data_5VKG # _entry.id 5VKG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5VKG pdb_00005vkg 10.2210/pdb5vkg/pdb WWPDB D_1000227070 ? ? BMRB 30285 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution-state NMR structural ensemble of human Tsg101 UEV in complex with tenatoprazole' _pdbx_database_related.db_id 30285 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5VKG _pdbx_database_status.recvd_initial_deposition_date 2017-04-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Strickland, M.' 1 0000-0001-8160-070X 'Ehrlich, L.S.' 2 ? 'Watanabe, S.' 3 ? 'Khan, M.' 4 ? 'Strub, M.-P.' 5 ? 'Luan, C.H.' 6 ? 'Powell, M.D.' 7 ? 'Leis, J.' 8 ? 'Tjandra, N.' 9 ? 'Carter, C.' 10 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 1391 _citation.page_last 1391 _citation.title 'Tsg101 chaperone function revealed by HIV-1 assembly inhibitors.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-017-01426-2 _citation.pdbx_database_id_PubMed 29123089 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Strickland, M.' 1 ? primary 'Ehrlich, L.S.' 2 ? primary 'Watanabe, S.' 3 ? primary 'Khan, M.' 4 ? primary 'Strub, M.P.' 5 ? primary 'Luan, C.H.' 6 ? primary 'Powell, M.D.' 7 ? primary 'Leis, J.' 8 ? primary 'Tjandra, N.' 9 ? primary 'Carter, C.A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor susceptibility gene 101 protein' 16559.207 1 ? M1G ? ? 2 non-polymer syn '4-methoxy-1-(5-methoxy-3H-imidazo[4,5-b]pyridin-2-yl)-3,5-dimethyl-2-(sulfanylmethyl)pyridin-1-ium' 331.413 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ESCRT-I complex subunit TSG101' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTY PYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP ; _entity_poly.pdbx_seq_one_letter_code_can ;GAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTY PYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 VAL n 1 4 SER n 1 5 GLU n 1 6 SER n 1 7 GLN n 1 8 LEU n 1 9 LYS n 1 10 LYS n 1 11 MET n 1 12 VAL n 1 13 SER n 1 14 LYS n 1 15 TYR n 1 16 LYS n 1 17 TYR n 1 18 ARG n 1 19 ASP n 1 20 LEU n 1 21 THR n 1 22 VAL n 1 23 ARG n 1 24 GLU n 1 25 THR n 1 26 VAL n 1 27 ASN n 1 28 VAL n 1 29 ILE n 1 30 THR n 1 31 LEU n 1 32 TYR n 1 33 LYS n 1 34 ASP n 1 35 LEU n 1 36 LYS n 1 37 PRO n 1 38 VAL n 1 39 LEU n 1 40 ASP n 1 41 SER n 1 42 TYR n 1 43 VAL n 1 44 PHE n 1 45 ASN n 1 46 ASP n 1 47 GLY n 1 48 SER n 1 49 SER n 1 50 ARG n 1 51 GLU n 1 52 LEU n 1 53 MET n 1 54 ASN n 1 55 LEU n 1 56 THR n 1 57 GLY n 1 58 THR n 1 59 ILE n 1 60 PRO n 1 61 VAL n 1 62 PRO n 1 63 TYR n 1 64 ARG n 1 65 GLY n 1 66 ASN n 1 67 THR n 1 68 TYR n 1 69 ASN n 1 70 ILE n 1 71 PRO n 1 72 ILE n 1 73 CYS n 1 74 LEU n 1 75 TRP n 1 76 LEU n 1 77 LEU n 1 78 ASP n 1 79 THR n 1 80 TYR n 1 81 PRO n 1 82 TYR n 1 83 ASN n 1 84 PRO n 1 85 PRO n 1 86 ILE n 1 87 CYS n 1 88 PHE n 1 89 VAL n 1 90 LYS n 1 91 PRO n 1 92 THR n 1 93 SER n 1 94 SER n 1 95 MET n 1 96 THR n 1 97 ILE n 1 98 LYS n 1 99 THR n 1 100 GLY n 1 101 LYS n 1 102 HIS n 1 103 VAL n 1 104 ASP n 1 105 ALA n 1 106 ASN n 1 107 GLY n 1 108 LYS n 1 109 ILE n 1 110 TYR n 1 111 LEU n 1 112 PRO n 1 113 TYR n 1 114 LEU n 1 115 HIS n 1 116 GLU n 1 117 TRP n 1 118 LYS n 1 119 HIS n 1 120 PRO n 1 121 GLN n 1 122 SER n 1 123 ASP n 1 124 LEU n 1 125 LEU n 1 126 GLY n 1 127 LEU n 1 128 ILE n 1 129 GLN n 1 130 VAL n 1 131 MET n 1 132 ILE n 1 133 VAL n 1 134 VAL n 1 135 PHE n 1 136 GLY n 1 137 ASP n 1 138 GLU n 1 139 PRO n 1 140 PRO n 1 141 VAL n 1 142 PHE n 1 143 SER n 1 144 ARG n 1 145 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 145 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TSG101 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-28B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TS101_HUMAN _struct_ref.pdbx_db_accession Q99816 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAVSESQLKKMVSKYKYRDLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTY PYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPVFSRP ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5VKG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 145 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99816 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 145 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 145 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5VKG _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q99816 _struct_ref_seq_dif.db_mon_id MET _struct_ref_seq_dif.pdbx_seq_db_seq_num 1 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4N1 non-polymer . '4-methoxy-1-(5-methoxy-3H-imidazo[4,5-b]pyridin-2-yl)-3,5-dimethyl-2-(sulfanylmethyl)pyridin-1-ium' ? 'C16 H19 N4 O2 S 1' 331.413 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 2 2 '2D 1H-13C HSQC aliphatic' 2 isotropic 3 1 1 '3D HNCACB' 1 isotropic 4 1 1 '3D H(CCO)NH' 1 isotropic 5 1 1 '3D 1H-15N NOESY' 2 isotropic 6 2 2 '3D 1H-13C NOESY aliphatic' 3 isotropic 7 2 2 '3D 1H-13C NOESY aromatic' 2 isotropic 8 2 1 '3D 1H-13C-12C filtered NOESY aliphatic' 2 isotropic 9 1 1 '3D CBCA(CO)NH' 1 isotropic 10 1 1 '3D C(CO)NH' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 300 atm 1 5.8 0.1 ? ? M 15N13C_H2O_cond ? pH ? ? K 2 300 atm 1 5.8 0.1 ? ? mM 15N13C_D2O_cond ? pH* ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.6 mM [U-98% 13C; U-98% 15N] Tsg101, 0.6 mM Tenatoprazole, 20 mM potassium phosphate, 50 mM sodium chloride, 93% H2O/7% D2O' '93% H2O/7% D2O' 15N13C_H2O solution ;Tenatoprazole (dissolved in DMSO) was allowed to react covalently with Tsg101, which was followed by buffer exchange to remove excess DMSO and tenatoprazole. ; 2 '0.6 mM [U-13C; U-15N] Tsg101, 0.6 mM Tenatoprazole, 20 mM potassium phosphate, 50 mM sodium chloride, 100% D2O' '100% D2O' 15N13C_D2O solution '13C-NOESY experiments were carried out using this sample.' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 Cryoprobe 2 AVANCE ? Bruker 800 Cryoprobe 3 AVANCE ? Bruker 900 ? # _pdbx_nmr_refine.details ? _pdbx_nmr_refine.entry_id 5VKG _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.software_ordinal 7 # _pdbx_nmr_ensemble.entry_id 5VKG _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 5VKG _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 3.0 'Bruker Biospin' 2 processing NMRPipe 8.2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 processing NMRDraw 8.2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 4 'peak picking' Analysis 2.4.2 CCPN 5 'chemical shift assignment' Analysis 2.4.2 CCPN 6 'data analysis' Analysis 2.4.2 CCPN 7 refinement 'X-PLOR NIH' 2.37.7 'Schwieters, Kuszewski, Tjandra and Clore' 8 'data analysis' PSVS 1.5 'Bhattacharya and Montelione' 9 'geometry optimization' Gaussian 9 'Gaussian, Inc.' 10 'data analysis' TALOS-N 4.12 'Yang Shen and Ad Bax' 11 'structure calculation' 'X-PLOR NIH' 2.37.7 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VKG _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5VKG _struct.title 'Solution-state NMR structural ensemble of human Tsg101 UEV in complex with tenatoprazole' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VKG _struct_keywords.text 'ESCRT-I, inhibitor, cell cycle, cell cycle-inhibitor complex' _struct_keywords.pdbx_keywords 'cell cycle/inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 4 ? VAL A 12 ? SER A 4 VAL A 12 1 ? 9 HELX_P HELX_P2 AA2 TYR A 17 ? TYR A 32 ? TYR A 17 TYR A 32 1 ? 16 HELX_P HELX_P3 AA3 LEU A 111 ? GLU A 116 ? LEU A 111 GLU A 116 1 ? 6 HELX_P HELX_P4 AA4 SER A 122 ? PHE A 135 ? SER A 122 PHE A 135 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 73 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id 4N1 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id S20 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 73 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4N1 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 1 1.78 2 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 1 -2.12 3 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 2 1.04 4 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 2 -2.19 5 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 3 0.55 6 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 3 -2.48 7 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 4 0.57 8 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 4 -3.04 9 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 5 2.44 10 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 5 -2.69 11 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 6 0.93 12 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 6 -2.81 13 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 7 1.64 14 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 7 -2.59 15 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 8 -0.27 16 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 8 -2.76 17 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 9 1.20 18 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 9 -2.67 19 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 10 1.26 20 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 10 -2.44 21 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 11 1.13 22 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 11 -2.28 23 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 12 0.86 24 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 12 -2.53 25 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 13 1.11 26 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 13 -2.65 27 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 14 1.28 28 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 14 -2.78 29 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 15 1.33 30 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 15 -3.23 31 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 16 0.80 32 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 16 -2.35 33 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 17 1.18 34 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 17 -2.10 35 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 18 0.53 36 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 18 -3.85 37 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 19 0.99 38 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 19 -3.04 39 TYR 80 A . ? TYR 80 A PRO 81 A ? PRO 81 A 20 1.64 40 HIS 119 A . ? HIS 119 A PRO 120 A ? PRO 120 A 20 -2.23 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 35 ? VAL A 43 ? LEU A 35 VAL A 43 AA1 2 SER A 49 ? TYR A 63 ? SER A 49 TYR A 63 AA1 3 ASN A 66 ? TRP A 75 ? ASN A 66 TRP A 75 AA1 4 ILE A 86 ? VAL A 89 ? ILE A 86 VAL A 89 AA2 1 MET A 95 ? ILE A 97 ? MET A 95 ILE A 97 AA2 2 VAL A 141 ? SER A 143 ? VAL A 141 SER A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 38 ? N VAL A 38 O ASN A 54 ? O ASN A 54 AA1 2 3 N TYR A 63 ? N TYR A 63 O ASN A 66 ? O ASN A 66 AA1 3 4 N CYS A 73 ? N CYS A 73 O PHE A 88 ? O PHE A 88 AA2 1 2 N THR A 96 ? N THR A 96 O PHE A 142 ? O PHE A 142 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 4N1 _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue 4N1 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 40 ? ASP A 40 . ? 1_555 ? 2 AC1 5 SER A 41 ? SER A 41 . ? 1_555 ? 3 AC1 5 THR A 56 ? THR A 56 . ? 1_555 ? 4 AC1 5 CYS A 73 ? CYS A 73 . ? 1_555 ? 5 AC1 5 LYS A 90 ? LYS A 90 . ? 1_555 ? # _atom_sites.entry_id 5VKG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 CYS 73 73 73 CYS CYS A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 TRP 75 75 75 TRP TRP A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 CYS 87 87 87 CYS CYS A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 MET 95 95 95 MET MET A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 HIS 102 102 102 HIS HIS A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 TRP 117 117 117 TRP TRP A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 MET 131 131 131 MET MET A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 PRO 145 145 145 PRO PRO A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 4N1 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id 4N1 _pdbx_nonpoly_scheme.auth_mon_id 4N1 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-15 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_nmr_software 6 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' 8 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 9 3 'Structure model' '_pdbx_nmr_software.name' 10 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Tsg101 0.6 ? mM '[U-98% 13C; U-98% 15N]' 1 Tenatoprazole 0.6 ? mM 'natural abundance' 1 'potassium phosphate' 20 ? mM 'natural abundance' 1 'sodium chloride' 50 ? mM 'natural abundance' 2 Tsg101 0.6 ? mM '[U-13C; U-15N]' 2 Tenatoprazole 0.6 ? mM 'natural abundance' 2 'potassium phosphate' 20 ? mM 'natural abundance' 2 'sodium chloride' 50 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 32 ? ? -111.07 66.97 2 1 TYR A 63 ? ? -163.08 117.54 3 1 ASP A 123 ? ? 58.95 161.69 4 1 GLU A 138 ? ? -163.49 84.60 5 2 TYR A 17 ? ? -116.19 55.24 6 2 TYR A 32 ? ? -110.56 66.98 7 2 TYR A 63 ? ? -161.63 106.42 8 2 ASP A 123 ? ? 48.89 -175.98 9 2 GLU A 138 ? ? -166.88 84.89 10 3 TYR A 17 ? ? -111.28 64.22 11 3 TYR A 32 ? ? -114.36 68.45 12 3 TYR A 63 ? ? -163.42 109.43 13 3 ASP A 104 ? ? -90.54 -159.97 14 3 ASP A 123 ? ? 58.54 164.92 15 3 GLU A 138 ? ? -165.91 85.43 16 4 TYR A 17 ? ? -110.65 60.66 17 4 TYR A 32 ? ? -110.20 67.44 18 4 TYR A 63 ? ? -163.70 109.70 19 4 ASP A 123 ? ? 59.28 165.59 20 4 GLU A 138 ? ? -164.47 90.91 21 4 PRO A 139 ? ? -44.90 109.96 22 5 TYR A 17 ? ? -113.77 58.57 23 5 TYR A 32 ? ? -112.70 66.74 24 5 TYR A 63 ? ? -161.83 106.96 25 5 ASP A 123 ? ? 68.04 166.27 26 5 GLU A 138 ? ? -155.85 82.26 27 6 TYR A 17 ? ? -112.20 55.32 28 6 TYR A 32 ? ? -114.56 67.58 29 6 TYR A 63 ? ? -163.93 118.84 30 6 ASP A 78 ? ? -57.68 -9.87 31 6 ASP A 123 ? ? 59.47 164.65 32 7 TYR A 32 ? ? -109.78 66.19 33 7 TYR A 63 ? ? -162.93 112.61 34 7 ASP A 78 ? ? -48.27 -18.29 35 7 ASP A 123 ? ? 47.82 -177.84 36 8 TYR A 32 ? ? -114.43 66.93 37 8 TYR A 63 ? ? -162.84 106.50 38 8 ASP A 123 ? ? 65.76 167.67 39 9 TYR A 17 ? ? -114.58 70.16 40 9 TYR A 32 ? ? -118.24 68.85 41 9 TYR A 63 ? ? -163.48 116.08 42 9 ASP A 123 ? ? 66.98 165.84 43 9 GLU A 138 ? ? -157.67 81.66 44 9 PRO A 139 ? ? -49.10 109.31 45 10 TYR A 17 ? ? -108.18 61.92 46 10 TYR A 32 ? ? -111.97 68.14 47 10 TYR A 63 ? ? -163.57 114.78 48 10 ASP A 123 ? ? 69.32 164.09 49 10 GLU A 138 ? ? -161.73 83.77 50 11 TYR A 17 ? ? -117.94 61.77 51 11 TYR A 32 ? ? -115.47 68.40 52 11 TYR A 63 ? ? -162.74 107.91 53 11 ASP A 123 ? ? 51.40 175.78 54 11 GLU A 138 ? ? -154.56 83.96 55 12 TYR A 32 ? ? -117.75 69.63 56 12 TYR A 63 ? ? -162.80 111.98 57 12 HIS A 102 ? ? -138.40 -33.52 58 12 ASP A 123 ? ? 69.67 159.22 59 12 GLU A 138 ? ? -157.26 82.79 60 12 PRO A 139 ? ? -44.82 106.58 61 13 VAL A 12 ? ? -142.35 31.71 62 13 TYR A 17 ? ? -114.66 65.68 63 13 TYR A 32 ? ? -113.92 68.62 64 13 TYR A 63 ? ? -162.70 107.51 65 13 ASP A 123 ? ? 48.49 -178.16 66 13 GLU A 138 ? ? -153.45 84.62 67 14 TYR A 17 ? ? -113.94 64.61 68 14 TYR A 32 ? ? -112.08 66.67 69 14 TYR A 63 ? ? -163.57 107.40 70 14 ASP A 123 ? ? 59.07 168.15 71 14 GLU A 138 ? ? -166.58 84.43 72 15 TYR A 32 ? ? -113.85 67.77 73 15 TYR A 63 ? ? -163.97 112.04 74 15 ASP A 123 ? ? 60.62 163.50 75 15 GLU A 138 ? ? -161.55 84.25 76 15 PRO A 139 ? ? -45.38 108.16 77 16 TYR A 17 ? ? -109.14 60.84 78 16 TYR A 32 ? ? -109.55 67.30 79 16 TYR A 63 ? ? -164.02 115.05 80 16 ASP A 78 ? ? -47.71 -17.10 81 16 HIS A 102 ? ? -133.11 -30.46 82 16 ASP A 123 ? ? 49.21 178.36 83 16 GLU A 138 ? ? -156.63 84.08 84 16 PRO A 139 ? ? -43.96 107.42 85 17 TYR A 17 ? ? -116.89 58.04 86 17 TYR A 32 ? ? -115.86 68.38 87 17 TYR A 63 ? ? -162.88 108.97 88 17 ASP A 123 ? ? 48.46 179.91 89 17 GLU A 138 ? ? -158.37 83.67 90 18 TYR A 17 ? ? -113.06 65.16 91 18 TYR A 32 ? ? -112.90 65.72 92 18 TYR A 63 ? ? -163.50 115.03 93 18 ASP A 123 ? ? 66.53 165.04 94 18 GLU A 138 ? ? -168.18 89.72 95 19 TYR A 17 ? ? -110.56 64.21 96 19 TYR A 32 ? ? -108.89 64.26 97 19 ASP A 123 ? ? 47.02 -176.03 98 19 GLU A 138 ? ? -158.10 81.99 99 20 TYR A 32 ? ? -109.12 65.80 100 20 TYR A 63 ? ? -163.74 108.79 101 20 ASP A 123 ? ? 64.37 166.21 102 20 GLU A 138 ? ? -162.38 83.13 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 2 Y 1 A GLY 1 ? A GLY 1 3 3 Y 1 A GLY 1 ? A GLY 1 4 4 Y 1 A GLY 1 ? A GLY 1 5 5 Y 1 A GLY 1 ? A GLY 1 6 6 Y 1 A GLY 1 ? A GLY 1 7 7 Y 1 A GLY 1 ? A GLY 1 8 8 Y 1 A GLY 1 ? A GLY 1 9 9 Y 1 A GLY 1 ? A GLY 1 10 10 Y 1 A GLY 1 ? A GLY 1 11 11 Y 1 A GLY 1 ? A GLY 1 12 12 Y 1 A GLY 1 ? A GLY 1 13 13 Y 1 A GLY 1 ? A GLY 1 14 14 Y 1 A GLY 1 ? A GLY 1 15 15 Y 1 A GLY 1 ? A GLY 1 16 16 Y 1 A GLY 1 ? A GLY 1 17 17 Y 1 A GLY 1 ? A GLY 1 18 18 Y 1 A GLY 1 ? A GLY 1 19 19 Y 1 A GLY 1 ? A GLY 1 20 20 Y 1 A GLY 1 ? A GLY 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '4-methoxy-1-(5-methoxy-3H-imidazo[4,5-b]pyridin-2-yl)-3,5-dimethyl-2-(sulfanylmethyl)pyridin-1-ium' _pdbx_entity_nonpoly.comp_id 4N1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ;Liquid-chromatography mass spectrometry was used to confirm that 4N1 is attached to Tsg101 via a disulfide bond. NMR spectroscopy also confirmed this. ; #