HEADER TRANSFERASE 18-MAY-17 5VU5 TITLE TNA POLYMERASE, APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KOD-RI; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 311400; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-NUCLEIC ACID COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CHIM,J.C.CHAPUT REVDAT 3 04-OCT-23 5VU5 1 REMARK REVDAT 2 13-DEC-17 5VU5 1 JRNL REVDAT 1 06-DEC-17 5VU5 0 JRNL AUTH N.CHIM,C.SHI,S.P.SAU,A.NIKOOMANZAR,J.C.CHAPUT JRNL TITL STRUCTURAL BASIS FOR TNA SYNTHESIS BY AN ENGINEERED TNA JRNL TITL 2 POLYMERASE. JRNL REF NAT COMMUN V. 8 1810 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29180809 JRNL DOI 10.1038/S41467-017-02014-0 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 19774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.3208 - 6.0302 0.89 2016 162 0.2207 0.3156 REMARK 3 2 6.0302 - 4.7872 0.90 1948 151 0.2475 0.2898 REMARK 3 3 4.7872 - 4.1823 0.88 1885 150 0.2325 0.2551 REMARK 3 4 4.1823 - 3.8000 0.88 1861 145 0.2609 0.2873 REMARK 3 5 3.8000 - 3.5277 0.87 1830 141 0.2849 0.3309 REMARK 3 6 3.5277 - 3.3197 0.86 1795 133 0.3105 0.3640 REMARK 3 7 3.3197 - 3.1535 0.85 1760 142 0.3650 0.3747 REMARK 3 8 3.1535 - 3.0162 0.84 1760 139 0.3673 0.3833 REMARK 3 9 3.0162 - 2.9001 0.84 1749 136 0.4001 0.4350 REMARK 3 10 2.9001 - 2.8000 0.83 1737 134 0.4259 0.4457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5867 REMARK 3 ANGLE : 0.559 7918 REMARK 3 CHIRALITY : 0.042 852 REMARK 3 PLANARITY : 0.004 1014 REMARK 3 DIHEDRAL : 14.547 3561 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9613 1.8695 -10.2571 REMARK 3 T TENSOR REMARK 3 T11: 0.4787 T22: 0.4645 REMARK 3 T33: 0.4093 T12: 0.0131 REMARK 3 T13: 0.0968 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.1742 L22: 3.4677 REMARK 3 L33: 4.6453 L12: 2.5714 REMARK 3 L13: 1.2382 L23: -0.2133 REMARK 3 S TENSOR REMARK 3 S11: -0.5125 S12: 0.4360 S13: 0.2225 REMARK 3 S21: -0.1568 S22: 0.4268 S23: -0.1003 REMARK 3 S31: -0.7226 S32: 0.2078 S33: -0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1341 -24.3184 -25.8043 REMARK 3 T TENSOR REMARK 3 T11: 0.8839 T22: 0.7665 REMARK 3 T33: 0.5229 T12: -0.1782 REMARK 3 T13: 0.0489 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 2.2529 L22: 4.2841 REMARK 3 L33: 4.5863 L12: 0.4826 REMARK 3 L13: -1.7339 L23: 0.2263 REMARK 3 S TENSOR REMARK 3 S11: -0.4407 S12: 0.6363 S13: -0.2298 REMARK 3 S21: -1.4389 S22: 0.4816 S23: -0.5729 REMARK 3 S31: 0.6735 S32: -0.1685 S33: -0.0742 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 532 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1330 -17.6946 8.1239 REMARK 3 T TENSOR REMARK 3 T11: 0.5915 T22: 0.6276 REMARK 3 T33: 0.4381 T12: 0.0126 REMARK 3 T13: 0.0029 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 1.4311 L22: 2.0414 REMARK 3 L33: 2.9611 L12: 0.6973 REMARK 3 L13: 0.6650 L23: 0.2198 REMARK 3 S TENSOR REMARK 3 S11: 0.1509 S12: -0.3287 S13: -0.3432 REMARK 3 S21: 0.4354 S22: -0.0519 S23: -0.0690 REMARK 3 S31: 0.3392 S32: -0.2245 S33: -0.0944 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 533 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4754 -49.5554 7.4049 REMARK 3 T TENSOR REMARK 3 T11: 0.6379 T22: 0.8203 REMARK 3 T33: 1.3726 T12: -0.1428 REMARK 3 T13: -0.2518 T23: -0.1191 REMARK 3 L TENSOR REMARK 3 L11: 1.4790 L22: 2.9307 REMARK 3 L33: 5.9088 L12: 0.2909 REMARK 3 L13: 0.1034 L23: 1.0796 REMARK 3 S TENSOR REMARK 3 S11: 0.3792 S12: 0.0935 S13: -0.9778 REMARK 3 S21: 0.0639 S22: -0.1520 S23: -0.3122 REMARK 3 S31: 0.4427 S32: 0.2165 S33: -0.2313 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 55.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.31900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.15700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1WNS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.0, 20% PEG3000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.40950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.40950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 610 REMARK 465 VAL A 611 REMARK 465 ARG A 612 REMARK 465 ARG A 613 REMARK 465 ASP A 614 REMARK 465 TRP A 615 REMARK 465 SER A 616 REMARK 465 GLU A 617 REMARK 465 THR A 667 REMARK 465 ARG A 668 REMARK 465 ASP A 669 REMARK 465 LEU A 670 REMARK 465 LYS A 671 REMARK 465 ASP A 672 REMARK 465 TYR A 673 REMARK 465 LYS A 674 REMARK 465 ALA A 675 REMARK 465 THR A 676 REMARK 465 GLY A 677 REMARK 465 ALA A 688 REMARK 465 ARG A 689 REMARK 465 GLY A 690 REMARK 465 VAL A 691 REMARK 465 LYS A 692 REMARK 465 ILE A 693 REMARK 465 ARG A 694 REMARK 465 PRO A 695 REMARK 465 GLY A 696 REMARK 465 THR A 697 REMARK 465 VAL A 698 REMARK 465 LEU A 704 REMARK 465 LYS A 705 REMARK 465 GLY A 706 REMARK 465 SER A 707 REMARK 465 GLY A 708 REMARK 465 ARG A 709 REMARK 465 ILE A 710 REMARK 465 GLY A 711 REMARK 465 ASP A 712 REMARK 465 PRO A 716 REMARK 465 PHE A 717 REMARK 465 ASP A 718 REMARK 465 PRO A 722 REMARK 465 THR A 723 REMARK 465 LYS A 724 REMARK 465 HIS A 725 REMARK 465 ALA A 747 REMARK 465 PHE A 748 REMARK 465 GLY A 749 REMARK 465 TYR A 757 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 THR A 760 REMARK 465 ARG A 761 REMARK 465 GLN A 762 REMARK 465 VAL A 763 REMARK 465 GLY A 764 REMARK 465 LEU A 765 REMARK 465 SER A 766 REMARK 465 ALA A 767 REMARK 465 TRP A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 GLY A 773 REMARK 465 THR A 774 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 LYS A 559 CG CD CE NZ REMARK 470 LYS A 591 CG CD CE NZ REMARK 470 ILE A 603 CG1 CG2 CD1 REMARK 470 THR A 604 OG1 CG2 REMARK 470 THR A 605 OG1 CG2 REMARK 470 ARG A 606 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 631 CG CD1 CD2 REMARK 470 LYS A 644 CG CD CE NZ REMARK 470 VAL A 646 CG1 CG2 REMARK 470 LYS A 649 CG CD CE NZ REMARK 470 LEU A 650 CG CD1 CD2 REMARK 470 LYS A 652 CG CD CE NZ REMARK 470 LEU A 686 CG CD1 CD2 REMARK 470 ILE A 699 CG1 CG2 CD1 REMARK 470 SER A 700 OG REMARK 470 ILE A 702 CG1 CG2 CD1 REMARK 470 VAL A 703 CG1 CG2 REMARK 470 GLU A 730 CG CD OE1 OE2 REMARK 470 TYR A 732 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 ASN A 735 CG OD1 ND2 REMARK 470 GLU A 742 CG CD OE1 OE2 REMARK 470 LYS A 752 CG CD CE NZ REMARK 470 GLU A 753 CG CD OE1 OE2 REMARK 470 ASP A 754 CG OD1 OD2 REMARK 470 LEU A 755 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 384 OH TYR A 388 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -127.69 62.77 REMARK 500 ASP A 45 13.44 -68.67 REMARK 500 ALA A 56 -168.66 -124.07 REMARK 500 THR A 144 -169.68 -118.31 REMARK 500 TRP A 173 -48.64 -133.57 REMARK 500 SER A 185 -100.00 27.61 REMARK 500 THR A 186 -168.01 -127.17 REMARK 500 ASP A 202 73.09 52.13 REMARK 500 PHE A 214 -62.54 -134.36 REMARK 500 ALA A 231 95.76 -59.39 REMARK 500 ASP A 246 -72.19 -71.14 REMARK 500 TYR A 273 65.76 -111.59 REMARK 500 ARG A 310 -32.22 138.17 REMARK 500 GLN A 436 -47.51 62.19 REMARK 500 GLU A 459 -19.66 -173.51 REMARK 500 LYS A 526 -156.83 -83.32 REMARK 500 GLU A 527 -19.78 62.73 REMARK 500 TYR A 532 33.60 -144.78 REMARK 500 PHE A 534 84.14 58.46 REMARK 500 PRO A 572 -172.47 -64.65 REMARK 500 LYS A 584 -123.92 -100.90 REMARK 500 THR A 590 164.82 61.76 REMARK 500 ASP A 598 -89.32 -112.16 REMARK 500 GLU A 599 -4.91 -153.47 REMARK 500 GLU A 600 57.64 -140.30 REMARK 500 LYS A 602 98.01 63.99 REMARK 500 LEU A 608 -51.09 -162.51 REMARK 500 LEU A 631 -66.45 -106.97 REMARK 500 VAL A 636 -85.27 -69.44 REMARK 500 LYS A 638 -63.55 4.24 REMARK 500 GLU A 658 7.58 -64.00 REMARK 500 VAL A 661 128.10 -38.21 REMARK 500 GLN A 665 -150.98 -125.71 REMARK 500 VAL A 680 5.33 51.03 REMARK 500 LEU A 686 48.86 -87.07 REMARK 500 PHE A 720 -50.73 69.51 REMARK 500 ASP A 728 -155.69 -88.19 REMARK 500 VAL A 741 -65.15 -123.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VU6 RELATED DB: PDB REMARK 900 RELATED ID: 5VU7 RELATED DB: PDB REMARK 900 RELATED ID: 5VU8 RELATED DB: PDB REMARK 900 RELATED ID: 5VU9 RELATED DB: PDB DBREF 5VU5 A 1 774 UNP D0VWU9 D0VWU9_THEKO 1 774 SEQADV 5VU5 ALA A 141 UNP D0VWU9 ASP 141 ENGINEERED MUTATION SEQADV 5VU5 ALA A 143 UNP D0VWU9 GLU 143 ENGINEERED MUTATION SEQADV 5VU5 HIS A 147 UNP D0VWU9 GLU 147 ENGINEERED MUTATION SEQADV 5VU5 ARG A 485 UNP D0VWU9 ALA 485 ENGINEERED MUTATION SEQADV 5VU5 LYS A 584 UNP D0VWU9 GLU 584 ENGINEERED MUTATION SEQADV 5VU5 ILE A 664 UNP D0VWU9 GLU 664 ENGINEERED MUTATION SEQRES 1 A 774 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 774 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 774 LYS ILE GLU TYR ASP ARG THR PHE GLU PRO TYR PHE TYR SEQRES 4 A 774 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU GLU VAL LYS SEQRES 5 A 774 LYS ILE THR ALA GLU ARG HIS GLY THR VAL VAL THR VAL SEQRES 6 A 774 LYS ARG VAL GLU LYS VAL GLN LYS LYS PHE LEU GLY ARG SEQRES 7 A 774 PRO VAL GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 774 ASP VAL PRO ALA ILE ARG ASP LYS ILE ARG GLU HIS PRO SEQRES 9 A 774 ALA VAL ILE ASP ILE TYR GLU TYR ASP ILE PRO PHE ALA SEQRES 10 A 774 LYS ARG TYR LEU ILE ASP LYS GLY LEU VAL PRO MET GLU SEQRES 11 A 774 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ALA ILE ALA SEQRES 12 A 774 THR LEU TYR HIS GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 774 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 774 VAL ILE THR TRP LYS ASN VAL ASP LEU PRO TYR VAL ASP SEQRES 15 A 774 VAL VAL SER THR GLU ARG GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 774 ARG VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 774 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 774 ARG CYS GLU LYS LEU GLY ILE ASN PHE ALA LEU GLY ARG SEQRES 19 A 774 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 774 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 774 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 774 THR LEU GLU ALA VAL TYR GLU ALA VAL PHE GLY GLN PRO SEQRES 23 A 774 LYS GLU LYS VAL TYR ALA GLU GLU ILE THR THR ALA TRP SEQRES 24 A 774 GLU THR GLY GLU ASN LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 774 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 774 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU ILE GLY SEQRES 27 A 774 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 774 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 774 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU LYS GLU LEU SEQRES 30 A 774 ALA ARG ARG ARG GLN SER TYR GLU GLY GLY TYR VAL LYS SEQRES 31 A 774 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 774 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 774 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS LYS SEQRES 34 A 774 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS ARG PHE CYS SEQRES 35 A 774 LYS ASP PHE PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 774 LEU LEU GLU GLU ARG GLN LYS ILE LYS LYS LYS MET LYS SEQRES 37 A 774 ALA THR ILE ASP PRO ILE GLU ARG LYS LEU LEU ASP TYR SEQRES 38 A 774 ARG GLN ARG ARG ILE LYS ILE LEU ALA ASN SER TYR TYR SEQRES 39 A 774 GLY TYR TYR GLY TYR ALA ARG ALA ARG TRP TYR CYS LYS SEQRES 40 A 774 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLU TYR SEQRES 41 A 774 ILE THR MET THR ILE LYS GLU ILE GLU GLU LYS TYR GLY SEQRES 42 A 774 PHE LYS VAL ILE TYR SER ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 774 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 774 ALA MET GLU PHE LEU LYS TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 774 GLY ALA LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG SEQRES 46 A 774 GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 774 GLU GLU GLY LYS ILE THR THR ARG GLY LEU GLU ILE VAL SEQRES 48 A 774 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 774 ARG VAL LEU GLU ALA LEU LEU LYS ASP GLY ASP VAL GLU SEQRES 50 A 774 LYS ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 774 SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE HIS SEQRES 52 A 774 ILE GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR SEQRES 53 A 774 GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 774 GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 774 VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 774 PRO PHE ASP GLU PHE ASP PRO THR LYS HIS LYS TYR ASP SEQRES 57 A 774 ALA GLU TYR TYR ILE GLU ASN GLN VAL LEU PRO ALA VAL SEQRES 58 A 774 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 774 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU SER ALA SEQRES 60 A 774 TRP LEU LYS PRO LYS GLY THR HELIX 1 AA1 ALA A 47 LYS A 52 1 6 HELIX 2 AA2 HIS A 89 GLN A 91 5 3 HELIX 3 AA3 ASP A 92 GLU A 102 1 11 HELIX 4 AA4 PRO A 115 LYS A 124 1 10 HELIX 5 AA5 THR A 186 ASP A 202 1 17 HELIX 6 AA6 PHE A 214 LEU A 226 1 13 HELIX 7 AA7 LEU A 260 ILE A 268 1 9 HELIX 8 AA8 THR A 274 GLY A 284 1 11 HELIX 9 AA9 TYR A 291 TRP A 299 1 9 HELIX 10 AB1 ARG A 307 GLY A 338 1 32 HELIX 11 AB2 SER A 340 ARG A 346 1 7 HELIX 12 AB3 SER A 348 ARG A 364 1 17 HELIX 13 AB4 ASP A 373 GLN A 382 1 10 HELIX 14 AB5 SER A 407 ASN A 417 1 11 HELIX 15 AB6 GLY A 447 LYS A 468 1 22 HELIX 16 AB7 ASP A 472 GLY A 498 1 27 HELIX 17 AB8 CYS A 506 LYS A 526 1 21 HELIX 18 AB9 GLU A 554 LEU A 571 1 18 HELIX 19 AC1 ALA A 619 LYS A 632 1 14 HELIX 20 AC2 LYS A 638 GLU A 648 1 11 HELIX 21 AC3 PRO A 656 LEU A 660 5 5 HELIX 22 AC4 VAL A 680 LEU A 686 1 7 HELIX 23 AC5 TYR A 731 GLN A 736 1 6 HELIX 24 AC6 VAL A 737 ARG A 743 1 7 HELIX 25 AC7 ARG A 751 ARG A 756 5 6 SHEET 1 AA1 3 ILE A 2 GLU A 10 0 SHEET 2 AA1 3 LYS A 13 GLU A 22 -1 O LYS A 13 N GLU A 10 SHEET 3 AA1 3 GLU A 25 ASP A 31 -1 O LYS A 27 N LYS A 20 SHEET 1 AA2 4 VAL A 68 PHE A 75 0 SHEET 2 AA2 4 ARG A 78 TYR A 86 -1 O VAL A 80 N LYS A 73 SHEET 3 AA2 4 TYR A 37 LEU A 42 -1 N PHE A 38 O LEU A 85 SHEET 4 AA2 4 VAL A 106 TYR A 110 -1 O ILE A 107 N LEU A 41 SHEET 1 AA3 2 ALA A 56 ARG A 58 0 SHEET 2 AA3 2 THR A 61 VAL A 63 -1 O VAL A 63 N ALA A 56 SHEET 1 AA4 6 VAL A 181 VAL A 183 0 SHEET 2 AA4 6 GLY A 167 THR A 172 1 N THR A 172 O ASP A 182 SHEET 3 AA4 6 ILE A 157 ASP A 164 -1 N ILE A 160 O ILE A 171 SHEET 4 AA4 6 MET A 137 THR A 144 -1 N ALA A 139 O ALA A 163 SHEET 5 AA4 6 VAL A 205 THR A 208 1 O VAL A 205 N LEU A 138 SHEET 6 AA4 6 ILE A 256 ASP A 259 1 O ILE A 256 N LEU A 206 SHEET 1 AA5 2 LYS A 240 GLN A 242 0 SHEET 2 AA5 2 ALA A 249 GLU A 251 -1 O ALA A 249 N GLN A 242 SHEET 1 AA6 3 LEU A 396 TRP A 397 0 SHEET 2 AA6 3 GLY A 586 PHE A 588 -1 O GLY A 586 N TRP A 397 SHEET 3 AA6 3 TYR A 594 ALA A 595 -1 O ALA A 595 N PHE A 587 SHEET 1 AA7 4 LYS A 535 ASP A 540 0 SHEET 2 AA7 4 GLY A 543 THR A 547 -1 O PHE A 545 N TYR A 538 SHEET 3 AA7 4 ILE A 400 PHE A 405 -1 N VAL A 401 O ALA A 546 SHEET 4 AA7 4 LEU A 577 TYR A 583 -1 O TYR A 583 N ILE A 400 SHEET 1 AA8 2 TYR A 431 VAL A 433 0 SHEET 2 AA8 2 ARG A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SSBOND 1 CYS A 428 CYS A 442 1555 1555 2.03 SSBOND 2 CYS A 506 CYS A 509 1555 1555 2.03 CRYST1 72.819 110.620 111.800 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013733 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008945 0.00000