 77 TRP 77 896 896 TRP TRP A . n A 1 78 GLY 78 897 897 GLY GLY A . n A 1 79 GLY 79 898 898 GLY GLY A . n A 1 80 TYR 80 899 899 TYR TYR A . n A 1 81 HIS 81 900 900 HIS HIS A . n A 1 82 ILE 82 901 901 ILE ILE A . n A 1 83 VAL 83 902 902 VAL VAL A . n A 1 84 ALA 84 903 903 ALA ALA A . n A 1 85 ILE 85 904 904 ILE ILE A . n A 1 86 LYS 86 905 905 LYS LYS A . n A 1 87 PHE 87 906 906 PHE PHE A . n A 1 88 THR 88 907 907 THR THR A . n A 1 89 MET 89 908 908 MET MET A . n A 1 90 LYS 90 909 909 LYS LYS A . n A 1 91 ASP 91 910 910 ASP ASP A . n A 1 92 GLY 92 911 911 GLY GLY A . n A 1 93 SER 93 912 912 SER SER A . n A 1 94 SER 94 913 913 SER SER A . n A 1 95 VAL 95 914 914 VAL VAL A . n A 1 96 LEU 96 915 915 LEU LEU A . n A 1 97 LEU 97 916 916 LEU LEU A . n A 1 98 GLY 98 917 917 GLY GLY A . n A 1 99 SER 99 918 918 SER SER A . n A 1 100 THR 100 919 919 THR THR A . n A 1 101 HIS 101 920 920 HIS HIS A . n A 1 102 TYR 102 921 921 TYR TYR A . n A 1 103 ALA 103 922 922 ALA ALA A . n A 1 104 SER 104 923 923 SER SER A . n A 1 105 ASN 105 924 924 ASN ASN A . n A 1 106 LYS 106 925 925 LYS LYS A . n A 1 107 LYS 107 926 926 LYS LYS A . n A 1 108 VAL 108 927 927 VAL VAL A . n A 1 109 GLU 109 928 928 GLU GLU A . n A 1 110 THR 110 929 929 THR THR A . n A 1 111 TYR 111 930 930 TYR TYR A . n A 1 112 THR 112 931 931 THR THR A . n A 1 113 VAL 113 932 932 VAL VAL A . n A 1 114 PRO 114 933 933 PRO PRO A . n A 1 115 GLN 115 934 934 GLN GLN A . n A 1 116 GLY 116 935 935 GLY GLY A . n A 1 117 LYS 117 936 936 LYS LYS A . n A 1 118 ARG 118 937 937 ARG ARG A . n A 1 119 ILE 119 938 938 ILE ILE A . n A 1 120 LYS 120 939 939 LYS LYS A . n A 1 121 GLN 121 940 940 GLN GLN A . n A 1 122 ILE 122 941 941 ILE ILE A . n A 1 123 ASN 123 942 942 ASN ASN A . n A 1 124 VAL 124 943 943 VAL VAL A . n A 1 125 TRP 125 944 944 TRP TRP A . n A 1 126 THR 126 945 945 THR THR A . n A 1 127 GLY 127 946 946 GLY GLY A . n A 1 128 GLY 128 947 947 GLY GLY A . n A 1 129 TRP 129 948 948 TRP TRP A . n A 1 130 LEU 130 949 949 LEU LEU A . n A 1 131 VAL 131 950 950 VAL VAL A . n A 1 132 GLU 132 951 951 GLU GLU A . n A 1 133 GLY 133 952 952 GLY GLY A . n A 1 134 PHE 134 953 953 PHE PHE A . n A 1 135 GLN 135 954 954 GLN GLN A . n A 1 136 PHE 136 955 955 PHE PHE A . n A 1 137 VAL 137 956 956 VAL VAL A . n A 1 138 TYR 138 957 957 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 1004 1004 SO4 SO4 A . D 3 SO4 1 1005 1005 SO4 SO4 A . E 4 HOH 1 1101 1260 HOH HOH A . E 4 HOH 2 1102 1144 HOH HOH A . E 4 HOH 3 1103 1247 HOH HOH A . E 4 HOH 4 1104 1186 HOH HOH A . E 4 HOH 5 1105 1185 HOH HOH A . E 4 HOH 6 1106 1126 HOH HOH A . E 4 HOH 7 1107 1125 HOH HOH A . E 4 HOH 8 1108 1138 HOH HOH A . E 4 HOH 9 1109 1175 HOH HOH A . E 4 HOH 10 1110 1161 HOH HOH A . E 4 HOH 11 1111 1284 HOH HOH A . E 4 HOH 12 1112 1171 HOH HOH A . E 4 HOH 13 1113 1275 HOH HOH A . E 4 HOH 14 1114 1182 HOH HOH A . E 4 HOH 15 1115 1164 HOH HOH A . E 4 HOH 16 1116 1287 HOH HOH A . E 4 HOH 17 1117 1120 HOH HOH A . E 4 HOH 18 1118 1261 HOH HOH A . E 4 HOH 19 1119 1142 HOH HOH A . E 4 HOH 20 1120 1220 HOH HOH A . E 4 HOH 21 1121 1273 HOH HOH A . E 4 HOH 22 1122 1240 HOH HOH A . E 4 HOH 23 1123 1242 HOH HOH A . E 4 HOH 24 1124 1184 HOH HOH A . E 4 HOH 25 1125 1163 HOH HOH A . E 4 HOH 26 1126 1137 HOH HOH A . E 4 HOH 27 1127 1187 HOH HOH A . E 4 HOH 28 1128 1118 HOH HOH A . E 4 HOH 29 1129 1134 HOH HOH A . E 4 HOH 30 1130 1223 HOH HOH A . E 4 HOH 31 1131 1117 HOH HOH A . E 4 HOH 32 1132 1189 HOH HOH A . E 4 HOH 33 1133 1152 HOH HOH A . E 4 HOH 34 1134 1314 HOH HOH A . E 4 HOH 35 1135 1115 HOH HOH A . E 4 HOH 36 1136 1243 HOH HOH A . E 4 HOH 37 1137 1116 HOH HOH A . E 4 HOH 38 1138 1191 HOH HOH A . E 4 HOH 39 1139 1230 HOH HOH A . E 4 HOH 40 1140 1101 HOH HOH A . E 4 HOH 41 1141 1104 HOH HOH A . E 4 HOH 42 1142 1201 HOH HOH A . E 4 HOH 43 1143 1271 HOH HOH A . E 4 HOH 44 1144 1102 HOH HOH A . E 4 HOH 45 1145 1123 HOH HOH A . E 4 HOH 46 1146 1156 HOH HOH A . E 4 HOH 47 1147 1109 HOH HOH A . E 4 HOH 48 1148 1113 HOH HOH A . E 4 HOH 49 1149 1254 HOH HOH A . E 4 HOH 50 1150 1285 HOH HOH A . E 4 HOH 51 1151 1294 HOH HOH A . E 4 HOH 52 1152 1327 HOH HOH A . E 4 HOH 53 1153 1165 HOH HOH A . E 4 HOH 54 1154 1233 HOH HOH A . E 4 HOH 55 1155 1136 HOH HOH A . E 4 HOH 56 1156 1112 HOH HOH A . E 4 HOH 57 1157 1103 HOH HOH A . E 4 HOH 58 1158 1110 HOH HOH A . E 4 HOH 59 1159 1106 HOH HOH A . E 4 HOH 60 1160 1160 HOH HOH A . E 4 HOH 61 1161 1119 HOH HOH A . E 4 HOH 62 1162 1195 HOH HOH A . E 4 HOH 63 1163 1257 HOH HOH A . E 4 HOH 64 1164 1143 HOH HOH A . E 4 HOH 65 1165 1313 HOH HOH A . E 4 HOH 66 1166 1270 HOH HOH A . E 4 HOH 67 1167 1149 HOH HOH A . E 4 HOH 68 1168 1272 HOH HOH A . E 4 HOH 69 1169 1167 HOH HOH A . E 4 HOH 70 1170 1155 HOH HOH A . E 4 HOH 71 1171 1150 HOH HOH A . E 4 HOH 72 1172 1121 HOH HOH A . E 4 HOH 73 1173 1332 HOH HOH A . E 4 HOH 74 1174 1259 HOH HOH A . E 4 HOH 75 1175 1158 HOH HOH A . E 4 HOH 76 1176 1129 HOH HOH A . E 4 HOH 77 1177 1174 HOH HOH A . E 4 HOH 78 1178 1135 HOH HOH A . E 4 HOH 79 1179 1107 HOH HOH A . E 4 HOH 80 1180 1188 HOH HOH A . E 4 HOH 81 1181 1132 HOH HOH A . E 4 HOH 82 1182 1199 HOH HOH A . E 4 HOH 83 1183 1281 HOH HOH A . E 4 HOH 84 1184 1228 HOH HOH A . E 4 HOH 85 1185 1255 HOH HOH A . E 4 HOH 86 1186 1169 HOH HOH A . E 4 HOH 87 1187 1211 HOH HOH A . E 4 HOH 88 1188 1111 HOH HOH A . E 4 HOH 89 1189 1198 HOH HOH A . E 4 HOH 90 1190 1157 HOH HOH A . E 4 HOH 91 1191 1229 HOH HOH A . E 4 HOH 92 1192 1297 HOH HOH A . E 4 HOH 93 1193 1131 HOH HOH A . E 4 HOH 94 1194 1265 HOH HOH A . E 4 HOH 95 1195 1153 HOH HOH A . E 4 HOH 96 1196 1232 HOH HOH A . E 4 HOH 97 1197 1183 HOH HOH A . E 4 HOH 98 1198 1200 HOH HOH A . E 4 HOH 99 1199 1237 HOH HOH A . E 4 HOH 100 1200 1148 HOH HOH A . E 4 HOH 101 1201 1130 HOH HOH A . E 4 HOH 102 1202 1146 HOH HOH A . E 4 HOH 103 1203 1330 HOH HOH A . E 4 HOH 104 1204 1170 HOH HOH A . E 4 HOH 105 1205 1145 HOH HOH A . E 4 HOH 106 1206 1108 HOH HOH A . E 4 HOH 107 1207 1309 HOH HOH A . E 4 HOH 108 1208 1246 HOH HOH A . E 4 HOH 109 1209 1105 HOH HOH A . E 4 HOH 110 1210 1179 HOH HOH A . E 4 HOH 111 1211 1133 HOH HOH A . E 4 HOH 112 1212 1127 HOH HOH A . E 4 HOH 113 1213 1256 HOH HOH A . E 4 HOH 114 1214 1301 HOH HOH A . E 4 HOH 115 1215 1173 HOH HOH A . E 4 HOH 116 1216 1315 HOH HOH A . E 4 HOH 117 1217 1215 HOH HOH A . E 4 HOH 118 1218 1269 HOH HOH A . E 4 HOH 119 1219 1239 HOH HOH A . E 4 HOH 120 1220 1276 HOH HOH A . E 4 HOH 121 1221 1151 HOH HOH A . E 4 HOH 122 1222 1114 HOH HOH A . E 4 HOH 123 1223 1202 HOH HOH A . E 4 HOH 124 1224 1178 HOH HOH A . E 4 HOH 125 1225 1274 HOH HOH A . E 4 HOH 126 1226 1141 HOH HOH A . E 4 HOH 127 1227 1235 HOH HOH A . E 4 HOH 128 1228 1180 HOH HOH A . E 4 HOH 129 1229 1192 HOH HOH A . E 4 HOH 130 1230 1241 HOH HOH A . E 4 HOH 131 1231 1190 HOH HOH A . E 4 HOH 132 1232 1154 HOH HOH A . E 4 HOH 133 1233 1258 HOH HOH A . E 4 HOH 134 1234 1251 HOH HOH A . E 4 HOH 135 1235 1176 HOH HOH A . E 4 HOH 136 1236 1283 HOH HOH A . E 4 HOH 137 1237 1282 HOH HOH A . E 4 HOH 138 1238 1280 HOH HOH A . E 4 HOH 139 1239 1212 HOH HOH A . E 4 HOH 140 1240 1296 HOH HOH A . E 4 HOH 141 1241 1128 HOH HOH A . E 4 HOH 142 1242 1278 HOH HOH A . E 4 HOH 143 1243 1231 HOH HOH A . E 4 HOH 144 1244 1210 HOH HOH A . E 4 HOH 145 1245 1291 HOH HOH A . E 4 HOH 146 1246 1124 HOH HOH A . E 4 HOH 147 1247 1310 HOH HOH A . E 4 HOH 148 1248 1326 HOH HOH A . E 4 HOH 149 1249 1249 HOH HOH A . E 4 HOH 150 1250 1177 HOH HOH A . E 4 HOH 151 1251 1166 HOH HOH A . E 4 HOH 152 1252 1323 HOH HOH A . E 4 HOH 153 1253 1193 HOH HOH A . E 4 HOH 154 1254 1268 HOH HOH A . E 4 HOH 155 1255 1181 HOH HOH A . E 4 HOH 156 1256 1216 HOH HOH A . E 4 HOH 157 1257 1306 HOH HOH A . E 4 HOH 158 1258 1208 HOH HOH A . E 4 HOH 159 1259 1266 HOH HOH A . E 4 HOH 160 1260 1209 HOH HOH A . E 4 HOH 161 1261 1302 HOH HOH A . E 4 HOH 162 1262 1236 HOH HOH A . E 4 HOH 163 1263 1234 HOH HOH A . E 4 HOH 164 1264 1293 HOH HOH A . E 4 HOH 165 1265 1288 HOH HOH A . E 4 HOH 166 1266 1325 HOH HOH A . E 4 HOH 167 1267 1295 HOH HOH A . E 4 HOH 168 1268 1207 HOH HOH A . E 4 HOH 169 1269 1248 HOH HOH A . E 4 HOH 170 1270 1147 HOH HOH A . E 4 HOH 171 1271 1168 HOH HOH A . E 4 HOH 172 1272 1217 HOH HOH A . E 4 HOH 173 1273 1225 HOH HOH A . E 4 HOH 174 1274 1218 HOH HOH A . E 4 HOH 175 1275 1277 HOH HOH A . E 4 HOH 176 1276 1279 HOH HOH A . E 4 HOH 177 1277 1335 HOH HOH A . E 4 HOH 178 1278 1308 HOH HOH A . E 4 HOH 179 1279 1226 HOH HOH A . E 4 HOH 180 1280 1205 HOH HOH A . E 4 HOH 181 1281 1333 HOH HOH A . E 4 HOH 182 1282 1289 HOH HOH A . E 4 HOH 183 1283 1206 HOH HOH A . E 4 HOH 184 1284 1222 HOH HOH A . E 4 HOH 185 1285 1334 HOH HOH A . E 4 HOH 186 1286 1204 HOH HOH A . E 4 HOH 187 1287 1122 HOH HOH A . E 4 HOH 188 1288 1320 HOH HOH A . E 4 HOH 189 1289 1262 HOH HOH A . E 4 HOH 190 1290 1227 HOH HOH A . E 4 HOH 191 1291 1324 HOH HOH A . E 4 HOH 192 1292 1213 HOH HOH A . E 4 HOH 193 1293 1307 HOH HOH A . E 4 HOH 194 1294 1214 HOH HOH A . E 4 HOH 195 1295 1299 HOH HOH A . E 4 HOH 196 1296 1245 HOH HOH A . E 4 HOH 197 1297 1298 HOH HOH A . E 4 HOH 198 1298 1159 HOH HOH A . E 4 HOH 199 1299 1172 HOH HOH A . E 4 HOH 200 1300 1290 HOH HOH A . E 4 HOH 201 1301 1162 HOH HOH A . E 4 HOH 202 1302 1331 HOH HOH A . E 4 HOH 203 1303 1253 HOH HOH A . E 4 HOH 204 1304 1244 HOH HOH A . E 4 HOH 205 1305 1286 HOH HOH A . E 4 HOH 206 1306 1194 HOH HOH A . E 4 HOH 207 1307 1196 HOH HOH A . E 4 HOH 208 1308 1197 HOH HOH A . E 4 HOH 209 1309 1304 HOH HOH A . E 4 HOH 210 1310 1312 HOH HOH A . E 4 HOH 211 1311 1317 HOH HOH A . E 4 HOH 212 1312 1267 HOH HOH A . E 4 HOH 213 1313 1292 HOH HOH A . E 4 HOH 214 1314 1252 HOH HOH A . E 4 HOH 215 1315 1224 HOH HOH A . E 4 HOH 216 1316 1203 HOH HOH A . E 4 HOH 217 1317 1263 HOH HOH A . E 4 HOH 218 1318 1238 HOH HOH A . E 4 HOH 219 1319 1328 HOH HOH A . E 4 HOH 220 1320 1250 HOH HOH A . E 4 HOH 221 1321 1337 HOH HOH A . E 4 HOH 222 1322 1329 HOH HOH A . E 4 HOH 223 1323 1219 HOH HOH A . E 4 HOH 224 1324 1140 HOH HOH A . E 4 HOH 225 1325 1139 HOH HOH A . E 4 HOH 226 1326 1322 HOH HOH A . E 4 HOH 227 1327 1319 HOH HOH A . E 4 HOH 228 1328 1303 HOH HOH A . E 4 HOH 229 1329 1321 HOH HOH A . E 4 HOH 230 1330 1300 HOH HOH A . E 4 HOH 231 1331 1305 HOH HOH A . E 4 HOH 232 1332 1264 HOH HOH A . E 4 HOH 233 1333 1336 HOH HOH A . E 4 HOH 234 1334 1221 HOH HOH A . E 4 HOH 235 1335 1318 HOH HOH A . E 4 HOH 236 1336 1311 HOH HOH A . E 4 HOH 237 1337 1316 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-01-17 2 'Structure model' 1 1 2018-02-28 3 'Structure model' 1 2 2019-12-11 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-10-04 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly_gen 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' database_2 23 5 'Structure model' pdbx_initial_refinement_model 24 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_pdbx_audit_support.funding_organization' 13 4 'Structure model' '_atom_site.B_iso_or_equiv' 14 4 'Structure model' '_atom_site.Cartn_x' 15 4 'Structure model' '_atom_site.Cartn_y' 16 4 'Structure model' '_atom_site.Cartn_z' 17 4 'Structure model' '_atom_site.auth_asym_id' 18 4 'Structure model' '_atom_site.auth_atom_id' 19 4 'Structure model' '_atom_site.auth_comp_id' 20 4 'Structure model' '_atom_site.auth_seq_id' 21 4 'Structure model' '_atom_site.label_asym_id' 22 4 'Structure model' '_atom_site.label_atom_id' 23 4 'Structure model' '_atom_site.label_comp_id' 24 4 'Structure model' '_atom_site.label_entity_id' 25 4 'Structure model' '_atom_site.type_symbol' 26 4 'Structure model' '_chem_comp.name' 27 4 'Structure model' '_chem_comp.type' 28 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_chem_comp.pdbx_synonyms' 42 5 'Structure model' '_database_2.pdbx_DOI' 43 5 'Structure model' '_database_2.pdbx_database_accession' 44 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_phasing_MR.entry_id 5V6F _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.500 _pdbx_phasing_MR.d_res_low_rotation 16.110 _pdbx_phasing_MR.d_res_high_translation 1.500 _pdbx_phasing_MR.d_res_low_translation 16.110 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.22 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.6.1 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HE21 A GLN 883 ? ? O A HOH 1102 ? ? 1.39 2 1 HE21 A GLN 835 ? ? O A HOH 1101 ? ? 1.42 3 1 O A HOH 1321 ? ? O A HOH 1331 ? ? 1.84 4 1 O A HOH 1165 ? ? O A HOH 1288 ? ? 1.84 5 1 O A HOH 1264 ? ? O A HOH 1331 ? ? 1.86 6 1 O A HOH 1116 ? ? O A HOH 1239 ? ? 1.92 7 1 O A HOH 1252 ? ? O A HOH 1277 ? ? 1.92 8 1 O A HOH 1264 ? ? O A HOH 1321 ? ? 1.92 9 1 O A HOH 1281 ? ? O A HOH 1324 ? ? 1.99 10 1 O A HOH 1262 ? ? O A HOH 1273 ? ? 2.00 11 1 O A HOH 1203 ? ? O A HOH 1248 ? ? 2.03 12 1 NE2 A GLN 835 ? ? O A HOH 1101 ? ? 2.04 13 1 O A HOH 1152 ? ? O A HOH 1281 ? ? 2.05 14 1 O A HOH 1221 ? ? O A HOH 1281 ? ? 2.08 15 1 O A HOH 1213 ? ? O A HOH 1310 ? ? 2.08 16 1 O A HOH 1219 ? ? O A HOH 1261 ? ? 2.11 17 1 NE2 A GLN 883 ? ? O A HOH 1102 ? ? 2.15 18 1 O A HOH 1142 ? ? O A HOH 1302 ? ? 2.16 19 1 O A HOH 1292 ? ? O A HOH 1323 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 1122 ? ? 1_555 O A HOH 1199 ? ? 1_455 1.85 2 1 O A HOH 1104 ? ? 1_555 O A HOH 1225 ? ? 2_555 1.87 3 1 O A HOH 1230 ? ? 1_555 O A HOH 1265 ? ? 1_655 2.01 4 1 O A HOH 1116 ? ? 1_555 O A HOH 1265 ? ? 1_655 2.02 5 1 O A HOH 1249 ? ? 1_555 O A HOH 1269 ? ? 1_565 2.06 6 1 O A HOH 1255 ? ? 1_555 O A HOH 1271 ? ? 1_545 2.07 7 1 O A HOH 1113 ? ? 1_555 O A HOH 1275 ? ? 2_545 2.08 8 1 O A HOH 1111 ? ? 1_555 O A HOH 1182 ? ? 2_544 2.09 9 1 O A HOH 1192 ? ? 1_555 O A HOH 1278 ? ? 2_545 2.15 10 1 O A HOH 1165 ? ? 1_555 O A HOH 1214 ? ? 2_545 2.19 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 948 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -122.00 _pdbx_validate_torsion.psi -58.14 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 1337 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.48 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 821 ? CG ? A MET 2 CG 2 1 Y 1 A MET 821 ? SD ? A MET 2 SD 3 1 Y 1 A MET 821 ? CE ? A MET 2 CE 4 1 Y 1 A GLN 934 ? CG ? A GLN 115 CG 5 1 Y 1 A GLN 934 ? CD ? A GLN 115 CD 6 1 Y 1 A GLN 934 ? OE1 ? A GLN 115 OE1 7 1 Y 1 A GLN 934 ? NE2 ? A GLN 115 NE2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ALA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 820 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ALA _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MAN C1 C N S 240 MAN C2 C N S 241 MAN C3 C N S 242 MAN C4 C N S 243 MAN C5 C N R 244 MAN C6 C N N 245 MAN O1 O N N 246 MAN O2 O N N 247 MAN O3 O N N 248 MAN O4 O N N 249 MAN O5 O N N 250 MAN O6 O N N 251 MAN H1 H N N 252 MAN H2 H N N 253 MAN H3 H N N 254 MAN H4 H N N 255 MAN H5 H N N 256 MAN H61 H N N 257 MAN H62 H N N 258 MAN HO1 H N N 259 MAN HO2 H N N 260 MAN HO3 H N N 261 MAN HO4 H N N 262 MAN HO6 H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 SER N N N N 324 SER CA C N S 325 SER C C N N 326 SER O O N N 327 SER CB C N N 328 SER OG O N N 329 SER OXT O N N 330 SER H H N N 331 SER H2 H N N 332 SER HA H N N 333 SER HB2 H N N 334 SER HB3 H N N 335 SER HG H N N 336 SER HXT H N N 337 SO4 S S N N 338 SO4 O1 O N N 339 SO4 O2 O N N 340 SO4 O3 O N N 341 SO4 O4 O N N 342 THR N N N N 343 THR CA C N S 344 THR C C N N 345 THR O O N N 346 THR CB C N R 347 THR OG1 O N N 348 THR CG2 C N N 349 THR OXT O N N 350 THR H H N N 351 THR H2 H N N 352 THR HA H N N 353 THR HB H N N 354 THR HG1 H N N 355 THR HG21 H N N 356 THR HG22 H N N 357 THR HG23 H N N 358 THR HXT H N N 359 TRP N N N N 360 TRP CA C N S 361 TRP C C N N 362 TRP O O N N 363 TRP CB C N N 364 TRP CG C Y N 365 TRP CD1 C Y N 366 TRP CD2 C Y N 367 TRP NE1 N Y N 368 TRP CE2 C Y N 369 TRP CE3 C Y N 370 TRP CZ2 C Y N 371 TRP CZ3 C Y N 372 TRP CH2 C Y N 373 TRP OXT O N N 374 TRP H H N N 375 TRP H2 H N N 376 TRP HA H N N 377 TRP HB2 H N N 378 TRP HB3 H N N 379 TRP HD1 H N N 380 TRP HE1 H N N 381 TRP HE3 H N N 382 TRP HZ2 H N N 383 TRP HZ3 H N N 384 TRP HH2 H N N 385 TRP HXT H N N 386 TYR N N N N 387 TYR CA C N S 388 TYR C C N N 389 TYR O O N N 390 TYR CB C N N 391 TYR CG C Y N 392 TYR CD1 C Y N 393 TYR CD2 C Y N 394 TYR CE1 C Y N 395 TYR CE2 C Y N 396 TYR CZ C Y N 397 TYR OH O N N 398 TYR OXT O N N 399 TYR H H N N 400 TYR H2 H N N 401 TYR HA H N N 402 TYR HB2 H N N 403 TYR HB3 H N N 404 TYR HD1 H N N 405 TYR HD2 H N N 406 TYR HE1 H N N 407 TYR HE2 H N N 408 TYR HH H N N 409 TYR HXT H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 GLN N CA sing N N 94 GLN N H sing N N 95 GLN N H2 sing N N 96 GLN CA C sing N N 97 GLN CA CB sing N N 98 GLN CA HA sing N N 99 GLN C O doub N N 100 GLN C OXT sing N N 101 GLN CB CG sing N N 102 GLN CB HB2 sing N N 103 GLN CB HB3 sing N N 104 GLN CG CD sing N N 105 GLN CG HG2 sing N N 106 GLN CG HG3 sing N N 107 GLN CD OE1 doub N N 108 GLN CD NE2 sing N N 109 GLN NE2 HE21 sing N N 110 GLN NE2 HE22 sing N N 111 GLN OXT HXT sing N N 112 GLU N CA sing N N 113 GLU N H sing N N 114 GLU N H2 sing N N 115 GLU CA C sing N N 116 GLU CA CB sing N N 117 GLU CA HA sing N N 118 GLU C O doub N N 119 GLU C OXT sing N N 120 GLU CB CG sing N N 121 GLU CB HB2 sing N N 122 GLU CB HB3 sing N N 123 GLU CG CD sing N N 124 GLU CG HG2 sing N N 125 GLU CG HG3 sing N N 126 GLU CD OE1 doub N N 127 GLU CD OE2 sing N N 128 GLU OE2 HE2 sing N N 129 GLU OXT HXT sing N N 130 GLY N CA sing N N 131 GLY N H sing N N 132 GLY N H2 sing N N 133 GLY CA C sing N N 134 GLY CA HA2 sing N N 135 GLY CA HA3 sing N N 136 GLY C O doub N N 137 GLY C OXT sing N N 138 GLY OXT HXT sing N N 139 HIS N CA sing N N 140 HIS N H sing N N 141 HIS N H2 sing N N 142 HIS CA C sing N N 143 HIS CA CB sing N N 144 HIS CA HA sing N N 145 HIS C O doub N N 146 HIS C OXT sing N N 147 HIS CB CG sing N N 148 HIS CB HB2 sing N N 149 HIS CB HB3 sing N N 150 HIS CG ND1 sing Y N 151 HIS CG CD2 doub Y N 152 HIS ND1 CE1 doub Y N 153 HIS ND1 HD1 sing N N 154 HIS CD2 NE2 sing Y N 155 HIS CD2 HD2 sing N N 156 HIS CE1 NE2 sing Y N 157 HIS CE1 HE1 sing N N 158 HIS NE2 HE2 sing N N 159 HIS OXT HXT sing N N 160 HOH O H1 sing N N 161 HOH O H2 sing N N 162 ILE N CA sing N N 163 ILE N H sing N N 164 ILE N H2 sing N N 165 ILE CA C sing N N 166 ILE CA CB sing N N 167 ILE CA HA sing N N 168 ILE C O doub N N 169 ILE C OXT sing N N 170 ILE CB CG1 sing N N 171 ILE CB CG2 sing N N 172 ILE CB HB sing N N 173 ILE CG1 CD1 sing N N 174 ILE CG1 HG12 sing N N 175 ILE CG1 HG13 sing N N 176 ILE CG2 HG21 sing N N 177 ILE CG2 HG22 sing N N 178 ILE CG2 HG23 sing N N 179 ILE CD1 HD11 sing N N 180 ILE CD1 HD12 sing N N 181 ILE CD1 HD13 sing N N 182 ILE OXT HXT sing N N 183 LEU N CA sing N N 184 LEU N H sing N N 185 LEU N H2 sing N N 186 LEU CA C sing N N 187 LEU CA CB sing N N 188 LEU CA HA sing N N 189 LEU C O doub N N 190 LEU C OXT sing N N 191 LEU CB CG sing N N 192 LEU CB HB2 sing N N 193 LEU CB HB3 sing N N 194 LEU CG CD1 sing N N 195 LEU CG CD2 sing N N 196 LEU CG HG sing N N 197 LEU CD1 HD11 sing N N 198 LEU CD1 HD12 sing N N 199 LEU CD1 HD13 sing N N 200 LEU CD2 HD21 sing N N 201 LEU CD2 HD22 sing N N 202 LEU CD2 HD23 sing N N 203 LEU OXT HXT sing N N 204 LYS N CA sing N N 205 LYS N H sing N N 206 LYS N H2 sing N N 207 LYS CA C sing N N 208 LYS CA CB sing N N 209 LYS CA HA sing N N 210 LYS C O doub N N 211 LYS C OXT sing N N 212 LYS CB CG sing N N 213 LYS CB HB2 sing N N 214 LYS CB HB3 sing N N 215 LYS CG CD sing N N 216 LYS CG HG2 sing N N 217 LYS CG HG3 sing N N 218 LYS CD CE sing N N 219 LYS CD HD2 sing N N 220 LYS CD HD3 sing N N 221 LYS CE NZ sing N N 222 LYS CE HE2 sing N N 223 LYS CE HE3 sing N N 224 LYS NZ HZ1 sing N N 225 LYS NZ HZ2 sing N N 226 LYS NZ HZ3 sing N N 227 LYS OXT HXT sing N N 228 MAN C1 C2 sing N N 229 MAN C1 O1 sing N N 230 MAN C1 O5 sing N N 231 MAN C1 H1 sing N N 232 MAN C2 C3 sing N N 233 MAN C2 O2 sing N N 234 MAN C2 H2 sing N N 235 MAN C3 C4 sing N N 236 MAN C3 O3 sing N N 237 MAN C3 H3 sing N N 238 MAN C4 C5 sing N N 239 MAN C4 O4 sing N N 240 MAN C4 H4 sing N N 241 MAN C5 C6 sing N N 242 MAN C5 O5 sing N N 243 MAN C5 H5 sing N N 244 MAN C6 O6 sing N N 245 MAN C6 H61 sing N N 246 MAN C6 H62 sing N N 247 MAN O1 HO1 sing N N 248 MAN O2 HO2 sing N N 249 MAN O3 HO3 sing N N 250 MAN O4 HO4 sing N N 251 MAN O6 HO6 sing N N 252 MET N CA sing N N 253 MET N H sing N N 254 MET N H2 sing N N 255 MET CA C sing N N 256 MET CA CB sing N N 257 MET CA HA sing N N 258 MET C O doub N N 259 MET C OXT sing N N 260 MET CB CG sing N N 261 MET CB HB2 sing N N 262 MET CB HB3 sing N N 263 MET CG SD sing N N 264 MET CG HG2 sing N N 265 MET CG HG3 sing N N 266 MET SD CE sing N N 267 MET CE HE1 sing N N 268 MET CE HE2 sing N N 269 MET CE HE3 sing N N 270 MET OXT HXT sing N N 271 PHE N CA sing N N 272 PHE N H sing N N 273 PHE N H2 sing N N 274 PHE CA C sing N N 275 PHE CA CB sing N N 276 PHE CA HA sing N N 277 PHE C O doub N N 278 PHE C OXT sing N N 279 PHE CB CG sing N N 280 PHE CB HB2 sing N N 281 PHE CB HB3 sing N N 282 PHE CG CD1 doub Y N 283 PHE CG CD2 sing Y N 284 PHE CD1 CE1 sing Y N 285 PHE CD1 HD1 sing N N 286 PHE CD2 CE2 doub Y N 287 PHE CD2 HD2 sing N N 288 PHE CE1 CZ doub Y N 289 PHE CE1 HE1 sing N N 290 PHE CE2 CZ sing Y N 291 PHE CE2 HE2 sing N N 292 PHE CZ HZ sing N N 293 PHE OXT HXT sing N N 294 PRO N CA sing N N 295 PRO N CD sing N N 296 PRO N H sing N N 297 PRO CA C sing N N 298 PRO CA CB sing N N 299 PRO CA HA sing N N 300 PRO C O doub N N 301 PRO C OXT sing N N 302 PRO CB CG sing N N 303 PRO CB HB2 sing N N 304 PRO CB HB3 sing N N 305 PRO CG CD sing N N 306 PRO CG HG2 sing N N 307 PRO CG HG3 sing N N 308 PRO CD HD2 sing N N 309 PRO CD HD3 sing N N 310 PRO OXT HXT sing N N 311 SER N CA sing N N 312 SER N H sing N N 313 SER N H2 sing N N 314 SER CA C sing N N 315 SER CA CB sing N N 316 SER CA HA sing N N 317 SER C O doub N N 318 SER C OXT sing N N 319 SER CB OG sing N N 320 SER CB HB2 sing N N 321 SER CB HB3 sing N N 322 SER OG HG sing N N 323 SER OXT HXT sing N N 324 SO4 S O1 doub N N 325 SO4 S O2 doub N N 326 SO4 S O3 sing N N 327 SO4 S O4 sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R15 AI101977' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BMA 1 B BMA 1 A BMA 1002 n B 2 MAN 2 B MAN 2 A MAN 1001 n B 2 MAN 3 B MAN 3 A MAN 1003 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a1122h-1b_1-5][a1122h-1a_1-5]/1-2-2/a3-b1_a6-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 MAN C1 O1 1 BMA O3 HO3 sing ? 2 2 3 MAN C1 O1 1 BMA O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BMA 1 n 2 MAN 2 n 2 MAN 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1XEZ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Monomer by size exclusion' #