data_5VBS # _entry.id 5VBS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5VBS pdb_00005vbs 10.2210/pdb5vbs/pdb WWPDB D_1000226967 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VBS _pdbx_database_status.recvd_initial_deposition_date 2017-03-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Singh, I.' 1 ? 'Georgiadis, M.M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Synth Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2161-5063 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 2118 _citation.page_last 2129 _citation.title ;Structure and Biophysics for a Six Letter DNA Alphabet that Includes Imidazo[1,2-a]-1,3,5-triazine-2(8H)-4(3H)-dione (X) and 2,4-Diaminopyrimidine (K). ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acssynbio.7b00150 _citation.pdbx_database_id_PubMed 28752992 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Singh, I.' 1 ? primary 'Kim, M.J.' 2 ? primary 'Molt, R.W.' 3 ? primary 'Hoshika, S.' 4 ? primary 'Benner, S.A.' 5 ? primary 'Georgiadis, M.M.' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5VBS _cell.details ? _cell.formula_units_Z ? _cell.length_a 54.999 _cell.length_a_esd ? _cell.length_b 145.643 _cell.length_b_esd ? _cell.length_c 46.876 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'reverse transcriptase catalytic fragment' 29347.754 1 2.7.7.49,2.7.7.7 ? 'unp residues 683-987' ? 2 polymer syn ;DNA (5'-D(*CP*TP*TP*AP*TP*(DX)P*(DX)P*T)-3') ; 2434.584 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*AP*(93D)P*(93D)P*AP*TP*AP*AP*G)-3') ; 2417.662 1 ? ? ? ? 4 water nat water 18.015 188 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Pr180gag-pol # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLL PVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA QICQKQVKYLGYLLKEGQR ; ;GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLL PVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA QICQKQVKYLGYLLKEGQR ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(DT)(DA)(DT)(DX)(DX)(DT)' CTTATXXT B ? 3 polydeoxyribonucleotide no yes '(DA)(93D)(93D)(DA)(DT)(DA)(DA)(DG)' AXXATAAG G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 THR n 1 6 TRP n 1 7 LEU n 1 8 SER n 1 9 ASP n 1 10 PHE n 1 11 PRO n 1 12 GLN n 1 13 ALA n 1 14 TRP n 1 15 ALA n 1 16 GLU n 1 17 THR n 1 18 GLY n 1 19 GLY n 1 20 MET n 1 21 GLY n 1 22 LEU n 1 23 ALA n 1 24 VAL n 1 25 ARG n 1 26 GLN n 1 27 ALA n 1 28 PRO n 1 29 LEU n 1 30 ILE n 1 31 ILE n 1 32 PRO n 1 33 LEU n 1 34 LYS n 1 35 ALA n 1 36 THR n 1 37 SER n 1 38 THR n 1 39 PRO n 1 40 VAL n 1 41 SER n 1 42 ILE n 1 43 LYS n 1 44 GLN n 1 45 TYR n 1 46 PRO n 1 47 MET n 1 48 SER n 1 49 GLN n 1 50 GLU n 1 51 ALA n 1 52 ARG n 1 53 LEU n 1 54 GLY n 1 55 ILE n 1 56 LYS n 1 57 PRO n 1 58 HIS n 1 59 ILE n 1 60 GLN n 1 61 ARG n 1 62 LEU n 1 63 LEU n 1 64 ASP n 1 65 GLN n 1 66 GLY n 1 67 ILE n 1 68 LEU n 1 69 VAL n 1 70 PRO n 1 71 CYS n 1 72 GLN n 1 73 SER n 1 74 PRO n 1 75 TRP n 1 76 ASN n 1 77 THR n 1 78 PRO n 1 79 LEU n 1 80 LEU n 1 81 PRO n 1 82 VAL n 1 83 LYS n 1 84 LYS n 1 85 PRO n 1 86 GLY n 1 87 THR n 1 88 ASN n 1 89 ASP n 1 90 TYR n 1 91 ARG n 1 92 PRO n 1 93 VAL n 1 94 GLN n 1 95 ASP n 1 96 LEU n 1 97 ARG n 1 98 GLU n 1 99 VAL n 1 100 ASN n 1 101 LYS n 1 102 ARG n 1 103 VAL n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 HIS n 1 108 PRO n 1 109 THR n 1 110 VAL n 1 111 PRO n 1 112 ASN n 1 113 PRO n 1 114 TYR n 1 115 ASN n 1 116 LEU n 1 117 LEU n 1 118 SER n 1 119 GLY n 1 120 LEU n 1 121 PRO n 1 122 PRO n 1 123 SER n 1 124 HIS n 1 125 GLN n 1 126 TRP n 1 127 TYR n 1 128 THR n 1 129 VAL n 1 130 LEU n 1 131 ASP n 1 132 LEU n 1 133 LYS n 1 134 ASP n 1 135 ALA n 1 136 PHE n 1 137 PHE n 1 138 CYS n 1 139 LEU n 1 140 ARG n 1 141 LEU n 1 142 HIS n 1 143 PRO n 1 144 THR n 1 145 SER n 1 146 GLN n 1 147 PRO n 1 148 LEU n 1 149 PHE n 1 150 ALA n 1 151 PHE n 1 152 GLU n 1 153 TRP n 1 154 ARG n 1 155 ASP n 1 156 PRO n 1 157 GLU n 1 158 MET n 1 159 GLY n 1 160 ILE n 1 161 SER n 1 162 GLY n 1 163 GLN n 1 164 LEU n 1 165 THR n 1 166 TRP n 1 167 THR n 1 168 ARG n 1 169 LEU n 1 170 PRO n 1 171 GLN n 1 172 GLY n 1 173 PHE n 1 174 LYS n 1 175 ASN n 1 176 SER n 1 177 PRO n 1 178 THR n 1 179 LEU n 1 180 PHE n 1 181 ASP n 1 182 GLU n 1 183 ALA n 1 184 LEU n 1 185 HIS n 1 186 ARG n 1 187 ASP n 1 188 LEU n 1 189 ALA n 1 190 ASP n 1 191 PHE n 1 192 ARG n 1 193 ILE n 1 194 GLN n 1 195 HIS n 1 196 PRO n 1 197 ASP n 1 198 LEU n 1 199 ILE n 1 200 LEU n 1 201 LEU n 1 202 GLN n 1 203 TYR n 1 204 VAL n 1 205 ASP n 1 206 ASP n 1 207 LEU n 1 208 LEU n 1 209 LEU n 1 210 ALA n 1 211 ALA n 1 212 THR n 1 213 SER n 1 214 GLU n 1 215 LEU n 1 216 ASP n 1 217 CYS n 1 218 GLN n 1 219 GLN n 1 220 GLY n 1 221 THR n 1 222 ARG n 1 223 ALA n 1 224 LEU n 1 225 LEU n 1 226 GLN n 1 227 THR n 1 228 LEU n 1 229 GLY n 1 230 ASN n 1 231 LEU n 1 232 GLY n 1 233 TYR n 1 234 ARG n 1 235 ALA n 1 236 SER n 1 237 ALA n 1 238 LYS n 1 239 LYS n 1 240 ALA n 1 241 GLN n 1 242 ILE n 1 243 CYS n 1 244 GLN n 1 245 LYS n 1 246 GLN n 1 247 VAL n 1 248 LYS n 1 249 TYR n 1 250 LEU n 1 251 GLY n 1 252 TYR n 1 253 LEU n 1 254 LEU n 1 255 LYS n 1 256 GLU n 1 257 GLY n 1 258 GLN n 1 259 ARG n 2 1 DC n 2 2 DT n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DX n 2 7 DX n 2 8 DT n 3 1 DA n 3 2 93D n 3 3 93D n 3 4 DA n 3 5 DT n 3 6 DA n 3 7 DA n 3 8 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 259 _entity_src_gen.gene_src_common_name MoMLV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'isolate Shinnick' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Moloney murine leukemia virus (isolate Shinnick)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 928306 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 8 'Escherichia coli' ? 562 ? 3 1 sample 1 8 'Escherichia coli' ? 562 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP POL_MLVMS P03355 ? 1 ;TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ KQVKYLGYLLKEGQR ; 683 2 PDB 5VBS 5VBS ? 2 ? 1 3 PDB 5VBS 5VBS ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5VBS A 5 ? 259 ? P03355 683 ? 937 ? 24 278 2 2 5VBS B 1 ? 8 ? 5VBS 1 ? 8 ? 1 8 3 3 5VBS G 1 ? 8 ? 5VBS 9 ? 16 ? 9 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5VBS GLY A 1 ? UNP P03355 ? ? 'expression tag' 20 1 1 5VBS SER A 2 ? UNP P03355 ? ? 'expression tag' 21 2 1 5VBS HIS A 3 ? UNP P03355 ? ? 'expression tag' 22 3 1 5VBS MET A 4 ? UNP P03355 ? ? 'expression tag' 23 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 93D 'DNA linking' . '(1R)-1,4-anhydro-2-deoxy-1-(2,4-diaminopyrimidin-5-yl)-5-O-phosphono-D-erythro-pentitol' ? 'C9 H15 N4 O6 P' 306.212 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DX 'DNA linking' . '[(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanylidene)imidazo[1,2-a][1,3,5]triazin-8-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate' ? 'C10 H13 N4 O8 P' 348.206 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VBS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10 % PEG 4000, 5 mM magnesium acetate and 50 mM ADA (pH 6.5)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-08-06 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 18.150 _reflns.entry_id 5VBS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.74 _reflns.d_resolution_low 100.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 38374 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.300 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.899 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.042 _reflns.pdbx_Rpim_I_all 0.017 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.750 1.780 ? ? ? ? ? ? ? 92.300 ? ? ? ? 0.299 ? ? ? ? ? ? ? ? 4.400 ? 0.863 ? ? 0.338 0.154 ? 1 1 0.932 ? 1.780 1.810 ? ? ? ? ? ? ? 93.200 ? ? ? ? 0.261 ? ? ? ? ? ? ? ? 4.600 ? 0.836 ? ? 0.293 0.131 ? 2 1 0.947 ? 1.810 1.850 ? ? ? ? ? ? ? 94.700 ? ? ? ? 0.238 ? ? ? ? ? ? ? ? 4.800 ? 0.916 ? ? 0.265 0.117 ? 3 1 0.961 ? 1.850 1.890 ? ? ? ? ? ? ? 95.400 ? ? ? ? 0.207 ? ? ? ? ? ? ? ? 4.900 ? 0.937 ? ? 0.231 0.100 ? 4 1 0.969 ? 1.890 1.930 ? ? ? ? ? ? ? 98.700 ? ? ? ? 0.179 ? ? ? ? ? ? ? ? 5.300 ? 0.974 ? ? 0.199 0.084 ? 5 1 0.976 ? 1.930 1.970 ? ? ? ? ? ? ? 99.700 ? ? ? ? 0.153 ? ? ? ? ? ? ? ? 5.300 ? 1.040 ? ? 0.169 0.071 ? 6 1 0.982 ? 1.970 2.020 ? ? ? ? ? ? ? 99.900 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 5.400 ? 1.069 ? ? 0.132 0.055 ? 7 1 0.989 ? 2.020 2.070 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.103 ? ? ? ? ? ? ? ? 5.400 ? 1.039 ? ? 0.114 0.047 ? 8 1 0.991 ? 2.070 2.140 ? ? ? ? ? ? ? 99.800 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 5.300 ? 1.042 ? ? 0.098 0.041 ? 9 1 0.993 ? 2.140 2.200 ? ? ? ? ? ? ? 99.900 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 5.400 ? 0.995 ? ? 0.087 0.036 ? 10 1 0.995 ? 2.200 2.280 ? ? ? ? ? ? ? 99.900 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 5.400 ? 0.983 ? ? 0.076 0.031 ? 11 1 0.995 ? 2.280 2.380 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.057 ? ? ? ? ? ? ? ? 5.400 ? 0.948 ? ? 0.063 0.026 ? 12 1 0.997 ? 2.380 2.480 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 5.400 ? 0.895 ? ? 0.053 0.022 ? 13 1 0.997 ? 2.480 2.610 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 5.500 ? 0.848 ? ? 0.047 0.019 ? 14 1 0.998 ? 2.610 2.780 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 5.500 ? 0.811 ? ? 0.041 0.017 ? 15 1 0.998 ? 2.780 2.990 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? 5.600 ? 0.770 ? ? 0.034 0.014 ? 16 1 0.999 ? 2.990 3.290 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? 5.600 ? 0.685 ? ? 0.028 0.011 ? 17 1 0.999 ? 3.290 3.770 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.022 ? ? ? ? ? ? ? ? 5.600 ? 0.660 ? ? 0.024 0.010 ? 18 1 0.999 ? 3.770 4.750 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.020 ? ? ? ? ? ? ? ? 5.500 ? 0.627 ? ? 0.022 0.009 ? 19 1 0.999 ? 4.750 100.000 ? ? ? ? ? ? ? 95.300 ? ? ? ? 0.027 ? ? ? ? ? ? ? ? 5.000 ? 1.116 ? ? 0.030 0.013 ? 20 1 0.998 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 80.570 _refine.B_iso_mean 27.3772 _refine.B_iso_min 8.750 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5VBS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7490 _refine.ls_d_res_low 33.7220 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 38305 _refine.ls_number_reflns_R_free 1842 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.3300 _refine.ls_percent_reflns_R_free 4.8100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2100 _refine.ls_R_factor_R_free 0.2385 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2086 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1XO0 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.2000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7490 _refine_hist.d_res_low 33.7220 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 188 _refine_hist.number_atoms_total 2480 _refine_hist.pdbx_number_residues_total 262 _refine_hist.pdbx_B_iso_mean_solvent 25.19 _refine_hist.pdbx_number_atoms_protein 1968 _refine_hist.pdbx_number_atoms_nucleic_acid 324 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 2383 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.114 ? 3311 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.051 ? 365 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 373 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 18.225 ? 889 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7489 1.7962 2667 . 120 2547 91.0000 . . . 0.2511 0.0000 0.2108 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 1.7962 1.8490 2776 . 121 2655 94.0000 . . . 0.2568 0.0000 0.2190 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 1.8490 1.9087 2855 . 132 2723 97.0000 . . . 0.2769 0.0000 0.2261 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 1.9087 1.9769 2939 . 140 2799 100.0000 . . . 0.2538 0.0000 0.2129 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 1.9769 2.0561 2966 . 150 2816 100.0000 . . . 0.2297 0.0000 0.2058 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 2.0561 2.1496 2942 . 128 2814 100.0000 . . . 0.2277 0.0000 0.2082 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 2.1496 2.2629 2974 . 138 2836 100.0000 . . . 0.2405 0.0000 0.2145 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 2.2629 2.4047 2976 . 132 2844 100.0000 . . . 0.2384 0.0000 0.2087 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 2.4047 2.5903 3011 . 166 2845 100.0000 . . . 0.2408 0.0000 0.2178 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 2.5903 2.8508 2987 . 161 2826 100.0000 . . . 0.2386 0.0000 0.2250 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 2.8508 3.2631 3020 . 133 2887 100.0000 . . . 0.2639 0.0000 0.2178 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 3.2631 4.1100 3057 . 165 2892 100.0000 . . . 0.2207 0.0000 0.2026 . . . . . . 13 . . . 'X-RAY DIFFRACTION' 4.1100 33.7281 3135 . 156 2979 97.0000 . . . 0.2312 0.0000 0.1891 . . . . . . 13 . . . # _struct.entry_id 5VBS _struct.title 'Structural basis for a six letter alphabet including GATCKX' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VBS _struct_keywords.text 'Protein-DNA, AEGIS, unnatural base pair, host-guest system, transferase-dna complex' _struct_keywords.pdbx_keywords transferase/dna # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 5 ? PHE A 10 ? THR A 24 PHE A 29 1 ? 6 HELX_P HELX_P2 AA2 TRP A 14 ? GLY A 19 ? TRP A 33 GLY A 38 1 ? 6 HELX_P HELX_P3 AA3 SER A 48 ? GLN A 65 ? SER A 67 GLN A 84 1 ? 18 HELX_P HELX_P4 AA4 LEU A 96 ? LYS A 101 ? LEU A 115 LYS A 120 1 ? 6 HELX_P HELX_P5 AA5 ASN A 112 ? SER A 118 ? ASN A 131 SER A 137 1 ? 7 HELX_P HELX_P6 AA6 ALA A 135 ? LEU A 139 ? ALA A 154 LEU A 158 5 ? 5 HELX_P HELX_P7 AA7 SER A 145 ? ALA A 150 ? SER A 164 ALA A 169 5 ? 6 HELX_P HELX_P8 AA8 ASN A 175 ? HIS A 195 ? ASN A 194 HIS A 214 1 ? 21 HELX_P HELX_P9 AA9 SER A 213 ? GLY A 232 ? SER A 232 GLY A 251 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 5 "O3'" ? ? ? 1_555 B DX 6 P ? ? B DT 5 B DX 6 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale2 covale one ? B DX 6 "O3'" ? ? ? 1_555 B DX 7 P ? ? B DX 6 B DX 7 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale3 covale one ? B DX 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B DX 7 B DT 8 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale4 covale both ? C DA 1 "O3'" ? ? ? 1_555 C 93D 2 P ? ? G DA 9 G 93D 10 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale5 covale one ? C 93D 2 "O3'" ? ? ? 1_555 C 93D 3 P ? ? G 93D 10 G 93D 11 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale6 covale one ? C 93D 3 "O3'" ? ? ? 1_555 C DA 4 P ? ? G 93D 11 G DA 12 1_555 ? ? ? ? ? ? ? 1.591 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 1 G DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 1 G DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 1 G DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 2 G DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 2 G DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 3 G DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 3 G DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 4 G DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 4 G DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 5 G DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 5 G DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 1 N1 ? ? B DT 8 G DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 1 N6 ? ? B DT 8 G DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 68 ? CYS A 71 ? LEU A 87 CYS A 90 AA1 2 GLY A 162 ? TRP A 166 ? GLY A 181 TRP A 185 AA1 3 PHE A 151 ? TRP A 153 ? PHE A 170 TRP A 172 AA2 1 ILE A 199 ? TYR A 203 ? ILE A 218 TYR A 222 AA2 2 ASP A 206 ? ALA A 211 ? ASP A 225 ALA A 230 AA2 3 TRP A 126 ? ASP A 131 ? TRP A 145 ASP A 150 AA2 4 GLN A 241 ? GLN A 244 ? GLN A 260 GLN A 263 AA3 1 GLN A 246 ? TYR A 249 ? GLN A 265 TYR A 268 AA3 2 TYR A 252 ? LYS A 255 ? TYR A 271 LYS A 274 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 69 ? N VAL A 88 O THR A 165 ? O THR A 184 AA1 2 3 O GLY A 162 ? O GLY A 181 N TRP A 153 ? N TRP A 172 AA2 1 2 N LEU A 201 ? N LEU A 220 O LEU A 208 ? O LEU A 227 AA2 2 3 O LEU A 209 ? O LEU A 228 N THR A 128 ? N THR A 147 AA2 3 4 N TYR A 127 ? N TYR A 146 O GLN A 244 ? O GLN A 263 AA3 1 2 N VAL A 247 ? N VAL A 266 O LEU A 254 ? O LEU A 273 # _atom_sites.entry_id 5VBS _atom_sites.fract_transf_matrix[1][1] 0.018182 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006866 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021333 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 20 ? ? ? A . n A 1 2 SER 2 21 ? ? ? A . n A 1 3 HIS 3 22 ? ? ? A . n A 1 4 MET 4 23 ? ? ? A . n A 1 5 THR 5 24 24 THR THR A . n A 1 6 TRP 6 25 25 TRP TRP A . n A 1 7 LEU 7 26 26 LEU LEU A . n A 1 8 SER 8 27 27 SER SER A . n A 1 9 ASP 9 28 28 ASP ASP A . n A 1 10 PHE 10 29 29 PHE PHE A . n A 1 11 PRO 11 30 30 PRO PRO A . n A 1 12 GLN 12 31 31 GLN GLN A . n A 1 13 ALA 13 32 32 ALA ALA A . n A 1 14 TRP 14 33 33 TRP TRP A . n A 1 15 ALA 15 34 34 ALA ALA A . n A 1 16 GLU 16 35 35 GLU GLU A . n A 1 17 THR 17 36 36 THR THR A . n A 1 18 GLY 18 37 37 GLY GLY A . n A 1 19 GLY 19 38 38 GLY GLY A . n A 1 20 MET 20 39 39 MET MET A . n A 1 21 GLY 21 40 40 GLY GLY A . n A 1 22 LEU 22 41 41 LEU LEU A . n A 1 23 ALA 23 42 42 ALA ALA A . n A 1 24 VAL 24 43 43 VAL VAL A . n A 1 25 ARG 25 44 44 ARG ARG A . n A 1 26 GLN 26 45 45 GLN GLN A . n A 1 27 ALA 27 46 46 ALA ALA A . n A 1 28 PRO 28 47 47 PRO PRO A . n A 1 29 LEU 29 48 48 LEU LEU A . n A 1 30 ILE 30 49 49 ILE ILE A . n A 1 31 ILE 31 50 50 ILE ILE A . n A 1 32 PRO 32 51 51 PRO PRO A . n A 1 33 LEU 33 52 52 LEU LEU A . n A 1 34 LYS 34 53 53 LYS LYS A . n A 1 35 ALA 35 54 54 ALA ALA A . n A 1 36 THR 36 55 55 THR THR A . n A 1 37 SER 37 56 56 SER SER A . n A 1 38 THR 38 57 57 THR THR A . n A 1 39 PRO 39 58 58 PRO PRO A . n A 1 40 VAL 40 59 59 VAL VAL A . n A 1 41 SER 41 60 60 SER SER A . n A 1 42 ILE 42 61 61 ILE ILE A . n A 1 43 LYS 43 62 62 LYS LYS A . n A 1 44 GLN 44 63 63 GLN GLN A . n A 1 45 TYR 45 64 64 TYR TYR A . n A 1 46 PRO 46 65 65 PRO PRO A . n A 1 47 MET 47 66 66 MET MET A . n A 1 48 SER 48 67 67 SER SER A . n A 1 49 GLN 49 68 68 GLN GLN A . n A 1 50 GLU 50 69 69 GLU GLU A . n A 1 51 ALA 51 70 70 ALA ALA A . n A 1 52 ARG 52 71 71 ARG ARG A . n A 1 53 LEU 53 72 72 LEU LEU A . n A 1 54 GLY 54 73 73 GLY GLY A . n A 1 55 ILE 55 74 74 ILE ILE A . n A 1 56 LYS 56 75 75 LYS LYS A . n A 1 57 PRO 57 76 76 PRO PRO A . n A 1 58 HIS 58 77 77 HIS HIS A . n A 1 59 ILE 59 78 78 ILE ILE A . n A 1 60 GLN 60 79 79 GLN GLN A . n A 1 61 ARG 61 80 80 ARG ARG A . n A 1 62 LEU 62 81 81 LEU LEU A . n A 1 63 LEU 63 82 82 LEU LEU A . n A 1 64 ASP 64 83 83 ASP ASP A . n A 1 65 GLN 65 84 84 GLN GLN A . n A 1 66 GLY 66 85 85 GLY GLY A . n A 1 67 ILE 67 86 86 ILE ILE A . n A 1 68 LEU 68 87 87 LEU LEU A . n A 1 69 VAL 69 88 88 VAL VAL A . n A 1 70 PRO 70 89 89 PRO PRO A . n A 1 71 CYS 71 90 90 CYS CYS A . n A 1 72 GLN 72 91 91 GLN GLN A . n A 1 73 SER 73 92 92 SER SER A . n A 1 74 PRO 74 93 93 PRO PRO A . n A 1 75 TRP 75 94 94 TRP TRP A . n A 1 76 ASN 76 95 95 ASN ASN A . n A 1 77 THR 77 96 96 THR THR A . n A 1 78 PRO 78 97 97 PRO PRO A . n A 1 79 LEU 79 98 98 LEU LEU A . n A 1 80 LEU 80 99 99 LEU LEU A . n A 1 81 PRO 81 100 100 PRO PRO A . n A 1 82 VAL 82 101 101 VAL VAL A . n A 1 83 LYS 83 102 102 LYS LYS A . n A 1 84 LYS 84 103 ? ? ? A . n A 1 85 PRO 85 104 ? ? ? A . n A 1 86 GLY 86 105 ? ? ? A . n A 1 87 THR 87 106 ? ? ? A . n A 1 88 ASN 88 107 ? ? ? A . n A 1 89 ASP 89 108 108 ASP ASP A . n A 1 90 TYR 90 109 109 TYR TYR A . n A 1 91 ARG 91 110 110 ARG ARG A . n A 1 92 PRO 92 111 111 PRO PRO A . n A 1 93 VAL 93 112 112 VAL VAL A . n A 1 94 GLN 94 113 113 GLN GLN A . n A 1 95 ASP 95 114 114 ASP ASP A . n A 1 96 LEU 96 115 115 LEU LEU A . n A 1 97 ARG 97 116 116 ARG ARG A . n A 1 98 GLU 98 117 117 GLU GLU A . n A 1 99 VAL 99 118 118 VAL VAL A . n A 1 100 ASN 100 119 119 ASN ASN A . n A 1 101 LYS 101 120 120 LYS LYS A . n A 1 102 ARG 102 121 121 ARG ARG A . n A 1 103 VAL 103 122 122 VAL VAL A . n A 1 104 GLU 104 123 123 GLU GLU A . n A 1 105 ASP 105 124 124 ASP ASP A . n A 1 106 ILE 106 125 125 ILE ILE A . n A 1 107 HIS 107 126 126 HIS HIS A . n A 1 108 PRO 108 127 127 PRO PRO A . n A 1 109 THR 109 128 128 THR THR A . n A 1 110 VAL 110 129 129 VAL VAL A . n A 1 111 PRO 111 130 130 PRO PRO A . n A 1 112 ASN 112 131 131 ASN ASN A . n A 1 113 PRO 113 132 132 PRO PRO A . n A 1 114 TYR 114 133 133 TYR TYR A . n A 1 115 ASN 115 134 134 ASN ASN A . n A 1 116 LEU 116 135 135 LEU LEU A . n A 1 117 LEU 117 136 136 LEU LEU A . n A 1 118 SER 118 137 137 SER SER A . n A 1 119 GLY 119 138 138 GLY GLY A . n A 1 120 LEU 120 139 139 LEU LEU A . n A 1 121 PRO 121 140 140 PRO PRO A . n A 1 122 PRO 122 141 141 PRO PRO A . n A 1 123 SER 123 142 142 SER SER A . n A 1 124 HIS 124 143 143 HIS HIS A . n A 1 125 GLN 125 144 144 GLN GLN A . n A 1 126 TRP 126 145 145 TRP TRP A . n A 1 127 TYR 127 146 146 TYR TYR A . n A 1 128 THR 128 147 147 THR THR A . n A 1 129 VAL 129 148 148 VAL VAL A . n A 1 130 LEU 130 149 149 LEU LEU A . n A 1 131 ASP 131 150 150 ASP ASP A . n A 1 132 LEU 132 151 151 LEU LEU A . n A 1 133 LYS 133 152 152 LYS LYS A . n A 1 134 ASP 134 153 153 ASP ASP A . n A 1 135 ALA 135 154 154 ALA ALA A . n A 1 136 PHE 136 155 155 PHE PHE A . n A 1 137 PHE 137 156 156 PHE PHE A . n A 1 138 CYS 138 157 157 CYS CYS A . n A 1 139 LEU 139 158 158 LEU LEU A . n A 1 140 ARG 140 159 159 ARG ARG A . n A 1 141 LEU 141 160 160 LEU LEU A . n A 1 142 HIS 142 161 161 HIS HIS A . n A 1 143 PRO 143 162 162 PRO PRO A . n A 1 144 THR 144 163 163 THR THR A . n A 1 145 SER 145 164 164 SER SER A . n A 1 146 GLN 146 165 165 GLN GLN A . n A 1 147 PRO 147 166 166 PRO PRO A . n A 1 148 LEU 148 167 167 LEU LEU A . n A 1 149 PHE 149 168 168 PHE PHE A . n A 1 150 ALA 150 169 169 ALA ALA A . n A 1 151 PHE 151 170 170 PHE PHE A . n A 1 152 GLU 152 171 171 GLU GLU A . n A 1 153 TRP 153 172 172 TRP TRP A . n A 1 154 ARG 154 173 173 ARG ARG A . n A 1 155 ASP 155 174 174 ASP ASP A . n A 1 156 PRO 156 175 175 PRO PRO A . n A 1 157 GLU 157 176 ? ? ? A . n A 1 158 MET 158 177 ? ? ? A . n A 1 159 GLY 159 178 ? ? ? A . n A 1 160 ILE 160 179 ? ? ? A . n A 1 161 SER 161 180 180 SER SER A . n A 1 162 GLY 162 181 181 GLY GLY A . n A 1 163 GLN 163 182 182 GLN GLN A . n A 1 164 LEU 164 183 183 LEU LEU A . n A 1 165 THR 165 184 184 THR THR A . n A 1 166 TRP 166 185 185 TRP TRP A . n A 1 167 THR 167 186 186 THR THR A . n A 1 168 ARG 168 187 187 ARG ARG A . n A 1 169 LEU 169 188 188 LEU LEU A . n A 1 170 PRO 170 189 189 PRO PRO A . n A 1 171 GLN 171 190 190 GLN GLN A . n A 1 172 GLY 172 191 191 GLY GLY A . n A 1 173 PHE 173 192 192 PHE PHE A . n A 1 174 LYS 174 193 193 LYS LYS A . n A 1 175 ASN 175 194 194 ASN ASN A . n A 1 176 SER 176 195 195 SER SER A . n A 1 177 PRO 177 196 196 PRO PRO A . n A 1 178 THR 178 197 197 THR THR A . n A 1 179 LEU 179 198 198 LEU LEU A . n A 1 180 PHE 180 199 199 PHE PHE A . n A 1 181 ASP 181 200 200 ASP ASP A . n A 1 182 GLU 182 201 201 GLU GLU A . n A 1 183 ALA 183 202 202 ALA ALA A . n A 1 184 LEU 184 203 203 LEU LEU A . n A 1 185 HIS 185 204 204 HIS HIS A . n A 1 186 ARG 186 205 205 ARG ARG A . n A 1 187 ASP 187 206 206 ASP ASP A . n A 1 188 LEU 188 207 207 LEU LEU A . n A 1 189 ALA 189 208 208 ALA ALA A . n A 1 190 ASP 190 209 209 ASP ASP A . n A 1 191 PHE 191 210 210 PHE PHE A . n A 1 192 ARG 192 211 211 ARG ARG A . n A 1 193 ILE 193 212 212 ILE ILE A . n A 1 194 GLN 194 213 213 GLN GLN A . n A 1 195 HIS 195 214 214 HIS HIS A . n A 1 196 PRO 196 215 215 PRO PRO A . n A 1 197 ASP 197 216 216 ASP ASP A . n A 1 198 LEU 198 217 217 LEU LEU A . n A 1 199 ILE 199 218 218 ILE ILE A . n A 1 200 LEU 200 219 219 LEU LEU A . n A 1 201 LEU 201 220 220 LEU LEU A . n A 1 202 GLN 202 221 221 GLN GLN A . n A 1 203 TYR 203 222 222 TYR TYR A . n A 1 204 VAL 204 223 223 VAL VAL A . n A 1 205 ASP 205 224 224 ASP ASP A . n A 1 206 ASP 206 225 225 ASP ASP A . n A 1 207 LEU 207 226 226 LEU LEU A . n A 1 208 LEU 208 227 227 LEU LEU A . n A 1 209 LEU 209 228 228 LEU LEU A . n A 1 210 ALA 210 229 229 ALA ALA A . n A 1 211 ALA 211 230 230 ALA ALA A . n A 1 212 THR 212 231 231 THR THR A . n A 1 213 SER 213 232 232 SER SER A . n A 1 214 GLU 214 233 233 GLU GLU A . n A 1 215 LEU 215 234 234 LEU LEU A . n A 1 216 ASP 216 235 235 ASP ASP A . n A 1 217 CYS 217 236 236 CYS CYS A . n A 1 218 GLN 218 237 237 GLN GLN A . n A 1 219 GLN 219 238 238 GLN GLN A . n A 1 220 GLY 220 239 239 GLY GLY A . n A 1 221 THR 221 240 240 THR THR A . n A 1 222 ARG 222 241 241 ARG ARG A . n A 1 223 ALA 223 242 242 ALA ALA A . n A 1 224 LEU 224 243 243 LEU LEU A . n A 1 225 LEU 225 244 244 LEU LEU A . n A 1 226 GLN 226 245 245 GLN GLN A . n A 1 227 THR 227 246 246 THR THR A . n A 1 228 LEU 228 247 247 LEU LEU A . n A 1 229 GLY 229 248 248 GLY GLY A . n A 1 230 ASN 230 249 249 ASN ASN A . n A 1 231 LEU 231 250 250 LEU LEU A . n A 1 232 GLY 232 251 251 GLY GLY A . n A 1 233 TYR 233 252 252 TYR TYR A . n A 1 234 ARG 234 253 253 ARG ARG A . n A 1 235 ALA 235 254 254 ALA ALA A . n A 1 236 SER 236 255 255 SER SER A . n A 1 237 ALA 237 256 256 ALA ALA A . n A 1 238 LYS 238 257 257 LYS LYS A . n A 1 239 LYS 239 258 258 LYS LYS A . n A 1 240 ALA 240 259 259 ALA ALA A . n A 1 241 GLN 241 260 260 GLN GLN A . n A 1 242 ILE 242 261 261 ILE ILE A . n A 1 243 CYS 243 262 262 CYS CYS A . n A 1 244 GLN 244 263 263 GLN GLN A . n A 1 245 LYS 245 264 264 LYS LYS A . n A 1 246 GLN 246 265 265 GLN GLN A . n A 1 247 VAL 247 266 266 VAL VAL A . n A 1 248 LYS 248 267 267 LYS LYS A . n A 1 249 TYR 249 268 268 TYR TYR A . n A 1 250 LEU 250 269 269 LEU LEU A . n A 1 251 GLY 251 270 270 GLY GLY A . n A 1 252 TYR 252 271 271 TYR TYR A . n A 1 253 LEU 253 272 272 LEU LEU A . n A 1 254 LEU 254 273 273 LEU LEU A . n A 1 255 LYS 255 274 274 LYS LYS A . n A 1 256 GLU 256 275 275 GLU GLU A . n A 1 257 GLY 257 276 276 GLY GLY A . n A 1 258 GLN 258 277 277 GLN GLN A . n A 1 259 ARG 259 278 278 ARG ARG A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DX 6 6 6 DX DX B . n B 2 7 DX 7 7 7 DX DX B . n B 2 8 DT 8 8 8 DT DT B . n C 3 1 DA 1 9 9 DA DA G . n C 3 2 93D 2 10 10 93D DK G . n C 3 3 93D 3 11 11 93D DK G . n C 3 4 DA 4 12 12 DA DA G . n C 3 5 DT 5 13 13 DT DT G . n C 3 6 DA 6 14 14 DA DA G . n C 3 7 DA 7 15 15 DA DA G . n C 3 8 DG 8 16 16 DG DG G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 301 183 HOH HOH A . D 4 HOH 2 302 199 HOH HOH A . D 4 HOH 3 303 191 HOH HOH A . D 4 HOH 4 304 212 HOH HOH A . D 4 HOH 5 305 180 HOH HOH A . D 4 HOH 6 306 153 HOH HOH A . D 4 HOH 7 307 179 HOH HOH A . D 4 HOH 8 308 109 HOH HOH A . D 4 HOH 9 309 58 HOH HOH A . D 4 HOH 10 310 83 HOH HOH A . D 4 HOH 11 311 69 HOH HOH A . D 4 HOH 12 312 40 HOH HOH A . D 4 HOH 13 313 184 HOH HOH A . D 4 HOH 14 314 30 HOH HOH A . D 4 HOH 15 315 196 HOH HOH A . D 4 HOH 16 316 47 HOH HOH A . D 4 HOH 17 317 87 HOH HOH A . D 4 HOH 18 318 5 HOH HOH A . D 4 HOH 19 319 19 HOH HOH A . D 4 HOH 20 320 114 HOH HOH A . D 4 HOH 21 321 99 HOH HOH A . D 4 HOH 22 322 148 HOH HOH A . D 4 HOH 23 323 74 HOH HOH A . D 4 HOH 24 324 12 HOH HOH A . D 4 HOH 25 325 49 HOH HOH A . D 4 HOH 26 326 111 HOH HOH A . D 4 HOH 27 327 207 HOH HOH A . D 4 HOH 28 328 75 HOH HOH A . D 4 HOH 29 329 9 HOH HOH A . D 4 HOH 30 330 31 HOH HOH A . D 4 HOH 31 331 46 HOH HOH A . D 4 HOH 32 332 67 HOH HOH A . D 4 HOH 33 333 10 HOH HOH A . D 4 HOH 34 334 164 HOH HOH A . D 4 HOH 35 335 68 HOH HOH A . D 4 HOH 36 336 53 HOH HOH A . D 4 HOH 37 337 43 HOH HOH A . D 4 HOH 38 338 90 HOH HOH A . D 4 HOH 39 339 94 HOH HOH A . D 4 HOH 40 340 66 HOH HOH A . D 4 HOH 41 341 3 HOH HOH A . D 4 HOH 42 342 77 HOH HOH A . D 4 HOH 43 343 198 HOH HOH A . D 4 HOH 44 344 57 HOH HOH A . D 4 HOH 45 345 28 HOH HOH A . D 4 HOH 46 346 201 HOH HOH A . D 4 HOH 47 347 166 HOH HOH A . D 4 HOH 48 348 23 HOH HOH A . D 4 HOH 49 349 155 HOH HOH A . D 4 HOH 50 350 41 HOH HOH A . D 4 HOH 51 351 20 HOH HOH A . D 4 HOH 52 352 16 HOH HOH A . D 4 HOH 53 353 71 HOH HOH A . D 4 HOH 54 354 15 HOH HOH A . D 4 HOH 55 355 96 HOH HOH A . D 4 HOH 56 356 152 HOH HOH A . D 4 HOH 57 357 211 HOH HOH A . D 4 HOH 58 358 55 HOH HOH A . D 4 HOH 59 359 192 HOH HOH A . D 4 HOH 60 360 7 HOH HOH A . D 4 HOH 61 361 162 HOH HOH A . D 4 HOH 62 362 1 HOH HOH A . D 4 HOH 63 363 91 HOH HOH A . D 4 HOH 64 364 26 HOH HOH A . D 4 HOH 65 365 204 HOH HOH A . D 4 HOH 66 366 50 HOH HOH A . D 4 HOH 67 367 88 HOH HOH A . D 4 HOH 68 368 34 HOH HOH A . D 4 HOH 69 369 45 HOH HOH A . D 4 HOH 70 370 108 HOH HOH A . D 4 HOH 71 371 21 HOH HOH A . D 4 HOH 72 372 122 HOH HOH A . D 4 HOH 73 373 29 HOH HOH A . D 4 HOH 74 374 97 HOH HOH A . D 4 HOH 75 375 61 HOH HOH A . D 4 HOH 76 376 98 HOH HOH A . D 4 HOH 77 377 24 HOH HOH A . D 4 HOH 78 378 2 HOH HOH A . D 4 HOH 79 379 35 HOH HOH A . D 4 HOH 80 380 93 HOH HOH A . D 4 HOH 81 381 39 HOH HOH A . D 4 HOH 82 382 194 HOH HOH A . D 4 HOH 83 383 42 HOH HOH A . D 4 HOH 84 384 32 HOH HOH A . D 4 HOH 85 385 79 HOH HOH A . D 4 HOH 86 386 188 HOH HOH A . D 4 HOH 87 387 100 HOH HOH A . D 4 HOH 88 388 44 HOH HOH A . D 4 HOH 89 389 154 HOH HOH A . D 4 HOH 90 390 92 HOH HOH A . D 4 HOH 91 391 64 HOH HOH A . D 4 HOH 92 392 52 HOH HOH A . D 4 HOH 93 393 119 HOH HOH A . D 4 HOH 94 394 70 HOH HOH A . D 4 HOH 95 395 36 HOH HOH A . D 4 HOH 96 396 78 HOH HOH A . D 4 HOH 97 397 11 HOH HOH A . D 4 HOH 98 398 14 HOH HOH A . D 4 HOH 99 399 141 HOH HOH A . D 4 HOH 100 400 193 HOH HOH A . D 4 HOH 101 401 22 HOH HOH A . D 4 HOH 102 402 95 HOH HOH A . D 4 HOH 103 403 8 HOH HOH A . D 4 HOH 104 404 37 HOH HOH A . D 4 HOH 105 405 13 HOH HOH A . D 4 HOH 106 406 4 HOH HOH A . D 4 HOH 107 407 102 HOH HOH A . D 4 HOH 108 408 17 HOH HOH A . D 4 HOH 109 409 167 HOH HOH A . D 4 HOH 110 410 175 HOH HOH A . D 4 HOH 111 411 101 HOH HOH A . D 4 HOH 112 412 59 HOH HOH A . D 4 HOH 113 413 187 HOH HOH A . D 4 HOH 114 414 205 HOH HOH A . D 4 HOH 115 415 6 HOH HOH A . D 4 HOH 116 416 202 HOH HOH A . D 4 HOH 117 417 81 HOH HOH A . D 4 HOH 118 418 115 HOH HOH A . D 4 HOH 119 419 60 HOH HOH A . D 4 HOH 120 420 76 HOH HOH A . D 4 HOH 121 421 113 HOH HOH A . D 4 HOH 122 422 143 HOH HOH A . D 4 HOH 123 423 25 HOH HOH A . D 4 HOH 124 424 177 HOH HOH A . D 4 HOH 125 425 200 HOH HOH A . D 4 HOH 126 426 82 HOH HOH A . D 4 HOH 127 427 80 HOH HOH A . D 4 HOH 128 428 209 HOH HOH A . D 4 HOH 129 429 27 HOH HOH A . D 4 HOH 130 430 65 HOH HOH A . D 4 HOH 131 431 116 HOH HOH A . D 4 HOH 132 432 54 HOH HOH A . D 4 HOH 133 433 171 HOH HOH A . D 4 HOH 134 434 149 HOH HOH A . D 4 HOH 135 435 185 HOH HOH A . D 4 HOH 136 436 147 HOH HOH A . D 4 HOH 137 437 106 HOH HOH A . D 4 HOH 138 438 176 HOH HOH A . D 4 HOH 139 439 181 HOH HOH A . D 4 HOH 140 440 33 HOH HOH A . D 4 HOH 141 441 173 HOH HOH A . D 4 HOH 142 442 165 HOH HOH A . D 4 HOH 143 443 146 HOH HOH A . D 4 HOH 144 444 150 HOH HOH A . D 4 HOH 145 445 156 HOH HOH A . D 4 HOH 146 446 133 HOH HOH A . D 4 HOH 147 447 208 HOH HOH A . D 4 HOH 148 448 169 HOH HOH A . D 4 HOH 149 449 190 HOH HOH A . D 4 HOH 150 450 197 HOH HOH A . D 4 HOH 151 451 138 HOH HOH A . D 4 HOH 152 452 163 HOH HOH A . D 4 HOH 153 453 63 HOH HOH A . D 4 HOH 154 454 120 HOH HOH A . D 4 HOH 155 455 170 HOH HOH A . D 4 HOH 156 456 117 HOH HOH A . D 4 HOH 157 457 157 HOH HOH A . D 4 HOH 158 458 84 HOH HOH A . D 4 HOH 159 459 56 HOH HOH A . D 4 HOH 160 460 126 HOH HOH A . D 4 HOH 161 461 134 HOH HOH A . D 4 HOH 162 462 48 HOH HOH A . D 4 HOH 163 463 129 HOH HOH A . D 4 HOH 164 464 123 HOH HOH A . D 4 HOH 165 465 38 HOH HOH A . D 4 HOH 166 466 105 HOH HOH A . D 4 HOH 167 467 130 HOH HOH A . D 4 HOH 168 468 73 HOH HOH A . D 4 HOH 169 469 62 HOH HOH A . D 4 HOH 170 470 103 HOH HOH A . D 4 HOH 171 471 195 HOH HOH A . D 4 HOH 172 472 128 HOH HOH A . D 4 HOH 173 473 127 HOH HOH A . D 4 HOH 174 474 86 HOH HOH A . D 4 HOH 175 475 140 HOH HOH A . D 4 HOH 176 476 172 HOH HOH A . D 4 HOH 177 477 18 HOH HOH A . D 4 HOH 178 478 132 HOH HOH A . D 4 HOH 179 479 131 HOH HOH A . D 4 HOH 180 480 139 HOH HOH A . E 4 HOH 1 101 182 HOH HOH B . E 4 HOH 2 102 136 HOH HOH B . E 4 HOH 3 103 135 HOH HOH B . E 4 HOH 4 104 89 HOH HOH B . F 4 HOH 1 101 142 HOH HOH G . F 4 HOH 2 102 145 HOH HOH G . F 4 HOH 3 103 144 HOH HOH G . F 4 HOH 4 104 85 HOH HOH G . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1600 ? 1 MORE 1 ? 1 'SSA (A^2)' 15080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 389 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-07 2 'Structure model' 1 1 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 6 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 7 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 8 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 9 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 10 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL ? ? ? . 11 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL ? ? ? . 12 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 318 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 455 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 41 ? ? -167.63 117.14 2 1 VAL A 223 ? ? 52.00 -104.32 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 480 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.99 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 102 ? CD ? A LYS 83 CD 2 1 Y 1 A LYS 102 ? CE ? A LYS 83 CE 3 1 Y 1 A LYS 102 ? NZ ? A LYS 83 NZ 4 1 Y 1 A ARG 110 ? CG ? A ARG 91 CG 5 1 Y 1 A ARG 110 ? CD ? A ARG 91 CD 6 1 Y 1 A ARG 110 ? NE ? A ARG 91 NE 7 1 Y 1 A ARG 110 ? CZ ? A ARG 91 CZ 8 1 Y 1 A ARG 110 ? NH1 ? A ARG 91 NH1 9 1 Y 1 A ARG 110 ? NH2 ? A ARG 91 NH2 10 1 Y 1 B DT 8 ? C7 ? B DT 8 C7 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 20 ? A GLY 1 2 1 Y 1 A SER 21 ? A SER 2 3 1 Y 1 A HIS 22 ? A HIS 3 4 1 Y 1 A MET 23 ? A MET 4 5 1 Y 1 A LYS 103 ? A LYS 84 6 1 Y 1 A PRO 104 ? A PRO 85 7 1 Y 1 A GLY 105 ? A GLY 86 8 1 Y 1 A THR 106 ? A THR 87 9 1 Y 1 A ASN 107 ? A ASN 88 10 1 Y 1 A GLU 176 ? A GLU 157 11 1 Y 1 A MET 177 ? A MET 158 12 1 Y 1 A GLY 178 ? A GLY 159 13 1 Y 1 A ILE 179 ? A ILE 160 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 93D P P N N 1 93D OP2 O N N 2 93D "O5'" O N N 3 93D "C5'" C N N 4 93D "C4'" C N R 5 93D "C3'" C N S 6 93D "O3'" O N N 7 93D "C2'" C N N 8 93D "C1'" C N R 9 93D "O4'" O N N 10 93D C1 C Y N 11 93D C6 C Y N 12 93D N5 N Y N 13 93D C4 C Y N 14 93D N3 N Y N 15 93D C2 C Y N 16 93D N2 N N N 17 93D N4 N N N 18 93D OP3 O N N 19 93D HOP2 H N N 20 93D H2 H N N 21 93D H3 H N N 22 93D H4 H N N 23 93D H5 H N N 24 93D H6 H N N 25 93D H7 H N N 26 93D H8 H N N 27 93D H9 H N N 28 93D H10 H N N 29 93D H11 H N N 30 93D H12 H N N 31 93D H13 H N N 32 93D H14 H N N 33 93D HOP3 H N N 34 93D OP1 O N N 35 ALA N N N N 36 ALA CA C N S 37 ALA C C N N 38 ALA O O N N 39 ALA CB C N N 40 ALA OXT O N N 41 ALA H H N N 42 ALA H2 H N N 43 ALA HA H N N 44 ALA HB1 H N N 45 ALA HB2 H N N 46 ALA HB3 H N N 47 ALA HXT H N N 48 ARG N N N N 49 ARG CA C N S 50 ARG C C N N 51 ARG O O N N 52 ARG CB C N N 53 ARG CG C N N 54 ARG CD C N N 55 ARG NE N N N 56 ARG CZ C N N 57 ARG NH1 N N N 58 ARG NH2 N N N 59 ARG OXT O N N 60 ARG H H N N 61 ARG H2 H N N 62 ARG HA H N N 63 ARG HB2 H N N 64 ARG HB3 H N N 65 ARG HG2 H N N 66 ARG HG3 H N N 67 ARG HD2 H N N 68 ARG HD3 H N N 69 ARG HE H N N 70 ARG HH11 H N N 71 ARG HH12 H N N 72 ARG HH21 H N N 73 ARG HH22 H N N 74 ARG HXT H N N 75 ASN N N N N 76 ASN CA C N S 77 ASN C C N N 78 ASN O O N N 79 ASN CB C N N 80 ASN CG C N N 81 ASN OD1 O N N 82 ASN ND2 N N N 83 ASN OXT O N N 84 ASN H H N N 85 ASN H2 H N N 86 ASN HA H N N 87 ASN HB2 H N N 88 ASN HB3 H N N 89 ASN HD21 H N N 90 ASN HD22 H N N 91 ASN HXT H N N 92 ASP N N N N 93 ASP CA C N S 94 ASP C C N N 95 ASP O O N N 96 ASP CB C N N 97 ASP CG C N N 98 ASP OD1 O N N 99 ASP OD2 O N N 100 ASP OXT O N N 101 ASP H H N N 102 ASP H2 H N N 103 ASP HA H N N 104 ASP HB2 H N N 105 ASP HB3 H N N 106 ASP HD2 H N N 107 ASP HXT H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 DA OP3 O N N 123 DA P P N N 124 DA OP1 O N N 125 DA OP2 O N N 126 DA "O5'" O N N 127 DA "C5'" C N N 128 DA "C4'" C N R 129 DA "O4'" O N N 130 DA "C3'" C N S 131 DA "O3'" O N N 132 DA "C2'" C N N 133 DA "C1'" C N R 134 DA N9 N Y N 135 DA C8 C Y N 136 DA N7 N Y N 137 DA C5 C Y N 138 DA C6 C Y N 139 DA N6 N N N 140 DA N1 N Y N 141 DA C2 C Y N 142 DA N3 N Y N 143 DA C4 C Y N 144 DA HOP3 H N N 145 DA HOP2 H N N 146 DA "H5'" H N N 147 DA "H5''" H N N 148 DA "H4'" H N N 149 DA "H3'" H N N 150 DA "HO3'" H N N 151 DA "H2'" H N N 152 DA "H2''" H N N 153 DA "H1'" H N N 154 DA H8 H N N 155 DA H61 H N N 156 DA H62 H N N 157 DA H2 H N N 158 DC OP3 O N N 159 DC P P N N 160 DC OP1 O N N 161 DC OP2 O N N 162 DC "O5'" O N N 163 DC "C5'" C N N 164 DC "C4'" C N R 165 DC "O4'" O N N 166 DC "C3'" C N S 167 DC "O3'" O N N 168 DC "C2'" C N N 169 DC "C1'" C N R 170 DC N1 N N N 171 DC C2 C N N 172 DC O2 O N N 173 DC N3 N N N 174 DC C4 C N N 175 DC N4 N N N 176 DC C5 C N N 177 DC C6 C N N 178 DC HOP3 H N N 179 DC HOP2 H N N 180 DC "H5'" H N N 181 DC "H5''" H N N 182 DC "H4'" H N N 183 DC "H3'" H N N 184 DC "HO3'" H N N 185 DC "H2'" H N N 186 DC "H2''" H N N 187 DC "H1'" H N N 188 DC H41 H N N 189 DC H42 H N N 190 DC H5 H N N 191 DC H6 H N N 192 DG OP3 O N N 193 DG P P N N 194 DG OP1 O N N 195 DG OP2 O N N 196 DG "O5'" O N N 197 DG "C5'" C N N 198 DG "C4'" C N R 199 DG "O4'" O N N 200 DG "C3'" C N S 201 DG "O3'" O N N 202 DG "C2'" C N N 203 DG "C1'" C N R 204 DG N9 N Y N 205 DG C8 C Y N 206 DG N7 N Y N 207 DG C5 C Y N 208 DG C6 C N N 209 DG O6 O N N 210 DG N1 N N N 211 DG C2 C N N 212 DG N2 N N N 213 DG N3 N N N 214 DG C4 C Y N 215 DG HOP3 H N N 216 DG HOP2 H N N 217 DG "H5'" H N N 218 DG "H5''" H N N 219 DG "H4'" H N N 220 DG "H3'" H N N 221 DG "HO3'" H N N 222 DG "H2'" H N N 223 DG "H2''" H N N 224 DG "H1'" H N N 225 DG H8 H N N 226 DG H1 H N N 227 DG H21 H N N 228 DG H22 H N N 229 DT OP3 O N N 230 DT P P N N 231 DT OP1 O N N 232 DT OP2 O N N 233 DT "O5'" O N N 234 DT "C5'" C N N 235 DT "C4'" C N R 236 DT "O4'" O N N 237 DT "C3'" C N S 238 DT "O3'" O N N 239 DT "C2'" C N N 240 DT "C1'" C N R 241 DT N1 N N N 242 DT C2 C N N 243 DT O2 O N N 244 DT N3 N N N 245 DT C4 C N N 246 DT O4 O N N 247 DT C5 C N N 248 DT C7 C N N 249 DT C6 C N N 250 DT HOP3 H N N 251 DT HOP2 H N N 252 DT "H5'" H N N 253 DT "H5''" H N N 254 DT "H4'" H N N 255 DT "H3'" H N N 256 DT "HO3'" H N N 257 DT "H2'" H N N 258 DT "H2''" H N N 259 DT "H1'" H N N 260 DT H3 H N N 261 DT H71 H N N 262 DT H72 H N N 263 DT H73 H N N 264 DT H6 H N N 265 DX P P N N 266 DX OP1 O N N 267 DX "O5'" O N N 268 DX "C5'" C N N 269 DX "C4'" C N R 270 DX "C3'" C N S 271 DX "O3'" O N N 272 DX "C2'" C N N 273 DX "C1'" C N R 274 DX "O4'" O N N 275 DX N9 N N N 276 DX C4 C N N 277 DX N5 N N N 278 DX C7 C N N 279 DX C8 C N N 280 DX N3 N N N 281 DX C2 C N N 282 DX O2 O N N 283 DX N1 N N N 284 DX C6 C N N 285 DX O6 O N N 286 DX OP2 O N N 287 DX H2 H N N 288 DX H3 H N N 289 DX H4 H N N 290 DX H5 H N N 291 DX H6 H N N 292 DX H7 H N N 293 DX H8 H N N 294 DX H9 H N N 295 DX H10 H N N 296 DX H11 H N N 297 DX H13 H N N 298 DX H14 H N N 299 DX OP3 O N N 300 DX H1 H N N 301 GLN N N N N 302 GLN CA C N S 303 GLN C C N N 304 GLN O O N N 305 GLN CB C N N 306 GLN CG C N N 307 GLN CD C N N 308 GLN OE1 O N N 309 GLN NE2 N N N 310 GLN OXT O N N 311 GLN H H N N 312 GLN H2 H N N 313 GLN HA H N N 314 GLN HB2 H N N 315 GLN HB3 H N N 316 GLN HG2 H N N 317 GLN HG3 H N N 318 GLN HE21 H N N 319 GLN HE22 H N N 320 GLN HXT H N N 321 GLU N N N N 322 GLU CA C N S 323 GLU C C N N 324 GLU O O N N 325 GLU CB C N N 326 GLU CG C N N 327 GLU CD C N N 328 GLU OE1 O N N 329 GLU OE2 O N N 330 GLU OXT O N N 331 GLU H H N N 332 GLU H2 H N N 333 GLU HA H N N 334 GLU HB2 H N N 335 GLU HB3 H N N 336 GLU HG2 H N N 337 GLU HG3 H N N 338 GLU HE2 H N N 339 GLU HXT H N N 340 GLY N N N N 341 GLY CA C N N 342 GLY C C N N 343 GLY O O N N 344 GLY OXT O N N 345 GLY H H N N 346 GLY H2 H N N 347 GLY HA2 H N N 348 GLY HA3 H N N 349 GLY HXT H N N 350 HIS N N N N 351 HIS CA C N S 352 HIS C C N N 353 HIS O O N N 354 HIS CB C N N 355 HIS CG C Y N 356 HIS ND1 N Y N 357 HIS CD2 C Y N 358 HIS CE1 C Y N 359 HIS NE2 N Y N 360 HIS OXT O N N 361 HIS H H N N 362 HIS H2 H N N 363 HIS HA H N N 364 HIS HB2 H N N 365 HIS HB3 H N N 366 HIS HD1 H N N 367 HIS HD2 H N N 368 HIS HE1 H N N 369 HIS HE2 H N N 370 HIS HXT H N N 371 HOH O O N N 372 HOH H1 H N N 373 HOH H2 H N N 374 ILE N N N N 375 ILE CA C N S 376 ILE C C N N 377 ILE O O N N 378 ILE CB C N S 379 ILE CG1 C N N 380 ILE CG2 C N N 381 ILE CD1 C N N 382 ILE OXT O N N 383 ILE H H N N 384 ILE H2 H N N 385 ILE HA H N N 386 ILE HB H N N 387 ILE HG12 H N N 388 ILE HG13 H N N 389 ILE HG21 H N N 390 ILE HG22 H N N 391 ILE HG23 H N N 392 ILE HD11 H N N 393 ILE HD12 H N N 394 ILE HD13 H N N 395 ILE HXT H N N 396 LEU N N N N 397 LEU CA C N S 398 LEU C C N N 399 LEU O O N N 400 LEU CB C N N 401 LEU CG C N N 402 LEU CD1 C N N 403 LEU CD2 C N N 404 LEU OXT O N N 405 LEU H H N N 406 LEU H2 H N N 407 LEU HA H N N 408 LEU HB2 H N N 409 LEU HB3 H N N 410 LEU HG H N N 411 LEU HD11 H N N 412 LEU HD12 H N N 413 LEU HD13 H N N 414 LEU HD21 H N N 415 LEU HD22 H N N 416 LEU HD23 H N N 417 LEU HXT H N N 418 LYS N N N N 419 LYS CA C N S 420 LYS C C N N 421 LYS O O N N 422 LYS CB C N N 423 LYS CG C N N 424 LYS CD C N N 425 LYS CE C N N 426 LYS NZ N N N 427 LYS OXT O N N 428 LYS H H N N 429 LYS H2 H N N 430 LYS HA H N N 431 LYS HB2 H N N 432 LYS HB3 H N N 433 LYS HG2 H N N 434 LYS HG3 H N N 435 LYS HD2 H N N 436 LYS HD3 H N N 437 LYS HE2 H N N 438 LYS HE3 H N N 439 LYS HZ1 H N N 440 LYS HZ2 H N N 441 LYS HZ3 H N N 442 LYS HXT H N N 443 MET N N N N 444 MET CA C N S 445 MET C C N N 446 MET O O N N 447 MET CB C N N 448 MET CG C N N 449 MET SD S N N 450 MET CE C N N 451 MET OXT O N N 452 MET H H N N 453 MET H2 H N N 454 MET HA H N N 455 MET HB2 H N N 456 MET HB3 H N N 457 MET HG2 H N N 458 MET HG3 H N N 459 MET HE1 H N N 460 MET HE2 H N N 461 MET HE3 H N N 462 MET HXT H N N 463 PHE N N N N 464 PHE CA C N S 465 PHE C C N N 466 PHE O O N N 467 PHE CB C N N 468 PHE CG C Y N 469 PHE CD1 C Y N 470 PHE CD2 C Y N 471 PHE CE1 C Y N 472 PHE CE2 C Y N 473 PHE CZ C Y N 474 PHE OXT O N N 475 PHE H H N N 476 PHE H2 H N N 477 PHE HA H N N 478 PHE HB2 H N N 479 PHE HB3 H N N 480 PHE HD1 H N N 481 PHE HD2 H N N 482 PHE HE1 H N N 483 PHE HE2 H N N 484 PHE HZ H N N 485 PHE HXT H N N 486 PRO N N N N 487 PRO CA C N S 488 PRO C C N N 489 PRO O O N N 490 PRO CB C N N 491 PRO CG C N N 492 PRO CD C N N 493 PRO OXT O N N 494 PRO H H N N 495 PRO HA H N N 496 PRO HB2 H N N 497 PRO HB3 H N N 498 PRO HG2 H N N 499 PRO HG3 H N N 500 PRO HD2 H N N 501 PRO HD3 H N N 502 PRO HXT H N N 503 SER N N N N 504 SER CA C N S 505 SER C C N N 506 SER O O N N 507 SER CB C N N 508 SER OG O N N 509 SER OXT O N N 510 SER H H N N 511 SER H2 H N N 512 SER HA H N N 513 SER HB2 H N N 514 SER HB3 H N N 515 SER HG H N N 516 SER HXT H N N 517 THR N N N N 518 THR CA C N S 519 THR C C N N 520 THR O O N N 521 THR CB C N R 522 THR OG1 O N N 523 THR CG2 C N N 524 THR OXT O N N 525 THR H H N N 526 THR H2 H N N 527 THR HA H N N 528 THR HB H N N 529 THR HG1 H N N 530 THR HG21 H N N 531 THR HG22 H N N 532 THR HG23 H N N 533 THR HXT H N N 534 TRP N N N N 535 TRP CA C N S 536 TRP C C N N 537 TRP O O N N 538 TRP CB C N N 539 TRP CG C Y N 540 TRP CD1 C Y N 541 TRP CD2 C Y N 542 TRP NE1 N Y N 543 TRP CE2 C Y N 544 TRP CE3 C Y N 545 TRP CZ2 C Y N 546 TRP CZ3 C Y N 547 TRP CH2 C Y N 548 TRP OXT O N N 549 TRP H H N N 550 TRP H2 H N N 551 TRP HA H N N 552 TRP HB2 H N N 553 TRP HB3 H N N 554 TRP HD1 H N N 555 TRP HE1 H N N 556 TRP HE3 H N N 557 TRP HZ2 H N N 558 TRP HZ3 H N N 559 TRP HH2 H N N 560 TRP HXT H N N 561 TYR N N N N 562 TYR CA C N S 563 TYR C C N N 564 TYR O O N N 565 TYR CB C N N 566 TYR CG C Y N 567 TYR CD1 C Y N 568 TYR CD2 C Y N 569 TYR CE1 C Y N 570 TYR CE2 C Y N 571 TYR CZ C Y N 572 TYR OH O N N 573 TYR OXT O N N 574 TYR H H N N 575 TYR H2 H N N 576 TYR HA H N N 577 TYR HB2 H N N 578 TYR HB3 H N N 579 TYR HD1 H N N 580 TYR HD2 H N N 581 TYR HE1 H N N 582 TYR HE2 H N N 583 TYR HH H N N 584 TYR HXT H N N 585 VAL N N N N 586 VAL CA C N S 587 VAL C C N N 588 VAL O O N N 589 VAL CB C N N 590 VAL CG1 C N N 591 VAL CG2 C N N 592 VAL OXT O N N 593 VAL H H N N 594 VAL H2 H N N 595 VAL HA H N N 596 VAL HB H N N 597 VAL HG11 H N N 598 VAL HG12 H N N 599 VAL HG13 H N N 600 VAL HG21 H N N 601 VAL HG22 H N N 602 VAL HG23 H N N 603 VAL HXT H N N 604 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 93D N4 C4 sing N N 1 93D C4 N3 doub Y N 2 93D C4 N5 sing Y N 3 93D N3 C2 sing Y N 4 93D N5 C6 doub Y N 5 93D C2 N2 sing N N 6 93D C2 C1 doub Y N 7 93D C6 C1 sing Y N 8 93D C1 "C1'" sing N N 9 93D "C1'" "O4'" sing N N 10 93D "C1'" "C2'" sing N N 11 93D "O4'" "C4'" sing N N 12 93D "C2'" "C3'" sing N N 13 93D OP3 P sing N N 14 93D "C4'" "C5'" sing N N 15 93D "C4'" "C3'" sing N N 16 93D P "O5'" sing N N 17 93D P OP2 sing N N 18 93D "O5'" "C5'" sing N N 19 93D "C3'" "O3'" sing N N 20 93D OP2 HOP2 sing N N 21 93D "C5'" H2 sing N N 22 93D "C5'" H3 sing N N 23 93D "C4'" H4 sing N N 24 93D "C3'" H5 sing N N 25 93D "O3'" H6 sing N N 26 93D "C2'" H7 sing N N 27 93D "C2'" H8 sing N N 28 93D "C1'" H9 sing N N 29 93D C6 H10 sing N N 30 93D N2 H11 sing N N 31 93D N2 H12 sing N N 32 93D N4 H13 sing N N 33 93D N4 H14 sing N N 34 93D OP3 HOP3 sing N N 35 93D P OP1 doub N N 36 ALA N CA sing N N 37 ALA N H sing N N 38 ALA N H2 sing N N 39 ALA CA C sing N N 40 ALA CA CB sing N N 41 ALA CA HA sing N N 42 ALA C O doub N N 43 ALA C OXT sing N N 44 ALA CB HB1 sing N N 45 ALA CB HB2 sing N N 46 ALA CB HB3 sing N N 47 ALA OXT HXT sing N N 48 ARG N CA sing N N 49 ARG N H sing N N 50 ARG N H2 sing N N 51 ARG CA C sing N N 52 ARG CA CB sing N N 53 ARG CA HA sing N N 54 ARG C O doub N N 55 ARG C OXT sing N N 56 ARG CB CG sing N N 57 ARG CB HB2 sing N N 58 ARG CB HB3 sing N N 59 ARG CG CD sing N N 60 ARG CG HG2 sing N N 61 ARG CG HG3 sing N N 62 ARG CD NE sing N N 63 ARG CD HD2 sing N N 64 ARG CD HD3 sing N N 65 ARG NE CZ sing N N 66 ARG NE HE sing N N 67 ARG CZ NH1 sing N N 68 ARG CZ NH2 doub N N 69 ARG NH1 HH11 sing N N 70 ARG NH1 HH12 sing N N 71 ARG NH2 HH21 sing N N 72 ARG NH2 HH22 sing N N 73 ARG OXT HXT sing N N 74 ASN N CA sing N N 75 ASN N H sing N N 76 ASN N H2 sing N N 77 ASN CA C sing N N 78 ASN CA CB sing N N 79 ASN CA HA sing N N 80 ASN C O doub N N 81 ASN C OXT sing N N 82 ASN CB CG sing N N 83 ASN CB HB2 sing N N 84 ASN CB HB3 sing N N 85 ASN CG OD1 doub N N 86 ASN CG ND2 sing N N 87 ASN ND2 HD21 sing N N 88 ASN ND2 HD22 sing N N 89 ASN OXT HXT sing N N 90 ASP N CA sing N N 91 ASP N H sing N N 92 ASP N H2 sing N N 93 ASP CA C sing N N 94 ASP CA CB sing N N 95 ASP CA HA sing N N 96 ASP C O doub N N 97 ASP C OXT sing N N 98 ASP CB CG sing N N 99 ASP CB HB2 sing N N 100 ASP CB HB3 sing N N 101 ASP CG OD1 doub N N 102 ASP CG OD2 sing N N 103 ASP OD2 HD2 sing N N 104 ASP OXT HXT sing N N 105 CYS N CA sing N N 106 CYS N H sing N N 107 CYS N H2 sing N N 108 CYS CA C sing N N 109 CYS CA CB sing N N 110 CYS CA HA sing N N 111 CYS C O doub N N 112 CYS C OXT sing N N 113 CYS CB SG sing N N 114 CYS CB HB2 sing N N 115 CYS CB HB3 sing N N 116 CYS SG HG sing N N 117 CYS OXT HXT sing N N 118 DA OP3 P sing N N 119 DA OP3 HOP3 sing N N 120 DA P OP1 doub N N 121 DA P OP2 sing N N 122 DA P "O5'" sing N N 123 DA OP2 HOP2 sing N N 124 DA "O5'" "C5'" sing N N 125 DA "C5'" "C4'" sing N N 126 DA "C5'" "H5'" sing N N 127 DA "C5'" "H5''" sing N N 128 DA "C4'" "O4'" sing N N 129 DA "C4'" "C3'" sing N N 130 DA "C4'" "H4'" sing N N 131 DA "O4'" "C1'" sing N N 132 DA "C3'" "O3'" sing N N 133 DA "C3'" "C2'" sing N N 134 DA "C3'" "H3'" sing N N 135 DA "O3'" "HO3'" sing N N 136 DA "C2'" "C1'" sing N N 137 DA "C2'" "H2'" sing N N 138 DA "C2'" "H2''" sing N N 139 DA "C1'" N9 sing N N 140 DA "C1'" "H1'" sing N N 141 DA N9 C8 sing Y N 142 DA N9 C4 sing Y N 143 DA C8 N7 doub Y N 144 DA C8 H8 sing N N 145 DA N7 C5 sing Y N 146 DA C5 C6 sing Y N 147 DA C5 C4 doub Y N 148 DA C6 N6 sing N N 149 DA C6 N1 doub Y N 150 DA N6 H61 sing N N 151 DA N6 H62 sing N N 152 DA N1 C2 sing Y N 153 DA C2 N3 doub Y N 154 DA C2 H2 sing N N 155 DA N3 C4 sing Y N 156 DC OP3 P sing N N 157 DC OP3 HOP3 sing N N 158 DC P OP1 doub N N 159 DC P OP2 sing N N 160 DC P "O5'" sing N N 161 DC OP2 HOP2 sing N N 162 DC "O5'" "C5'" sing N N 163 DC "C5'" "C4'" sing N N 164 DC "C5'" "H5'" sing N N 165 DC "C5'" "H5''" sing N N 166 DC "C4'" "O4'" sing N N 167 DC "C4'" "C3'" sing N N 168 DC "C4'" "H4'" sing N N 169 DC "O4'" "C1'" sing N N 170 DC "C3'" "O3'" sing N N 171 DC "C3'" "C2'" sing N N 172 DC "C3'" "H3'" sing N N 173 DC "O3'" "HO3'" sing N N 174 DC "C2'" "C1'" sing N N 175 DC "C2'" "H2'" sing N N 176 DC "C2'" "H2''" sing N N 177 DC "C1'" N1 sing N N 178 DC "C1'" "H1'" sing N N 179 DC N1 C2 sing N N 180 DC N1 C6 sing N N 181 DC C2 O2 doub N N 182 DC C2 N3 sing N N 183 DC N3 C4 doub N N 184 DC C4 N4 sing N N 185 DC C4 C5 sing N N 186 DC N4 H41 sing N N 187 DC N4 H42 sing N N 188 DC C5 C6 doub N N 189 DC C5 H5 sing N N 190 DC C6 H6 sing N N 191 DG OP3 P sing N N 192 DG OP3 HOP3 sing N N 193 DG P OP1 doub N N 194 DG P OP2 sing N N 195 DG P "O5'" sing N N 196 DG OP2 HOP2 sing N N 197 DG "O5'" "C5'" sing N N 198 DG "C5'" "C4'" sing N N 199 DG "C5'" "H5'" sing N N 200 DG "C5'" "H5''" sing N N 201 DG "C4'" "O4'" sing N N 202 DG "C4'" "C3'" sing N N 203 DG "C4'" "H4'" sing N N 204 DG "O4'" "C1'" sing N N 205 DG "C3'" "O3'" sing N N 206 DG "C3'" "C2'" sing N N 207 DG "C3'" "H3'" sing N N 208 DG "O3'" "HO3'" sing N N 209 DG "C2'" "C1'" sing N N 210 DG "C2'" "H2'" sing N N 211 DG "C2'" "H2''" sing N N 212 DG "C1'" N9 sing N N 213 DG "C1'" "H1'" sing N N 214 DG N9 C8 sing Y N 215 DG N9 C4 sing Y N 216 DG C8 N7 doub Y N 217 DG C8 H8 sing N N 218 DG N7 C5 sing Y N 219 DG C5 C6 sing N N 220 DG C5 C4 doub Y N 221 DG C6 O6 doub N N 222 DG C6 N1 sing N N 223 DG N1 C2 sing N N 224 DG N1 H1 sing N N 225 DG C2 N2 sing N N 226 DG C2 N3 doub N N 227 DG N2 H21 sing N N 228 DG N2 H22 sing N N 229 DG N3 C4 sing N N 230 DT OP3 P sing N N 231 DT OP3 HOP3 sing N N 232 DT P OP1 doub N N 233 DT P OP2 sing N N 234 DT P "O5'" sing N N 235 DT OP2 HOP2 sing N N 236 DT "O5'" "C5'" sing N N 237 DT "C5'" "C4'" sing N N 238 DT "C5'" "H5'" sing N N 239 DT "C5'" "H5''" sing N N 240 DT "C4'" "O4'" sing N N 241 DT "C4'" "C3'" sing N N 242 DT "C4'" "H4'" sing N N 243 DT "O4'" "C1'" sing N N 244 DT "C3'" "O3'" sing N N 245 DT "C3'" "C2'" sing N N 246 DT "C3'" "H3'" sing N N 247 DT "O3'" "HO3'" sing N N 248 DT "C2'" "C1'" sing N N 249 DT "C2'" "H2'" sing N N 250 DT "C2'" "H2''" sing N N 251 DT "C1'" N1 sing N N 252 DT "C1'" "H1'" sing N N 253 DT N1 C2 sing N N 254 DT N1 C6 sing N N 255 DT C2 O2 doub N N 256 DT C2 N3 sing N N 257 DT N3 C4 sing N N 258 DT N3 H3 sing N N 259 DT C4 O4 doub N N 260 DT C4 C5 sing N N 261 DT C5 C7 sing N N 262 DT C5 C6 doub N N 263 DT C7 H71 sing N N 264 DT C7 H72 sing N N 265 DT C7 H73 sing N N 266 DT C6 H6 sing N N 267 DX O2 C2 doub N N 268 DX N1 C2 sing N N 269 DX N1 C6 sing N N 270 DX O6 C6 doub N N 271 DX C2 N3 sing N N 272 DX C6 N5 sing N N 273 DX N3 C4 doub N N 274 DX N5 C4 sing N N 275 DX N5 C7 sing N N 276 DX C4 N9 sing N N 277 DX C7 C8 doub N N 278 DX N9 C8 sing N N 279 DX N9 "C1'" sing N N 280 DX "C2'" "C1'" sing N N 281 DX "C2'" "C3'" sing N N 282 DX "C1'" "O4'" sing N N 283 DX "O5'" P sing N N 284 DX "O5'" "C5'" sing N N 285 DX P OP1 doub N N 286 DX P OP2 sing N N 287 DX "C3'" "O3'" sing N N 288 DX "C3'" "C4'" sing N N 289 DX "O4'" "C4'" sing N N 290 DX "C4'" "C5'" sing N N 291 DX "C5'" H2 sing N N 292 DX "C5'" H3 sing N N 293 DX "C4'" H4 sing N N 294 DX "C3'" H5 sing N N 295 DX "O3'" H6 sing N N 296 DX "C2'" H7 sing N N 297 DX "C2'" H8 sing N N 298 DX "C1'" H9 sing N N 299 DX C7 H10 sing N N 300 DX C8 H11 sing N N 301 DX N1 H13 sing N N 302 DX OP2 H14 sing N N 303 DX P OP3 sing N N 304 DX OP3 H1 sing N N 305 GLN N CA sing N N 306 GLN N H sing N N 307 GLN N H2 sing N N 308 GLN CA C sing N N 309 GLN CA CB sing N N 310 GLN CA HA sing N N 311 GLN C O doub N N 312 GLN C OXT sing N N 313 GLN CB CG sing N N 314 GLN CB HB2 sing N N 315 GLN CB HB3 sing N N 316 GLN CG CD sing N N 317 GLN CG HG2 sing N N 318 GLN CG HG3 sing N N 319 GLN CD OE1 doub N N 320 GLN CD NE2 sing N N 321 GLN NE2 HE21 sing N N 322 GLN NE2 HE22 sing N N 323 GLN OXT HXT sing N N 324 GLU N CA sing N N 325 GLU N H sing N N 326 GLU N H2 sing N N 327 GLU CA C sing N N 328 GLU CA CB sing N N 329 GLU CA HA sing N N 330 GLU C O doub N N 331 GLU C OXT sing N N 332 GLU CB CG sing N N 333 GLU CB HB2 sing N N 334 GLU CB HB3 sing N N 335 GLU CG CD sing N N 336 GLU CG HG2 sing N N 337 GLU CG HG3 sing N N 338 GLU CD OE1 doub N N 339 GLU CD OE2 sing N N 340 GLU OE2 HE2 sing N N 341 GLU OXT HXT sing N N 342 GLY N CA sing N N 343 GLY N H sing N N 344 GLY N H2 sing N N 345 GLY CA C sing N N 346 GLY CA HA2 sing N N 347 GLY CA HA3 sing N N 348 GLY C O doub N N 349 GLY C OXT sing N N 350 GLY OXT HXT sing N N 351 HIS N CA sing N N 352 HIS N H sing N N 353 HIS N H2 sing N N 354 HIS CA C sing N N 355 HIS CA CB sing N N 356 HIS CA HA sing N N 357 HIS C O doub N N 358 HIS C OXT sing N N 359 HIS CB CG sing N N 360 HIS CB HB2 sing N N 361 HIS CB HB3 sing N N 362 HIS CG ND1 sing Y N 363 HIS CG CD2 doub Y N 364 HIS ND1 CE1 doub Y N 365 HIS ND1 HD1 sing N N 366 HIS CD2 NE2 sing Y N 367 HIS CD2 HD2 sing N N 368 HIS CE1 NE2 sing Y N 369 HIS CE1 HE1 sing N N 370 HIS NE2 HE2 sing N N 371 HIS OXT HXT sing N N 372 HOH O H1 sing N N 373 HOH O H2 sing N N 374 ILE N CA sing N N 375 ILE N H sing N N 376 ILE N H2 sing N N 377 ILE CA C sing N N 378 ILE CA CB sing N N 379 ILE CA HA sing N N 380 ILE C O doub N N 381 ILE C OXT sing N N 382 ILE CB CG1 sing N N 383 ILE CB CG2 sing N N 384 ILE CB HB sing N N 385 ILE CG1 CD1 sing N N 386 ILE CG1 HG12 sing N N 387 ILE CG1 HG13 sing N N 388 ILE CG2 HG21 sing N N 389 ILE CG2 HG22 sing N N 390 ILE CG2 HG23 sing N N 391 ILE CD1 HD11 sing N N 392 ILE CD1 HD12 sing N N 393 ILE CD1 HD13 sing N N 394 ILE OXT HXT sing N N 395 LEU N CA sing N N 396 LEU N H sing N N 397 LEU N H2 sing N N 398 LEU CA C sing N N 399 LEU CA CB sing N N 400 LEU CA HA sing N N 401 LEU C O doub N N 402 LEU C OXT sing N N 403 LEU CB CG sing N N 404 LEU CB HB2 sing N N 405 LEU CB HB3 sing N N 406 LEU CG CD1 sing N N 407 LEU CG CD2 sing N N 408 LEU CG HG sing N N 409 LEU CD1 HD11 sing N N 410 LEU CD1 HD12 sing N N 411 LEU CD1 HD13 sing N N 412 LEU CD2 HD21 sing N N 413 LEU CD2 HD22 sing N N 414 LEU CD2 HD23 sing N N 415 LEU OXT HXT sing N N 416 LYS N CA sing N N 417 LYS N H sing N N 418 LYS N H2 sing N N 419 LYS CA C sing N N 420 LYS CA CB sing N N 421 LYS CA HA sing N N 422 LYS C O doub N N 423 LYS C OXT sing N N 424 LYS CB CG sing N N 425 LYS CB HB2 sing N N 426 LYS CB HB3 sing N N 427 LYS CG CD sing N N 428 LYS CG HG2 sing N N 429 LYS CG HG3 sing N N 430 LYS CD CE sing N N 431 LYS CD HD2 sing N N 432 LYS CD HD3 sing N N 433 LYS CE NZ sing N N 434 LYS CE HE2 sing N N 435 LYS CE HE3 sing N N 436 LYS NZ HZ1 sing N N 437 LYS NZ HZ2 sing N N 438 LYS NZ HZ3 sing N N 439 LYS OXT HXT sing N N 440 MET N CA sing N N 441 MET N H sing N N 442 MET N H2 sing N N 443 MET CA C sing N N 444 MET CA CB sing N N 445 MET CA HA sing N N 446 MET C O doub N N 447 MET C OXT sing N N 448 MET CB CG sing N N 449 MET CB HB2 sing N N 450 MET CB HB3 sing N N 451 MET CG SD sing N N 452 MET CG HG2 sing N N 453 MET CG HG3 sing N N 454 MET SD CE sing N N 455 MET CE HE1 sing N N 456 MET CE HE2 sing N N 457 MET CE HE3 sing N N 458 MET OXT HXT sing N N 459 PHE N CA sing N N 460 PHE N H sing N N 461 PHE N H2 sing N N 462 PHE CA C sing N N 463 PHE CA CB sing N N 464 PHE CA HA sing N N 465 PHE C O doub N N 466 PHE C OXT sing N N 467 PHE CB CG sing N N 468 PHE CB HB2 sing N N 469 PHE CB HB3 sing N N 470 PHE CG CD1 doub Y N 471 PHE CG CD2 sing Y N 472 PHE CD1 CE1 sing Y N 473 PHE CD1 HD1 sing N N 474 PHE CD2 CE2 doub Y N 475 PHE CD2 HD2 sing N N 476 PHE CE1 CZ doub Y N 477 PHE CE1 HE1 sing N N 478 PHE CE2 CZ sing Y N 479 PHE CE2 HE2 sing N N 480 PHE CZ HZ sing N N 481 PHE OXT HXT sing N N 482 PRO N CA sing N N 483 PRO N CD sing N N 484 PRO N H sing N N 485 PRO CA C sing N N 486 PRO CA CB sing N N 487 PRO CA HA sing N N 488 PRO C O doub N N 489 PRO C OXT sing N N 490 PRO CB CG sing N N 491 PRO CB HB2 sing N N 492 PRO CB HB3 sing N N 493 PRO CG CD sing N N 494 PRO CG HG2 sing N N 495 PRO CG HG3 sing N N 496 PRO CD HD2 sing N N 497 PRO CD HD3 sing N N 498 PRO OXT HXT sing N N 499 SER N CA sing N N 500 SER N H sing N N 501 SER N H2 sing N N 502 SER CA C sing N N 503 SER CA CB sing N N 504 SER CA HA sing N N 505 SER C O doub N N 506 SER C OXT sing N N 507 SER CB OG sing N N 508 SER CB HB2 sing N N 509 SER CB HB3 sing N N 510 SER OG HG sing N N 511 SER OXT HXT sing N N 512 THR N CA sing N N 513 THR N H sing N N 514 THR N H2 sing N N 515 THR CA C sing N N 516 THR CA CB sing N N 517 THR CA HA sing N N 518 THR C O doub N N 519 THR C OXT sing N N 520 THR CB OG1 sing N N 521 THR CB CG2 sing N N 522 THR CB HB sing N N 523 THR OG1 HG1 sing N N 524 THR CG2 HG21 sing N N 525 THR CG2 HG22 sing N N 526 THR CG2 HG23 sing N N 527 THR OXT HXT sing N N 528 TRP N CA sing N N 529 TRP N H sing N N 530 TRP N H2 sing N N 531 TRP CA C sing N N 532 TRP CA CB sing N N 533 TRP CA HA sing N N 534 TRP C O doub N N 535 TRP C OXT sing N N 536 TRP CB CG sing N N 537 TRP CB HB2 sing N N 538 TRP CB HB3 sing N N 539 TRP CG CD1 doub Y N 540 TRP CG CD2 sing Y N 541 TRP CD1 NE1 sing Y N 542 TRP CD1 HD1 sing N N 543 TRP CD2 CE2 doub Y N 544 TRP CD2 CE3 sing Y N 545 TRP NE1 CE2 sing Y N 546 TRP NE1 HE1 sing N N 547 TRP CE2 CZ2 sing Y N 548 TRP CE3 CZ3 doub Y N 549 TRP CE3 HE3 sing N N 550 TRP CZ2 CH2 doub Y N 551 TRP CZ2 HZ2 sing N N 552 TRP CZ3 CH2 sing Y N 553 TRP CZ3 HZ3 sing N N 554 TRP CH2 HH2 sing N N 555 TRP OXT HXT sing N N 556 TYR N CA sing N N 557 TYR N H sing N N 558 TYR N H2 sing N N 559 TYR CA C sing N N 560 TYR CA CB sing N N 561 TYR CA HA sing N N 562 TYR C O doub N N 563 TYR C OXT sing N N 564 TYR CB CG sing N N 565 TYR CB HB2 sing N N 566 TYR CB HB3 sing N N 567 TYR CG CD1 doub Y N 568 TYR CG CD2 sing Y N 569 TYR CD1 CE1 sing Y N 570 TYR CD1 HD1 sing N N 571 TYR CD2 CE2 doub Y N 572 TYR CD2 HD2 sing N N 573 TYR CE1 CZ doub Y N 574 TYR CE1 HE1 sing N N 575 TYR CE2 CZ sing Y N 576 TYR CE2 HE2 sing N N 577 TYR CZ OH sing N N 578 TYR OH HH sing N N 579 TYR OXT HXT sing N N 580 VAL N CA sing N N 581 VAL N H sing N N 582 VAL N H2 sing N N 583 VAL CA C sing N N 584 VAL CA CB sing N N 585 VAL CA HA sing N N 586 VAL C O doub N N 587 VAL C OXT sing N N 588 VAL CB CG1 sing N N 589 VAL CB CG2 sing N N 590 VAL CB HB sing N N 591 VAL CG1 HG11 sing N N 592 VAL CG1 HG12 sing N N 593 VAL CG1 HG13 sing N N 594 VAL CG2 HG21 sing N N 595 VAL CG2 HG22 sing N N 596 VAL CG2 HG23 sing N N 597 VAL OXT HXT sing N N 598 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5VBS 'double helix' 5VBS 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 8 1_555 0.185 -0.246 0.035 -12.753 -4.154 -1.434 1 B_DC1:DG16_G B 1 ? G 16 ? 19 1 1 B DT 2 1_555 C DA 7 1_555 -0.145 -0.123 0.313 -13.163 -8.063 1.280 2 B_DT2:DA15_G B 2 ? G 15 ? 20 1 1 B DT 3 1_555 C DA 6 1_555 0.132 -0.130 -0.118 0.123 -9.135 4.602 3 B_DT3:DA14_G B 3 ? G 14 ? 20 1 1 B DA 4 1_555 C DT 5 1_555 -0.376 -0.037 -0.105 -7.855 -13.129 2.317 4 B_DA4:DT13_G B 4 ? G 13 ? 20 1 1 B DT 5 1_555 C DA 4 1_555 0.232 -0.049 -0.103 -7.426 -14.543 -2.698 5 B_DT5:DA12_G B 5 ? G 12 ? 20 1 1 B DT 8 1_555 C DA 1 1_555 -0.725 -0.310 -0.240 8.555 -10.904 -6.847 6 B_DT8:DA9_G B 8 ? G 9 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 8 1_555 B DT 2 1_555 C DA 7 1_555 0.795 -0.262 3.327 0.742 6.519 35.507 -1.358 -1.177 3.245 10.578 -1.204 36.089 1 BB_DC1DT2:DA15DG16_GG B 1 ? G 16 ? B 2 ? G 15 ? 1 B DT 2 1_555 C DA 7 1_555 B DT 3 1_555 C DA 6 1_555 0.130 -0.192 2.926 3.050 4.193 30.466 -1.088 0.284 2.874 7.906 -5.752 30.894 2 BB_DT2DT3:DA14DA15_GG B 2 ? G 15 ? B 3 ? G 14 ? 1 B DT 3 1_555 C DA 6 1_555 B DA 4 1_555 C DT 5 1_555 -0.605 0.282 3.439 -4.322 8.123 36.469 -0.698 0.335 3.467 12.732 6.774 37.574 3 BB_DT3DA4:DT13DA14_GG B 3 ? G 14 ? B 4 ? G 13 ? 1 B DA 4 1_555 C DT 5 1_555 B DT 5 1_555 C DA 4 1_555 -0.486 -0.712 3.313 1.005 2.304 33.942 -1.585 0.991 3.244 3.940 -1.718 34.033 4 BB_DA4DT5:DA12DT13_GG B 4 ? G 13 ? B 5 ? G 12 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1XO0 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #